17-03-17 21:20:35.658 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:20:35.658 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:20:35.658 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:20:35.658 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:35.658 -07 000000627 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:20:35.668 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:35.668 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:35.668 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:20:35.668 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:20:35.668 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:20:35.778 -07 000000429 INF: FPGA: Recv YMVTO 154377 871
17-03-17 21:20:35.788 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 119 ms overall
17-03-17 21:20:35.788 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 21:20:35.788 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 21:20:35.788 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.548 mm, average velocity = 4.606 mm/sec
17-03-17 21:20:36.868 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:38.788 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:38.788 -07 000000547 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:20:38.798 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:38.798 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:38.808 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:38.808 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:20:38.808 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3155 ms
17-03-17 21:20:38.818 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 60° ===================
17-03-17 21:20:38.818 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:20:38.818 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:20:38.818 -07 000000547 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:20:38.828 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:20:38.828 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:20:38.828 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 21:20:38.838 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:38.838 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 60° ===================
17-03-17 21:20:38.838 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:20:38.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:20:38.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:20:38.868 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:20:38.868 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:20:38.868 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:20:39.168 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:20:39.188 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:20:39.188 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:20:39.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:20:39.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:20:39.258 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:20:39.358 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:20:39.358 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:20:39.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:39.438 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:20:39.438 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:20:39.438 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:20:39.568 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:20:39.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:39.608 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.985358,
17-03-17 21:20:41.868 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 21:20:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=741, R2=758, Total=1499. Warn if over 250 bubbles per interval.
17-03-17 21:20:42.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:42.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:43.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:43.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:43.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:43.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:43.668 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-17 21:20:43.668 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:20:43.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:43.828 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:20:43.828 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:20:43.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:43.988 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:20:43.988 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:20:43.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:20:44.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:20:44.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:44.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:44.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:44.608 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:20:44.608 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:20:44.968 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.971733,
17-03-17 21:20:45.828 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:20:45.828 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:20:45.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:20:45.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:20:45.848 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:20:45.848 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:20:45.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:20:46.008 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:20:46.008 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:20:46.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:20:46.078 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:20:46.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:20:46.178 -07 000000610 INF: =================== Cycle #50, Pumping Reagent CMS (4) ===================
17-03-17 21:20:46.178 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:20:46.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:46.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:20:46.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:20:46.208 -07 000000610 INF: =================== Cycle #50, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:20:46.338 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:20:46.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:46.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 2
17-03-17 21:20:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=2, R2=5, Total=7. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=743, R2=763, Total=1506. Warn if over 250 bubbles per interval.
17-03-17 21:20:47.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:47.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:48.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:48.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:48.298 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:20:48.298 -07 000000610 INF: =================== Cycle #50, Pumping Reagent CMS (4) ===================
17-03-17 21:20:48.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:48.458 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:20:48.458 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:20:48.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:48.618 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:20:48.618 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:20:48.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:20:48.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:20:48.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:49.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:49.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:49.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:20:49.238 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:20:50.338 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.979922,
17-03-17 21:20:50.458 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:20:50.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:20:50.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:20:50.478 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:20:50.478 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:20:50.478 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:20:50.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:20:50.648 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:20:50.648 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:20:50.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:20:50.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:20:50.718 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:20:50.818 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:20:50.818 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:20:50.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:50.848 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:20:50.848 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:20:50.848 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:20:50.978 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:20:51.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:51.868 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 5
17-03-17 21:20:51.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=5, R2=6, Total=11. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=748, R2=769, Total=1517. Warn if over 250 bubbles per interval.
17-03-17 21:20:51.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:51.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:51.918 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 21:20:51.918 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:20:52.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:52.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:20:52.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:20:52.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:20:52.238 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:20:52.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:20:52.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:20:52.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:20:52.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:52.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:52.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:52.858 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:20:52.858 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:20:52.858 -07 000000415 INF: WaitCommand(10000) start
17-03-17 21:20:52.858 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:20:52.858 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:20:54.078 -07 000000475 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:20:54.078 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 21:20:54.108 -07 000000475 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:20:54.108 -07 000000475 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:20:54.238 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:20:54.278 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:55.708 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.98264,
17-03-17 21:20:55.808 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:55.838 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:20:56.258 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 21:20:56.288 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:20:56.288 -07 000000475 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:20:56.288 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:20:56.288 -07 000000475 INF: ===================  ===================
17-03-17 21:20:56.868 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 21:20:56.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=750, R2=769, Total=1519. Warn if over 250 bubbles per interval.
17-03-17 21:21:01.078 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.975845,
17-03-17 21:21:01.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:01.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=750, R2=769, Total=1519. Warn if over 250 bubbles per interval.
17-03-17 21:21:02.868 -07 000000415 INF: WaitCommand(10000) end
17-03-17 21:21:02.868 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:21:02.868 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:21:02.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:02.908 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:21:02.908 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:21:02.908 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:21:03.038 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:21:03.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:06.448 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.966297,
17-03-17 21:21:06.868 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 21:21:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=751, R2=771, Total=1522. Warn if over 250 bubbles per interval.
17-03-17 21:21:09.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:09.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:09.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:09.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:10.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:10.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:10.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:10.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:11.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:11.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:11.038 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:21:11.038 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:21:11.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:11.198 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:21:11.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:21:11.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:11.358 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:21:11.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:21:11.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:21:11.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:21:11.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:11.818 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.005817,
17-03-17 21:21:11.868 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 21:21:11.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=753, R2=772, Total=1525. Warn if over 250 bubbles per interval.
17-03-17 21:21:11.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:11.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:11.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:21:11.978 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:21:13.198 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:21:13.198 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:21:13.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:21:13.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:21:13.218 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:21:13.218 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:21:13.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:21:13.448 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:21:13.448 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:21:13.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:21:13.518 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:21:13.518 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:21:13.618 -07 000000610 INF: =================== Cycle #50, Pumping Reagent IMT (1) ===================
17-03-17 21:21:13.618 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:21:13.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:13.658 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:21:13.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:21:13.658 -07 000000610 INF: =================== Cycle #50, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:21:13.788 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:21:13.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:15.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:15.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:15.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:15.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:15.748 -07 000000610 INF: LanePump: Waited 1918 ms for pump motion to complete
17-03-17 21:21:15.748 -07 000000610 INF: =================== Cycle #50, Pumping Reagent IMT (1) ===================
17-03-17 21:21:15.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:15.908 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:21:15.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:21:16.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:16.068 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:21:16.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:21:16.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:21:16.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:21:16.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:16.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:16.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:16.688 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:21:16.688 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:21:16.878 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:21:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=753, R2=773, Total=1526. Warn if over 250 bubbles per interval.
17-03-17 21:21:17.188 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.986717,
17-03-17 21:21:17.908 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:21:17.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:21:17.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:21:17.928 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:21:17.928 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:21:17.928 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:21:18.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:21:18.178 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:21:18.178 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:21:18.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:21:18.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:21:18.248 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:21:18.348 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:21:18.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:21:18.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:18.388 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:21:18.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:21:18.388 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:21:18.518 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:21:18.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:19.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:19.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:19.458 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:21:19.458 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:21:19.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:19.618 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:21:19.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:21:19.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:19.778 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:21:19.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:21:19.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:21:19.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:21:19.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:20.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:20.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:20.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:21:20.398 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:21:20.398 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 65° ===================
17-03-17 21:21:20.398 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:21:20.398 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:21:20.398 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:21:20.408 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:21:20.408 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:21:20.408 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 21:21:20.418 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:21:20.418 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 65° ===================
17-03-17 21:21:20.418 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:21:20.418 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:21:21.868 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 21:21:21.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:22.558 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.985358,
17-03-17 21:21:26.868 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:27.928 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.015368,
17-03-17 21:21:31.868 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:31.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:33.298 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.004458,
17-03-17 21:21:36.868 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:38.668 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.970374,
17-03-17 21:21:41.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:44.038 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.96762,
17-03-17 21:21:46.868 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:49.408 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.99219,
17-03-17 21:21:50.428 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:21:50.428 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:21:50.428 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:21:50.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:50.558 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:21:50.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:21:50.558 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:21:50.688 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:21:50.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:51.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:51.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:51.298 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 21:21:51.298 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:21:51.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:51.458 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:21:51.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:21:51.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:21:51.618 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:21:51.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:21:51.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:21:51.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:21:51.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:51.868 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:51.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:21:52.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:52.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:52.238 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:21:52.238 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:21:52.238 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:21:52.238 -07 000000429 INF: WaitCommand(30000) start
17-03-17 21:21:52.238 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:21:53.458 -07 000000512 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:21:53.458 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-17 21:21:53.488 -07 000000512 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:21:53.488 -07 000000512 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:21:53.618 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:21:53.658 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:54.778 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.001704,
17-03-17 21:21:55.998 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:56.028 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:21:56.448 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 21:21:56.478 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:21:56.478 -07 000000512 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:21:56.478 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:21:56.478 -07 000000512 INF: ===================  ===================
17-03-17 21:21:56.868 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:21:56.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:22:00.148 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.988112,
17-03-17 21:22:01.868 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:01.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:22:05.528 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.985358,
17-03-17 21:22:06.868 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:22:10.898 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.008536,
17-03-17 21:22:11.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:11.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:22:16.258 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.003063,
17-03-17 21:22:16.868 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:16.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:22:21.638 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.018051,
17-03-17 21:22:21.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:21.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=754, R2=774, Total=1528. Warn if over 250 bubbles per interval.
17-03-17 21:22:22.248 -07 000000429 INF: WaitCommand(30000) end
17-03-17 21:22:22.248 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 22° ===================
17-03-17 21:22:22.248 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:22:22.248 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:22:22.258 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:22:22.258 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:22:22.258 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:22:22.258 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-17 21:22:22.268 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:22.268 -07 000000610 INF: =================== Cycle #50, Flow Cell Temp 22° ===================
17-03-17 21:22:22.268 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:22:22.268 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:22:22.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:22:22.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:22.298 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:22:22.298 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:22:22.298 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:22:22.428 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:22:22.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:25.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:25.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:26.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:26.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:26.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:26.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:26.528 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:22:26.528 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:22:26.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:26.688 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:22:26.688 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:22:26.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:26.848 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:22:26.848 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:22:26.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:22:26.868 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-17 21:22:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:26.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:22:26.998 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.02213,
17-03-17 21:22:27.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:27.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:27.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:27.468 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:22:27.468 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:22:28.688 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:22:28.688 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:22:28.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:22:28.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:22:28.708 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:22:28.708 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:22:28.858 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:22:28.878 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:22:28.878 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:22:28.928 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:22:28.948 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:22:28.948 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:22:29.048 -07 000000610 INF: =================== Cycle #50, Pumping Reagent USM (2) ===================
17-03-17 21:22:29.048 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:22:29.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:29.078 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:22:29.078 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:22:29.078 -07 000000610 INF: =================== Cycle #50, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:22:29.208 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:22:29.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:30.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:30.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:31.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:31.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:31.168 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:22:31.168 -07 000000610 INF: =================== Cycle #50, Pumping Reagent USM (2) ===================
17-03-17 21:22:31.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:31.328 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:22:31.328 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:22:31.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:31.488 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:22:31.488 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:22:31.488 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:22:31.618 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:22:31.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:31.868 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:31.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:32.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:32.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:32.108 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:22:32.108 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:22:32.368 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.990831,
17-03-17 21:22:33.328 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:22:33.328 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:22:33.328 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:22:33.348 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:22:33.348 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:22:33.348 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:22:33.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:22:33.518 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:22:33.518 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:22:33.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:22:33.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:22:33.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:22:33.688 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:22:33.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:22:33.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:33.718 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:22:33.718 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:22:33.718 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:22:33.848 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:22:33.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:34.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:34.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:34.788 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:22:34.788 -07 000000610 INF: =================== Cycle #50, Pumping Reagent PR2 (3) ===================
17-03-17 21:22:34.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:34.948 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:22:34.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:22:35.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:22:35.108 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:22:35.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:22:35.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:22:35.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:22:35.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:35.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:35.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:35.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:22:35.728 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:22:35.728 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:22:35.728 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:22:35.728 -07 000000424 INF: WaitCommand(10000) start
17-03-17 21:22:36.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:36.948 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:22:36.948 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 21:22:36.978 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:22:36.978 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:22:37.108 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:22:37.148 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:37.748 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.005817,
17-03-17 21:22:38.678 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:38.708 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:22:39.128 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:22:39.158 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:22:39.158 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:22:39.158 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:22:39.158 -07 000000480 INF: ===================  ===================
17-03-17 21:22:41.868 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:43.108 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.996267,
17-03-17 21:22:45.738 -07 000000424 INF: WaitCommand(10000) end
17-03-17 21:22:45.738 -07 000000610 INF: =================== Cycle #50, Imaging ===================
17-03-17 21:22:45.738 -07 000000610 INF: Imaging Cycle 50: ScanTilesCommand Cycle 50 time start.
17-03-17 21:22:45.738 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:22:45.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:22:45.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:22:45.768 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:22:45.768 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:22:46.068 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:22:46.088 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:22:46.088 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:22:46.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:22:46.158 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:22:46.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:22:46.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:22:46.158 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:22:46.158 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:22:46.158 -07 000000512 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:22:46.158 -07 000000627 INF: FPGA: Recv EXLED1ON 
17-03-17 21:22:46.168 -07 000000512 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:22:46.168 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:22:46.168 -07 000000382 INF: FPGA: Recv EXLED1ADCR 23153
17-03-17 21:22:46.178 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:46.178 -07 000000512 INF: RedLED: Using Red data: Photodiode ADC 23153 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-17 21:22:46.178 -07 000000512 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:22:46.178 -07 000000475 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:22:46.188 -07 000000512 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:46.188 -07 000000512 INF: RedLED: LED was on for 19 ms
17-03-17 21:22:46.188 -07 000000512 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 21:22:46.188 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:22:46.188 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:22:46.188 -07 000000512 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:22:46.188 -07 000000012 INF: FPGA: Recv EXLED2ON 
17-03-17 21:22:46.198 -07 000000512 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:22:46.198 -07 000000512 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:22:46.198 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2105
17-03-17 21:22:46.208 -07 000000512 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:46.208 -07 000000512 INF: GreenLED: Using Green data: Photodiode ADC 2105 --> 0.9 mW (old method), or 182.9 mW (new method). Difference = 181.9 mW
17-03-17 21:22:46.208 -07 000000512 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:22:46.208 -07 000000429 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:22:46.218 -07 000000512 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:46.218 -07 000000512 INF: GreenLED: LED was on for 20 ms
17-03-17 21:22:46.218 -07 000000512 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 21:22:46.218 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:22:46.218 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-17 21:22:46.228 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:22:46.228 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:22:46.728 -07 000000431 INF: FPGA: Recv EMOUT
17-03-17 21:22:46.728 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:22:46.728 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:22:46.728 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 21:22:46.738 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:22:46.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:22:46.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127749741247011. ------
17-03-17 21:22:46.738 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:22:46.738 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17959 mm
17-03-17 21:22:46.738 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:22:46.738 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:22:46.748 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:22:46.748 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:22:46.748 -07 000000501 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 21:22:46.748 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:22:46.748 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39231, sync = True, waitForSettling = False)
17-03-17 21:22:46.748 -07 000000608 INF: Z Motor: Moving to -0.179588 mm, started at -0.127750 mm, distance = -51.84 um
17-03-17 21:22:46.758 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:46.758 -07 000000547 INF: FPGA: Recv YRDPOS 154379
17-03-17 21:22:46.768 -07 000000608 INF: FPGA: Xmit ZDACW 39231\n [Z Motor]
17-03-17 21:22:46.768 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:22:46.768 -07 000000501 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:46.768 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:22:46.768 -07 000000501 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:22:46.768 -07 000000501 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:22:46.778 -07 000000608 INF: FPGA: 'ZDACW 39231' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:22:46.778 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:22:46.778 -07 000000458 INF: FPGA: Recv ZDACR 39231
17-03-17 21:22:46.788 -07 000000501 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:22:46.788 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:22:46.788 -07 000000608 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:22:46.868 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:46.948 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:22:46.948 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:22:48.468 -07 000000476 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 21:22:48.468 -07 000000501 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 21:22:48.468 -07 000000501 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:22:48.468 -07 000000501 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-17 21:22:48.468 -07 000000501 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 21:22:48.478 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.990831,
17-03-17 21:22:51.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:51.318 -07 000000382 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:22:51.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.328 -07 000000501 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:51.348 -07 000000501 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:22:51.348 -07 000000501 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:22:51.348 -07 000000501 INF: Y Motor: Moved to 59.9102 after 4604 ms
17-03-17 21:22:51.348 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179588 mm (DAC = 39231)
17-03-17 21:22:51.348 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.358 -07 000000012 INF: FPGA: Recv ZSGSRD 37248
17-03-17 21:22:51.358 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:22:51.358 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.358 -07 000000459 INF: FPGA: Recv ZSGSRD 37246
17-03-17 21:22:51.368 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:22:51.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.368 -07 000000458 INF: FPGA: Recv ZSGSRD 37242
17-03-17 21:22:51.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.378 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.378 -07 000000576 INF: FPGA: Recv ZSGSRD 37243
17-03-17 21:22:51.388 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.388 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.388 -07 000000627 INF: FPGA: Recv ZSGSRD 37242
17-03-17 21:22:51.398 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.398 -07 000000476 INF: FPGA: Recv ZSGSRD 37244
17-03-17 21:22:51.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.408 -07 000000438 INF: FPGA: Recv ZSGSRD 37245
17-03-17 21:22:51.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.418 -07 000000429 INF: FPGA: Recv ZSGSRD 37245
17-03-17 21:22:51.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.428 -07 000000459 INF: FPGA: Recv ZSGSRD 37249
17-03-17 21:22:51.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:51.438 -07 000000501 INF: FPGA: Recv ZSGSRD 37248
17-03-17 21:22:51.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.448 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:22:51.448 -07 000000424 INF: FPGA: Recv ZPIEZORD 33792
17-03-17 21:22:51.458 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:51.458 -07 000000569 INF: Z Motor: Piezo is near 52.2 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.986 V. Piezo Error = -7.7 V.
17-03-17 21:22:51.458 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37245 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37245 (-178.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37242 (-178.7 uncal um), Max = 37249 (-178.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:22:51.458 -07 000000569 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37245, posNoise = 4, negNoise = 3
17-03-17 21:22:51.458 -07 000000569 INF: Z Motor: After move to -0.179588, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:22:51.458 -07 000000569 INF: Z Motor: Settle wait time = 4607 ms, measure time = 102 ms (allowed 150 ms), total time = 4709 ms
17-03-17 21:22:51.458 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:22:51.508 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 21:22:51.508 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:22:51.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:22:51.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:22:51.508 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:22:51.508 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:22:51.508 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:22:51.508 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:22:51.518 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:22:51.518 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:22:51.538 -07 000000012 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:22:51.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:22:51.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:22:51.538 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:22:51.558 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:22:51.558 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 21:22:51.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:22:51.598 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:22:51.798 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:22:51.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:22:51.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:22:51.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:22:51.838 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:22:51.838 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:22:51.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:22:51.868 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:51.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:22:51.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:51.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:22:51.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:22:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:52.038 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:22:52.038 -07 000000501 INF: Image SNR check: start
17-03-17 21:22:52.038 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:22:52.048 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:22:52.048 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:22:52.048 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=60.06]
17-03-17 21:22:52.048 -07 000000501 INF: Autofocus start
17-03-17 21:22:52.048 -07 000000501 INF: MeasureProfile start
17-03-17 21:22:52.068 -07 000000501 INF: MeasureProfile done
17-03-17 21:22:52.068 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:22:52.068 -07 000000501 INF: Autofocus finished
17-03-17 21:22:52.248 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:22:52.248 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:22:52.248 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179593133231022. ----------
17-03-17 21:22:52.248 -07 000000610 INF: Cycle	50	Tile	1	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:22:52.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37746, sync = True, waitForSettling = True)
17-03-17 21:22:52.258 -07 000000610 INF: Z Motor: Moving to -0.172790 mm, started at -0.179593 mm, distance = 6.80 um
17-03-17 21:22:52.258 -07 000000610 INF: FPGA: Xmit ZDACW 37746\n [Z Motor]
17-03-17 21:22:52.258 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:22:52.268 -07 000000610 INF: FPGA: 'ZDACW 37746' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:22:52.268 -07 000000415 INF: FPGA: Recv ZDACR 37746
17-03-17 21:22:52.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:22:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.428 -07 000000476 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:22:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.438 -07 000000547 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:22:52.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.448 -07 000000429 INF: FPGA: Recv ZSGSRD 36187
17-03-17 21:22:52.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:22:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.458 -07 000000480 INF: FPGA: Recv ZSGSRD 36187
17-03-17 21:22:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.468 -07 000000626 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:22:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.478 -07 000000459 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:22:52.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:22:52.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.498 -07 000000512 INF: FPGA: Recv ZSGSRD 36187
17-03-17 21:22:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.508 -07 000000576 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:22:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:52.518 -07 000000547 INF: FPGA: Recv ZSGSRD 36184
17-03-17 21:22:52.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:22:52.528 -07 000000382 INF: FPGA: Recv ZPIEZORD 32333
17-03-17 21:22:52.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:52.538 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.5 V.
17-03-17 21:22:52.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36187 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36187 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36179 (-171.9 uncal um), Max = 36192 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:22:52.538 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36187, posNoise = 5, negNoise = 8
17-03-17 21:22:52.538 -07 000000610 INF: Z Motor: After move to -0.172790, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:22:52.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:22:52.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:22:52.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:22:52.538 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:22:52.538 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:22:52.538 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:22:52.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:22:52.538 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:22:52.538 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:22:52.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:22:52.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:22:52.538 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:22:52.538 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:22:52.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:22:52.548 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:22:52.558 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:22:52.558 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:22:52.558 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:22:52.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:22:52.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:22:52.568 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:22:52.578 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:22:52.578 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 21:22:52.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37923 150\n [Camera]
17-03-17 21:22:52.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 21:22:53.208 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:22:53.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:22:53.208 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:22:53.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:22:53.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:22:53.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:22:53.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:22:53.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:22:53.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:22:53.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:22:53.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37923 816
17-03-17 21:22:53.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:22:53.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:22:53.618 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:22:53.618 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:53.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:22:53.618 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:22:53.618 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:53.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:22:53.628 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:22:53.628 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:22:53.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:22:53.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:22:53.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:22:53.758 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:22:53.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:22:53.768 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:22:53.768 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:22:53.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:22:53.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:22:53.888 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:22:53.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:22:53.888 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.985358,
17-03-17 21:22:53.948 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:22:53.948 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:22:53.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37923 150' command took 2 ms to send, 1369 ms to get response, and 1374 ms overall
17-03-17 21:22:53.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:22:53.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172796316785039. ------
17-03-17 21:22:53.958 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:22:53.958 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17918 mm
17-03-17 21:22:53.958 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:22:53.958 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:22:53.958 -07 000000476 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:22:53.958 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:22:53.958 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39142, sync = True, waitForSettling = False)
17-03-17 21:22:53.958 -07 000000012 INF: Z Motor: Moving to -0.179181 mm, started at -0.172796 mm, distance = -6.38 um
17-03-17 21:22:53.968 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:22:53.968 -07 000000012 INF: FPGA: Xmit ZDACW 39142\n [Z Motor]
17-03-17 21:22:53.968 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:22:53.978 -07 000000012 INF: FPGA: 'ZDACW 39142' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:22:53.978 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:53.978 -07 000000480 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:22:53.988 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:22:53.988 -07 000000476 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:53.988 -07 000000476 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:22:53.988 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:22:53.988 -07 000000476 INF: Y Motor: Moving 1332 steps2
17-03-17 21:22:53.998 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:22:53.998 -07 000000459 INF: FPGA: Recv ZDACR 39142
17-03-17 21:22:54.008 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:22:54.008 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:22:54.008 -07 000000012 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:22:54.158 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:22:54.158 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:22:54.158 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:54.158 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:22:54.158 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:22:54.188 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:22:54.188 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 21:22:54.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:22:54.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:22:54.278 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:54.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:22:54.288 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 21:22:54.388 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:22:54.388 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 21:22:54.418 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:54.418 -07 000000459 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:22:54.428 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:22:54.428 -07 000000476 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:54.428 -07 000000476 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:22:54.428 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 21:22:55.378 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:55.378 -07 000000459 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:22:55.388 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:22:55.388 -07 000000476 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:55.408 -07 000000476 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:22:55.408 -07 000000476 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:22:55.408 -07 000000476 INF: Y Motor: Moved to 60.7329 after 1446 ms (table move)
17-03-17 21:22:55.408 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179181 mm (DAC = 39142)
17-03-17 21:22:55.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.418 -07 000000475 INF: FPGA: Recv ZSGSRD 37191
17-03-17 21:22:55.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:22:55.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.418 -07 000000424 INF: FPGA: Recv ZSGSRD 37178
17-03-17 21:22:55.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:22:55.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.428 -07 000000012 INF: FPGA: Recv ZSGSRD 37182
17-03-17 21:22:55.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.438 -07 000000415 INF: FPGA: Recv ZSGSRD 37185
17-03-17 21:22:55.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.448 -07 000000627 INF: FPGA: Recv ZSGSRD 37183
17-03-17 21:22:55.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.458 -07 000000475 INF: FPGA: Recv ZSGSRD 37180
17-03-17 21:22:55.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.468 -07 000000429 INF: FPGA: Recv ZSGSRD 37180
17-03-17 21:22:55.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.478 -07 000000547 INF: FPGA: Recv ZSGSRD 37186
17-03-17 21:22:55.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.488 -07 000000458 INF: FPGA: Recv ZSGSRD 37182
17-03-17 21:22:55.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:55.498 -07 000000627 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:22:55.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.508 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:22:55.508 -07 000000576 INF: FPGA: Recv ZPIEZORD 33658
17-03-17 21:22:55.518 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:55.518 -07 000000512 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.973 V. Piezo Error = -7.8 V.
17-03-17 21:22:55.518 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37183 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37182 (-178.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37178 (-178.3 uncal um), Max = 37191 (-178.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:22:55.518 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37183, posNoise = 8, negNoise = 5
17-03-17 21:22:55.518 -07 000000512 INF: Z Motor: After move to -0.179181, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:22:55.518 -07 000000512 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:22:55.518 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:22:55.568 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:22:55.568 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:22:55.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:22:55.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:22:55.568 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:22:55.568 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:22:55.568 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:22:55.568 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:22:55.568 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:22:55.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:22:55.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:22:55.578 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:22:55.588 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:22:55.588 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:22:55.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:22:55.638 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:22:55.838 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:22:55.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:22:55.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:22:55.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) start.
17-03-17 21:22:55.878 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:22:55.878 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:22:55.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 21:22:55.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:22:55.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:55.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:22:55.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:22:55.978 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:22:55.978 -07 000000476 INF: Autofocus start
17-03-17 21:22:55.978 -07 000000476 INF: MeasureProfile start
17-03-17 21:22:55.988 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:22:55.988 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:22:55.988 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:22:55.988 -07 000000476 INF: MeasureProfile done
17-03-17 21:22:55.988 -07 000000476 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:22:55.988 -07 000000476 INF: Autofocus finished
17-03-17 21:22:56.188 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:22:56.188 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 21:22:56.198 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179194832078233. ----------
17-03-17 21:22:56.198 -07 000000610 INF: Cycle	50	Tile	2	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:22:56.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37621, sync = True, waitForSettling = True)
17-03-17 21:22:56.198 -07 000000610 INF: Z Motor: Moving to -0.172218 mm, started at -0.179195 mm, distance = 6.98 um
17-03-17 21:22:56.198 -07 000000610 INF: FPGA: Xmit ZDACW 37621\n [Z Motor]
17-03-17 21:22:56.198 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:22:56.208 -07 000000610 INF: FPGA: 'ZDACW 37621' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:22:56.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:22:56.208 -07 000000012 INF: FPGA: Recv ZDACR 37621
17-03-17 21:22:56.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:22:56.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36098
17-03-17 21:22:56.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:22:56.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.378 -07 000000480 INF: FPGA: Recv ZSGSRD 36096
17-03-17 21:22:56.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.388 -07 000000438 INF: FPGA: Recv ZSGSRD 36097
17-03-17 21:22:56.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.398 -07 000000431 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:22:56.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.408 -07 000000429 INF: FPGA: Recv ZSGSRD 36097
17-03-17 21:22:56.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.418 -07 000000576 INF: FPGA: Recv ZSGSRD 36099
17-03-17 21:22:56.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.428 -07 000000424 INF: FPGA: Recv ZSGSRD 36103
17-03-17 21:22:56.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.438 -07 000000459 INF: FPGA: Recv ZSGSRD 36093
17-03-17 21:22:56.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.448 -07 000000627 INF: FPGA: Recv ZSGSRD 36097
17-03-17 21:22:56.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:56.458 -07 000000626 INF: FPGA: Recv ZSGSRD 36098
17-03-17 21:22:56.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:22:56.468 -07 000000458 INF: FPGA: Recv ZPIEZORD 32209
17-03-17 21:22:56.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:56.478 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.6 V.
17-03-17 21:22:56.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36098 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36098 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36093 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:22:56.478 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36098, posNoise = 8, negNoise = 5
17-03-17 21:22:56.478 -07 000000610 INF: Z Motor: After move to -0.172218, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:22:56.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:22:56.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:22:56.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:22:56.478 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:22:56.478 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:22:56.478 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:22:56.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:22:56.478 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:22:56.478 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:22:56.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:22:56.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:22:56.478 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:22:56.478 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:22:56.488 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:22:56.488 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:22:56.488 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:22:56.488 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:22:56.498 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:22:56.498 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:22:56.498 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:22:56.498 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:22:56.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37798 150\n [Camera]
17-03-17 21:22:56.708 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:22:56.868 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:22:56.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:22:57.138 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:22:57.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:22:57.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:22:57.138 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:22:57.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:22:57.138 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:22:57.148 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:22:57.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:22:57.148 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:22:57.148 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:22:57.328 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37798 816
17-03-17 21:22:57.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:22:57.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:22:57.528 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:22:57.528 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:57.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:22:57.538 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:22:57.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:57.538 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:22:57.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:22:57.538 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:22:57.538 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:22:57.688 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:22:57.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:22:57.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:22:57.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:22:57.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:22:57.798 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:22:57.798 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:22:57.798 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:22:57.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:22:57.798 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:22:57.878 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:22:57.878 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:22:57.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37798 150' command took 2 ms to send, 1363 ms to get response, and 1373 ms overall
17-03-17 21:22:57.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:22:57.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172224561904422. ------
17-03-17 21:22:57.878 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:22:57.878 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17847 mm
17-03-17 21:22:57.878 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:22:57.888 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:22:57.888 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:22:57.888 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:57.888 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38986, sync = True, waitForSettling = False)
17-03-17 21:22:57.888 -07 000000458 INF: Z Motor: Moving to -0.178466 mm, started at -0.172225 mm, distance = -6.24 um
17-03-17 21:22:57.888 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:22:57.888 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:22:57.888 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:22:57.898 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:22:57.898 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:22:57.898 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:57.898 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:22:57.898 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:22:57.908 -07 000000458 INF: FPGA: Xmit ZDACW 38986\n [Z Motor]
17-03-17 21:22:57.908 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:22:57.918 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:22:57.918 -07 000000458 INF: FPGA: 'ZDACW 38986' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:22:57.928 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:22:57.928 -07 000000431 INF: FPGA: Recv ZDACR 38986
17-03-17 21:22:57.938 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:22:57.938 -07 000000458 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:22:58.098 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:22:58.098 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 21:22:58.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:22:58.208 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:22:58.208 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:58.208 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:22:58.208 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:22:58.208 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:58.208 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:22:58.208 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:22:58.208 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 21:22:58.218 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:22:58.298 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:22:58.298 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 21:22:58.328 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:58.338 -07 000000438 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:22:58.338 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:22:58.338 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:58.338 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:22:58.338 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-17 21:22:59.258 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.024884,
17-03-17 21:22:59.288 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:22:59.288 -07 000000431 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:22:59.298 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.298 -07 000000501 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:22:59.318 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:22:59.318 -07 000000501 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:22:59.318 -07 000000501 INF: Y Motor: Moved to 61.5635 after 1434 ms (table move)
17-03-17 21:22:59.318 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178466 mm (DAC = 38986)
17-03-17 21:22:59.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.328 -07 000000429 INF: FPGA: Recv ZSGSRD 37083
17-03-17 21:22:59.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:22:59.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.328 -07 000000476 INF: FPGA: Recv ZSGSRD 37064
17-03-17 21:22:59.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:22:59.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.338 -07 000000480 INF: FPGA: Recv ZSGSRD 37071
17-03-17 21:22:59.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.348 -07 000000569 INF: FPGA: Recv ZSGSRD 37076
17-03-17 21:22:59.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.358 -07 000000012 INF: FPGA: Recv ZSGSRD 37067
17-03-17 21:22:59.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.368 -07 000000431 INF: FPGA: Recv ZSGSRD 37074
17-03-17 21:22:59.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.378 -07 000000627 INF: FPGA: Recv ZSGSRD 37071
17-03-17 21:22:59.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.388 -07 000000480 INF: FPGA: Recv ZSGSRD 37066
17-03-17 21:22:59.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.398 -07 000000576 INF: FPGA: Recv ZSGSRD 37073
17-03-17 21:22:59.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.408 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:22:59.408 -07 000000547 INF: FPGA: Recv ZSGSRD 37070
17-03-17 21:22:59.418 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.418 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:22:59.418 -07 000000476 INF: FPGA: Recv ZPIEZORD 33473
17-03-17 21:22:59.428 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:22:59.428 -07 000000459 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.0 V.
17-03-17 21:22:59.428 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37072 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37071 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37064 (-177.5 uncal um), Max = 37083 (-177.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:22:59.428 -07 000000459 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37072, posNoise = 11, negNoise = 8
17-03-17 21:22:59.428 -07 000000459 INF: Z Motor: After move to -0.178466, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:22:59.428 -07 000000459 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:22:59.428 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:22:59.478 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:22:59.478 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:22:59.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:22:59.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:22:59.478 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:22:59.478 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:22:59.478 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:22:59.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:22:59.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:22:59.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:22:59.488 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:22:59.488 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:22:59.498 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:22:59.498 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:22:59.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:22:59.538 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:22:59.738 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:22:59.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:22:59.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:22:59.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:22:59.778 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:22:59.778 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:22:59.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:22:59.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:22:59.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:22:59.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:22:59.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:22:59.978 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:22:59.978 -07 000000382 INF: Autofocus start
17-03-17 21:22:59.978 -07 000000382 INF: MeasureProfile start
17-03-17 21:22:59.978 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:22:59.988 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:22:59.988 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:22:59.988 -07 000000382 INF: MeasureProfile done
17-03-17 21:22:59.988 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:22:59.988 -07 000000382 INF: Autofocus finished
17-03-17 21:23:00.188 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:00.188 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 21:23:00.188 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178481744530497. ----------
17-03-17 21:23:00.188 -07 000000610 INF: Cycle	50	Tile	3	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:00.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37501, sync = True, waitForSettling = True)
17-03-17 21:23:00.198 -07 000000610 INF: Z Motor: Moving to -0.171669 mm, started at -0.178482 mm, distance = 6.81 um
17-03-17 21:23:00.198 -07 000000610 INF: FPGA: Xmit ZDACW 37501\n [Z Motor]
17-03-17 21:23:00.198 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:23:00.208 -07 000000610 INF: FPGA: 'ZDACW 37501' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:00.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:00.208 -07 000000627 INF: FPGA: Recv ZDACR 37501
17-03-17 21:23:00.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:00.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36010
17-03-17 21:23:00.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:00.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.378 -07 000000415 INF: FPGA: Recv ZSGSRD 36014
17-03-17 21:23:00.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.388 -07 000000429 INF: FPGA: Recv ZSGSRD 36012
17-03-17 21:23:00.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.398 -07 000000012 INF: FPGA: Recv ZSGSRD 36011
17-03-17 21:23:00.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.408 -07 000000627 INF: FPGA: Recv ZSGSRD 36015
17-03-17 21:23:00.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.418 -07 000000480 INF: FPGA: Recv ZSGSRD 36013
17-03-17 21:23:00.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.428 -07 000000415 INF: FPGA: Recv ZSGSRD 36015
17-03-17 21:23:00.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36012
17-03-17 21:23:00.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.448 -07 000000475 INF: FPGA: Recv ZSGSRD 36009
17-03-17 21:23:00.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:00.458 -07 000000512 INF: FPGA: Recv ZSGSRD 36017
17-03-17 21:23:00.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:00.468 -07 000000626 INF: FPGA: Recv ZPIEZORD 32086
17-03-17 21:23:00.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:00.478 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.7 V.
17-03-17 21:23:00.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36013 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36009 (-170.8 uncal um), Max = 36017 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:23:00.478 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36013, posNoise = 4, negNoise = 4
17-03-17 21:23:00.478 -07 000000610 INF: Z Motor: After move to -0.171669, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:00.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:00.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:00.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:00.478 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:00.478 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:00.478 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:00.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:00.478 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:00.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:00.478 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:00.478 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:00.488 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:23:00.488 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:00.488 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:23:00.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:00.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:00.488 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:00.488 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:23:00.488 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:00.498 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:00.498 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:23:00.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37678 150\n [Camera]
17-03-17 21:23:00.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:01.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:01.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:01.128 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:01.128 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:01.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:23:01.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:01.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:01.128 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:01.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:01.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:23:01.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37678 816
17-03-17 21:23:01.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:01.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:23:01.518 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:23:01.518 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:01.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:23:01.518 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:23:01.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:01.518 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:01.518 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:23:01.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:01.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:23:01.678 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:01.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:01.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:01.688 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:01.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:23:01.688 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:01.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:01.688 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:01.688 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:01.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:23:01.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:01.868 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:01.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37678 150' command took 2 ms to send, 1367 ms to get response, and 1372 ms overall
17-03-17 21:23:01.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:01.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171678503872372. ------
17-03-17 21:23:01.878 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:01.878 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:01.878 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17797 mm
17-03-17 21:23:01.878 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:01.878 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38878, sync = True, waitForSettling = False)
17-03-17 21:23:01.878 -07 000000576 INF: Z Motor: Moving to -0.177972 mm, started at -0.171679 mm, distance = -6.29 um
17-03-17 21:23:01.878 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:23:01.878 -07 000000415 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:23:01.878 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:01.888 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:01.888 -07 000000576 INF: FPGA: Xmit ZDACW 38878\n [Z Motor]
17-03-17 21:23:01.888 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:23:01.898 -07 000000576 INF: FPGA: 'ZDACW 38878' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:23:01.898 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:02.008 -07 000000438 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:23:02.018 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:02.018 -07 000000415 INF: FPGA: 'YRDPOS' command took 116 ms to send, 0 ms to get response, and 133 ms overall
17-03-17 21:23:02.018 -07 000000415 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:02.018 -07 000000415 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:02.018 -07 000000415 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:23:02.028 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:02.028 -07 000000382 INF: FPGA: Recv ZDACR 38878
17-03-17 21:23:02.038 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:02.038 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 21:23:02.038 -07 000000576 INF: Z Motor: MoveAbsStepped took 154 ms (did NOT wait for settling yet))
17-03-17 21:23:02.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:23:02.068 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:23:02.068 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:02.068 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:23:02.068 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:23:02.068 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:02.068 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:02.068 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:23:02.068 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:02.078 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:23:02.218 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:02.218 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 332 ms overall
17-03-17 21:23:02.408 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:23:02.408 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:02.448 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:02.448 -07 000000438 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:23:02.458 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:23:02.458 -07 000000415 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:02.458 -07 000000415 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:23:02.458 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:23:03.408 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:03.408 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:23:03.418 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:03.418 -07 000000415 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:03.438 -07 000000415 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:03.438 -07 000000415 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:03.438 -07 000000415 INF: Y Motor: Moved to 62.3950 after 1557 ms (table move)
17-03-17 21:23:03.438 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177972 mm (DAC = 38878)
17-03-17 21:23:03.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.438 -07 000000438 INF: FPGA: Recv ZSGSRD 36996
17-03-17 21:23:03.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:03.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.448 -07 000000431 INF: FPGA: Recv ZSGSRD 37001
17-03-17 21:23:03.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.458 -07 000000480 INF: FPGA: Recv ZSGSRD 36992
17-03-17 21:23:03.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.468 -07 000000382 INF: FPGA: Recv ZSGSRD 37003
17-03-17 21:23:03.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36995
17-03-17 21:23:03.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.488 -07 000000547 INF: FPGA: Recv ZSGSRD 36999
17-03-17 21:23:03.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.498 -07 000000382 INF: FPGA: Recv ZSGSRD 36995
17-03-17 21:23:03.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.508 -07 000000476 INF: FPGA: Recv ZSGSRD 36986
17-03-17 21:23:03.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.518 -07 000000608 INF: FPGA: Recv ZSGSRD 36992
17-03-17 21:23:03.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:03.528 -07 000000429 INF: FPGA: Recv ZSGSRD 36994
17-03-17 21:23:03.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.538 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:03.538 -07 000000576 INF: FPGA: Recv ZPIEZORD 33410
17-03-17 21:23:03.548 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:03.548 -07 000000458 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.0 V.
17-03-17 21:23:03.548 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36995 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36995 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36986 (-177.0 uncal um), Max = 37003 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:23:03.548 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36995, posNoise = 8, negNoise = 9
17-03-17 21:23:03.548 -07 000000458 INF: Z Motor: After move to -0.177972, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:03.548 -07 000000458 INF: Z Motor: Settle wait time = 1561 ms, measure time = 103 ms (allowed 150 ms), total time = 1664 ms
17-03-17 21:23:03.548 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:03.598 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 21:23:03.598 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:03.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:03.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:03.598 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:03.598 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:03.598 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:03.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:03.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:03.598 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:03.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:03.608 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:03.618 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:23:03.618 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:23:03.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:03.668 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:03.868 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:03.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:03.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:03.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:03.908 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:03.908 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:03.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 272 ms to get response, and 285 ms overall
17-03-17 21:23:03.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:23:03.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:03.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:03.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:23:04.008 -07 000000475 INF: Autofocus start
17-03-17 21:23:04.008 -07 000000475 INF: MeasureProfile start
17-03-17 21:23:04.008 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:04.008 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:04.018 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:04.018 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:04.018 -07 000000475 INF: MeasureProfile done
17-03-17 21:23:04.018 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:23:04.018 -07 000000475 INF: Autofocus finished
17-03-17 21:23:04.218 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:04.218 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:04.218 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177987080195582. ----------
17-03-17 21:23:04.218 -07 000000610 INF: Cycle	50	Tile	4	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:04.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37410, sync = True, waitForSettling = True)
17-03-17 21:23:04.228 -07 000000610 INF: Z Motor: Moving to -0.171252 mm, started at -0.177987 mm, distance = 6.74 um
17-03-17 21:23:04.228 -07 000000610 INF: FPGA: Xmit ZDACW 37410\n [Z Motor]
17-03-17 21:23:04.228 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:23:04.238 -07 000000610 INF: FPGA: 'ZDACW 37410' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:04.238 -07 000000480 INF: FPGA: Recv ZDACR 37410
17-03-17 21:23:04.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:04.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35949
17-03-17 21:23:04.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:04.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.408 -07 000000424 INF: FPGA: Recv ZSGSRD 35948
17-03-17 21:23:04.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.418 -07 000000608 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:23:04.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35949
17-03-17 21:23:04.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35942
17-03-17 21:23:04.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.448 -07 000000476 INF: FPGA: Recv ZSGSRD 35950
17-03-17 21:23:04.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35946
17-03-17 21:23:04.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35949
17-03-17 21:23:04.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35950
17-03-17 21:23:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:04.488 -07 000000458 INF: FPGA: Recv ZSGSRD 35949
17-03-17 21:23:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:04.498 -07 000000480 INF: FPGA: Recv ZPIEZORD 32003
17-03-17 21:23:04.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:04.508 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.7 V.
17-03-17 21:23:04.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35948 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35949 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35942 (-170.3 uncal um), Max = 35952 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:23:04.508 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35948, posNoise = 4, negNoise = 6
17-03-17 21:23:04.508 -07 000000610 INF: Z Motor: After move to -0.171252, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:04.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:04.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:04.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:04.508 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:04.508 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:04.508 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:04.508 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:04.508 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:04.508 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:04.508 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:04.508 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:04.508 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:04.508 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:04.518 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:04.518 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:04.518 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:04.518 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:04.518 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:04.518 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:23:04.518 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:04.518 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:04.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37587 150\n [Camera]
17-03-17 21:23:04.638 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.045313,
17-03-17 21:23:04.728 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:05.158 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:05.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:05.158 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:05.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:05.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:05.158 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:05.168 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:05.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:23:05.168 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:05.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:23:05.348 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37587 816
17-03-17 21:23:05.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:05.548 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:23:05.548 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:23:05.548 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:05.548 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:23:05.548 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:23:05.548 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:05.548 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:05.548 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:23:05.548 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:05.558 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:23:05.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:05.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:05.708 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:05.708 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:05.708 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:05.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:05.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:23:05.718 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:05.718 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:05.718 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:23:05.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:05.898 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:05.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37587 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:23:05.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:05.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171260930083158. ------
17-03-17 21:23:05.908 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:05.908 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17781 mm
17-03-17 21:23:05.908 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:05.908 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38842, sync = True, waitForSettling = False)
17-03-17 21:23:05.908 -07 000000012 INF: Z Motor: Moving to -0.177807 mm, started at -0.171261 mm, distance = -6.55 um
17-03-17 21:23:05.908 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:05.908 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:23:05.908 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:23:05.918 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:05.918 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:05.918 -07 000000627 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:23:05.928 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:23:05.928 -07 000000626 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:05.928 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:05.928 -07 000000626 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:23:05.928 -07 000000012 INF: FPGA: Xmit ZDACW 38842\n [Z Motor]
17-03-17 21:23:05.928 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:23:05.938 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:05.938 -07 000000012 INF: FPGA: 'ZDACW 38842' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:23:05.948 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:05.958 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:05.958 -07 000000480 INF: FPGA: Recv ZDACR 38842
17-03-17 21:23:05.968 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:23:05.968 -07 000000012 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:23:06.108 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:23:06.108 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:23:06.108 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:06.108 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:23:06.108 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:23:06.108 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:06.108 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:06.108 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:23:06.108 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:06.118 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:23:06.138 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:06.138 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:23:06.318 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:23:06.318 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:06.358 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:06.358 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:23:06.368 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:23:06.368 -07 000000626 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:06.368 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:23:06.368 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 21:23:06.868 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:07.318 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:07.318 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:23:07.328 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.328 -07 000000626 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:07.348 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:07.348 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:07.348 -07 000000626 INF: Y Motor: Moved to 63.2236 after 1440 ms (table move)
17-03-17 21:23:07.348 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177807 mm (DAC = 38842)
17-03-17 21:23:07.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.358 -07 000000382 INF: FPGA: Recv ZSGSRD 36975
17-03-17 21:23:07.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:23:07.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.358 -07 000000547 INF: FPGA: Recv ZSGSRD 36966
17-03-17 21:23:07.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:07.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36966
17-03-17 21:23:07.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36968
17-03-17 21:23:07.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.388 -07 000000475 INF: FPGA: Recv ZSGSRD 36961
17-03-17 21:23:07.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36977
17-03-17 21:23:07.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.408 -07 000000382 INF: FPGA: Recv ZSGSRD 36975
17-03-17 21:23:07.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.418 -07 000000429 INF: FPGA: Recv ZSGSRD 36968
17-03-17 21:23:07.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.428 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.428 -07 000000627 INF: FPGA: Recv ZSGSRD 36963
17-03-17 21:23:07.438 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.438 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:07.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36968
17-03-17 21:23:07.448 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.448 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:07.448 -07 000000576 INF: FPGA: Recv ZPIEZORD 33409
17-03-17 21:23:07.458 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:07.458 -07 000000608 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -7.9 V.
17-03-17 21:23:07.458 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36969 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36968 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36961 (-176.9 uncal um), Max = 36977 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:23:07.458 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36969, posNoise = 8, negNoise = 8
17-03-17 21:23:07.458 -07 000000608 INF: Z Motor: After move to -0.177807, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:07.458 -07 000000608 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:23:07.458 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:07.508 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:23:07.508 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:07.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:07.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:07.508 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:07.508 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:07.508 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:07.508 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:07.508 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:07.508 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:07.508 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:07.508 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:07.518 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:23:07.518 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:23:07.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:07.568 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:07.768 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:07.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:07.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:07.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:23:07.808 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:07.808 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:07.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:23:07.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:23:07.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:07.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:07.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:23:07.908 -07 000000608 INF: Autofocus start
17-03-17 21:23:07.908 -07 000000608 INF: MeasureProfile start
17-03-17 21:23:07.908 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:07.908 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:07.918 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:07.918 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:07.918 -07 000000608 INF: MeasureProfile done
17-03-17 21:23:07.918 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:07.918 -07 000000608 INF: Autofocus finished
17-03-17 21:23:08.118 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:08.118 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:08.118 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177820050679896. ----------
17-03-17 21:23:08.118 -07 000000610 INF: Cycle	50	Tile	5	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:08.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37357, sync = True, waitForSettling = True)
17-03-17 21:23:08.128 -07 000000610 INF: Z Motor: Moving to -0.171009 mm, started at -0.177820 mm, distance = 6.81 um
17-03-17 21:23:08.128 -07 000000610 INF: FPGA: Xmit ZDACW 37357\n [Z Motor]
17-03-17 21:23:08.128 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:23:08.138 -07 000000610 INF: FPGA: 'ZDACW 37357' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:08.138 -07 000000547 INF: FPGA: Recv ZDACR 37357
17-03-17 21:23:08.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:08.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.298 -07 000000431 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:23:08.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.308 -07 000000576 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:23:08.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:23:08.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.328 -07 000000480 INF: FPGA: Recv ZSGSRD 35905
17-03-17 21:23:08.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.338 -07 000000476 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:23:08.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35913
17-03-17 21:23:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35909
17-03-17 21:23:08.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.368 -07 000000012 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:23:08.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.378 -07 000000608 INF: FPGA: Recv ZSGSRD 35907
17-03-17 21:23:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:08.388 -07 000000424 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:23:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:08.398 -07 000000501 INF: FPGA: Recv ZPIEZORD 31976
17-03-17 21:23:08.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:08.408 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -8.7 V.
17-03-17 21:23:08.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35910 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35910 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35905 (-170.1 uncal um), Max = 35915 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:23:08.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35910, posNoise = 5, negNoise = 5
17-03-17 21:23:08.408 -07 000000610 INF: Z Motor: After move to -0.171009, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:08.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:08.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:08.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:08.408 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:08.408 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:08.408 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:08.408 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:08.408 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:08.408 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:08.408 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:08.408 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:08.408 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:08.408 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:08.418 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:08.418 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:08.418 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:08.418 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:08.418 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:08.418 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:08.428 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:23:08.428 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:23:08.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37534 150\n [Camera]
17-03-17 21:23:08.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:09.058 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:09.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:09.058 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:09.058 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:09.058 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:23:09.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:09.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:09.058 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:09.058 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:09.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:23:09.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37534 816
17-03-17 21:23:09.398 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:09.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:23:09.438 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:23:09.438 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:09.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:23:09.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:23:09.438 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:09.438 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:09.448 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:09.448 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:23:09.448 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:23:09.608 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:09.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:09.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:09.608 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:09.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:23:09.608 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:09.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:09.608 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:09.608 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:09.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:23:09.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:09.798 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:09.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37534 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:23:09.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:09.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.171016810021771. ------
17-03-17 21:23:09.928 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:09.928 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17751 mm
17-03-17 21:23:09.928 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:09.928 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:09.928 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:23:09.928 -07 000000429 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:23:09.928 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38778, sync = True, waitForSettling = False)
17-03-17 21:23:09.928 -07 000000431 INF: Z Motor: Moving to -0.177514 mm, started at -0.171017 mm, distance = -6.50 um
17-03-17 21:23:09.938 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:09.938 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:09.938 -07 000000458 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:23:09.948 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:23:09.948 -07 000000429 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:09.948 -07 000000429 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:09.948 -07 000000429 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:23:09.948 -07 000000431 INF: FPGA: Xmit ZDACW 38778\n [Z Motor]
17-03-17 21:23:09.948 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:23:09.958 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:09.958 -07 000000431 INF: FPGA: 'ZDACW 38778' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:23:09.968 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:09.978 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:09.978 -07 000000382 INF: FPGA: Recv ZDACR 38778
17-03-17 21:23:09.988 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:09.988 -07 000000431 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:23:09.998 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.045313,
17-03-17 21:23:10.008 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:23:10.008 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:23:10.018 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:10.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 21:23:10.018 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:23:10.018 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:10.018 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:10.018 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:23:10.018 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:23:10.028 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:23:10.158 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:10.158 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:23:10.338 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:23:10.338 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:10.378 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:10.388 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:23:10.388 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:23:10.388 -07 000000429 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:10.388 -07 000000429 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:23:10.388 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 21:23:11.338 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:11.338 -07 000000459 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:23:11.348 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:11.348 -07 000000429 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:11.368 -07 000000429 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:11.368 -07 000000429 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:23:11.368 -07 000000429 INF: Y Motor: Moved to 64.0566 after 1439 ms (table move)
17-03-17 21:23:11.368 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177514 mm (DAC = 38778)
17-03-17 21:23:11.368 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.378 -07 000000424 INF: FPGA: Recv ZSGSRD 36927
17-03-17 21:23:11.378 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:11.378 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.378 -07 000000627 INF: FPGA: Recv ZSGSRD 36927
17-03-17 21:23:11.388 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.388 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.388 -07 000000480 INF: FPGA: Recv ZSGSRD 36920
17-03-17 21:23:11.398 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.398 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.398 -07 000000547 INF: FPGA: Recv ZSGSRD 36918
17-03-17 21:23:11.408 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.408 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.408 -07 000000429 INF: FPGA: Recv ZSGSRD 36929
17-03-17 21:23:11.418 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.418 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.418 -07 000000012 INF: FPGA: Recv ZSGSRD 36921
17-03-17 21:23:11.428 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.428 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.428 -07 000000475 INF: FPGA: Recv ZSGSRD 36922
17-03-17 21:23:11.438 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.438 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.438 -07 000000480 INF: FPGA: Recv ZSGSRD 36922
17-03-17 21:23:11.448 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.448 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.448 -07 000000415 INF: FPGA: Recv ZSGSRD 36918
17-03-17 21:23:11.458 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.458 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:11.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36923
17-03-17 21:23:11.468 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.468 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:11.468 -07 000000458 INF: FPGA: Recv ZPIEZORD 33338
17-03-17 21:23:11.478 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:11.478 -07 000000438 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.0 V.
17-03-17 21:23:11.478 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36923 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36922 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36918 (-176.6 uncal um), Max = 36929 (-176.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:23:11.478 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36923, posNoise = 6, negNoise = 5
17-03-17 21:23:11.478 -07 000000438 INF: Z Motor: After move to -0.177514, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:11.478 -07 000000438 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:23:11.478 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:11.528 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:23:11.528 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:11.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:11.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:11.528 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:11.528 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:11.528 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:11.528 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:11.528 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:11.528 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:11.538 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:11.538 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:11.548 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:23:11.548 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:23:11.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:11.598 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:11.798 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:11.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:11.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:11.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:11.838 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:11.838 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:11.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:23:11.868 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:11.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:23:11.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:11.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:11.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:23:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:11.938 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:11.938 -07 000000459 INF: Autofocus start
17-03-17 21:23:11.938 -07 000000459 INF: MeasureProfile start
17-03-17 21:23:11.938 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:11.948 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:11.948 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:11.948 -07 000000459 INF: MeasureProfile done
17-03-17 21:23:11.948 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:23:11.948 -07 000000459 INF: Autofocus finished
17-03-17 21:23:12.148 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:12.148 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:12.148 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177524536921375. ----------
17-03-17 21:23:12.148 -07 000000610 INF: Cycle	50	Tile	6	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:12.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37275, sync = True, waitForSettling = True)
17-03-17 21:23:12.158 -07 000000610 INF: Z Motor: Moving to -0.170634 mm, started at -0.177525 mm, distance = 6.89 um
17-03-17 21:23:12.158 -07 000000610 INF: FPGA: Xmit ZDACW 37275\n [Z Motor]
17-03-17 21:23:12.158 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:23:12.168 -07 000000610 INF: FPGA: 'ZDACW 37275' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:12.168 -07 000000626 INF: FPGA: Recv ZDACR 37275
17-03-17 21:23:12.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.328 -07 000000475 INF: FPGA: Recv ZSGSRD 35856
17-03-17 21:23:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35860
17-03-17 21:23:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35850
17-03-17 21:23:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35850
17-03-17 21:23:12.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.368 -07 000000626 INF: FPGA: Recv ZSGSRD 35853
17-03-17 21:23:12.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 7 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.378 -07 000000576 INF: FPGA: Recv ZSGSRD 35856
17-03-17 21:23:12.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.388 -07 000000626 INF: FPGA: Recv ZSGSRD 35850
17-03-17 21:23:12.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35851
17-03-17 21:23:12.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.408 -07 000000012 INF: FPGA: Recv ZSGSRD 35853
17-03-17 21:23:12.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:12.418 -07 000000576 INF: FPGA: Recv ZSGSRD 35848
17-03-17 21:23:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:12.428 -07 000000012 INF: FPGA: Recv ZPIEZORD 31925
17-03-17 21:23:12.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:12.438 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.688 V. Piezo Error = -8.7 V.
17-03-17 21:23:12.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35853 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35852 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35848 (-169.7 uncal um), Max = 35860 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:23:12.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35853, posNoise = 7, negNoise = 5
17-03-17 21:23:12.438 -07 000000610 INF: Z Motor: After move to -0.170634, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:12.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:12.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:12.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:12.438 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:12.438 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:12.438 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:12.438 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:12.438 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:12.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:12.438 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:23:12.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:12.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:12.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:12.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:12.438 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:12.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:12.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:12.448 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:23:12.448 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:12.448 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:12.448 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:12.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37452 150\n [Camera]
17-03-17 21:23:12.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:13.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:13.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:13.088 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:13.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:13.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:13.088 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:13.098 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:13.098 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:23:13.098 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:13.098 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:23:13.278 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37452 816
17-03-17 21:23:13.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:13.478 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:23:13.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:23:13.478 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:23:13.478 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:13.478 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:23:13.478 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:13.478 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:13.478 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:23:13.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:13.488 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:23:13.638 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:13.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:13.638 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:13.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:13.638 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:13.638 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 21:23:13.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:13.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:13.638 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:13.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:23:13.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:13.828 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:13.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37452 150' command took 2 ms to send, 1364 ms to get response, and 1373 ms overall
17-03-17 21:23:13.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:13.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170650629929691. ------
17-03-17 21:23:13.948 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:13.948 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17715 mm
17-03-17 21:23:13.948 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:13.948 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:13.948 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:23:13.948 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:23:13.948 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38699, sync = True, waitForSettling = False)
17-03-17 21:23:13.948 -07 000000431 INF: Z Motor: Moving to -0.177153 mm, started at -0.170651 mm, distance = -6.50 um
17-03-17 21:23:13.958 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:13.958 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:13.958 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:23:13.968 -07 000000431 INF: FPGA: Xmit ZDACW 38699\n [Z Motor]
17-03-17 21:23:13.968 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:23:13.968 -07 000000429 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:13.968 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:13.968 -07 000000429 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:23:13.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:23:13.978 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:13.978 -07 000000431 INF: FPGA: 'ZDACW 38699' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:23:13.988 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:13.998 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:13.998 -07 000000576 INF: FPGA: Recv ZDACR 38699
17-03-17 21:23:14.008 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:14.008 -07 000000431 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:23:14.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:23:14.028 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:23:14.028 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:14.028 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:23:14.028 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:23:14.028 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:14.028 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:14.028 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:14.028 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:23:14.038 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:23:14.178 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:14.178 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:23:14.358 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:23:14.358 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:14.398 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:14.398 -07 000000415 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:23:14.408 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:23:14.408 -07 000000429 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:14.408 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:23:14.408 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 21:23:15.368 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.023489,
17-03-17 21:23:15.378 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:15.378 -07 000000459 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:23:15.388 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:15.388 -07 000000429 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:15.408 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:15.408 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:15.408 -07 000000429 INF: Y Motor: Moved to 64.8784 after 1458 ms (table move)
17-03-17 21:23:15.408 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177153 mm (DAC = 38699)
17-03-17 21:23:15.428 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.428 -07 000000438 INF: FPGA: Recv ZSGSRD 36869
17-03-17 21:23:15.438 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:23:15.438 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.438 -07 000000512 INF: FPGA: Recv ZSGSRD 36873
17-03-17 21:23:15.448 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.448 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.448 -07 000000608 INF: FPGA: Recv ZSGSRD 36868
17-03-17 21:23:15.458 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.458 -07 000000501 INF: FPGA: Recv ZSGSRD 36871
17-03-17 21:23:15.468 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.468 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.468 -07 000000458 INF: FPGA: Recv ZSGSRD 36862
17-03-17 21:23:15.478 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.478 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.478 -07 000000627 INF: FPGA: Recv ZSGSRD 36856
17-03-17 21:23:15.488 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.488 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.488 -07 000000415 INF: FPGA: Recv ZSGSRD 36863
17-03-17 21:23:15.498 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.498 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.498 -07 000000569 INF: FPGA: Recv ZSGSRD 36870
17-03-17 21:23:15.508 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.508 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36867
17-03-17 21:23:15.518 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.518 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:15.518 -07 000000458 INF: FPGA: Recv ZSGSRD 36868
17-03-17 21:23:15.528 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.528 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:15.528 -07 000000627 INF: FPGA: Recv ZPIEZORD 33261
17-03-17 21:23:15.538 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:15.538 -07 000000626 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.905 V. Piezo Error = -8.0 V.
17-03-17 21:23:15.538 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36867 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36868 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36856 (-176.2 uncal um), Max = 36873 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:23:15.538 -07 000000626 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36867, posNoise = 6, negNoise = 11
17-03-17 21:23:15.538 -07 000000626 INF: Z Motor: After move to -0.177153, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:15.538 -07 000000626 INF: Z Motor: Settle wait time = 1461 ms, measure time = 121 ms (allowed 150 ms), total time = 1582 ms
17-03-17 21:23:15.538 -07 000000626 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:15.568 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 21:23:15.568 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:15.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:15.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:15.568 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:15.568 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:15.568 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:15.568 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:15.578 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:15.578 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:15.578 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:15.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:15.588 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:23:15.588 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:23:15.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:15.628 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:15.828 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:15.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:15.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:15.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:15.868 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:15.868 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:15.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 21:23:15.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:23:15.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:15.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:15.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:23:15.968 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:15.968 -07 000000626 INF: Autofocus start
17-03-17 21:23:15.968 -07 000000626 INF: MeasureProfile start
17-03-17 21:23:15.968 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:15.978 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:15.978 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:15.988 -07 000000626 INF: MeasureProfile done
17-03-17 21:23:15.988 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:15.988 -07 000000626 INF: Autofocus finished
17-03-17 21:23:16.178 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:16.178 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 21:23:16.178 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177164781041436. ----------
17-03-17 21:23:16.188 -07 000000610 INF: Cycle	50	Tile	7	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:16.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37214, sync = True, waitForSettling = True)
17-03-17 21:23:16.188 -07 000000610 INF: Z Motor: Moving to -0.170355 mm, started at -0.177165 mm, distance = 6.81 um
17-03-17 21:23:16.188 -07 000000610 INF: FPGA: Xmit ZDACW 37214\n [Z Motor]
17-03-17 21:23:16.188 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:23:16.198 -07 000000610 INF: FPGA: 'ZDACW 37214' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:23:16.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:16.198 -07 000000501 INF: FPGA: Recv ZDACR 37214
17-03-17 21:23:16.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.358 -07 000000547 INF: FPGA: Recv ZSGSRD 35805
17-03-17 21:23:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.368 -07 000000475 INF: FPGA: Recv ZSGSRD 35810
17-03-17 21:23:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.378 -07 000000576 INF: FPGA: Recv ZSGSRD 35811
17-03-17 21:23:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.388 -07 000000547 INF: FPGA: Recv ZSGSRD 35807
17-03-17 21:23:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.398 -07 000000475 INF: FPGA: Recv ZSGSRD 35811
17-03-17 21:23:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35806
17-03-17 21:23:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.418 -07 000000431 INF: FPGA: Recv ZSGSRD 35811
17-03-17 21:23:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.428 -07 000000012 INF: FPGA: Recv ZSGSRD 35807
17-03-17 21:23:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.438 -07 000000627 INF: FPGA: Recv ZSGSRD 35804
17-03-17 21:23:16.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:16.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35812
17-03-17 21:23:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:16.458 -07 000000569 INF: FPGA: Recv ZPIEZORD 31841
17-03-17 21:23:16.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:16.468 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.8 V.
17-03-17 21:23:16.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35804 (-169.5 uncal um), Max = 35812 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:23:16.468 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 4, negNoise = 4
17-03-17 21:23:16.468 -07 000000610 INF: Z Motor: After move to -0.170355, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:16.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:23:16.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:16.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:16.468 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:16.468 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:16.468 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:16.468 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:16.468 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:16.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:16.468 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:23:16.468 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:16.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:16.468 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:16.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:16.478 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:16.478 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:23:16.478 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:16.478 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:16.478 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:16.488 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:23:16.488 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:23:16.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37390 150\n [Camera]
17-03-17 21:23:16.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:16.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:16.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:17.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:17.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:17.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:17.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:17.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:17.118 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:17.128 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:17.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:17.128 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:17.128 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:23:17.308 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37390 816
17-03-17 21:23:17.458 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:17.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:23:17.508 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:23:17.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:17.508 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:17.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:23:17.508 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:23:17.508 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:17.518 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:17.518 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:23:17.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:23:17.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:17.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:17.668 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:17.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:17.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:17.668 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:17.668 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:17.668 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:23:17.678 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:17.678 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:23:17.858 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:17.858 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:17.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37390 150' command took 2 ms to send, 1366 ms to get response, and 1373 ms overall
17-03-17 21:23:17.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:17.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170361540383311. ------
17-03-17 21:23:17.868 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:17.868 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17693 mm
17-03-17 21:23:17.868 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:17.868 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:23:17.868 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:23:17.868 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38651, sync = True, waitForSettling = False)
17-03-17 21:23:17.868 -07 000000458 INF: Z Motor: Moving to -0.176933 mm, started at -0.170362 mm, distance = -6.57 um
17-03-17 21:23:17.868 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:17.878 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:17.878 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:17.878 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:23:17.888 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:23:17.888 -07 000000458 INF: FPGA: Xmit ZDACW 38651\n [Z Motor]
17-03-17 21:23:17.888 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:17.888 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:23:17.888 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:17.888 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:23:17.898 -07 000000458 INF: FPGA: 'ZDACW 38651' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:23:17.898 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:17.908 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:17.918 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:17.918 -07 000000501 INF: FPGA: Recv ZDACR 38651
17-03-17 21:23:17.928 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:17.928 -07 000000458 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:23:18.068 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:23:18.068 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:23:18.068 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:18.078 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:23:18.078 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:23:18.078 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:18.078 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:18.078 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:18.078 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:23:18.078 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:23:18.098 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:18.098 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:23:18.288 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:23:18.288 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-17 21:23:18.318 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:18.328 -07 000000438 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:23:18.328 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:23:18.328 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:18.328 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:23:18.328 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-17 21:23:19.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:19.278 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:23:19.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.288 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:19.308 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:19.308 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:19.308 -07 000000626 INF: Y Motor: Moved to 65.7139 after 1441 ms (table move)
17-03-17 21:23:19.318 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176933 mm (DAC = 38651)
17-03-17 21:23:19.318 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.318 -07 000000512 INF: FPGA: Recv ZSGSRD 36831
17-03-17 21:23:19.328 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:19.328 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.328 -07 000000569 INF: FPGA: Recv ZSGSRD 36835
17-03-17 21:23:19.338 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.338 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.338 -07 000000512 INF: FPGA: Recv ZSGSRD 36835
17-03-17 21:23:19.348 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.348 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.348 -07 000000608 INF: FPGA: Recv ZSGSRD 36835
17-03-17 21:23:19.358 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.358 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36834
17-03-17 21:23:19.368 -07 000000480 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.368 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.368 -07 000000431 INF: FPGA: Recv ZSGSRD 36832
17-03-17 21:23:19.378 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.378 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.378 -07 000000608 INF: FPGA: Recv ZSGSRD 36832
17-03-17 21:23:19.388 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.388 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.388 -07 000000569 INF: FPGA: Recv ZSGSRD 36829
17-03-17 21:23:19.398 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.398 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.398 -07 000000547 INF: FPGA: Recv ZSGSRD 36832
17-03-17 21:23:19.408 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.408 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:19.408 -07 000000012 INF: FPGA: Recv ZSGSRD 36837
17-03-17 21:23:19.418 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.418 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:19.418 -07 000000627 INF: FPGA: Recv ZPIEZORD 33260
17-03-17 21:23:19.428 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:19.428 -07 000000480 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -7.9 V.
17-03-17 21:23:19.428 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36833 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36833 (-176.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36829 (-176.0 uncal um), Max = 36837 (-176.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:23:19.428 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36833, posNoise = 4, negNoise = 4
17-03-17 21:23:19.428 -07 000000480 INF: Z Motor: After move to -0.176933, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:19.428 -07 000000480 INF: Z Motor: Settle wait time = 1444 ms, measure time = 109 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:23:19.428 -07 000000480 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:19.478 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:23:19.478 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:19.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:19.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:19.478 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:19.478 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:19.478 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:19.478 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:19.478 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:23:19.478 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:19.488 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:19.488 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:19.498 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:23:19.498 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:23:19.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:19.538 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:19.738 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:19.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:19.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:19.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:23:19.778 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:19.778 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:19.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:23:19.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:23:19.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:19.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:23:19.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:23:19.878 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:19.878 -07 000000627 INF: Autofocus start
17-03-17 21:23:19.878 -07 000000627 INF: MeasureProfile start
17-03-17 21:23:19.878 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:19.888 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:23:19.888 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:19.898 -07 000000627 INF: MeasureProfile done
17-03-17 21:23:19.898 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:23:19.898 -07 000000627 INF: Autofocus finished
17-03-17 21:23:20.088 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:20.088 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:20.088 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176946357828616. ----------
17-03-17 21:23:20.088 -07 000000610 INF: Cycle	50	Tile	8	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:20.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37148, sync = True, waitForSettling = True)
17-03-17 21:23:20.098 -07 000000610 INF: Z Motor: Moving to -0.170053 mm, started at -0.176946 mm, distance = 6.89 um
17-03-17 21:23:20.098 -07 000000610 INF: FPGA: Xmit ZDACW 37148\n [Z Motor]
17-03-17 21:23:20.098 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:23:20.108 -07 000000610 INF: FPGA: 'ZDACW 37148' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:23:20.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:20.108 -07 000000424 INF: FPGA: Recv ZDACR 37148
17-03-17 21:23:20.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.268 -07 000000608 INF: FPGA: Recv ZSGSRD 35764
17-03-17 21:23:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35763
17-03-17 21:23:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.288 -07 000000576 INF: FPGA: Recv ZSGSRD 35756
17-03-17 21:23:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.298 -07 000000415 INF: FPGA: Recv ZSGSRD 35764
17-03-17 21:23:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.308 -07 000000458 INF: FPGA: Recv ZSGSRD 35768
17-03-17 21:23:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35764
17-03-17 21:23:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.328 -07 000000429 INF: FPGA: Recv ZSGSRD 35762
17-03-17 21:23:20.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.338 -07 000000569 INF: FPGA: Recv ZSGSRD 35764
17-03-17 21:23:20.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.348 -07 000000415 INF: FPGA: Recv ZSGSRD 35760
17-03-17 21:23:20.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:20.358 -07 000000476 INF: FPGA: Recv ZSGSRD 35757
17-03-17 21:23:20.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:20.368 -07 000000431 INF: FPGA: Recv ZPIEZORD 31830
17-03-17 21:23:20.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:20.378 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -8.7 V.
17-03-17 21:23:20.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35762 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35764 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35756 (-169.2 uncal um), Max = 35768 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:23:20.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35762, posNoise = 6, negNoise = 6
17-03-17 21:23:20.378 -07 000000610 INF: Z Motor: After move to -0.170053, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:20.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:23:20.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:20.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:20.378 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:20.378 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:20.378 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:20.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:20.378 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:20.378 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:20.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:20.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:20.378 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:20.378 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:20.388 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:20.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:20.388 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:20.388 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:20.398 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:23:20.398 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:20.398 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:23:20.398 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:20.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37325 150\n [Camera]
17-03-17 21:23:20.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:20.748 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.993549,
17-03-17 21:23:21.028 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:21.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:21.028 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:21.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:21.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:23:21.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:21.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:21.028 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:21.028 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:21.028 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:23:21.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37325 816
17-03-17 21:23:21.368 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:21.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:23:21.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:23:21.428 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:21.428 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:21.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:23:21.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:23:21.428 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:23:21.428 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:21.438 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:21.438 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:23:21.578 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:21.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:21.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:21.578 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:21.578 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:23:21.578 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:21.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:21.578 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:21.578 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:21.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:23:21.768 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:21.768 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:21.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37325 150' command took 2 ms to send, 1367 ms to get response, and 1373 ms overall
17-03-17 21:23:21.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:21.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.17006602662479. ------
17-03-17 21:23:21.778 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17641 mm
17-03-17 21:23:21.778 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:21.778 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:21.888 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:21.888 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:21.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:21.888 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-17 21:23:21.888 -07 000000626 INF: Z Motor: Moving to -0.176411 mm, started at -0.170066 mm, distance = -6.35 um
17-03-17 21:23:21.888 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:23:21.888 -07 000000608 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 21:23:21.898 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 112 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:23:21.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:21.898 -07 000000569 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:23:21.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:21.908 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:21.908 -07 000000608 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:21.908 -07 000000608 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:21.908 -07 000000608 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:23:21.918 -07 000000626 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-17 21:23:21.918 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:23:21.928 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:21.928 -07 000000626 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:23:21.938 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:21.938 -07 000000475 INF: FPGA: Recv ZDACR 38537
17-03-17 21:23:21.948 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:23:21.948 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:23:21.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:23:21.968 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:23:21.968 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:21.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:21.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:23:21.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:23:21.968 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:21.978 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:23:21.978 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:23:21.978 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:23:22.108 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:22.108 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:23:22.298 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:23:22.298 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:22.338 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:22.338 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:23:22.348 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:23:22.348 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:22.348 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:23:22.348 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:23:23.298 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:23.298 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:23:23.308 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:23.308 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:23.328 -07 000000608 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:23.328 -07 000000608 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:23.328 -07 000000608 INF: Y Motor: Moved to 66.5386 after 1434 ms (table move)
17-03-17 21:23:23.328 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-17 21:23:23.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.338 -07 000000476 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:23:23.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:23:23.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36751
17-03-17 21:23:23.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:23.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36749
17-03-17 21:23:23.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36750
17-03-17 21:23:23.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.368 -07 000000459 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:23:23.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.378 -07 000000476 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:23:23.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.388 -07 000000458 INF: FPGA: Recv ZSGSRD 36751
17-03-17 21:23:23.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.398 -07 000000512 INF: FPGA: Recv ZSGSRD 36744
17-03-17 21:23:23.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.408 -07 000000569 INF: FPGA: Recv ZSGSRD 36749
17-03-17 21:23:23.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:23.418 -07 000000608 INF: FPGA: Recv ZSGSRD 36748
17-03-17 21:23:23.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.428 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:23.428 -07 000000501 INF: FPGA: Recv ZPIEZORD 33146
17-03-17 21:23:23.438 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:23.438 -07 000000012 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.0 V.
17-03-17 21:23:23.438 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36751 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36750 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36744 (-175.5 uncal um), Max = 36757 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:23:23.438 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36751, posNoise = 6, negNoise = 7
17-03-17 21:23:23.438 -07 000000012 INF: Z Motor: After move to -0.176411, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:23.438 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:23:23.438 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:23.488 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-17 21:23:23.488 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:23.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:23.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:23.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:23.488 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:23.488 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:23.488 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:23.488 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:23.488 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:23.498 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:23.498 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:23.508 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:23:23.508 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:23:23.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:23.548 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:23.748 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:23.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:23.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:23.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:23.788 -07 000000576 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:23:23.798 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:23.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 21:23:23.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:23:23.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:23.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:23.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:23:23.898 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:23.898 -07 000000458 INF: Autofocus start
17-03-17 21:23:23.898 -07 000000458 INF: MeasureProfile start
17-03-17 21:23:23.898 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:23.908 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:23.908 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:23.908 -07 000000458 INF: MeasureProfile done
17-03-17 21:23:23.908 -07 000000458 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:23:23.908 -07 000000458 INF: Autofocus finished
17-03-17 21:23:24.108 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:24.108 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:24.108 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176419572432992. ----------
17-03-17 21:23:24.118 -07 000000610 INF: Cycle	50	Tile	9	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:24.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37070, sync = True, waitForSettling = True)
17-03-17 21:23:24.118 -07 000000610 INF: Z Motor: Moving to -0.169696 mm, started at -0.176420 mm, distance = 6.72 um
17-03-17 21:23:24.118 -07 000000610 INF: FPGA: Xmit ZDACW 37070\n [Z Motor]
17-03-17 21:23:24.118 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:23:24.128 -07 000000610 INF: FPGA: 'ZDACW 37070' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:24.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:24.128 -07 000000424 INF: FPGA: Recv ZDACR 37070
17-03-17 21:23:24.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.288 -07 000000459 INF: FPGA: Recv ZSGSRD 35711
17-03-17 21:23:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35709
17-03-17 21:23:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.308 -07 000000576 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:23:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35704
17-03-17 21:23:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.328 -07 000000627 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:23:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.338 -07 000000415 INF: FPGA: Recv ZSGSRD 35707
17-03-17 21:23:24.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.348 -07 000000608 INF: FPGA: Recv ZSGSRD 35702
17-03-17 21:23:24.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.358 -07 000000626 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:23:24.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.368 -07 000000012 INF: FPGA: Recv ZSGSRD 35704
17-03-17 21:23:24.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:24.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:23:24.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:24.388 -07 000000438 INF: FPGA: Recv ZPIEZORD 31717
17-03-17 21:23:24.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:24.398 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -8.8 V.
17-03-17 21:23:24.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35705 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35704 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35702 (-168.8 uncal um), Max = 35711 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:23:24.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35705, posNoise = 6, negNoise = 3
17-03-17 21:23:24.398 -07 000000610 INF: Z Motor: After move to -0.169696, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:24.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:23:24.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:24.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:24.398 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:24.398 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:24.398 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:24.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:24.398 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:24.398 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:24.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:24.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:24.398 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:24.398 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:24.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:24.408 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:24.408 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:24.408 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:24.418 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:23:24.418 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:24.418 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:23:24.418 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:23:24.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37247 150\n [Camera]
17-03-17 21:23:24.618 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:25.048 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:25.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:25.048 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:25.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:25.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:25.048 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:25.058 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:25.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:25.058 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:25.058 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:23:25.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37247 816
17-03-17 21:23:25.398 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:25.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 21:23:25.428 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 21:23:25.428 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:25.428 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:25.428 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:23:25.428 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:23:25.428 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:25.438 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:25.438 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:23:25.438 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:23:25.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:25.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:25.598 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:25.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:25.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:25.598 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:25.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:25.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:23:25.608 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:25.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:23:25.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:25.798 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:25.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37247 150' command took 2 ms to send, 1373 ms to get response, and 1379 ms overall
17-03-17 21:23:25.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:25.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.16969984653271. ------
17-03-17 21:23:25.918 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17648 mm
17-03-17 21:23:25.918 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:25.918 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:25.918 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:23:25.918 -07 000000429 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:23:25.918 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38552, sync = True, waitForSettling = False)
17-03-17 21:23:25.918 -07 000000547 INF: Z Motor: Moving to -0.176480 mm, started at -0.169700 mm, distance = -6.78 um
17-03-17 21:23:25.918 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:25.928 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:23:25.928 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:25.928 -07 000000475 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:23:25.938 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:23:25.938 -07 000000429 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:25.938 -07 000000547 INF: FPGA: Xmit ZDACW 38552\n [Z Motor]
17-03-17 21:23:25.938 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:23:25.938 -07 000000429 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:25.938 -07 000000429 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:23:25.948 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:25.948 -07 000000547 INF: FPGA: 'ZDACW 38552' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:23:25.958 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:25.968 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:25.968 -07 000000626 INF: FPGA: Recv ZDACR 38552
17-03-17 21:23:25.978 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:25.978 -07 000000547 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:23:26.008 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:23:26.008 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:23:26.008 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:26.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:23:26.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:23:26.008 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:26.008 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:26.008 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:23:26.008 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:26.018 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:23:26.108 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.023489,
17-03-17 21:23:26.148 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:26.148 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 21:23:26.328 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:23:26.328 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:23:26.368 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:26.368 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:23:26.378 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:23:26.378 -07 000000429 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:26.378 -07 000000429 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:23:26.378 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 21:23:26.868 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:27.328 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:27.328 -07 000000382 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:23:27.338 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:27.338 -07 000000429 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:27.358 -07 000000429 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:27.358 -07 000000429 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:27.358 -07 000000429 INF: Y Motor: Moved to 67.3716 after 1439 ms (table move)
17-03-17 21:23:27.358 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176480 mm (DAC = 38552)
17-03-17 21:23:27.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36766
17-03-17 21:23:27.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:27.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.368 -07 000000501 INF: FPGA: Recv ZSGSRD 36761
17-03-17 21:23:27.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.378 -07 000000627 INF: FPGA: Recv ZSGSRD 36758
17-03-17 21:23:27.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.388 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.388 -07 000000476 INF: FPGA: Recv ZSGSRD 36752
17-03-17 21:23:27.398 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.398 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.398 -07 000000512 INF: FPGA: Recv ZSGSRD 36759
17-03-17 21:23:27.408 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.408 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.408 -07 000000480 INF: FPGA: Recv ZSGSRD 36764
17-03-17 21:23:27.418 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.418 -07 000000501 INF: FPGA: Recv ZSGSRD 36762
17-03-17 21:23:27.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.428 -07 000000569 INF: FPGA: Recv ZSGSRD 36751
17-03-17 21:23:27.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.438 -07 000000476 INF: FPGA: Recv ZSGSRD 36759
17-03-17 21:23:27.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:27.448 -07 000000012 INF: FPGA: Recv ZSGSRD 36761
17-03-17 21:23:27.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.458 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:27.458 -07 000000475 INF: FPGA: Recv ZPIEZORD 33166
17-03-17 21:23:27.468 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:27.468 -07 000000431 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.0 V.
17-03-17 21:23:27.468 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36759 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36760 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36751 (-175.5 uncal um), Max = 36766 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:23:27.468 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36759, posNoise = 7, negNoise = 8
17-03-17 21:23:27.468 -07 000000431 INF: Z Motor: After move to -0.176480, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:27.468 -07 000000431 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:23:27.468 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:27.518 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:23:27.518 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:27.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:27.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:27.518 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:27.518 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:27.528 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:27.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:27.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:27.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:27.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:23:27.528 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:27.538 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 21:23:27.538 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:23:27.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:27.588 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:23:27.788 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 21:23:27.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 21:23:27.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:27.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:27.828 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:27.828 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:27.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:23:27.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:23:27.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:27.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:27.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:23:27.928 -07 000000576 INF: Autofocus start
17-03-17 21:23:27.928 -07 000000576 INF: MeasureProfile start
17-03-17 21:23:27.928 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:27.928 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:27.938 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:27.938 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:27.938 -07 000000576 INF: MeasureProfile done
17-03-17 21:23:27.938 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:23:27.938 -07 000000576 INF: Autofocus finished
17-03-17 21:23:28.138 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:28.138 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:28.138 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176470966130126. ----------
17-03-17 21:23:28.138 -07 000000610 INF: Cycle	50	Tile	10	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:28.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37049, sync = True, waitForSettling = True)
17-03-17 21:23:28.148 -07 000000610 INF: Z Motor: Moving to -0.169599 mm, started at -0.176471 mm, distance = 6.87 um
17-03-17 21:23:28.148 -07 000000610 INF: FPGA: Xmit ZDACW 37049\n [Z Motor]
17-03-17 21:23:28.148 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:23:28.158 -07 000000610 INF: FPGA: 'ZDACW 37049' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:28.158 -07 000000382 INF: FPGA: Recv ZDACR 37049
17-03-17 21:23:28.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:28.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.318 -07 000000576 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:23:28.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.328 -07 000000626 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:23:28.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.338 -07 000000569 INF: FPGA: Recv ZSGSRD 35694
17-03-17 21:23:28.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.348 -07 000000480 INF: FPGA: Recv ZSGSRD 35698
17-03-17 21:23:28.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.358 -07 000000501 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:23:28.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.368 -07 000000459 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:23:28.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35691
17-03-17 21:23:28.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.388 -07 000000547 INF: FPGA: Recv ZSGSRD 35694
17-03-17 21:23:28.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.398 -07 000000431 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:23:28.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:28.408 -07 000000458 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:23:28.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:28.418 -07 000000415 INF: FPGA: Recv ZPIEZORD 31719
17-03-17 21:23:28.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:28.428 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -8.8 V.
17-03-17 21:23:28.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35691 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35690 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35689 (-168.7 uncal um), Max = 35698 (-168.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:23:28.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35691, posNoise = 7, negNoise = 2
17-03-17 21:23:28.428 -07 000000610 INF: Z Motor: After move to -0.169599, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:28.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:23:28.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:28.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:28.428 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:28.428 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:28.428 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:28.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:28.428 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:28.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:28.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:28.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:28.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:23:28.428 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:28.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:28.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:28.438 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:23:28.438 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:28.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:28.438 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:28.438 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:23:28.438 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:28.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37226 150\n [Camera]
17-03-17 21:23:28.648 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:29.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:29.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:29.078 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:29.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:29.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:29.078 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:29.078 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:29.078 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:29.088 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:29.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:23:29.268 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37226 816
17-03-17 21:23:29.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:29.468 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:23:29.468 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:23:29.468 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:29.478 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:29.478 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:23:29.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:23:29.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:23:29.478 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:29.478 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:29.488 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:23:29.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:29.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:29.628 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:29.628 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:29.628 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:23:29.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:29.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:29.628 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:29.628 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:29.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:23:29.818 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:29.818 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:29.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37226 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:23:29.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:29.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169609907562725. ------
17-03-17 21:23:29.828 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:29.828 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17600 mm
17-03-17 21:23:29.828 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:29.828 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:23:29.828 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:23:29.828 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:29.828 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38447, sync = True, waitForSettling = False)
17-03-17 21:23:29.828 -07 000000547 INF: Z Motor: Moving to -0.175999 mm, started at -0.169610 mm, distance = -6.39 um
17-03-17 21:23:29.838 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:23:29.838 -07 000000547 INF: FPGA: Xmit ZDACW 38447\n [Z Motor]
17-03-17 21:23:29.838 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:23:29.848 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:29.848 -07 000000547 INF: FPGA: 'ZDACW 38447' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:23:29.848 -07 000000476 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:23:29.858 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:23:29.858 -07 000000608 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:29.858 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:29.858 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:29.858 -07 000000608 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:23:29.868 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:29.868 -07 000000476 INF: FPGA: Recv ZDACR 38447
17-03-17 21:23:29.878 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:29.878 -07 000000547 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:23:29.878 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:30.028 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:23:30.028 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:23:30.028 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:30.038 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:23:30.038 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:23:30.038 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:30.038 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:30.038 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:23:30.038 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:30.048 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:23:30.058 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:30.058 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:23:30.248 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:23:30.248 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:23:30.288 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:30.298 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:23:30.298 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:23:30.298 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:30.298 -07 000000608 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:23:30.298 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.841 mm, average velocity = 2.129 mm/sec
17-03-17 21:23:31.248 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:31.248 -07 000000458 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:23:31.258 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:31.258 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:31.278 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:31.278 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:31.278 -07 000000608 INF: Y Motor: Moved to 68.2046 after 1447 ms (table move)
17-03-17 21:23:31.278 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175999 mm (DAC = 38447)
17-03-17 21:23:31.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36684
17-03-17 21:23:31.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:23:31.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36682
17-03-17 21:23:31.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:31.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.298 -07 000000480 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:23:31.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.308 -07 000000476 INF: FPGA: Recv ZSGSRD 36687
17-03-17 21:23:31.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36690
17-03-17 21:23:31.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.328 -07 000000475 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:23:31.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36680
17-03-17 21:23:31.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.348 -07 000000480 INF: FPGA: Recv ZSGSRD 36682
17-03-17 21:23:31.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.358 -07 000000476 INF: FPGA: Recv ZSGSRD 36681
17-03-17 21:23:31.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:31.368 -07 000000547 INF: FPGA: Recv ZSGSRD 36693
17-03-17 21:23:31.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.378 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:31.378 -07 000000475 INF: FPGA: Recv ZPIEZORD 33032
17-03-17 21:23:31.388 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:31.388 -07 000000627 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.1 V.
17-03-17 21:23:31.388 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36686 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36680 (-175.1 uncal um), Max = 36693 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:23:31.388 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36686, posNoise = 7, negNoise = 6
17-03-17 21:23:31.388 -07 000000627 INF: Z Motor: After move to -0.175999, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:31.388 -07 000000627 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:23:31.388 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:31.438 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 21:23:31.438 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:31.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:31.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:31.438 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:31.438 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:31.438 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:31.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:31.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:31.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:31.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:31.448 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:31.458 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:23:31.458 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:23:31.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:31.478 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.994908,
17-03-17 21:23:31.508 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:31.698 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:31.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:31.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:31.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:23:31.738 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:31.748 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:31.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:23:31.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:23:31.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:31.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:23:31.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:23:31.848 -07 000000480 INF: Autofocus start
17-03-17 21:23:31.848 -07 000000480 INF: MeasureProfile start
17-03-17 21:23:31.848 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:31.848 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:31.858 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:23:31.858 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:31.858 -07 000000480 INF: MeasureProfile done
17-03-17 21:23:31.858 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:31.858 -07 000000480 INF: Autofocus finished
17-03-17 21:23:31.868 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:31.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:32.058 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:32.058 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:32.058 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.176001998643777. ----------
17-03-17 21:23:32.058 -07 000000610 INF: Cycle	50	Tile	11	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:32.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36962, sync = True, waitForSettling = True)
17-03-17 21:23:32.068 -07 000000610 INF: Z Motor: Moving to -0.169201 mm, started at -0.176002 mm, distance = 6.80 um
17-03-17 21:23:32.068 -07 000000610 INF: FPGA: Xmit ZDACW 36962\n [Z Motor]
17-03-17 21:23:32.068 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:23:32.078 -07 000000610 INF: FPGA: 'ZDACW 36962' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:32.078 -07 000000501 INF: FPGA: Recv ZDACR 36962
17-03-17 21:23:32.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:32.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.238 -07 000000438 INF: FPGA: Recv ZSGSRD 35624
17-03-17 21:23:32.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:32.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.248 -07 000000480 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:23:32.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.258 -07 000000475 INF: FPGA: Recv ZSGSRD 35636
17-03-17 21:23:32.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.268 -07 000000626 INF: FPGA: Recv ZSGSRD 35624
17-03-17 21:23:32.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:23:32.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.288 -07 000000476 INF: FPGA: Recv ZSGSRD 35625
17-03-17 21:23:32.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.298 -07 000000429 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:23:32.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.308 -07 000000458 INF: FPGA: Recv ZSGSRD 35630
17-03-17 21:23:32.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.318 -07 000000012 INF: FPGA: Recv ZSGSRD 35628
17-03-17 21:23:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:32.328 -07 000000576 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:23:32.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:32.338 -07 000000012 INF: FPGA: Recv ZPIEZORD 31668
17-03-17 21:23:32.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:32.348 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.7 V.
17-03-17 21:23:32.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35627 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35626 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35624 (-168.3 uncal um), Max = 35636 (-168.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:23:32.348 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35627, posNoise = 9, negNoise = 3
17-03-17 21:23:32.348 -07 000000610 INF: Z Motor: After move to -0.169201, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:32.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:32.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:32.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:32.348 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:32.348 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:32.348 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:32.348 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:32.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:32.348 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:32.348 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:32.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:23:32.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:32.348 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:32.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:32.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:32.358 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 6 ms.
17-03-17 21:23:32.358 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:32.368 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:32.368 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:23:32.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:23:32.368 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:23:32.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37139 150\n [Camera]
17-03-17 21:23:32.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:32.998 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:32.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:32.998 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:32.998 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:32.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:23:32.998 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:32.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:32.998 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:32.998 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:33.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:23:33.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37139 816
17-03-17 21:23:33.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:33.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:23:33.378 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:23:33.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:33.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:23:33.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:23:33.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:33.388 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:33.388 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:23:33.388 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:33.398 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:23:33.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:33.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:33.548 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:33.548 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:33.548 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:23:33.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:33.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:33.548 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:33.548 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:33.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:23:33.738 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:33.738 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:33.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37139 150' command took 2 ms to send, 1367 ms to get response, and 1373 ms overall
17-03-17 21:23:33.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:33.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169198757985653. ------
17-03-17 21:23:33.748 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17578 mm
17-03-17 21:23:33.748 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:33.748 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:33.748 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38400, sync = True, waitForSettling = False)
17-03-17 21:23:33.748 -07 000000459 INF: Z Motor: Moving to -0.175784 mm, started at -0.169199 mm, distance = -6.59 um
17-03-17 21:23:33.748 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:23:33.748 -07 000000429 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:23:33.748 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:33.758 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:33.758 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:33.758 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:23:33.768 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:23:33.768 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:33.768 -07 000000459 INF: FPGA: Xmit ZDACW 38400\n [Z Motor]
17-03-17 21:23:33.768 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:23:33.768 -07 000000429 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:33.768 -07 000000429 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:23:33.778 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:33.778 -07 000000459 INF: FPGA: 'ZDACW 38400' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:23:33.788 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:33.798 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:33.798 -07 000000431 INF: FPGA: Recv ZDACR 38400
17-03-17 21:23:33.808 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:33.808 -07 000000459 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:23:33.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:23:33.938 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:23:33.938 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:33.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:23:33.938 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:23:33.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:33.948 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:33.948 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:23:33.948 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:23:33.948 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:23:33.978 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:33.978 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:23:34.168 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:23:34.168 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-17 21:23:34.198 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:34.208 -07 000000480 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:23:34.208 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:23:34.208 -07 000000429 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:34.208 -07 000000429 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:23:34.208 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 21:23:35.158 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:35.158 -07 000000415 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:23:35.168 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:35.168 -07 000000429 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:35.188 -07 000000429 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:35.188 -07 000000429 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:23:35.188 -07 000000429 INF: Y Motor: Moved to 69.0269 after 1437 ms (table move)
17-03-17 21:23:35.188 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175784 mm (DAC = 38400)
17-03-17 21:23:35.188 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.198 -07 000000475 INF: FPGA: Recv ZSGSRD 36650
17-03-17 21:23:35.198 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 7 ms overall
17-03-17 21:23:35.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.198 -07 000000480 INF: FPGA: Recv ZSGSRD 36653
17-03-17 21:23:35.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:23:35.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36648
17-03-17 21:23:35.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36656
17-03-17 21:23:35.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.228 -07 000000608 INF: FPGA: Recv ZSGSRD 36645
17-03-17 21:23:35.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36658
17-03-17 21:23:35.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.248 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36659
17-03-17 21:23:35.258 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.258 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36654
17-03-17 21:23:35.268 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:35.268 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.268 -07 000000459 INF: FPGA: Recv ZSGSRD 36658
17-03-17 21:23:35.278 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:35.278 -07 000000415 INF: FPGA: Recv ZSGSRD 36646
17-03-17 21:23:35.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.288 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:35.288 -07 000000438 INF: FPGA: Recv ZPIEZORD 33037
17-03-17 21:23:35.298 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.298 -07 000000476 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.0 V.
17-03-17 21:23:35.298 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36653 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36654 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36645 (-174.9 uncal um), Max = 36659 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:23:35.298 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36653, posNoise = 6, negNoise = 8
17-03-17 21:23:35.298 -07 000000476 INF: Z Motor: After move to -0.175784, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:35.298 -07 000000476 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:23:35.298 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:35.348 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:23:35.348 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:35.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:35.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:35.348 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:35.348 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:35.348 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:35.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:35.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:35.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:35.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:35.358 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:35.358 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:23:35.358 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:23:35.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:35.408 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:35.608 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:35.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:35.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:35.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:35.648 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:35.648 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:35.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 21:23:35.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:23:35.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:35.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:35.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:23:35.748 -07 000000415 INF: Autofocus start
17-03-17 21:23:35.748 -07 000000415 INF: MeasureProfile start
17-03-17 21:23:35.748 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:35.748 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:35.758 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:35.758 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:35.758 -07 000000415 INF: MeasureProfile done
17-03-17 21:23:35.758 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:35.758 -07 000000415 INF: Autofocus finished
17-03-17 21:23:35.958 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:35.958 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:35.958 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175789999643099. ----------
17-03-17 21:23:35.958 -07 000000610 INF: Cycle	50	Tile	12	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:35.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36914, sync = True, waitForSettling = True)
17-03-17 21:23:35.968 -07 000000610 INF: Z Motor: Moving to -0.168981 mm, started at -0.175790 mm, distance = 6.81 um
17-03-17 21:23:35.968 -07 000000610 INF: FPGA: Xmit ZDACW 36914\n [Z Motor]
17-03-17 21:23:35.968 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:23:35.978 -07 000000610 INF: FPGA: 'ZDACW 36914' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:23:35.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:35.978 -07 000000431 INF: FPGA: Recv ZDACR 36914
17-03-17 21:23:35.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:35.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35595
17-03-17 21:23:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.148 -07 000000429 INF: FPGA: Recv ZSGSRD 35596
17-03-17 21:23:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.158 -07 000000501 INF: FPGA: Recv ZSGSRD 35593
17-03-17 21:23:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.168 -07 000000012 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:23:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.178 -07 000000608 INF: FPGA: Recv ZSGSRD 35599
17-03-17 21:23:36.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:23:36.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35596
17-03-17 21:23:36.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.198 -07 000000569 INF: FPGA: Recv ZSGSRD 35595
17-03-17 21:23:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.208 -07 000000429 INF: FPGA: Recv ZSGSRD 35598
17-03-17 21:23:36.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35593
17-03-17 21:23:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:36.228 -07 000000627 INF: FPGA: Recv ZSGSRD 35593
17-03-17 21:23:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:36.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 31615
17-03-17 21:23:36.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:36.248 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -8.8 V.
17-03-17 21:23:36.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35595 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35595 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35589 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:23:36.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35595, posNoise = 4, negNoise = 6
17-03-17 21:23:36.248 -07 000000610 INF: Z Motor: After move to -0.168981, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:36.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:23:36.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:36.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:36.248 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:36.248 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:36.248 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:36.248 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:36.248 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:36.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:36.248 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:36.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:36.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:36.248 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:36.258 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:36.258 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:36.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:36.258 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:36.268 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:23:36.268 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:23:36.268 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:23:36.268 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:23:36.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 37091 150\n [Camera]
17-03-17 21:23:36.468 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:36.848 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.988112,
17-03-17 21:23:36.868 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:36.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:36.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:36.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:36.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:36.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:36.908 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:36.908 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:36.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:36.918 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:36.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:23:37.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37091 818
17-03-17 21:23:37.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:37.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:23:37.288 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:23:37.288 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:37.288 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:37.288 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:23:37.288 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:23:37.288 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:37.298 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:37.298 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:23:37.298 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:23:37.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:37.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:37.458 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:37.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:37.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:37.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:37.458 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:37.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:23:37.468 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:37.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:23:37.648 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:23:37.648 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:37.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 37091 150' command took 2 ms to send, 1362 ms to get response, and 1373 ms overall
17-03-17 21:23:37.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:37.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168993183197116. ------
17-03-17 21:23:37.648 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:37.648 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17538 mm
17-03-17 21:23:37.648 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:37.658 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:23:37.658 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:23:37.658 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38311, sync = True, waitForSettling = False)
17-03-17 21:23:37.658 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:37.658 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:23:37.658 -07 000000569 INF: Z Motor: Moving to -0.175377 mm, started at -0.168993 mm, distance = -6.38 um
17-03-17 21:23:37.658 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:37.658 -07 000000382 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:23:37.668 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:37.668 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:37.668 -07 000000626 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:37.668 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:37.668 -07 000000626 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:23:37.678 -07 000000569 INF: FPGA: Xmit ZDACW 38311\n [Z Motor]
17-03-17 21:23:37.678 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:23:37.688 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:37.688 -07 000000569 INF: FPGA: 'ZDACW 38311' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:23:37.798 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:37.798 -07 000000431 INF: FPGA: Recv ZDACR 38311
17-03-17 21:23:37.808 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:23:37.808 -07 000000569 INF: Z Motor: MoveAbsStepped took 148 ms (did NOT wait for settling yet))
17-03-17 21:23:37.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:23:37.858 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:23:37.858 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:37.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:23:37.858 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:23:37.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:37.868 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:37.868 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 21:23:37.868 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:37.868 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:23:37.868 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:37.878 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:23:38.058 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:23:38.058 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 262 ms to get response, and 397 ms overall
17-03-17 21:23:38.098 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:38.108 -07 000000012 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:23:38.108 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:23:38.108 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:38.108 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:23:38.108 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-17 21:23:39.058 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:39.058 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:23:39.068 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:39.068 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:39.088 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:39.088 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:39.088 -07 000000626 INF: Y Motor: Moved to 69.8628 after 1433 ms (table move)
17-03-17 21:23:39.088 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175377 mm (DAC = 38311)
17-03-17 21:23:39.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.098 -07 000000501 INF: FPGA: Recv ZSGSRD 36587
17-03-17 21:23:39.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:39.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36591
17-03-17 21:23:39.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.108 -07 000000429 INF: FPGA: Recv ZSGSRD 36589
17-03-17 21:23:39.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.118 -07 000000458 INF: FPGA: Recv ZSGSRD 36593
17-03-17 21:23:39.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.128 -07 000000480 INF: FPGA: Recv ZSGSRD 36598
17-03-17 21:23:39.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.138 -07 000000627 INF: FPGA: Recv ZSGSRD 36590
17-03-17 21:23:39.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.148 -07 000000475 INF: FPGA: Recv ZSGSRD 36582
17-03-17 21:23:39.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.158 -07 000000547 INF: FPGA: Recv ZSGSRD 36590
17-03-17 21:23:39.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.168 -07 000000458 INF: FPGA: Recv ZSGSRD 36590
17-03-17 21:23:39.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:39.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36588
17-03-17 21:23:39.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.188 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:39.188 -07 000000382 INF: FPGA: Recv ZPIEZORD 32938
17-03-17 21:23:39.198 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.198 -07 000000438 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.1 V.
17-03-17 21:23:39.198 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36590 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36590 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36582 (-174.4 uncal um), Max = 36598 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:23:39.198 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36590, posNoise = 8, negNoise = 8
17-03-17 21:23:39.198 -07 000000438 INF: Z Motor: After move to -0.175377, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:39.198 -07 000000438 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:23:39.198 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:39.248 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:23:39.248 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:39.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:39.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:39.248 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:39.248 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:39.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:39.258 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:39.258 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:39.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:39.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:39.258 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:39.268 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:23:39.268 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:23:39.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:39.318 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:39.518 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:39.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:39.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:39.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:39.558 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:39.558 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:39.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 21:23:39.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:23:39.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:39.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:39.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:23:39.658 -07 000000608 INF: Autofocus start
17-03-17 21:23:39.658 -07 000000608 INF: MeasureProfile start
17-03-17 21:23:39.658 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:39.658 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:39.668 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:39.668 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:39.668 -07 000000608 INF: MeasureProfile done
17-03-17 21:23:39.668 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:23:39.668 -07 000000608 INF: Autofocus finished
17-03-17 21:23:39.868 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:39.868 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:39.868 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175385274278168. ----------
17-03-17 21:23:39.868 -07 000000610 INF: Cycle	50	Tile	13	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:39.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36808, sync = True, waitForSettling = True)
17-03-17 21:23:39.878 -07 000000610 INF: Z Motor: Moving to -0.168496 mm, started at -0.175385 mm, distance = 6.89 um
17-03-17 21:23:39.878 -07 000000610 INF: FPGA: Xmit ZDACW 36808\n [Z Motor]
17-03-17 21:23:39.878 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:23:39.888 -07 000000610 INF: FPGA: 'ZDACW 36808' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:39.888 -07 000000415 INF: FPGA: Recv ZDACR 36808
17-03-17 21:23:39.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:39.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35516
17-03-17 21:23:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.058 -07 000000475 INF: FPGA: Recv ZSGSRD 35519
17-03-17 21:23:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35517
17-03-17 21:23:40.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:40.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35511
17-03-17 21:23:40.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35522
17-03-17 21:23:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.098 -07 000000547 INF: FPGA: Recv ZSGSRD 35514
17-03-17 21:23:40.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35517
17-03-17 21:23:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.118 -07 000000576 INF: FPGA: Recv ZSGSRD 35518
17-03-17 21:23:40.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35512
17-03-17 21:23:40.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:40.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35525
17-03-17 21:23:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:40.148 -07 000000627 INF: FPGA: Recv ZPIEZORD 31550
17-03-17 21:23:40.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:40.158 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -8.8 V.
17-03-17 21:23:40.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35517 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35517 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35511 (-167.6 uncal um), Max = 35525 (-167.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:23:40.158 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35517, posNoise = 8, negNoise = 6
17-03-17 21:23:40.158 -07 000000610 INF: Z Motor: After move to -0.168496, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:40.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:40.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:40.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:40.158 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:40.158 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:40.158 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:40.158 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:40.158 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:40.158 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:40.158 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:40.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:40.158 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:40.158 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:40.168 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:40.168 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:40.168 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:40.168 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:40.168 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:23:40.168 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:40.178 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:23:40.178 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:23:40.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36985 150\n [Camera]
17-03-17 21:23:40.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:40.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:40.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:40.808 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:40.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:40.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:40.808 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:40.818 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:40.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:40.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:40.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:23:40.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36985 816
17-03-17 21:23:41.148 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:41.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:23:41.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 21:23:41.188 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:41.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:23:41.188 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:23:41.188 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:41.188 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:41.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:41.198 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:23:41.198 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:23:41.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:41.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:41.358 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:41.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:41.358 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:41.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:41.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:23:41.358 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:41.358 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:41.358 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:23:41.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:41.548 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:41.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36985 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:23:41.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:41.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168492094650059. ------
17-03-17 21:23:41.558 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17491 mm
17-03-17 21:23:41.558 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:41.558 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:41.558 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:23:41.558 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:23:41.558 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38210, sync = True, waitForSettling = False)
17-03-17 21:23:41.558 -07 000000626 INF: Z Motor: Moving to -0.174914 mm, started at -0.168492 mm, distance = -6.42 um
17-03-17 21:23:41.558 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:41.568 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:23:41.568 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:41.568 -07 000000476 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:23:41.578 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:23:41.578 -07 000000626 INF: FPGA: Xmit ZDACW 38210\n [Z Motor]
17-03-17 21:23:41.578 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:41.578 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:41.578 -07 000000424 INF: Y Motor: Moving 1344 steps-20
17-03-17 21:23:41.578 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:23:41.588 -07 000000626 INF: FPGA: 'ZDACW 38210' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:23:41.588 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:41.598 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:41.608 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:41.608 -07 000000382 INF: FPGA: Recv ZDACR 38210
17-03-17 21:23:41.618 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:41.618 -07 000000626 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:23:41.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:23:41.748 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:23:41.748 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:41.748 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:41.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:23:41.748 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:23:41.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:41.758 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:41.758 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:23:41.758 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:23:41.788 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:41.788 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:23:41.868 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:41.968 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:23:41.978 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 21:23:42.008 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:42.018 -07 000000431 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:23:42.018 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:23:42.018 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:42.018 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:23:42.018 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-17 21:23:42.218 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.969015,
17-03-17 21:23:42.968 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:42.968 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:23:42.978 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:42.978 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:42.998 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:42.998 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:42.998 -07 000000424 INF: Y Motor: Moved to 70.6880 after 1439 ms (table move)
17-03-17 21:23:42.998 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174914 mm (DAC = 38210)
17-03-17 21:23:42.998 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36517
17-03-17 21:23:43.008 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:43.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.008 -07 000000475 INF: FPGA: Recv ZSGSRD 36527
17-03-17 21:23:43.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.018 -07 000000429 INF: FPGA: Recv ZSGSRD 36514
17-03-17 21:23:43.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.028 -07 000000438 INF: FPGA: Recv ZSGSRD 36518
17-03-17 21:23:43.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36514
17-03-17 21:23:43.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.048 -07 000000547 INF: FPGA: Recv ZSGSRD 36517
17-03-17 21:23:43.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.058 -07 000000475 INF: FPGA: Recv ZSGSRD 36518
17-03-17 21:23:43.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.068 -07 000000429 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:23:43.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.078 -07 000000438 INF: FPGA: Recv ZSGSRD 36521
17-03-17 21:23:43.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.088 -07 000000382 INF: FPGA: Recv ZSGSRD 36519
17-03-17 21:23:43.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.098 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:43.098 -07 000000424 INF: FPGA: Recv ZPIEZORD 32847
17-03-17 21:23:43.108 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.108 -07 000000012 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.830 V. Piezo Error = -8.1 V.
17-03-17 21:23:43.108 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36518 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36518 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36511 (-174.0 uncal um), Max = 36527 (-174.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:23:43.108 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36518, posNoise = 9, negNoise = 7
17-03-17 21:23:43.108 -07 000000012 INF: Z Motor: After move to -0.174914, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:43.108 -07 000000012 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:23:43.108 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:43.158 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:23:43.158 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:43.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:43.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:43.158 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:43.158 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:43.158 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:43.158 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:43.158 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:43.158 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:43.168 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:43.168 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:43.178 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:23:43.178 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:23:43.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:43.228 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:43.428 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:43.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:43.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:43.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:23:43.468 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:43.468 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:43.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 21:23:43.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:23:43.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:43.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:43.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:23:43.568 -07 000000501 INF: Autofocus start
17-03-17 21:23:43.568 -07 000000501 INF: MeasureProfile start
17-03-17 21:23:43.568 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:43.568 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:43.578 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:43.578 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:43.578 -07 000000501 INF: MeasureProfile done
17-03-17 21:23:43.578 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:23:43.578 -07 000000501 INF: Autofocus finished
17-03-17 21:23:43.778 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:43.778 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:43.778 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174922731003962. ----------
17-03-17 21:23:43.778 -07 000000610 INF: Cycle	50	Tile	14	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:43.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36742, sync = True, waitForSettling = True)
17-03-17 21:23:43.788 -07 000000610 INF: Z Motor: Moving to -0.168194 mm, started at -0.174923 mm, distance = 6.73 um
17-03-17 21:23:43.788 -07 000000610 INF: FPGA: Xmit ZDACW 36742\n [Z Motor]
17-03-17 21:23:43.788 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:23:43.798 -07 000000610 INF: FPGA: 'ZDACW 36742' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:43.798 -07 000000415 INF: FPGA: Recv ZDACR 36742
17-03-17 21:23:43.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.958 -07 000000608 INF: FPGA: Recv ZSGSRD 35470
17-03-17 21:23:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35471
17-03-17 21:23:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.978 -07 000000475 INF: FPGA: Recv ZSGSRD 35474
17-03-17 21:23:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.988 -07 000000458 INF: FPGA: Recv ZSGSRD 35470
17-03-17 21:23:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:43.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:43.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35470
17-03-17 21:23:44.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:44.008 -07 000000608 INF: FPGA: Recv ZSGSRD 35475
17-03-17 21:23:44.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:44.018 -07 000000547 INF: FPGA: Recv ZSGSRD 35473
17-03-17 21:23:44.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:44.028 -07 000000627 INF: FPGA: Recv ZSGSRD 35475
17-03-17 21:23:44.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:44.038 -07 000000576 INF: FPGA: Recv ZSGSRD 35468
17-03-17 21:23:44.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:44.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35471
17-03-17 21:23:44.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:44.058 -07 000000415 INF: FPGA: Recv ZPIEZORD 31489
17-03-17 21:23:44.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:44.068 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -8.8 V.
17-03-17 21:23:44.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35472 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35471 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35468 (-167.3 uncal um), Max = 35475 (-167.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:23:44.068 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35472, posNoise = 3, negNoise = 4
17-03-17 21:23:44.068 -07 000000610 INF: Z Motor: After move to -0.168194, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:44.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:23:44.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:44.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:44.068 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:44.068 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:44.068 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:44.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:44.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:44.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:44.068 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:44.068 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:44.068 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:44.068 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:44.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:44.068 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:44.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:23:44.078 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:44.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:44.078 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:23:44.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:23:44.088 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:23:44.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36919 150\n [Camera]
17-03-17 21:23:44.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:44.718 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:44.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:44.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:44.718 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:44.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 21:23:44.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:44.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:44.728 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:44.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:44.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:23:44.908 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36919 816
17-03-17 21:23:45.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:45.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:23:45.098 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:23:45.098 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:23:45.098 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:23:45.098 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:45.098 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:45.108 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:45.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:23:45.108 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:45.108 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:23:45.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:45.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:45.268 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:45.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:45.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:23:45.268 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:45.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:45.278 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:45.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:45.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:23:45.458 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:45.458 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:45.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36919 150' command took 2 ms to send, 1368 ms to get response, and 1372 ms overall
17-03-17 21:23:45.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:45.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.16820300510368. ------
17-03-17 21:23:45.468 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:45.468 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17453 mm
17-03-17 21:23:45.468 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:45.468 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:23:45.468 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:23:45.468 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38126, sync = True, waitForSettling = False)
17-03-17 21:23:45.468 -07 000000429 INF: Z Motor: Moving to -0.174530 mm, started at -0.168203 mm, distance = -6.33 um
17-03-17 21:23:45.468 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:45.478 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:23:45.478 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:45.478 -07 000000458 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:23:45.488 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:23:45.488 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:45.488 -07 000000429 INF: FPGA: Xmit ZDACW 38126\n [Z Motor]
17-03-17 21:23:45.488 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:23:45.608 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:45.608 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:45.608 -07 000000626 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:23:45.608 -07 000000429 INF: FPGA: 'ZDACW 38126' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 21:23:45.618 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:45.618 -07 000000438 INF: FPGA: Recv ZDACR 38126
17-03-17 21:23:45.628 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:23:45.628 -07 000000429 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-17 21:23:45.628 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:45.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:23:45.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:23:45.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:23:45.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:45.668 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:23:45.668 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:45.668 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:45.678 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:23:45.678 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:23:45.678 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:23:45.808 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:45.808 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 334 ms overall
17-03-17 21:23:45.998 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:23:45.998 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:23:46.038 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:46.038 -07 000000438 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:23:46.048 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:23:46.048 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:46.048 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:23:46.048 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-17 21:23:46.868 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:46.998 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:46.998 -07 000000415 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:23:47.008 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:47.008 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:47.028 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:47.028 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:47.028 -07 000000626 INF: Y Motor: Moved to 71.5186 after 1558 ms (table move)
17-03-17 21:23:47.028 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174530 mm (DAC = 38126)
17-03-17 21:23:47.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.038 -07 000000627 INF: FPGA: Recv ZSGSRD 36465
17-03-17 21:23:47.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:23:47.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36459
17-03-17 21:23:47.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:47.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.048 -07 000000475 INF: FPGA: Recv ZSGSRD 36460
17-03-17 21:23:47.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.058 -07 000000438 INF: FPGA: Recv ZSGSRD 36461
17-03-17 21:23:47.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.068 -07 000000547 INF: FPGA: Recv ZSGSRD 36459
17-03-17 21:23:47.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.078 -07 000000012 INF: FPGA: Recv ZSGSRD 36454
17-03-17 21:23:47.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.088 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.088 -07 000000512 INF: FPGA: Recv ZSGSRD 36462
17-03-17 21:23:47.098 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36457
17-03-17 21:23:47.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.108 -07 000000438 INF: FPGA: Recv ZSGSRD 36455
17-03-17 21:23:47.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:47.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36457
17-03-17 21:23:47.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.128 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:47.128 -07 000000458 INF: FPGA: Recv ZPIEZORD 32786
17-03-17 21:23:47.138 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.138 -07 000000569 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.1 V.
17-03-17 21:23:47.138 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36459 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36459 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36454 (-173.6 uncal um), Max = 36465 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:23:47.138 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36459, posNoise = 6, negNoise = 5
17-03-17 21:23:47.138 -07 000000569 INF: Z Motor: After move to -0.174530, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:47.138 -07 000000569 INF: Z Motor: Settle wait time = 1561 ms, measure time = 103 ms (allowed 150 ms), total time = 1664 ms
17-03-17 21:23:47.138 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:47.188 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 21:23:47.188 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:47.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:47.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:47.188 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:47.188 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:47.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:47.188 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:47.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:47.188 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:47.198 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:47.198 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:47.208 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:23:47.208 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:23:47.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:47.258 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:47.458 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:47.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:47.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:47.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:47.498 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:47.498 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:47.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:23:47.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 21:23:47.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:47.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:47.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:23:47.588 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.96762,
17-03-17 21:23:47.598 -07 000000012 INF: Autofocus start
17-03-17 21:23:47.598 -07 000000012 INF: MeasureProfile start
17-03-17 21:23:47.608 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:47.608 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:47.608 -07 000000012 INF: MeasureProfile done
17-03-17 21:23:47.608 -07 000000012 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:23:47.608 -07 000000012 INF: Autofocus finished
17-03-17 21:23:47.618 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:23:47.628 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:47.828 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:47.828 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:23:47.828 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174543702487598. ----------
17-03-17 21:23:47.828 -07 000000610 INF: Cycle	50	Tile	15	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:47.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36606, sync = True, waitForSettling = True)
17-03-17 21:23:47.828 -07 000000610 INF: Z Motor: Moving to -0.167572 mm, started at -0.174544 mm, distance = 6.97 um
17-03-17 21:23:47.828 -07 000000610 INF: FPGA: Xmit ZDACW 36606\n [Z Motor]
17-03-17 21:23:47.838 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:23:47.848 -07 000000610 INF: FPGA: 'ZDACW 36606' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:47.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:47.848 -07 000000459 INF: FPGA: Recv ZDACR 36606
17-03-17 21:23:47.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:47.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:48.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.008 -07 000000576 INF: FPGA: Recv ZSGSRD 35375
17-03-17 21:23:48.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:48.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.018 -07 000000608 INF: FPGA: Recv ZSGSRD 35380
17-03-17 21:23:48.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35371
17-03-17 21:23:48.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35371
17-03-17 21:23:48.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35373
17-03-17 21:23:48.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.058 -07 000000512 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:23:48.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.068 -07 000000547 INF: FPGA: Recv ZSGSRD 35371
17-03-17 21:23:48.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.078 -07 000000627 INF: FPGA: Recv ZSGSRD 35372
17-03-17 21:23:48.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.088 -07 000000480 INF: FPGA: Recv ZSGSRD 35379
17-03-17 21:23:48.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:48.098 -07 000000501 INF: FPGA: Recv ZSGSRD 35374
17-03-17 21:23:48.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:48.108 -07 000000626 INF: FPGA: Recv ZPIEZORD 31359
17-03-17 21:23:48.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:48.118 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -8.9 V.
17-03-17 21:23:48.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35375 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35374 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35371 (-166.7 uncal um), Max = 35382 (-166.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:23:48.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35375, posNoise = 7, negNoise = 4
17-03-17 21:23:48.118 -07 000000610 INF: Z Motor: After move to -0.167572, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:48.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:23:48.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:48.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:48.118 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:48.118 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:48.118 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:48.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:48.118 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:48.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:48.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:48.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:48.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:48.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:48.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:48.128 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:48.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:48.128 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:48.128 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:48.128 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:48.138 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:23:48.138 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:23:48.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36783 150\n [Camera]
17-03-17 21:23:48.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:48.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:48.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:48.768 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:48.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:48.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:48.768 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:48.778 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:48.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:48.778 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:48.778 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:23:48.958 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36783 816
17-03-17 21:23:49.108 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:49.158 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:23:49.158 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:23:49.158 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:49.158 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:23:49.158 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:23:49.158 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:49.158 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:49.158 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:23:49.158 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:23:49.168 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:23:49.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:49.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:49.318 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:49.318 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:49.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:49.318 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:49.318 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:49.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:23:49.328 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:49.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:23:49.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:49.508 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:49.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36783 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:23:49.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:49.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167579856525929. ------
17-03-17 21:23:49.518 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17397 mm
17-03-17 21:23:49.518 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:49.518 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:49.518 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38003, sync = True, waitForSettling = False)
17-03-17 21:23:49.518 -07 000000459 INF: Z Motor: Moving to -0.173967 mm, started at -0.167580 mm, distance = -6.39 um
17-03-17 21:23:49.518 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:49.518 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:23:49.518 -07 000000415 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:23:49.528 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:49.528 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:49.528 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:23:49.538 -07 000000459 INF: FPGA: Xmit ZDACW 38003\n [Z Motor]
17-03-17 21:23:49.538 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:23:49.538 -07 000000415 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:49.648 -07 000000415 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:49.648 -07 000000415 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:23:49.648 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:49.648 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:23:49.648 -07 000000459 INF: FPGA: 'ZDACW 38003' command took 0 ms to send, 1 ms to get response, and 131 ms overall
17-03-17 21:23:49.658 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:49.668 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:49.668 -07 000000382 INF: FPGA: Recv ZDACR 38003
17-03-17 21:23:49.678 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:23:49.678 -07 000000459 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-17 21:23:49.698 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:23:49.698 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:23:49.698 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:49.708 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:49.708 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:23:49.708 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:23:49.708 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:49.708 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:49.708 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:23:49.708 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:23:49.848 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:49.848 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 327 ms overall
17-03-17 21:23:50.028 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:23:50.028 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:23:50.068 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:50.068 -07 000000475 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:23:50.078 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:23:50.078 -07 000000415 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:50.078 -07 000000415 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:23:50.078 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 21:23:51.028 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:51.028 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:23:51.038 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:51.038 -07 000000415 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:51.058 -07 000000415 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:51.058 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:51.058 -07 000000415 INF: Y Motor: Moved to 72.3491 after 1539 ms (table move)
17-03-17 21:23:51.058 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173967 mm (DAC = 38003)
17-03-17 21:23:51.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.068 -07 000000458 INF: FPGA: Recv ZSGSRD 36365
17-03-17 21:23:51.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:51.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.068 -07 000000429 INF: FPGA: Recv ZSGSRD 36370
17-03-17 21:23:51.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.078 -07 000000382 INF: FPGA: Recv ZSGSRD 36374
17-03-17 21:23:51.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.088 -07 000000476 INF: FPGA: Recv ZSGSRD 36373
17-03-17 21:23:51.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.098 -07 000000576 INF: FPGA: Recv ZSGSRD 36374
17-03-17 21:23:51.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.108 -07 000000458 INF: FPGA: Recv ZSGSRD 36368
17-03-17 21:23:51.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36368
17-03-17 21:23:51.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.128 -07 000000382 INF: FPGA: Recv ZSGSRD 36368
17-03-17 21:23:51.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.138 -07 000000476 INF: FPGA: Recv ZSGSRD 36366
17-03-17 21:23:51.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:51.148 -07 000000576 INF: FPGA: Recv ZSGSRD 36370
17-03-17 21:23:51.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.158 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:51.158 -07 000000458 INF: FPGA: Recv ZPIEZORD 32686
17-03-17 21:23:51.168 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.168 -07 000000431 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.2 V.
17-03-17 21:23:51.168 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36370 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36369 (-173.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36365 (-173.1 uncal um), Max = 36374 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:23:51.168 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36370, posNoise = 4, negNoise = 5
17-03-17 21:23:51.168 -07 000000431 INF: Z Motor: After move to -0.173967, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:51.168 -07 000000431 INF: Z Motor: Settle wait time = 1542 ms, measure time = 105 ms (allowed 150 ms), total time = 1647 ms
17-03-17 21:23:51.168 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:51.218 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 21:23:51.218 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:51.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:51.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:51.218 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:51.218 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:51.218 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:51.218 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:51.218 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:51.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:51.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:51.218 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:51.238 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:23:51.238 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:23:51.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:51.288 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:51.488 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:51.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:51.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:51.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:51.518 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:51.528 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:51.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:23:51.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:23:51.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:51.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:51.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:23:51.628 -07 000000547 INF: Autofocus start
17-03-17 21:23:51.628 -07 000000547 INF: MeasureProfile start
17-03-17 21:23:51.628 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:51.628 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:51.638 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:51.638 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:51.638 -07 000000547 INF: MeasureProfile done
17-03-17 21:23:51.638 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:51.638 -07 000000547 INF: Autofocus finished
17-03-17 21:23:51.838 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:51.838 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:51.838 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173971947606981. ----------
17-03-17 21:23:51.838 -07 000000610 INF: Cycle	50	Tile	16	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:51.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36518, sync = True, waitForSettling = True)
17-03-17 21:23:51.848 -07 000000610 INF: Z Motor: Moving to -0.167169 mm, started at -0.173972 mm, distance = 6.80 um
17-03-17 21:23:51.848 -07 000000610 INF: FPGA: Xmit ZDACW 36518\n [Z Motor]
17-03-17 21:23:51.848 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:23:51.858 -07 000000610 INF: FPGA: 'ZDACW 36518' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:51.858 -07 000000569 INF: FPGA: Recv ZDACR 36518
17-03-17 21:23:51.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:51.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:51.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:51.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35310
17-03-17 21:23:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35314
17-03-17 21:23:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.038 -07 000000476 INF: FPGA: Recv ZSGSRD 35310
17-03-17 21:23:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.048 -07 000000608 INF: FPGA: Recv ZSGSRD 35307
17-03-17 21:23:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35311
17-03-17 21:23:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35317
17-03-17 21:23:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.078 -07 000000501 INF: FPGA: Recv ZSGSRD 35313
17-03-17 21:23:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35312
17-03-17 21:23:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.098 -07 000000415 INF: FPGA: Recv ZSGSRD 35315
17-03-17 21:23:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:52.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35313
17-03-17 21:23:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:52.118 -07 000000424 INF: FPGA: Recv ZPIEZORD 31244
17-03-17 21:23:52.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:52.128 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.0 V.
17-03-17 21:23:52.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35312 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35312 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35307 (-166.3 uncal um), Max = 35317 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:23:52.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35312, posNoise = 5, negNoise = 5
17-03-17 21:23:52.128 -07 000000610 INF: Z Motor: After move to -0.167169, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:52.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:52.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:52.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:52.128 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:52.128 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:52.128 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:52.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:52.128 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:52.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:52.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:23:52.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:52.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:23:52.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:52.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:23:52.138 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:52.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:52.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:52.148 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:23:52.148 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:23:52.148 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:23:52.148 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:23:52.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36695 150\n [Camera]
17-03-17 21:23:52.348 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:52.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:52.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:52.778 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:52.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:52.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:52.778 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:52.778 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:52.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:23:52.788 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:52.788 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:23:52.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36695 816
17-03-17 21:23:52.978 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.979922,
17-03-17 21:23:53.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:53.158 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:23:53.158 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:23:53.158 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:53.158 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:53.158 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:23:53.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:23:53.168 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:23:53.168 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:53.168 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:53.178 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:23:53.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:53.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:53.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:53.328 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:53.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:53.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:53.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:53.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 21:23:53.328 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:53.328 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:23:53.518 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:53.518 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:53.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36695 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:23:53.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:53.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167175131160998. ------
17-03-17 21:23:53.528 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:53.528 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17366 mm
17-03-17 21:23:53.528 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:53.528 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:53.528 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37936, sync = True, waitForSettling = False)
17-03-17 21:23:53.528 -07 000000415 INF: Z Motor: Moving to -0.173660 mm, started at -0.167175 mm, distance = -6.48 um
17-03-17 21:23:53.528 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:23:53.528 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:23:53.538 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:53.538 -07 000000415 INF: FPGA: Xmit ZDACW 37936\n [Z Motor]
17-03-17 21:23:53.538 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:23:53.548 -07 000000415 INF: FPGA: 'ZDACW 37936' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:23:53.548 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:53.548 -07 000000459 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:23:53.558 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:23:53.558 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:53.558 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:53.558 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:23:53.558 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:53.568 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:53.568 -07 000000459 INF: FPGA: Recv ZDACR 37936
17-03-17 21:23:53.578 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:53.578 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:53.578 -07 000000415 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:23:53.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:23:53.718 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:23:53.718 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:53.728 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:23:53.728 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:23:53.728 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:53.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:53.728 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:23:53.728 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:23:53.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:23:53.758 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:53.758 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:23:53.948 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:23:53.948 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:53.988 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:53.998 -07 000000608 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:23:53.998 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:23:53.998 -07 000000512 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:53.998 -07 000000512 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 21:23:53.998 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-17 21:23:54.948 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:54.948 -07 000000547 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:23:54.958 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:54.958 -07 000000512 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:54.978 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:54.978 -07 000000512 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:54.978 -07 000000512 INF: Y Motor: Moved to 73.1758 after 1445 ms (table move)
17-03-17 21:23:54.978 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173660 mm (DAC = 37936)
17-03-17 21:23:54.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:54.988 -07 000000415 INF: FPGA: Recv ZSGSRD 36329
17-03-17 21:23:54.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:23:54.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:54.988 -07 000000459 INF: FPGA: Recv ZSGSRD 36312
17-03-17 21:23:54.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:54.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:54.998 -07 000000569 INF: FPGA: Recv ZSGSRD 36322
17-03-17 21:23:55.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.008 -07 000000431 INF: FPGA: Recv ZSGSRD 36328
17-03-17 21:23:55.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.018 -07 000000512 INF: FPGA: Recv ZSGSRD 36326
17-03-17 21:23:55.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.028 -07 000000547 INF: FPGA: Recv ZSGSRD 36327
17-03-17 21:23:55.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.038 -07 000000415 INF: FPGA: Recv ZSGSRD 36323
17-03-17 21:23:55.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.048 -07 000000576 INF: FPGA: Recv ZSGSRD 36321
17-03-17 21:23:55.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.058 -07 000000608 INF: FPGA: Recv ZSGSRD 36319
17-03-17 21:23:55.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.068 -07 000000627 INF: FPGA: Recv ZSGSRD 36312
17-03-17 21:23:55.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.078 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:55.078 -07 000000569 INF: FPGA: Recv ZPIEZORD 32631
17-03-17 21:23:55.088 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.088 -07 000000429 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.2 V.
17-03-17 21:23:55.088 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36322 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36322 (-172.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36312 (-172.7 uncal um), Max = 36329 (-172.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:23:55.088 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36322, posNoise = 7, negNoise = 10
17-03-17 21:23:55.088 -07 000000429 INF: Z Motor: After move to -0.173660, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:55.088 -07 000000429 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:23:55.088 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:55.138 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 21:23:55.138 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:55.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:55.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:55.138 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:55.138 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:55.138 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:55.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:55.148 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:23:55.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:55.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 21:23:55.148 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:55.158 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:23:55.158 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:23:55.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:55.208 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:23:55.408 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:23:55.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:23:55.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:55.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:23:55.448 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:55.448 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:55.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:23:55.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:23:55.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:55.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:23:55.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:23:55.548 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:55.548 -07 000000480 INF: Autofocus start
17-03-17 21:23:55.548 -07 000000480 INF: MeasureProfile start
17-03-17 21:23:55.548 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:55.558 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:55.558 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:55.558 -07 000000480 INF: MeasureProfile done
17-03-17 21:23:55.568 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:55.568 -07 000000480 INF: Autofocus finished
17-03-17 21:23:55.758 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:55.758 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:55.758 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173663585424176. ----------
17-03-17 21:23:55.758 -07 000000610 INF: Cycle	50	Tile	17	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:55.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36451, sync = True, waitForSettling = True)
17-03-17 21:23:55.768 -07 000000610 INF: Z Motor: Moving to -0.166862 mm, started at -0.173664 mm, distance = 6.80 um
17-03-17 21:23:55.768 -07 000000610 INF: FPGA: Xmit ZDACW 36451\n [Z Motor]
17-03-17 21:23:55.768 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:23:55.778 -07 000000610 INF: FPGA: 'ZDACW 36451' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:55.778 -07 000000431 INF: FPGA: Recv ZDACR 36451
17-03-17 21:23:55.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:23:55.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.938 -07 000000476 INF: FPGA: Recv ZSGSRD 35261
17-03-17 21:23:55.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:55.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.948 -07 000000438 INF: FPGA: Recv ZSGSRD 35266
17-03-17 21:23:55.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.958 -07 000000475 INF: FPGA: Recv ZSGSRD 35263
17-03-17 21:23:55.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.968 -07 000000415 INF: FPGA: Recv ZSGSRD 35266
17-03-17 21:23:55.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.978 -07 000000475 INF: FPGA: Recv ZSGSRD 35271
17-03-17 21:23:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.988 -07 000000576 INF: FPGA: Recv ZSGSRD 35265
17-03-17 21:23:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:55.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35263
17-03-17 21:23:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:56.008 -07 000000429 INF: FPGA: Recv ZSGSRD 35263
17-03-17 21:23:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:56.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:56.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35268
17-03-17 21:23:56.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:56.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35267
17-03-17 21:23:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:56.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:56.038 -07 000000576 INF: FPGA: Recv ZPIEZORD 31195
17-03-17 21:23:56.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:56.048 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.0 V.
17-03-17 21:23:56.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35265 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35266 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35261 (-166.0 uncal um), Max = 35271 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:23:56.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35265, posNoise = 6, negNoise = 4
17-03-17 21:23:56.048 -07 000000610 INF: Z Motor: After move to -0.166862, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:56.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:23:56.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:56.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:56.048 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:56.048 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:56.048 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:23:56.048 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:56.048 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:23:56.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:23:56.048 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:23:56.048 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:23:56.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:23:56.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:23:56.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:23:56.058 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:23:56.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:23:56.058 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:23:56.068 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:23:56.068 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:23:56.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:23:56.068 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:23:56.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36627 150\n [Camera]
17-03-17 21:23:56.268 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:23:56.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:23:56.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:23:56.708 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:56.708 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:56.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:23:56.708 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:23:56.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:23:56.708 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:56.708 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:56.708 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:23:56.868 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:23:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:23:56.898 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36627 816
17-03-17 21:23:57.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:23:57.088 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:23:57.088 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:23:57.088 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:57.088 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:23:57.088 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:23:57.088 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:57.088 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:57.088 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:57.088 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:23:57.098 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:23:57.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:23:57.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:23:57.248 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:23:57.248 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:23:57.248 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:23:57.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:23:57.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:23:57.258 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:23:57.258 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:23:57.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:23:57.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:23:57.438 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:23:57.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36627 150' command took 2 ms to send, 1368 ms to get response, and 1372 ms overall
17-03-17 21:23:57.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:23:57.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166873193190335. ------
17-03-17 21:23:57.448 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:57.448 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17321 mm
17-03-17 21:23:57.448 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:23:57.448 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:23:57.568 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:23:57.568 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37837, sync = True, waitForSettling = False)
17-03-17 21:23:57.568 -07 000000608 INF: Z Motor: Moving to -0.173207 mm, started at -0.166873 mm, distance = -6.33 um
17-03-17 21:23:57.568 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:57.568 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 117 ms overall
17-03-17 21:23:57.568 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:57.568 -07 000000547 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:23:57.578 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:57.578 -07 000000480 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:57.578 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:23:57.578 -07 000000480 INF: Y Motor: Moving 1355 steps-34
17-03-17 21:23:57.578 -07 000000608 INF: FPGA: Xmit ZDACW 37837\n [Z Motor]
17-03-17 21:23:57.578 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:23:57.588 -07 000000608 INF: FPGA: 'ZDACW 37837' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:23:57.588 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:23:57.598 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:23:57.608 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:57.608 -07 000000438 INF: FPGA: Recv ZDACR 37837
17-03-17 21:23:57.618 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:23:57.618 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:23:57.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:23:57.648 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:23:57.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:57.648 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:23:57.648 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:23:57.648 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:57.658 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:23:57.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:23:57.658 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:23:57.658 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:23:57.788 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:23:57.788 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:23:57.968 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:23:57.968 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:23:57.998 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:58.008 -07 000000475 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:23:58.008 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:23:58.008 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:58.008 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:23:58.008 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 21:23:58.338 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.016692,
17-03-17 21:23:58.958 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:23:58.958 -07 000000459 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:23:58.968 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:23:58.968 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:23:58.978 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:23:58.978 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:23:58.978 -07 000000480 INF: Y Motor: Moved to 74.0073 after 1529 ms (table move)
17-03-17 21:23:58.988 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173207 mm (DAC = 37837)
17-03-17 21:23:58.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:58.988 -07 000000459 INF: FPGA: Recv ZSGSRD 36247
17-03-17 21:23:58.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:58.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:58.998 -07 000000626 INF: FPGA: Recv ZSGSRD 36251
17-03-17 21:23:59.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.008 -07 000000012 INF: FPGA: Recv ZSGSRD 36259
17-03-17 21:23:59.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.018 -07 000000501 INF: FPGA: Recv ZSGSRD 36250
17-03-17 21:23:59.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.028 -07 000000431 INF: FPGA: Recv ZSGSRD 36255
17-03-17 21:23:59.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36256
17-03-17 21:23:59.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:59.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.048 -07 000000459 INF: FPGA: Recv ZSGSRD 36254
17-03-17 21:23:59.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.058 -07 000000476 INF: FPGA: Recv ZSGSRD 36248
17-03-17 21:23:59.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.068 -07 000000475 INF: FPGA: Recv ZSGSRD 36244
17-03-17 21:23:59.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:23:59.078 -07 000000429 INF: FPGA: Recv ZSGSRD 36254
17-03-17 21:23:59.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.088 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:23:59.088 -07 000000415 INF: FPGA: Recv ZPIEZORD 32505
17-03-17 21:23:59.098 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.098 -07 000000569 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.3 V.
17-03-17 21:23:59.098 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36252 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36252 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36244 (-172.3 uncal um), Max = 36259 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:23:59.098 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36252, posNoise = 7, negNoise = 8
17-03-17 21:23:59.098 -07 000000569 INF: Z Motor: After move to -0.173207, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:23:59.098 -07 000000569 INF: Z Motor: Settle wait time = 1419 ms, measure time = 110 ms (allowed 150 ms), total time = 1529 ms
17-03-17 21:23:59.098 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:23:59.138 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1685 ms
17-03-17 21:23:59.138 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:23:59.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:23:59.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:23:59.138 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:23:59.138 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:23:59.138 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:23:59.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:23:59.138 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:23:59.138 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:23:59.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:23:59.148 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:23:59.158 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:23:59.158 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:23:59.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:23:59.208 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:23:59.408 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:23:59.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:23:59.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:23:59.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:23:59.438 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:23:59.438 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:23:59.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:23:59.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:23:59.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:23:59.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:23:59.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:23:59.638 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:23:59.638 -07 000000476 INF: Autofocus start
17-03-17 21:23:59.638 -07 000000476 INF: MeasureProfile start
17-03-17 21:23:59.638 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:23:59.648 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:23:59.648 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:23:59.648 -07 000000476 INF: MeasureProfile done
17-03-17 21:23:59.648 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:23:59.648 -07 000000476 INF: Autofocus finished
17-03-17 21:23:59.848 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:23:59.848 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:23:59.848 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173213890574253. ----------
17-03-17 21:23:59.848 -07 000000610 INF: Cycle	50	Tile	18	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:23:59.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36352, sync = True, waitForSettling = True)
17-03-17 21:23:59.858 -07 000000610 INF: Z Motor: Moving to -0.166409 mm, started at -0.173214 mm, distance = 6.81 um
17-03-17 21:23:59.858 -07 000000610 INF: FPGA: Xmit ZDACW 36352\n [Z Motor]
17-03-17 21:23:59.858 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:23:59.868 -07 000000610 INF: FPGA: 'ZDACW 36352' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:23:59.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:23:59.868 -07 000000547 INF: FPGA: Recv ZDACR 36352
17-03-17 21:23:59.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:23:59.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35193
17-03-17 21:24:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.038 -07 000000429 INF: FPGA: Recv ZSGSRD 35190
17-03-17 21:24:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.048 -07 000000569 INF: FPGA: Recv ZSGSRD 35197
17-03-17 21:24:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.058 -07 000000608 INF: FPGA: Recv ZSGSRD 35198
17-03-17 21:24:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.068 -07 000000415 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:24:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.078 -07 000000459 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:24:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.088 -07 000000429 INF: FPGA: Recv ZSGSRD 35191
17-03-17 21:24:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.098 -07 000000424 INF: FPGA: Recv ZSGSRD 35192
17-03-17 21:24:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:24:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:00.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35192
17-03-17 21:24:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:00.128 -07 000000459 INF: FPGA: Recv ZPIEZORD 31094
17-03-17 21:24:00.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:00.138 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.0 V.
17-03-17 21:24:00.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35194 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35194 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35190 (-165.5 uncal um), Max = 35198 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:00.138 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35194, posNoise = 4, negNoise = 4
17-03-17 21:24:00.138 -07 000000610 INF: Z Motor: After move to -0.166409, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:00.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:24:00.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:00.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:00.138 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:00.138 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:00.138 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:00.138 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:00.138 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:24:00.138 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:00.138 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:00.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:00.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:00.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:00.148 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:00.148 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:00.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:24:00.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:00.158 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:24:00.158 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:24:00.158 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:00.158 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:24:00.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36529 150\n [Camera]
17-03-17 21:24:00.358 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:00.788 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:00.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:00.788 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:00.788 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:00.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:00.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:00.788 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:00.788 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:00.798 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:00.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:00.978 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36529 816
17-03-17 21:24:01.128 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:01.168 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:24:01.168 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:24:01.168 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:01.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:24:01.168 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:24:01.168 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:01.168 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:01.168 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:24:01.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:01.178 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:24:01.338 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:01.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:01.338 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:01.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:01.338 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:01.338 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:01.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:01.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:24:01.348 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:01.348 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:24:01.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:01.528 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:01.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36529 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:24:01.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:24:01.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.16641707412827. ------
17-03-17 21:24:01.538 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:01.538 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17286 mm
17-03-17 21:24:01.538 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:01.538 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:01.538 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 37761, sync = True, waitForSettling = False)
17-03-17 21:24:01.538 -07 000000012 INF: Z Motor: Moving to -0.172859 mm, started at -0.166417 mm, distance = -6.44 um
17-03-17 21:24:01.538 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:24:01.538 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 21:24:01.548 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:01.548 -07 000000012 INF: FPGA: Xmit ZDACW 37761\n [Z Motor]
17-03-17 21:24:01.548 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:24:01.558 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:01.558 -07 000000012 INF: FPGA: 'ZDACW 37761' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:24:01.558 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:24:01.568 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:01.568 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:24:01.688 -07 000000429 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:01.688 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:01.688 -07 000000431 INF: FPGA: Recv ZDACR 37761
17-03-17 21:24:01.688 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:01.688 -07 000000429 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:24:01.698 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 21:24:01.698 -07 000000012 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-17 21:24:01.698 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:01.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:24:01.738 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:24:01.738 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:01.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:24:01.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:24:01.738 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:01.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:01.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:24:01.748 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:24:01.748 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:24:01.768 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:01.768 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 81 ms to get response, and 222 ms overall
17-03-17 21:24:01.868 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:02.068 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:24:02.068 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:24:02.098 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:02.098 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:24:02.108 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:02.108 -07 000000429 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:02.108 -07 000000429 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:24:02.108 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-17 21:24:03.058 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:03.058 -07 000000480 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:24:03.068 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:03.068 -07 000000429 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:03.078 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:03.078 -07 000000429 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:03.078 -07 000000429 INF: Y Motor: Moved to 74.8315 after 1542 ms (table move)
17-03-17 21:24:03.078 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172859 mm (DAC = 37761)
17-03-17 21:24:03.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.088 -07 000000431 INF: FPGA: Recv ZSGSRD 36196
17-03-17 21:24:03.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:03.098 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.098 -07 000000512 INF: FPGA: Recv ZSGSRD 36197
17-03-17 21:24:03.108 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.108 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.108 -07 000000608 INF: FPGA: Recv ZSGSRD 36194
17-03-17 21:24:03.118 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.118 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.118 -07 000000476 INF: FPGA: Recv ZSGSRD 36200
17-03-17 21:24:03.128 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.128 -07 000000429 INF: FPGA: Recv ZSGSRD 36202
17-03-17 21:24:03.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.138 -07 000000431 INF: FPGA: Recv ZSGSRD 36206
17-03-17 21:24:03.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.148 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.148 -07 000000012 INF: FPGA: Recv ZSGSRD 36198
17-03-17 21:24:03.158 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.158 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.158 -07 000000480 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:24:03.168 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.168 -07 000000476 INF: FPGA: Recv ZSGSRD 36194
17-03-17 21:24:03.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:03.178 -07 000000429 INF: FPGA: Recv ZSGSRD 36196
17-03-17 21:24:03.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.188 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:03.188 -07 000000431 INF: FPGA: Recv ZPIEZORD 32473
17-03-17 21:24:03.198 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.198 -07 000000547 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.762 V. Piezo Error = -8.2 V.
17-03-17 21:24:03.198 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36198 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36196 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36192 (-171.9 uncal um), Max = 36206 (-172.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:24:03.198 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36198, posNoise = 8, negNoise = 6
17-03-17 21:24:03.198 -07 000000547 INF: Z Motor: After move to -0.172859, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:03.198 -07 000000547 INF: Z Motor: Settle wait time = 1545 ms, measure time = 111 ms (allowed 150 ms), total time = 1656 ms
17-03-17 21:24:03.198 -07 000000547 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:03.238 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 21:24:03.238 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:03.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:03.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:03.238 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:03.238 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:03.238 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:03.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:03.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 6 ms.
17-03-17 21:24:03.248 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:03.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:03.258 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:03.268 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:24:03.268 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 22 ms.
17-03-17 21:24:03.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:03.308 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:03.508 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:03.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:03.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:03.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:03.548 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:03.548 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:03.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:24:03.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:24:03.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:03.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:24:03.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:24:03.648 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:03.648 -07 000000576 INF: Autofocus start
17-03-17 21:24:03.648 -07 000000576 INF: MeasureProfile start
17-03-17 21:24:03.648 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:03.658 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:03.658 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:03.658 -07 000000576 INF: MeasureProfile done
17-03-17 21:24:03.658 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:24:03.658 -07 000000576 INF: Autofocus finished
17-03-17 21:24:03.718 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.997626,
17-03-17 21:24:03.858 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:03.858 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:03.868 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172866983118598. ----------
17-03-17 21:24:03.868 -07 000000610 INF: Cycle	50	Tile	19	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:03.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36258, sync = True, waitForSettling = True)
17-03-17 21:24:03.868 -07 000000610 INF: Z Motor: Moving to -0.165978 mm, started at -0.172867 mm, distance = 6.89 um
17-03-17 21:24:03.868 -07 000000610 INF: FPGA: Xmit ZDACW 36258\n [Z Motor]
17-03-17 21:24:03.868 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:24:03.878 -07 000000610 INF: FPGA: 'ZDACW 36258' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:03.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:03.878 -07 000000608 INF: FPGA: Recv ZDACR 36258
17-03-17 21:24:03.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:03.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:04.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.038 -07 000000012 INF: FPGA: Recv ZSGSRD 35122
17-03-17 21:24:04.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35124
17-03-17 21:24:04.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:24:04.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.078 -07 000000424 INF: FPGA: Recv ZSGSRD 35132
17-03-17 21:24:04.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.098 -07 000000501 INF: FPGA: Recv ZSGSRD 35128
17-03-17 21:24:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.108 -07 000000458 INF: FPGA: Recv ZSGSRD 35127
17-03-17 21:24:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.118 -07 000000476 INF: FPGA: Recv ZSGSRD 35125
17-03-17 21:24:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.128 -07 000000012 INF: FPGA: Recv ZSGSRD 35127
17-03-17 21:24:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35130
17-03-17 21:24:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.148 -07 000000480 INF: FPGA: Recv ZSGSRD 35125
17-03-17 21:24:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:04.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35128
17-03-17 21:24:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:04.168 -07 000000429 INF: FPGA: Recv ZPIEZORD 31035
17-03-17 21:24:04.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:04.178 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.0 V.
17-03-17 21:24:04.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35127 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35127 (-165.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35122 (-165.1 uncal um), Max = 35132 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:24:04.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35127, posNoise = 5, negNoise = 5
17-03-17 21:24:04.178 -07 000000610 INF: Z Motor: After move to -0.165978, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:04.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-17 21:24:04.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:04.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:04.178 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:04.178 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:04.178 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:04.178 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:04.178 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:04.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:04.178 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:04.178 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:04.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:04.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:04.188 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:04.188 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:04.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:04.188 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:04.198 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:04.198 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:04.198 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:04.198 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:04.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 36435 150\n [Camera]
17-03-17 21:24:04.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:04.828 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:04.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:04.828 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:04.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:04.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:04.838 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:04.838 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:04.838 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:04.838 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:04.838 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:05.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36435 816
17-03-17 21:24:05.168 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:05.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:24:05.208 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:24:05.208 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:05.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:24:05.208 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:24:05.208 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:05.218 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:24:05.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:24:05.218 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:05.228 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:24:05.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:05.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:05.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:05.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:05.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:05.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:05.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:24:05.378 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:05.378 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:05.378 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:24:05.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:24:05.568 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:05.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 36435 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:24:05.788 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:24:05.788 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:24:05.788 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:24:05.788 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:24:05.788 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:05.788 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:05.788 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:05.788 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:24:05.788 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:24:05.788 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:24:05.798 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 21:24:05.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:24:05.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:24:05.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:24:05.878 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:24:05.878 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:24:05.878 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 21:24:05.888 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:05.888 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:24:06.388 -07 000000547 INF: FPGA: Recv EMIN
17-03-17 21:24:06.388 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:24:06.388 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:24:06.388 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 21:24:06.398 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:06.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:06.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165986651914772. ------
17-03-17 21:24:06.398 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:06.398 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14047 mm
17-03-17 21:24:06.398 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:06.398 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:24:06.398 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:24:06.398 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:06.398 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30686, sync = True, waitForSettling = False)
17-03-17 21:24:06.398 -07 000000424 INF: Z Motor: Moving to -0.140472 mm, started at -0.165987 mm, distance = 25.52 um
17-03-17 21:24:06.408 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:24:06.408 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:06.418 -07 000000424 INF: FPGA: Xmit ZDACW 30686\n [Z Motor]
17-03-17 21:24:06.418 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:24:06.428 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:06.428 -07 000000424 INF: FPGA: 'ZDACW 30686' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:24:06.428 -07 000000608 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:24:06.438 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:24:06.438 -07 000000476 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:06.438 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:06.438 -07 000000438 INF: FPGA: Recv ZDACR 30686
17-03-17 21:24:06.438 -07 000000476 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:24:06.438 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:24:06.448 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:06.448 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:24:06.448 -07 000000424 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:24:06.608 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:06.608 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:06.878 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:08.068 -07 000000576 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:24:08.068 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1633 ms overall
17-03-17 21:24:08.068 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:24:08.068 -07 000000476 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:24:08.068 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.919 mm, average velocity = 9.136 mm/sec
17-03-17 21:24:09.078 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.973092,
17-03-17 21:24:10.918 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:10.918 -07 000000547 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:24:10.928 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:10.928 -07 000000476 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:10.958 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:10.958 -07 000000476 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 21:24:10.958 -07 000000476 INF: Y Motor: Moved to 59.9111 after 4553 ms
17-03-17 21:24:10.958 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140472 mm (DAC = 30686)
17-03-17 21:24:10.958 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:10.958 -07 000000458 INF: FPGA: Recv ZSGSRD 31161
17-03-17 21:24:10.968 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:24:10.968 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:10.968 -07 000000608 INF: FPGA: Recv ZSGSRD 31159
17-03-17 21:24:10.978 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:10.978 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:10.978 -07 000000415 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:24:10.988 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:10.988 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:10.988 -07 000000382 INF: FPGA: Recv ZSGSRD 31152
17-03-17 21:24:10.998 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:10.998 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:10.998 -07 000000476 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:24:11.008 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.008 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.008 -07 000000569 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:24:11.018 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.018 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.018 -07 000000480 INF: FPGA: Recv ZSGSRD 31160
17-03-17 21:24:11.028 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.028 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.028 -07 000000459 INF: FPGA: Recv ZSGSRD 31153
17-03-17 21:24:11.038 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.038 -07 000000458 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:24:11.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.048 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.048 -07 000000608 INF: FPGA: Recv ZSGSRD 31162
17-03-17 21:24:11.058 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.058 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:11.058 -07 000000415 INF: FPGA: Recv ZPIEZORD 26871
17-03-17 21:24:11.068 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.068 -07 000000501 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.682 V. Piezo Error = -9.4 V.
17-03-17 21:24:11.068 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31157 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31156 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31152 (-139.6 uncal um), Max = 31162 (-139.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:24:11.068 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31157, posNoise = 5, negNoise = 5
17-03-17 21:24:11.068 -07 000000501 INF: Z Motor: After move to -0.140472, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:11.068 -07 000000501 INF: Z Motor: Settle wait time = 4555 ms, measure time = 107 ms (allowed 150 ms), total time = 4662 ms
17-03-17 21:24:11.068 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:11.118 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 21:24:11.118 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:11.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:11.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:11.118 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:11.118 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:11.118 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:11.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:11.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:11.118 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:24:11.148 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 21:24:11.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:11.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:24:11.148 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:11.168 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:24:11.168 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 21:24:11.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:11.208 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:11.408 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:11.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:11.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:11.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:24:11.448 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:11.448 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:11.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:24:11.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:24:11.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:11.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:11.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:24:11.548 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:11.548 -07 000000501 INF: Image SNR check: start
17-03-17 21:24:11.548 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:11.558 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:11.558 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:11.568 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=63.20]
17-03-17 21:24:11.568 -07 000000501 INF: Autofocus start
17-03-17 21:24:11.568 -07 000000501 INF: MeasureProfile start
17-03-17 21:24:11.578 -07 000000501 INF: MeasureProfile done
17-03-17 21:24:11.578 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:24:11.578 -07 000000501 INF: Autofocus finished
17-03-17 21:24:11.758 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:11.758 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:11.758 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140482529711981. ----------
17-03-17 21:24:11.758 -07 000000610 INF: Cycle	50	Tile	1	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:11.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29181, sync = True, waitForSettling = True)
17-03-17 21:24:11.768 -07 000000610 INF: Z Motor: Moving to -0.133582 mm, started at -0.140483 mm, distance = 6.90 um
17-03-17 21:24:11.768 -07 000000610 INF: FPGA: Xmit ZDACW 29181\n [Z Motor]
17-03-17 21:24:11.768 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:24:11.778 -07 000000610 INF: FPGA: 'ZDACW 29181' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:11.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:11.778 -07 000000627 INF: FPGA: Recv ZDACR 29181
17-03-17 21:24:11.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:11.878 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:11.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.938 -07 000000424 INF: FPGA: Recv ZSGSRD 30084
17-03-17 21:24:11.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30082
17-03-17 21:24:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.958 -07 000000415 INF: FPGA: Recv ZSGSRD 30080
17-03-17 21:24:11.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.968 -07 000000431 INF: FPGA: Recv ZSGSRD 30082
17-03-17 21:24:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.978 -07 000000547 INF: FPGA: Recv ZSGSRD 30082
17-03-17 21:24:11.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.988 -07 000000429 INF: FPGA: Recv ZSGSRD 30083
17-03-17 21:24:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:11.998 -07 000000476 INF: FPGA: Recv ZSGSRD 30078
17-03-17 21:24:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:12.008 -07 000000608 INF: FPGA: Recv ZSGSRD 30085
17-03-17 21:24:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:12.018 -07 000000012 INF: FPGA: Recv ZSGSRD 30084
17-03-17 21:24:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:12.028 -07 000000459 INF: FPGA: Recv ZSGSRD 30081
17-03-17 21:24:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:12.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:12.038 -07 000000424 INF: FPGA: Recv ZPIEZORD 25732
17-03-17 21:24:12.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:12.048 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.6 V.
17-03-17 21:24:12.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30082 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30082 (-132.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30078 (-132.8 uncal um), Max = 30085 (-132.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:12.048 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30082, posNoise = 3, negNoise = 4
17-03-17 21:24:12.048 -07 000000610 INF: Z Motor: After move to -0.133582, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:12.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:12.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:12.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:12.048 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:12.048 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:12.048 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:12.048 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:12.048 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:12.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:12.048 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:24:12.048 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:12.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:12.048 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:24:12.058 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:12.058 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:12.058 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:12.058 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:24:12.068 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:24:12.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:12.078 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:24:12.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:12.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:24:12.078 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 21:24:12.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29358 150\n [Camera]
17-03-17 21:24:12.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:12.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:12.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:12.718 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:12.718 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:12.718 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:24:12.718 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:12.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:12.718 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:12.718 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:12.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:24:12.908 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29358 817
17-03-17 21:24:13.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:13.098 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:24:13.098 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:24:13.098 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:13.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:24:13.098 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:24:13.098 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:13.098 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:24:13.098 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:24:13.098 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:24:13.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:24:13.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:13.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:13.268 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:13.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:13.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:24:13.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:13.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:13.268 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:13.268 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:13.268 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:24:13.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:13.458 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:13.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29358 150' command took 2 ms to send, 1364 ms to get response, and 1373 ms overall
17-03-17 21:24:13.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:13.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133576501659588. ------
17-03-17 21:24:13.468 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:13.468 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14005 mm
17-03-17 21:24:13.468 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:13.468 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:24:13.468 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 21:24:13.468 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:13.578 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:24:13.578 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:13.578 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30593, sync = True, waitForSettling = False)
17-03-17 21:24:13.578 -07 000000429 INF: Z Motor: Moving to -0.140046 mm, started at -0.133577 mm, distance = -6.47 um
17-03-17 21:24:13.588 -07 000000429 INF: FPGA: Xmit ZDACW 30593\n [Z Motor]
17-03-17 21:24:13.588 -07 000000438 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:24:13.588 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:24:13.588 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:13.588 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:13.588 -07 000000512 INF: Y Motor: Moving 1330 steps2
17-03-17 21:24:13.588 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:24:13.598 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:13.598 -07 000000429 INF: FPGA: 'ZDACW 30593' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:24:13.608 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:13.618 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:13.618 -07 000000569 INF: FPGA: Recv ZDACR 30593
17-03-17 21:24:13.628 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:24:13.628 -07 000000429 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:24:13.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:24:13.658 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:24:13.658 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:13.658 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:24:13.658 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:24:13.658 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:13.668 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:13.668 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:24:13.668 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:24:13.668 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:24:13.798 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:13.798 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-17 21:24:13.978 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:24:13.978 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 21:24:14.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:14.018 -07 000000476 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:24:14.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:14.028 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:14.028 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:24:14.028 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 21:24:14.448 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.988112,
17-03-17 21:24:14.978 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:14.978 -07 000000459 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:24:14.988 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:14.988 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:15.008 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:15.008 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:24:15.008 -07 000000512 INF: Y Motor: Moved to 60.7334 after 1540 ms (table move)
17-03-17 21:24:15.008 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140046 mm (DAC = 30593)
17-03-17 21:24:15.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.018 -07 000000458 INF: FPGA: Recv ZSGSRD 31094
17-03-17 21:24:15.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:24:15.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.018 -07 000000459 INF: FPGA: Recv ZSGSRD 31099
17-03-17 21:24:15.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.028 -07 000000480 INF: FPGA: Recv ZSGSRD 31094
17-03-17 21:24:15.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.038 -07 000000547 INF: FPGA: Recv ZSGSRD 31083
17-03-17 21:24:15.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.048 -07 000000512 INF: FPGA: Recv ZSGSRD 31091
17-03-17 21:24:15.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.058 -07 000000458 INF: FPGA: Recv ZSGSRD 31090
17-03-17 21:24:15.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.068 -07 000000459 INF: FPGA: Recv ZSGSRD 31082
17-03-17 21:24:15.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.078 -07 000000480 INF: FPGA: Recv ZSGSRD 31089
17-03-17 21:24:15.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.088 -07 000000476 INF: FPGA: Recv ZSGSRD 31100
17-03-17 21:24:15.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.098 -07 000000382 INF: FPGA: Recv ZSGSRD 31096
17-03-17 21:24:15.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.108 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:15.108 -07 000000415 INF: FPGA: Recv ZPIEZORD 27076
17-03-17 21:24:15.118 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.118 -07 000000431 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -8.8 V.
17-03-17 21:24:15.118 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31092 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31092 (-139.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31082 (-139.2 uncal um), Max = 31100 (-139.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:24:15.118 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31092, posNoise = 8, negNoise = 10
17-03-17 21:24:15.118 -07 000000431 INF: Z Motor: After move to -0.140046, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:15.118 -07 000000431 INF: Z Motor: Settle wait time = 1429 ms, measure time = 103 ms (allowed 150 ms), total time = 1532 ms
17-03-17 21:24:15.118 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:15.168 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 21:24:15.168 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:15.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:15.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:15.168 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:15.168 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:15.168 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:15.168 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:15.168 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:15.168 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:15.178 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:15.178 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:15.188 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:24:15.188 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:24:15.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:15.228 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:15.428 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:15.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:15.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:15.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:15.468 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:15.468 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:15.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:24:15.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:24:15.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:15.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:24:15.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 21:24:15.578 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:15.578 -07 000000608 INF: Autofocus start
17-03-17 21:24:15.578 -07 000000608 INF: MeasureProfile start
17-03-17 21:24:15.578 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:15.588 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:15.588 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:15.588 -07 000000608 INF: MeasureProfile done
17-03-17 21:24:15.588 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:24:15.588 -07 000000608 INF: Autofocus finished
17-03-17 21:24:15.788 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:15.788 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:24:15.788 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140064955922767. ----------
17-03-17 21:24:15.788 -07 000000610 INF: Cycle	50	Tile	2	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:15.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29101, sync = True, waitForSettling = True)
17-03-17 21:24:15.798 -07 000000610 INF: Z Motor: Moving to -0.133216 mm, started at -0.140065 mm, distance = 6.85 um
17-03-17 21:24:15.798 -07 000000610 INF: FPGA: Xmit ZDACW 29101\n [Z Motor]
17-03-17 21:24:15.798 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:24:15.808 -07 000000610 INF: FPGA: 'ZDACW 29101' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:15.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:15.808 -07 000000627 INF: FPGA: Recv ZDACR 29101
17-03-17 21:24:15.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.968 -07 000000626 INF: FPGA: Recv ZSGSRD 30025
17-03-17 21:24:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:24:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30024
17-03-17 21:24:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:15.998 -07 000000501 INF: FPGA: Recv ZSGSRD 30027
17-03-17 21:24:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:16.008 -07 000000382 INF: FPGA: Recv ZSGSRD 30024
17-03-17 21:24:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:16.018 -07 000000480 INF: FPGA: Recv ZSGSRD 30027
17-03-17 21:24:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:16.028 -07 000000438 INF: FPGA: Recv ZSGSRD 30028
17-03-17 21:24:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:16.038 -07 000000459 INF: FPGA: Recv ZSGSRD 30025
17-03-17 21:24:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:16.048 -07 000000431 INF: FPGA: Recv ZSGSRD 30027
17-03-17 21:24:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:16.058 -07 000000627 INF: FPGA: Recv ZSGSRD 30027
17-03-17 21:24:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:16.068 -07 000000501 INF: FPGA: Recv ZPIEZORD 25682
17-03-17 21:24:16.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:16.078 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.5 V.
17-03-17 21:24:16.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30026 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30027 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30024 (-132.4 uncal um), Max = 30029 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:24:16.078 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30026, posNoise = 3, negNoise = 2
17-03-17 21:24:16.078 -07 000000610 INF: Z Motor: After move to -0.133216, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:16.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:24:16.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:16.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:16.078 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:16.078 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:16.078 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:16.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:16.078 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:16.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:16.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:16.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:16.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:16.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:16.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:16.088 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:16.088 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:24:16.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:16.098 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:24:16.098 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:24:16.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:24:16.098 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:24:16.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29277 150\n [Camera]
17-03-17 21:24:16.298 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:16.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:16.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:16.738 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:16.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:16.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:16.738 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:16.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:16.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:16.738 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:16.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:16.878 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:16.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29277 816
17-03-17 21:24:17.078 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:17.138 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:24:17.138 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:24:17.138 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:17.138 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:17.138 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:24:17.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:24:17.138 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:24:17.138 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:17.148 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:17.148 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:24:17.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:17.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:17.288 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:17.288 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:17.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:17.288 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:17.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:17.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:24:17.298 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:17.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:24:17.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:17.478 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:17.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29277 150' command took 2 ms to send, 1362 ms to get response, and 1373 ms overall
17-03-17 21:24:17.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:17.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.13321674577965. ------
17-03-17 21:24:17.598 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:17.598 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13965 mm
17-03-17 21:24:17.598 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:17.598 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:17.598 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30506, sync = True, waitForSettling = False)
17-03-17 21:24:17.598 -07 000000415 INF: Z Motor: Moving to -0.139648 mm, started at -0.133217 mm, distance = -6.43 um
17-03-17 21:24:17.598 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:24:17.598 -07 000000476 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 21:24:17.608 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:24:17.608 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:17.618 -07 000000415 INF: FPGA: Xmit ZDACW 30506\n [Z Motor]
17-03-17 21:24:17.618 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:24:17.628 -07 000000415 INF: FPGA: 'ZDACW 30506' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:24:17.628 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:17.628 -07 000000429 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:24:17.638 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:24:17.638 -07 000000476 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:17.638 -07 000000476 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:17.638 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:24:17.638 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:17.638 -07 000000480 INF: FPGA: Recv ZDACR 30506
17-03-17 21:24:17.648 -07 000000415 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:17.648 -07 000000415 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:24:17.648 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:17.688 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:24:17.688 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:24:17.688 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:17.698 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:24:17.698 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:24:17.698 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:17.698 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:24:17.698 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:24:17.698 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:24:17.708 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:24:17.808 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:17.808 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:24:18.018 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:24:18.018 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:24:18.058 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:18.058 -07 000000501 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:24:18.068 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:18.068 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:18.068 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:24:18.068 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-17 21:24:19.018 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:19.018 -07 000000415 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:24:19.028 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:19.028 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:19.048 -07 000000476 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:19.048 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:19.048 -07 000000476 INF: Y Motor: Moved to 61.5640 after 1444 ms (table move)
17-03-17 21:24:19.048 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139648 mm (DAC = 30506)
17-03-17 21:24:19.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.058 -07 000000626 INF: FPGA: Recv ZSGSRD 31037
17-03-17 21:24:19.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:24:19.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.058 -07 000000415 INF: FPGA: Recv ZSGSRD 31021
17-03-17 21:24:19.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:19.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.068 -07 000000429 INF: FPGA: Recv ZSGSRD 31034
17-03-17 21:24:19.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.078 -07 000000501 INF: FPGA: Recv ZSGSRD 31033
17-03-17 21:24:19.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.088 -07 000000476 INF: FPGA: Recv ZSGSRD 31041
17-03-17 21:24:19.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.098 -07 000000512 INF: FPGA: Recv ZSGSRD 31029
17-03-17 21:24:19.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.108 -07 000000480 INF: FPGA: Recv ZSGSRD 31022
17-03-17 21:24:19.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.118 -07 000000512 INF: FPGA: Recv ZSGSRD 31024
17-03-17 21:24:19.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.128 -07 000000431 INF: FPGA: Recv ZSGSRD 31026
17-03-17 21:24:19.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:19.138 -07 000000438 INF: FPGA: Recv ZSGSRD 31028
17-03-17 21:24:19.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.148 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:19.148 -07 000000431 INF: FPGA: Recv ZPIEZORD 27056
17-03-17 21:24:19.158 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:19.158 -07 000000012 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.655 V. Piezo Error = -8.8 V.
17-03-17 21:24:19.158 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31030 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31028 (-138.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 31021 (-138.8 uncal um), Max = 31041 (-138.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:24:19.158 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31030, posNoise = 11, negNoise = 9
17-03-17 21:24:19.158 -07 000000012 INF: Z Motor: After move to -0.139648, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:19.158 -07 000000012 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:24:19.158 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:19.208 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:24:19.208 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:19.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:19.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:19.208 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:19.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:19.208 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:19.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:19.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:19.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:19.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:19.218 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:19.218 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:24:19.218 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:24:19.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:19.268 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:19.468 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:19.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:19.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:19.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:19.508 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:19.508 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:19.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:24:19.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:24:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:19.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:19.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:24:19.608 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:19.608 -07 000000627 INF: Autofocus start
17-03-17 21:24:19.608 -07 000000627 INF: MeasureProfile start
17-03-17 21:24:19.608 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:19.618 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:19.618 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:19.628 -07 000000627 INF: MeasureProfile done
17-03-17 21:24:19.628 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:24:19.628 -07 000000627 INF: Autofocus finished
17-03-17 21:24:19.818 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.027603,
17-03-17 21:24:19.818 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:19.818 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-17 21:24:19.828 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139666654769978. ----------
17-03-17 21:24:19.828 -07 000000610 INF: Cycle	50	Tile	3	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:19.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29013, sync = True, waitForSettling = True)
17-03-17 21:24:19.828 -07 000000610 INF: Z Motor: Moving to -0.132813 mm, started at -0.139667 mm, distance = 6.85 um
17-03-17 21:24:19.848 -07 000000610 INF: FPGA: Xmit ZDACW 29013\n [Z Motor]
17-03-17 21:24:19.848 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:24:19.858 -07 000000610 INF: FPGA: 'ZDACW 29013' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:24:19.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:19.868 -07 000000458 INF: FPGA: Recv ZDACR 29013
17-03-17 21:24:19.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:19.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.028 -07 000000429 INF: FPGA: Recv ZSGSRD 29969
17-03-17 21:24:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.038 -07 000000458 INF: FPGA: Recv ZSGSRD 29968
17-03-17 21:24:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.048 -07 000000626 INF: FPGA: Recv ZSGSRD 29962
17-03-17 21:24:20.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.058 -07 000000608 INF: FPGA: Recv ZSGSRD 29964
17-03-17 21:24:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29963
17-03-17 21:24:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.078 -07 000000512 INF: FPGA: Recv ZSGSRD 29964
17-03-17 21:24:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.088 -07 000000382 INF: FPGA: Recv ZSGSRD 29962
17-03-17 21:24:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29965
17-03-17 21:24:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.108 -07 000000429 INF: FPGA: Recv ZSGSRD 29960
17-03-17 21:24:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:20.118 -07 000000431 INF: FPGA: Recv ZSGSRD 29960
17-03-17 21:24:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:20.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:20.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 25679
17-03-17 21:24:20.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:20.148 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.4 V.
17-03-17 21:24:20.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29964 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29964 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29960 (-132.0 uncal um), Max = 29969 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:20.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29964, posNoise = 5, negNoise = 4
17-03-17 21:24:20.148 -07 000000610 INF: Z Motor: After move to -0.132813, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:20.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 314 ms)
17-03-17 21:24:20.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:20.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:20.148 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:20.148 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:20.148 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:20.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:20.148 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:20.148 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:20.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:20.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:20.148 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:20.148 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:20.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:20.148 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:20.158 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:20.158 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:20.158 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:24:20.168 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:20.168 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:24:20.168 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:24:20.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29190 150\n [Camera]
17-03-17 21:24:20.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:20.818 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:20.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:20.818 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:20.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:20.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:20.818 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:20.818 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:20.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:20.828 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:20.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:21.008 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29190 816
17-03-17 21:24:21.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:21.218 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:24:21.218 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:24:21.218 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:21.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:24:21.218 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:24:21.218 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:21.218 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:21.218 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:24:21.228 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:21.228 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:24:21.368 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:21.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:21.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:21.368 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:21.368 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:21.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:24:21.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:21.368 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:21.368 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:21.368 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:24:21.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:21.558 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:21.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29190 150' command took 4 ms to send, 1363 ms to get response, and 1386 ms overall
17-03-17 21:24:21.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:21.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.13281844462686. ------
17-03-17 21:24:21.568 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:21.568 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13921 mm
17-03-17 21:24:21.568 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:21.568 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:21.568 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30410, sync = True, waitForSettling = False)
17-03-17 21:24:21.568 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:24:21.568 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:24:21.568 -07 000000627 INF: Z Motor: Moving to -0.139208 mm, started at -0.132818 mm, distance = -6.39 um
17-03-17 21:24:21.578 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:21.578 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:21.588 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:21.588 -07 000000458 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:24:21.598 -07 000000627 INF: FPGA: Xmit ZDACW 30410\n [Z Motor]
17-03-17 21:24:21.598 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:24:21.598 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:21.598 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:21.598 -07 000000480 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:24:21.598 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:24:21.608 -07 000000627 INF: FPGA: 'ZDACW 30410' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 21:24:21.608 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:21.608 -07 000000576 INF: FPGA: Recv ZDACR 30410
17-03-17 21:24:21.618 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:21.618 -07 000000627 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:24:21.618 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:21.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:24:21.758 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:24:21.758 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:21.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:24:21.768 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:24:21.768 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:21.768 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:24:21.768 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:21.768 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:24:21.778 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:24:21.778 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:21.778 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:21.878 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:21.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:21.988 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:24:21.988 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:24:22.028 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:22.028 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:24:22.038 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:22.038 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:22.038 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:24:22.038 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 21:24:22.988 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:22.988 -07 000000476 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:24:22.998 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:22.998 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:23.018 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:23.018 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:23.018 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1448 ms (table move)
17-03-17 21:24:23.018 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139208 mm (DAC = 30410)
17-03-17 21:24:23.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.018 -07 000000431 INF: FPGA: Recv ZSGSRD 30956
17-03-17 21:24:23.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:24:23.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.028 -07 000000576 INF: FPGA: Recv ZSGSRD 30962
17-03-17 21:24:23.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.038 -07 000000512 INF: FPGA: Recv ZSGSRD 30961
17-03-17 21:24:23.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.048 -07 000000547 INF: FPGA: Recv ZSGSRD 30966
17-03-17 21:24:23.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.058 -07 000000626 INF: FPGA: Recv ZSGSRD 30960
17-03-17 21:24:23.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.068 -07 000000431 INF: FPGA: Recv ZSGSRD 30956
17-03-17 21:24:23.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30955
17-03-17 21:24:23.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.088 -07 000000458 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:24:23.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.098 -07 000000424 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:24:23.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.108 -07 000000382 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:24:23.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.118 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:23.118 -07 000000476 INF: FPGA: Recv ZPIEZORD 26952
17-03-17 21:24:23.128 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.128 -07 000000415 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 21:24:23.128 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30959 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30955 (-138.4 uncal um), Max = 30966 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:23.128 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30959, posNoise = 7, negNoise = 4
17-03-17 21:24:23.128 -07 000000415 INF: Z Motor: After move to -0.139208, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:23.128 -07 000000415 INF: Z Motor: Settle wait time = 1452 ms, measure time = 104 ms (allowed 150 ms), total time = 1556 ms
17-03-17 21:24:23.128 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:23.178 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:24:23.178 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:23.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:23.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:23.178 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:23.178 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:23.178 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:23.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:23.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:23.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:23.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:23.188 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:23.198 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:24:23.198 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:24:23.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:23.248 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:23.448 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:23.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:23.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:23.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:24:23.488 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:23.488 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:23.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:24:23.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:24:23.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:23.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:23.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:24:23.588 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:23.588 -07 000000458 INF: Autofocus start
17-03-17 21:24:23.588 -07 000000458 INF: MeasureProfile start
17-03-17 21:24:23.588 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:23.598 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:23.598 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:23.598 -07 000000458 INF: MeasureProfile done
17-03-17 21:24:23.598 -07 000000458 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:24:23.598 -07 000000458 INF: Autofocus finished
17-03-17 21:24:23.798 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:23.798 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:24:23.798 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139210535707912. ----------
17-03-17 21:24:23.808 -07 000000610 INF: Cycle	50	Tile	4	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:23.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = True)
17-03-17 21:24:23.808 -07 000000610 INF: Z Motor: Moving to -0.132529 mm, started at -0.139211 mm, distance = 6.68 um
17-03-17 21:24:23.808 -07 000000610 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-17 21:24:23.808 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:24:23.818 -07 000000610 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:23.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:23.818 -07 000000424 INF: FPGA: Recv ZDACR 28951
17-03-17 21:24:23.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:23.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.978 -07 000000512 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:24:23.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.988 -07 000000012 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:24:23.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:23.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:23.998 -07 000000458 INF: FPGA: Recv ZSGSRD 29917
17-03-17 21:24:24.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.008 -07 000000431 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:24:24.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:24:24.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:24:24.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.038 -07 000000438 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:24:24.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.048 -07 000000424 INF: FPGA: Recv ZSGSRD 29924
17-03-17 21:24:24.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:24:24.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:24.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29915
17-03-17 21:24:24.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:24.078 -07 000000476 INF: FPGA: Recv ZPIEZORD 25625
17-03-17 21:24:24.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:24.088 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -9.4 V.
17-03-17 21:24:24.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29920 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29920 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29915 (-131.7 uncal um), Max = 29924 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:24:24.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29920, posNoise = 4, negNoise = 5
17-03-17 21:24:24.088 -07 000000610 INF: Z Motor: After move to -0.132529, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:24.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:24.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:24.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:24.088 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:24.088 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:24.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:24.088 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:24.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:24.088 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:24.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:24.088 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:24.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:24.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:24.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:24.098 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:24.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:24:24.098 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:24.098 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:24.098 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:24:24.108 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:24.108 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:24:24.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29128 150\n [Camera]
17-03-17 21:24:24.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:24.738 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:24.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:24.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:24.738 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:24.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:24:24.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:24.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:24.738 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:24.738 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:24.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:24:24.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29128 816
17-03-17 21:24:25.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:25.118 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:24:25.118 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:24:25.118 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:25.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:24:25.118 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:24:25.118 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:25.118 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:25.118 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:25.118 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:24:25.128 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:24:25.208 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.003063,
17-03-17 21:24:25.288 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:25.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:25.288 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:25.288 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:25.288 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:24:25.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:25.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:25.288 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:25.288 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:25.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:24:25.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:25.478 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:25.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29128 150' command took 4 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:24:25.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:25.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132535779292623. ------
17-03-17 21:24:25.598 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13932 mm
17-03-17 21:24:25.598 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:25.598 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:24:25.598 -07 000000547 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:24:25.598 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30433, sync = True, waitForSettling = False)
17-03-17 21:24:25.598 -07 000000431 INF: Z Motor: Moving to -0.139313 mm, started at -0.132536 mm, distance = -6.78 um
17-03-17 21:24:25.608 -07 000000431 INF: FPGA: Xmit ZDACW 30433\n [Z Motor]
17-03-17 21:24:25.608 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:24:25.618 -07 000000431 INF: FPGA: 'ZDACW 30433' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:24:25.618 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:25.618 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:25.628 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:25.628 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:24:25.628 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 21:24:25.638 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:24:25.638 -07 000000547 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:25.638 -07 000000547 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:25.638 -07 000000547 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:24:25.648 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:25.648 -07 000000459 INF: FPGA: Recv ZDACR 30433
17-03-17 21:24:25.658 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:24:25.658 -07 000000431 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:24:25.658 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:25.668 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:25.678 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:24:25.678 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:24:25.678 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:25.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:24:25.678 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:24:25.678 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:25.678 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:25.688 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:24:25.688 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:24:25.688 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:24:25.858 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:25.858 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 21:24:26.038 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:24:26.038 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 21:24:26.078 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:26.078 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:24:26.088 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:26.088 -07 000000547 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:26.088 -07 000000547 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:24:26.088 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.837 mm, average velocity = 2.072 mm/sec
17-03-17 21:24:26.878 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:26.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:27.038 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:27.038 -07 000000012 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:24:27.048 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:27.048 -07 000000547 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:27.068 -07 000000547 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:27.068 -07 000000547 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:24:27.068 -07 000000547 INF: Y Motor: Moved to 63.2246 after 1466 ms (table move)
17-03-17 21:24:27.068 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139313 mm (DAC = 30433)
17-03-17 21:24:27.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30984
17-03-17 21:24:27.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:24:27.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.078 -07 000000501 INF: FPGA: Recv ZSGSRD 30969
17-03-17 21:24:27.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30978
17-03-17 21:24:27.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.098 -07 000000429 INF: FPGA: Recv ZSGSRD 30985
17-03-17 21:24:27.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30979
17-03-17 21:24:27.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.118 -07 000000458 INF: FPGA: Recv ZSGSRD 30983
17-03-17 21:24:27.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.128 -07 000000476 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:24:27.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.138 -07 000000415 INF: FPGA: Recv ZSGSRD 30979
17-03-17 21:24:27.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.148 -07 000000475 INF: FPGA: Recv ZSGSRD 30969
17-03-17 21:24:27.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:27.158 -07 000000438 INF: FPGA: Recv ZSGSRD 30972
17-03-17 21:24:27.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.168 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:27.168 -07 000000475 INF: FPGA: Recv ZPIEZORD 27036
17-03-17 21:24:27.178 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.178 -07 000000512 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -8.7 V.
17-03-17 21:24:27.178 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30977 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30978 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30969 (-138.5 uncal um), Max = 30985 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:24:27.178 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30977, posNoise = 8, negNoise = 8
17-03-17 21:24:27.178 -07 000000512 INF: Z Motor: After move to -0.139313, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:27.178 -07 000000512 INF: Z Motor: Settle wait time = 1469 ms, measure time = 103 ms (allowed 150 ms), total time = 1572 ms
17-03-17 21:24:27.178 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:27.228 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 21:24:27.228 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:27.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:27.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:27.228 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:27.228 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:27.228 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:27.228 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:27.238 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:27.238 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:27.238 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:27.238 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:27.248 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:24:27.248 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:24:27.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:27.288 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:27.488 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:27.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:27.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:27.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:27.528 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:27.528 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:27.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:24:27.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:24:27.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:27.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:27.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:24:27.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:27.628 -07 000000382 INF: Autofocus start
17-03-17 21:24:27.628 -07 000000382 INF: MeasureProfile start
17-03-17 21:24:27.628 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:27.638 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:27.638 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:27.648 -07 000000382 INF: MeasureProfile done
17-03-17 21:24:27.648 -07 000000382 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 21:24:27.648 -07 000000382 INF: Autofocus finished
17-03-17 21:24:27.838 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:27.838 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:27.838 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139326171526464. ----------
17-03-17 21:24:27.838 -07 000000610 INF: Cycle	50	Tile	5	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:27.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28940, sync = True, waitForSettling = True)
17-03-17 21:24:27.848 -07 000000610 INF: Z Motor: Moving to -0.132479 mm, started at -0.139326 mm, distance = 6.85 um
17-03-17 21:24:27.848 -07 000000610 INF: FPGA: Xmit ZDACW 28940\n [Z Motor]
17-03-17 21:24:27.848 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:24:27.858 -07 000000610 INF: FPGA: 'ZDACW 28940' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:27.858 -07 000000627 INF: FPGA: Recv ZDACR 28940
17-03-17 21:24:27.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:27.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:24:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.028 -07 000000476 INF: FPGA: Recv ZSGSRD 29925
17-03-17 21:24:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.038 -07 000000012 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:24:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.048 -07 000000415 INF: FPGA: Recv ZSGSRD 29903
17-03-17 21:24:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.058 -07 000000608 INF: FPGA: Recv ZSGSRD 29913
17-03-17 21:24:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.068 -07 000000415 INF: FPGA: Recv ZSGSRD 29924
17-03-17 21:24:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.078 -07 000000476 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:24:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.088 -07 000000608 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:24:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.098 -07 000000501 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:24:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:28.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:24:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:28.118 -07 000000382 INF: FPGA: Recv ZPIEZORD 25642
17-03-17 21:24:28.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:28.128 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.4 V.
17-03-17 21:24:28.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29912 (-131.7 uncal um), StdDev = 8 (0.1 uncal um), Range = 22 (0.1 uncal um), Min = 29903 (-131.6 uncal um), Max = 29925 (-131.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:24:28.128 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 11, negNoise = 11
17-03-17 21:24:28.128 -07 000000610 INF: Z Motor: After move to -0.132479, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:28.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:28.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:28.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:28.128 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:28.128 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:28.128 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:28.128 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:28.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:28.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:28.128 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:28.128 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:28.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:28.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:28.128 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:28.128 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:28.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:28.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:28.138 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:28.138 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:24:28.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:28.148 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:24:28.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29117 150\n [Camera]
17-03-17 21:24:28.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:28.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:28.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:28.778 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:28.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:28.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:28.788 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:28.788 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:28.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:28.788 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:28.788 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:28.968 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29117 816
17-03-17 21:24:29.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:29.168 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:24:29.168 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:24:29.168 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:29.168 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:29.168 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:24:29.168 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:24:29.168 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:29.178 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:29.178 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:24:29.178 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:24:29.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:29.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:29.328 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:29.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:29.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:29.338 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:29.338 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:29.338 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:24:29.338 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:29.338 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:24:29.518 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:29.518 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:29.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29117 150' command took 2 ms to send, 1368 ms to get response, and 1373 ms overall
17-03-17 21:24:29.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:29.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132497234019772. ------
17-03-17 21:24:29.638 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:29.648 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13897 mm
17-03-17 21:24:29.648 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:29.648 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:24:29.648 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 21:24:29.648 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30357, sync = True, waitForSettling = False)
17-03-17 21:24:29.648 -07 000000501 INF: Z Motor: Moving to -0.138965 mm, started at -0.132497 mm, distance = -6.47 um
17-03-17 21:24:29.648 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:29.658 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:29.658 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:29.658 -07 000000382 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:24:29.668 -07 000000501 INF: FPGA: Xmit ZDACW 30357\n [Z Motor]
17-03-17 21:24:29.668 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:24:29.668 -07 000000569 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:29.668 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:29.668 -07 000000569 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:24:29.668 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:24:29.678 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:29.678 -07 000000501 INF: FPGA: 'ZDACW 30357' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:24:29.688 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:29.698 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:29.698 -07 000000438 INF: FPGA: Recv ZDACR 30357
17-03-17 21:24:29.708 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:24:29.708 -07 000000501 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 21:24:29.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:24:29.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:24:29.738 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:24:29.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:29.738 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:24:29.738 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:29.738 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:29.738 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:29.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:24:29.748 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:24:29.878 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:29.878 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:24:30.058 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:24:30.058 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:24:30.098 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:30.108 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:24:30.108 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:24:30.108 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:30.108 -07 000000569 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 21:24:30.108 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 21:24:30.568 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.997626,
17-03-17 21:24:31.058 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:31.058 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:24:31.068 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.068 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:31.088 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:31.088 -07 000000569 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:31.088 -07 000000569 INF: Y Motor: Moved to 64.0571 after 1439 ms (table move)
17-03-17 21:24:31.088 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138965 mm (DAC = 30357)
17-03-17 21:24:31.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.088 -07 000000429 INF: FPGA: Recv ZSGSRD 30924
17-03-17 21:24:31.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:31.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30917
17-03-17 21:24:31.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.108 -07 000000458 INF: FPGA: Recv ZSGSRD 30923
17-03-17 21:24:31.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.118 -07 000000627 INF: FPGA: Recv ZSGSRD 30927
17-03-17 21:24:31.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.128 -07 000000569 INF: FPGA: Recv ZSGSRD 30923
17-03-17 21:24:31.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.138 -07 000000476 INF: FPGA: Recv ZSGSRD 30925
17-03-17 21:24:31.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30917
17-03-17 21:24:31.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30924
17-03-17 21:24:31.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.168 -07 000000547 INF: FPGA: Recv ZSGSRD 30918
17-03-17 21:24:31.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:31.178 -07 000000475 INF: FPGA: Recv ZSGSRD 30921
17-03-17 21:24:31.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.188 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:31.188 -07 000000424 INF: FPGA: Recv ZPIEZORD 26953
17-03-17 21:24:31.198 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.198 -07 000000431 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.7 V.
17-03-17 21:24:31.198 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30923 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30917 (-138.1 uncal um), Max = 30927 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:24:31.198 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 5, negNoise = 5
17-03-17 21:24:31.198 -07 000000431 INF: Z Motor: After move to -0.138965, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:31.198 -07 000000431 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:24:31.198 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:31.248 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:24:31.248 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:31.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:31.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:31.248 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:31.248 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:31.248 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:31.248 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:31.248 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:31.248 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:31.258 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:31.258 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:31.268 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:24:31.268 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:24:31.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:31.318 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:31.518 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:31.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:31.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:31.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:31.558 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:31.558 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:31.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 21:24:31.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:24:31.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:31.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:31.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:24:31.658 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:31.658 -07 000000415 INF: Autofocus start
17-03-17 21:24:31.658 -07 000000415 INF: MeasureProfile start
17-03-17 21:24:31.658 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:31.668 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:31.668 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:31.668 -07 000000415 INF: MeasureProfile done
17-03-17 21:24:31.668 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:24:31.668 -07 000000415 INF: Autofocus finished
17-03-17 21:24:31.868 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:31.868 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:31.868 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138972839858667. ----------
17-03-17 21:24:31.868 -07 000000610 INF: Cycle	50	Tile	6	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:31.878 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:31.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:31.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28852, sync = True, waitForSettling = True)
17-03-17 21:24:31.878 -07 000000610 INF: Z Motor: Moving to -0.132076 mm, started at -0.138973 mm, distance = 6.90 um
17-03-17 21:24:31.878 -07 000000610 INF: FPGA: Xmit ZDACW 28852\n [Z Motor]
17-03-17 21:24:31.878 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:24:31.888 -07 000000610 INF: FPGA: 'ZDACW 28852' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:31.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:31.888 -07 000000547 INF: FPGA: Recv ZDACR 28852
17-03-17 21:24:31.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:31.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.048 -07 000000475 INF: FPGA: Recv ZSGSRD 29849
17-03-17 21:24:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.058 -07 000000012 INF: FPGA: Recv ZSGSRD 29846
17-03-17 21:24:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.068 -07 000000415 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:24:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.078 -07 000000424 INF: FPGA: Recv ZSGSRD 29848
17-03-17 21:24:32.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.088 -07 000000608 INF: FPGA: Recv ZSGSRD 29846
17-03-17 21:24:32.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.098 -07 000000438 INF: FPGA: Recv ZSGSRD 29855
17-03-17 21:24:32.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.108 -07 000000012 INF: FPGA: Recv ZSGSRD 29854
17-03-17 21:24:32.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.118 -07 000000382 INF: FPGA: Recv ZSGSRD 29845
17-03-17 21:24:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.128 -07 000000480 INF: FPGA: Recv ZSGSRD 29846
17-03-17 21:24:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:32.138 -07 000000608 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:24:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:32.148 -07 000000475 INF: FPGA: Recv ZPIEZORD 25537
17-03-17 21:24:32.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:32.158 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.5 V.
17-03-17 21:24:32.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29849 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29845 (-131.3 uncal um), Max = 29855 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:32.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29849, posNoise = 6, negNoise = 4
17-03-17 21:24:32.158 -07 000000610 INF: Z Motor: After move to -0.132076, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:32.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:24:32.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:32.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:32.158 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:32.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:32.158 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:32.158 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:32.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:32.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:32.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:32.158 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:32.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:24:32.158 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:32.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:32.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:32.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:32.168 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:32.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:32.178 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:24:32.178 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:32.178 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:24:32.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 29029 150\n [Camera]
17-03-17 21:24:32.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:32.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:24:32.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:24:32.808 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:32.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:24:32.818 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:32.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:32.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:24:32.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:32.818 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:32.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:32.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29029 816
17-03-17 21:24:33.148 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:33.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:24:33.188 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:24:33.188 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:33.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:24:33.188 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 21:24:33.188 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:33.188 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:33.188 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:24:33.188 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:33.198 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:24:33.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:33.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:33.358 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:33.358 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:33.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:33.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:24:33.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:33.358 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:33.358 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:33.358 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:24:33.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:33.548 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:33.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 29029 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:24:33.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:33.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132079660230558. ------
17-03-17 21:24:33.558 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13868 mm
17-03-17 21:24:33.558 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:33.558 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:33.558 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:24:33.558 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:24:33.558 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30295, sync = True, waitForSettling = False)
17-03-17 21:24:33.558 -07 000000459 INF: Z Motor: Moving to -0.138682 mm, started at -0.132080 mm, distance = -6.60 um
17-03-17 21:24:33.558 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:33.568 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:33.568 -07 000000459 INF: FPGA: Xmit ZDACW 30295\n [Z Motor]
17-03-17 21:24:33.568 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:24:33.578 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:33.578 -07 000000459 INF: FPGA: 'ZDACW 30295' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:24:33.578 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:24:33.588 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:24:33.588 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:33.588 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:33.588 -07 000000382 INF: Y Motor: Moving 1337 steps-11
17-03-17 21:24:33.588 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:33.598 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:33.598 -07 000000626 INF: FPGA: Recv ZDACR 30295
17-03-17 21:24:33.608 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:33.608 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:24:33.608 -07 000000459 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:24:33.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:24:33.758 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:24:33.758 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:33.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:24:33.758 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:24:33.758 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:33.768 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:24:33.768 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:33.768 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:24:33.768 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:24:33.788 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:33.788 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:24:33.978 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:24:33.978 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:24:34.018 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:34.018 -07 000000424 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:24:34.028 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:34.028 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:34.028 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:24:34.028 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 21:24:34.978 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:34.978 -07 000000424 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:24:34.988 -07 000000382 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:34.988 -07 000000382 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:35.008 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:35.008 -07 000000382 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:24:35.008 -07 000000382 INF: Y Motor: Moved to 64.8794 after 1448 ms (table move)
17-03-17 21:24:35.008 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138682 mm (DAC = 30295)
17-03-17 21:24:35.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.018 -07 000000512 INF: FPGA: Recv ZSGSRD 30881
17-03-17 21:24:35.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:35.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.018 -07 000000608 INF: FPGA: Recv ZSGSRD 30875
17-03-17 21:24:35.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30874
17-03-17 21:24:35.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30875
17-03-17 21:24:35.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.048 -07 000000458 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:24:35.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:24:35.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.068 -07 000000438 INF: FPGA: Recv ZSGSRD 30875
17-03-17 21:24:35.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30880
17-03-17 21:24:35.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30874
17-03-17 21:24:35.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.098 -07 000000608 INF: FPGA: Recv ZSGSRD 30877
17-03-17 21:24:35.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.108 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:35.108 -07 000000501 INF: FPGA: Recv ZPIEZORD 26932
17-03-17 21:24:35.118 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.118 -07 000000012 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -8.7 V.
17-03-17 21:24:35.118 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30878 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30876 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30874 (-137.9 uncal um), Max = 30885 (-137.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:35.118 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30878, posNoise = 7, negNoise = 4
17-03-17 21:24:35.118 -07 000000012 INF: Z Motor: After move to -0.138682, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:35.118 -07 000000012 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-17 21:24:35.118 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:35.168 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 21:24:35.168 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:35.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:35.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:35.168 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:35.168 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:35.168 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:35.168 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:35.178 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:35.178 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:35.178 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:35.178 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:35.178 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:24:35.178 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:24:35.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:35.228 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:35.428 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:35.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:35.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:35.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:24:35.468 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:35.468 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:35.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:24:35.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:24:35.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:35.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:35.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:24:35.568 -07 000000382 INF: Autofocus start
17-03-17 21:24:35.568 -07 000000382 INF: MeasureProfile start
17-03-17 21:24:35.568 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:35.578 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:35.578 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:24:35.578 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:35.588 -07 000000382 INF: MeasureProfile done
17-03-17 21:24:35.588 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:24:35.588 -07 000000382 INF: Autofocus finished
17-03-17 21:24:35.778 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:35.778 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:35.778 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.13869017452443. ----------
17-03-17 21:24:35.778 -07 000000610 INF: Cycle	50	Tile	7	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:35.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = True)
17-03-17 21:24:35.788 -07 000000610 INF: Z Motor: Moving to -0.131792 mm, started at -0.138690 mm, distance = 6.90 um
17-03-17 21:24:35.788 -07 000000610 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-17 21:24:35.788 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:24:35.798 -07 000000610 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:35.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:35.798 -07 000000424 INF: FPGA: Recv ZDACR 28790
17-03-17 21:24:35.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:35.928 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.98264,
17-03-17 21:24:35.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29800
17-03-17 21:24:35.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29806
17-03-17 21:24:35.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:35.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.988 -07 000000382 INF: FPGA: Recv ZSGSRD 29806
17-03-17 21:24:35.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:35.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:35.998 -07 000000576 INF: FPGA: Recv ZSGSRD 29805
17-03-17 21:24:36.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:36.008 -07 000000415 INF: FPGA: Recv ZSGSRD 29808
17-03-17 21:24:36.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:36.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29803
17-03-17 21:24:36.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:36.028 -07 000000429 INF: FPGA: Recv ZSGSRD 29802
17-03-17 21:24:36.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:36.038 -07 000000475 INF: FPGA: Recv ZSGSRD 29807
17-03-17 21:24:36.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:36.048 -07 000000480 INF: FPGA: Recv ZSGSRD 29810
17-03-17 21:24:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:36.058 -07 000000547 INF: FPGA: Recv ZSGSRD 29808
17-03-17 21:24:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:36.068 -07 000000382 INF: FPGA: Recv ZPIEZORD 25552
17-03-17 21:24:36.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:36.078 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.3 V.
17-03-17 21:24:36.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29800 (-131.0 uncal um), Max = 29810 (-131.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:24:36.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 4, negNoise = 6
17-03-17 21:24:36.078 -07 000000610 INF: Z Motor: After move to -0.131792, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:36.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:24:36.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:36.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:36.078 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:36.078 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:36.078 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:36.078 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:36.078 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:36.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:36.078 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:36.078 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:36.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:36.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:36.088 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:24:36.088 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:36.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:36.088 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:36.098 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:24:36.098 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:24:36.098 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:24:36.098 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:24:36.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28966 150\n [Camera]
17-03-17 21:24:36.298 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:36.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:36.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:36.738 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:36.738 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:36.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:24:36.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:36.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:36.738 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:36.738 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:36.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:24:36.878 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:36.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:36.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28966 816
17-03-17 21:24:37.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:37.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:24:37.128 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:24:37.128 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:37.128 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:24:37.128 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:24:37.128 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:37.138 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:37.138 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:37.138 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:24:37.138 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:24:37.278 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:37.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:37.278 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:37.288 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:37.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:24:37.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:37.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:37.288 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:37.288 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:37.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:24:37.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:37.478 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:37.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28966 150' command took 2 ms to send, 1370 ms to get response, and 1376 ms overall
17-03-17 21:24:37.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:37.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131803419108462. ------
17-03-17 21:24:37.588 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:37.588 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13835 mm
17-03-17 21:24:37.588 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:37.588 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:37.598 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 110 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 21:24:37.598 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30223, sync = True, waitForSettling = False)
17-03-17 21:24:37.598 -07 000000608 INF: Z Motor: Moving to -0.138352 mm, started at -0.131803 mm, distance = -6.55 um
17-03-17 21:24:37.598 -07 000000608 INF: FPGA: Xmit ZDACW 30223\n [Z Motor]
17-03-17 21:24:37.598 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:24:37.598 -07 000000458 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 21:24:37.598 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:24:37.608 -07 000000608 INF: FPGA: 'ZDACW 30223' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:37.608 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:37.608 -07 000000475 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:24:37.618 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:24:37.618 -07 000000458 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:37.618 -07 000000458 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:37.618 -07 000000458 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:24:37.618 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:37.628 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:37.628 -07 000000626 INF: FPGA: Recv ZDACR 30223
17-03-17 21:24:37.638 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:37.638 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:24:37.638 -07 000000608 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:24:37.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:24:37.678 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:24:37.678 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:37.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:24:37.678 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:24:37.678 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:37.688 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:37.688 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:24:37.688 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:24:37.688 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:24:37.818 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:37.818 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:24:38.018 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:24:38.018 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 21:24:38.048 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:38.058 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:24:38.058 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:24:38.058 -07 000000458 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:38.058 -07 000000458 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:24:38.058 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.108 mm/sec
17-03-17 21:24:39.008 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:39.008 -07 000000608 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:24:39.018 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:39.018 -07 000000458 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:39.038 -07 000000458 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:39.038 -07 000000458 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:39.038 -07 000000458 INF: Y Motor: Moved to 65.7144 after 1443 ms (table move)
17-03-17 21:24:39.038 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138352 mm (DAC = 30223)
17-03-17 21:24:39.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.048 -07 000000627 INF: FPGA: Recv ZSGSRD 30834
17-03-17 21:24:39.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:24:39.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.048 -07 000000547 INF: FPGA: Recv ZSGSRD 30827
17-03-17 21:24:39.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:39.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.058 -07 000000459 INF: FPGA: Recv ZSGSRD 30831
17-03-17 21:24:39.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30827
17-03-17 21:24:39.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.078 -07 000000458 INF: FPGA: Recv ZSGSRD 30826
17-03-17 21:24:39.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.088 -07 000000512 INF: FPGA: Recv ZSGSRD 30829
17-03-17 21:24:39.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.098 -07 000000547 INF: FPGA: Recv ZSGSRD 30828
17-03-17 21:24:39.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.108 -07 000000569 INF: FPGA: Recv ZSGSRD 30825
17-03-17 21:24:39.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.118 -07 000000476 INF: FPGA: Recv ZSGSRD 30823
17-03-17 21:24:39.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.128 -07 000000438 INF: FPGA: Recv ZSGSRD 30830
17-03-17 21:24:39.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.138 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:39.138 -07 000000576 INF: FPGA: Recv ZPIEZORD 26874
17-03-17 21:24:39.148 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.148 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.7 V.
17-03-17 21:24:39.148 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30828 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30828 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30834 (-137.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:24:39.148 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30828, posNoise = 6, negNoise = 5
17-03-17 21:24:39.148 -07 000000431 INF: Z Motor: After move to -0.138352, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:39.148 -07 000000431 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:24:39.148 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:39.198 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:24:39.198 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:39.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:39.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:39.198 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:39.198 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:39.198 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:39.198 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:39.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:39.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:39.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:39.208 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:39.218 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:24:39.218 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:24:39.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:39.268 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:39.468 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:39.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:39.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:39.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:39.508 -07 000000475 INF: FPGA: Recv @CAMSNAP 283
17-03-17 21:24:39.508 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:39.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 21:24:39.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:24:39.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:39.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:24:39.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:24:39.608 -07 000000501 INF: Autofocus start
17-03-17 21:24:39.608 -07 000000501 INF: MeasureProfile start
17-03-17 21:24:39.608 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:39.608 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:39.618 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:39.618 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:39.628 -07 000000501 INF: MeasureProfile done
17-03-17 21:24:39.628 -07 000000501 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:24:39.628 -07 000000501 INF: Autofocus finished
17-03-17 21:24:39.818 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:39.818 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:24:39.818 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138368963917342. ----------
17-03-17 21:24:39.828 -07 000000610 INF: Cycle	50	Tile	8	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:39.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-17 21:24:39.828 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138369 mm, distance = 6.70 um
17-03-17 21:24:39.828 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-17 21:24:39.828 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:24:39.838 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:39.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:39.838 -07 000000431 INF: FPGA: Recv ZDACR 28764
17-03-17 21:24:39.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:39.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:39.998 -07 000000382 INF: FPGA: Recv ZSGSRD 29783
17-03-17 21:24:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.008 -07 000000458 INF: FPGA: Recv ZSGSRD 29786
17-03-17 21:24:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.018 -07 000000476 INF: FPGA: Recv ZSGSRD 29792
17-03-17 21:24:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.028 -07 000000547 INF: FPGA: Recv ZSGSRD 29780
17-03-17 21:24:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.038 -07 000000569 INF: FPGA: Recv ZSGSRD 29784
17-03-17 21:24:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.048 -07 000000608 INF: FPGA: Recv ZSGSRD 29790
17-03-17 21:24:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29786
17-03-17 21:24:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.068 -07 000000512 INF: FPGA: Recv ZSGSRD 29788
17-03-17 21:24:40.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29782
17-03-17 21:24:40.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:40.088 -07 000000431 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:24:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:40.098 -07 000000576 INF: FPGA: Recv ZPIEZORD 25534
17-03-17 21:24:40.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:40.108 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.3 V.
17-03-17 21:24:40.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29792 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:24:40.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 6, negNoise = 6
17-03-17 21:24:40.108 -07 000000610 INF: Z Motor: After move to -0.131673, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:40.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:40.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:40.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:40.108 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:40.108 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:40.108 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:40.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:40.108 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:40.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:40.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:40.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:40.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:40.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:40.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:24:40.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:40.118 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:40.118 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:40.128 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:40.128 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:40.128 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:24:40.128 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:40.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28941 150\n [Camera]
17-03-17 21:24:40.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:40.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:40.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:40.758 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:40.758 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:40.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:40.758 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:40.768 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:40.768 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:40.768 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:40.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:40.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 816
17-03-17 21:24:41.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:41.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:24:41.138 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:24:41.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:41.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:24:41.138 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:24:41.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:41.138 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:41.138 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:24:41.148 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:41.148 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:24:41.308 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.988112,
17-03-17 21:24:41.318 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1176
17-03-17 21:24:41.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1176
17-03-17 21:24:41.318 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:41.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1176
17-03-17 21:24:41.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1176
17-03-17 21:24:41.318 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:41.318 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:41.328 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:24:41.328 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:41.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:24:41.498 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:41.498 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:41.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28941 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:24:41.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:41.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131674934865627. ------
17-03-17 21:24:41.618 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13802 mm
17-03-17 21:24:41.618 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:41.618 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:41.618 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:24:41.618 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:24:41.628 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:41.628 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:41.628 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:24:41.628 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30151, sync = True, waitForSettling = False)
17-03-17 21:24:41.628 -07 000000382 INF: Z Motor: Moving to -0.138022 mm, started at -0.131675 mm, distance = -6.35 um
17-03-17 21:24:41.628 -07 000000415 INF: FPGA: Recv YRDPOS 134584
17-03-17 21:24:41.638 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:41.638 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:41.638 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:41.638 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:41.638 -07 000000424 INF: Y Motor: Moving 1340 steps-17
17-03-17 21:24:41.648 -07 000000382 INF: FPGA: Xmit ZDACW 30151\n [Z Motor]
17-03-17 21:24:41.648 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:24:41.658 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:41.658 -07 000000382 INF: FPGA: 'ZDACW 30151' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:24:41.668 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:41.668 -07 000000458 INF: FPGA: Recv ZDACR 30151
17-03-17 21:24:41.678 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:41.678 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:24:41.718 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:24:41.718 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:24:41.718 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:41.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:24:41.718 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:24:41.718 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:41.728 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:41.728 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:24:41.728 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:41.728 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:24:41.838 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:41.838 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 21:24:41.878 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:41.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:42.028 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:24:42.028 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:24:42.068 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:42.068 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:24:42.078 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:24:42.078 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:42.078 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:24:42.078 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.133 mm/sec
17-03-17 21:24:43.028 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:43.028 -07 000000626 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:24:43.038 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:43.038 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:43.068 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:43.068 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:43.068 -07 000000424 INF: Y Motor: Moved to 66.5396 after 1444 ms (table move)
17-03-17 21:24:43.068 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138022 mm (DAC = 30151)
17-03-17 21:24:43.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30773
17-03-17 21:24:43.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:24:43.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.078 -07 000000576 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:24:43.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.088 -07 000000476 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:24:43.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30777
17-03-17 21:24:43.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.108 -07 000000431 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:24:43.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.118 -07 000000382 INF: FPGA: Recv ZSGSRD 30771
17-03-17 21:24:43.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:24:43.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.138 -07 000000476 INF: FPGA: Recv ZSGSRD 30772
17-03-17 21:24:43.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.148 -07 000000459 INF: FPGA: Recv ZSGSRD 30775
17-03-17 21:24:43.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:43.158 -07 000000512 INF: FPGA: Recv ZSGSRD 30780
17-03-17 21:24:43.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.168 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:43.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 26866
17-03-17 21:24:43.178 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.178 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.6 V.
17-03-17 21:24:43.178 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30775 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30774 (-137.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30771 (-137.2 uncal um), Max = 30780 (-137.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:43.178 -07 000000429 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30775, posNoise = 5, negNoise = 4
17-03-17 21:24:43.178 -07 000000429 INF: Z Motor: After move to -0.138022, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:43.178 -07 000000429 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:24:43.178 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:43.228 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:24:43.228 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:43.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:43.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:43.228 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:43.228 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:43.228 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:43.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:43.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:43.228 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:43.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:43.238 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:43.238 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:24:43.238 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:24:43.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:43.288 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:43.488 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:43.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:43.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:43.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:43.528 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:43.528 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:43.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:24:43.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:24:43.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:43.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:24:43.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:24:43.628 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:43.628 -07 000000476 INF: Autofocus start
17-03-17 21:24:43.628 -07 000000476 INF: MeasureProfile start
17-03-17 21:24:43.628 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:43.638 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:43.638 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:43.638 -07 000000476 INF: MeasureProfile done
17-03-17 21:24:43.638 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:24:43.638 -07 000000476 INF: Autofocus finished
17-03-17 21:24:43.838 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:43.838 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:43.838 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.138028480673828. ----------
17-03-17 21:24:43.838 -07 000000610 INF: Cycle	50	Tile	9	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:43.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28658, sync = True, waitForSettling = True)
17-03-17 21:24:43.848 -07 000000610 INF: Z Motor: Moving to -0.131188 mm, started at -0.138028 mm, distance = 6.84 um
17-03-17 21:24:43.848 -07 000000610 INF: FPGA: Xmit ZDACW 28658\n [Z Motor]
17-03-17 21:24:43.848 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:24:43.858 -07 000000610 INF: FPGA: 'ZDACW 28658' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:43.858 -07 000000608 INF: FPGA: Recv ZDACR 28658
17-03-17 21:24:43.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:43.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:44.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.018 -07 000000501 INF: FPGA: Recv ZSGSRD 29712
17-03-17 21:24:44.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:44.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.028 -07 000000459 INF: FPGA: Recv ZSGSRD 29708
17-03-17 21:24:44.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.038 -07 000000424 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:24:44.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.048 -07 000000480 INF: FPGA: Recv ZSGSRD 29702
17-03-17 21:24:44.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.058 -07 000000415 INF: FPGA: Recv ZSGSRD 29714
17-03-17 21:24:44.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.068 -07 000000608 INF: FPGA: Recv ZSGSRD 29709
17-03-17 21:24:44.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29712
17-03-17 21:24:44.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.088 -07 000000382 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:24:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29705
17-03-17 21:24:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:44.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29705
17-03-17 21:24:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:44.118 -07 000000547 INF: FPGA: Recv ZPIEZORD 25443
17-03-17 21:24:44.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:44.128 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.4 V.
17-03-17 21:24:44.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29710 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29710 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29702 (-130.4 uncal um), Max = 29718 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:24:44.128 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29710, posNoise = 8, negNoise = 8
17-03-17 21:24:44.128 -07 000000610 INF: Z Motor: After move to -0.131188, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:44.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:44.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:44.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:44.128 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:44.128 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:44.128 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:44.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:44.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:44.128 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:44.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:44.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:44.128 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:44.128 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:44.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:44.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:44.138 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:44.138 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:44.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:24:44.158 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:24:44.158 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 21:24:44.158 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 21:24:44.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28835 150\n [Camera]
17-03-17 21:24:44.358 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:44.788 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:44.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:44.788 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:44.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:44.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:44.788 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:44.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:44.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:44.798 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:44.798 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:44.978 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28835 816
17-03-17 21:24:45.128 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:45.168 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:24:45.168 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:24:45.168 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:45.168 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:24:45.178 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:24:45.178 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:45.178 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:45.178 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:45.178 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:24:45.178 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:24:45.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:45.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:45.338 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:45.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:45.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:45.338 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:45.338 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:24:45.338 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:45.338 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:45.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:24:45.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:24:45.528 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:45.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28835 150' command took 2 ms to send, 1366 ms to get response, and 1372 ms overall
17-03-17 21:24:45.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:45.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131186694742853. ------
17-03-17 21:24:45.538 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:45.538 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13792 mm
17-03-17 21:24:45.538 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:45.538 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:24:45.538 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 21:24:45.538 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30129, sync = True, waitForSettling = False)
17-03-17 21:24:45.538 -07 000000626 INF: Z Motor: Moving to -0.137922 mm, started at -0.131187 mm, distance = -6.74 um
17-03-17 21:24:45.538 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:45.548 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:45.548 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:45.548 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:24:45.558 -07 000000626 INF: FPGA: Xmit ZDACW 30129\n [Z Motor]
17-03-17 21:24:45.558 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:24:45.558 -07 000000480 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:45.558 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:45.558 -07 000000480 INF: Y Motor: Moving 1349 steps-27
17-03-17 21:24:45.558 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:24:45.568 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:45.568 -07 000000626 INF: FPGA: 'ZDACW 30129' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:24:45.578 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:45.588 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:45.588 -07 000000424 INF: FPGA: Recv ZDACR 30129
17-03-17 21:24:45.598 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:24:45.598 -07 000000626 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:24:45.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:24:45.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:24:45.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:45.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 21:24:45.748 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:24:45.748 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:45.748 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:45.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:45.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:24:45.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:24:45.768 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:45.768 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:24:45.948 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:24:45.948 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:24:45.988 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:45.988 -07 000000415 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:24:45.998 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:45.998 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:45.998 -07 000000480 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:24:45.998 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 21:24:46.668 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.007176,
17-03-17 21:24:46.878 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:46.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:46.948 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:46.948 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:24:46.958 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:46.958 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:46.978 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:46.978 -07 000000480 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:46.978 -07 000000480 INF: Y Motor: Moved to 67.3721 after 1438 ms (table move)
17-03-17 21:24:46.978 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137922 mm (DAC = 30129)
17-03-17 21:24:46.978 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:46.988 -07 000000459 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:24:46.988 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:24:46.988 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:46.988 -07 000000608 INF: FPGA: Recv ZSGSRD 30758
17-03-17 21:24:46.998 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:46.998 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:46.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30752
17-03-17 21:24:47.008 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.008 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.008 -07 000000012 INF: FPGA: Recv ZSGSRD 30751
17-03-17 21:24:47.018 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.018 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.018 -07 000000501 INF: FPGA: Recv ZSGSRD 30760
17-03-17 21:24:47.028 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.028 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30762
17-03-17 21:24:47.038 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.038 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.038 -07 000000608 INF: FPGA: Recv ZSGSRD 30757
17-03-17 21:24:47.048 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.048 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.048 -07 000000569 INF: FPGA: Recv ZSGSRD 30758
17-03-17 21:24:47.058 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.058 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.058 -07 000000012 INF: FPGA: Recv ZSGSRD 30760
17-03-17 21:24:47.068 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.068 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.068 -07 000000424 INF: FPGA: Recv ZSGSRD 30753
17-03-17 21:24:47.078 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.078 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:47.078 -07 000000480 INF: FPGA: Recv ZPIEZORD 26806
17-03-17 21:24:47.088 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.088 -07 000000476 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -8.7 V.
17-03-17 21:24:47.088 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30758 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30758 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30751 (-137.1 uncal um), Max = 30769 (-137.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:24:47.088 -07 000000476 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30758, posNoise = 11, negNoise = 7
17-03-17 21:24:47.088 -07 000000476 INF: Z Motor: After move to -0.137922, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:47.088 -07 000000476 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:24:47.088 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:47.138 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:24:47.138 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:47.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:47.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:47.138 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:47.138 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:47.138 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:47.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:47.138 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:47.138 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:47.148 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:47.148 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:47.158 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:24:47.158 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:24:47.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:47.208 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:47.408 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:47.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:47.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:47.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:24:47.438 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:47.448 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:47.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:24:47.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:24:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:24:47.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:24:47.548 -07 000000415 INF: Autofocus start
17-03-17 21:24:47.548 -07 000000415 INF: MeasureProfile start
17-03-17 21:24:47.548 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:47.548 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:47.558 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:47.558 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:47.558 -07 000000415 INF: MeasureProfile done
17-03-17 21:24:47.558 -07 000000415 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:24:47.558 -07 000000415 INF: Autofocus finished
17-03-17 21:24:47.758 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:47.758 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:47.758 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137919269067419. ----------
17-03-17 21:24:47.758 -07 000000610 INF: Cycle	50	Tile	10	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:47.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28670, sync = True, waitForSettling = True)
17-03-17 21:24:47.768 -07 000000610 INF: Z Motor: Moving to -0.131243 mm, started at -0.137919 mm, distance = 6.68 um
17-03-17 21:24:47.768 -07 000000610 INF: FPGA: Xmit ZDACW 28670\n [Z Motor]
17-03-17 21:24:47.768 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:24:47.778 -07 000000610 INF: FPGA: 'ZDACW 28670' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:47.778 -07 000000627 INF: FPGA: Recv ZDACR 28670
17-03-17 21:24:47.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:47.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.938 -07 000000459 INF: FPGA: Recv ZSGSRD 29725
17-03-17 21:24:47.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.948 -07 000000608 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:24:47.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:24:47.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.968 -07 000000424 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:24:47.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.978 -07 000000438 INF: FPGA: Recv ZSGSRD 29723
17-03-17 21:24:47.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.988 -07 000000547 INF: FPGA: Recv ZSGSRD 29722
17-03-17 21:24:47.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:47.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:47.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:24:48.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:48.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:48.008 -07 000000627 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:24:48.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:48.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:48.018 -07 000000415 INF: FPGA: Recv ZSGSRD 29722
17-03-17 21:24:48.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:48.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:48.028 -07 000000012 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:24:48.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:48.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:48.038 -07 000000626 INF: FPGA: Recv ZPIEZORD 25445
17-03-17 21:24:48.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:48.048 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -9.4 V.
17-03-17 21:24:48.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29719 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29725 (-130.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:48.048 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 6, negNoise = 4
17-03-17 21:24:48.048 -07 000000610 INF: Z Motor: After move to -0.131243, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:48.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:24:48.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:48.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:48.048 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:48.048 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:48.048 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:48.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:48.048 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:48.048 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:48.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:48.048 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:48.048 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:24:48.048 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:48.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:24:48.058 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:48.058 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:48.058 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:48.058 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:48.058 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:48.068 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:24:48.068 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:48.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28847 150\n [Camera]
17-03-17 21:24:48.268 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:48.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:48.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:48.698 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:48.698 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:48.698 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:24:48.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:48.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:48.698 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:48.698 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:48.698 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:24:48.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28847 816
17-03-17 21:24:49.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:49.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:24:49.078 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:24:49.078 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:49.088 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:49.088 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:24:49.088 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:24:49.088 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:49.088 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:24:49.088 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:49.088 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:24:49.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:49.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:49.248 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:49.248 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:49.248 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:24:49.248 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:49.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:49.248 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:49.248 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:49.248 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:24:49.438 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:24:49.438 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:49.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28847 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:24:49.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:49.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131244512652129. ------
17-03-17 21:24:49.448 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:49.448 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13772 mm
17-03-17 21:24:49.448 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:49.448 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:24:49.448 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 21:24:49.448 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30084, sync = True, waitForSettling = False)
17-03-17 21:24:49.448 -07 000000415 INF: Z Motor: Moving to -0.137716 mm, started at -0.131245 mm, distance = -6.47 um
17-03-17 21:24:49.448 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:49.458 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:49.458 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:49.458 -07 000000512 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:24:49.468 -07 000000415 INF: FPGA: Xmit ZDACW 30084\n [Z Motor]
17-03-17 21:24:49.468 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:24:49.468 -07 000000569 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:49.468 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:24:49.468 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:49.468 -07 000000569 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:24:49.478 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:49.478 -07 000000415 INF: FPGA: 'ZDACW 30084' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:24:49.488 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:49.498 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:49.498 -07 000000382 INF: FPGA: Recv ZDACR 30084
17-03-17 21:24:49.508 -07 000000415 INF: FPGA: 'ZDACR' command took 6 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:24:49.508 -07 000000415 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:24:49.638 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:24:49.638 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:24:49.638 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:49.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:24:49.638 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:24:49.638 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:49.648 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:49.648 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:24:49.648 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:24:49.648 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:24:49.678 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:49.678 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:24:49.858 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:24:49.858 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:24:49.898 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:49.898 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:24:49.908 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:49.908 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:49.908 -07 000000569 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 21:24:49.908 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec
17-03-17 21:24:50.858 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:50.858 -07 000000626 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:24:50.868 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:50.868 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:50.888 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:50.888 -07 000000569 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:50.888 -07 000000569 INF: Y Motor: Moved to 68.2056 after 1436 ms (table move)
17-03-17 21:24:50.888 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137716 mm (DAC = 30084)
17-03-17 21:24:50.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.888 -07 000000382 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:24:50.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:24:50.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.898 -07 000000626 INF: FPGA: Recv ZSGSRD 30722
17-03-17 21:24:50.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.908 -07 000000438 INF: FPGA: Recv ZSGSRD 30729
17-03-17 21:24:50.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.918 -07 000000476 INF: FPGA: Recv ZSGSRD 30719
17-03-17 21:24:50.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.928 -07 000000512 INF: FPGA: Recv ZSGSRD 30729
17-03-17 21:24:50.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30733
17-03-17 21:24:50.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:24:50.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.958 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.958 -07 000000608 INF: FPGA: Recv ZSGSRD 30721
17-03-17 21:24:50.968 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.968 -07 000000476 INF: FPGA: Recv ZSGSRD 30724
17-03-17 21:24:50.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:50.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30726
17-03-17 21:24:50.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.988 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:50.988 -07 000000382 INF: FPGA: Recv ZPIEZORD 26763
17-03-17 21:24:50.998 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:50.998 -07 000000547 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -8.7 V.
17-03-17 21:24:50.998 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30725 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30724 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30719 (-136.9 uncal um), Max = 30733 (-137.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:24:50.998 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30725, posNoise = 8, negNoise = 6
17-03-17 21:24:50.998 -07 000000547 INF: Z Motor: After move to -0.137716, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:50.998 -07 000000547 INF: Z Motor: Settle wait time = 1439 ms, measure time = 106 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:24:50.998 -07 000000547 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:51.048 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:24:51.048 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:51.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:51.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:51.048 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:51.048 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:51.048 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:51.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:51.048 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:51.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:51.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:51.058 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:51.068 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:24:51.068 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:24:51.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:51.108 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:51.308 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:51.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:51.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:51.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:51.348 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:51.348 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:51.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:24:51.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:24:51.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:51.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:24:51.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:24:51.448 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:51.448 -07 000000547 INF: Autofocus start
17-03-17 21:24:51.448 -07 000000547 INF: MeasureProfile start
17-03-17 21:24:51.448 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:51.458 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:51.458 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:51.468 -07 000000547 INF: MeasureProfile done
17-03-17 21:24:51.468 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:24:51.468 -07 000000547 INF: Autofocus finished
17-03-17 21:24:51.658 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:51.658 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:51.658 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.13770727006674. ----------
17-03-17 21:24:51.658 -07 000000610 INF: Cycle	50	Tile	11	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:51.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28608, sync = True, waitForSettling = True)
17-03-17 21:24:51.668 -07 000000610 INF: Z Motor: Moving to -0.130959 mm, started at -0.137707 mm, distance = 6.75 um
17-03-17 21:24:51.668 -07 000000610 INF: FPGA: Xmit ZDACW 28608\n [Z Motor]
17-03-17 21:24:51.668 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:24:51.678 -07 000000610 INF: FPGA: 'ZDACW 28608' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:51.678 -07 000000431 INF: FPGA: Recv ZDACR 28608
17-03-17 21:24:51.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:51.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.838 -07 000000627 INF: FPGA: Recv ZSGSRD 29674
17-03-17 21:24:51.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:51.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.848 -07 000000608 INF: FPGA: Recv ZSGSRD 29680
17-03-17 21:24:51.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.858 -07 000000431 INF: FPGA: Recv ZSGSRD 29676
17-03-17 21:24:51.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.868 -07 000000475 INF: FPGA: Recv ZSGSRD 29674
17-03-17 21:24:51.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.878 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:51.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:51.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29674
17-03-17 21:24:51.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.888 -07 000000627 INF: FPGA: Recv ZSGSRD 29672
17-03-17 21:24:51.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.898 -07 000000459 INF: FPGA: Recv ZSGSRD 29676
17-03-17 21:24:51.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.908 -07 000000424 INF: FPGA: Recv ZSGSRD 29677
17-03-17 21:24:51.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.918 -07 000000547 INF: FPGA: Recv ZSGSRD 29673
17-03-17 21:24:51.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:51.928 -07 000000475 INF: FPGA: Recv ZSGSRD 29674
17-03-17 21:24:51.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:51.938 -07 000000512 INF: FPGA: Recv ZPIEZORD 25402
17-03-17 21:24:51.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:51.948 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.4 V.
17-03-17 21:24:51.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29675 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29672 (-130.2 uncal um), Max = 29680 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:24:51.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29675, posNoise = 5, negNoise = 3
17-03-17 21:24:51.948 -07 000000610 INF: Z Motor: After move to -0.130959, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:51.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:51.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:51.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:51.948 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:51.948 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:51.948 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:51.948 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:51.948 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:51.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:51.948 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:24:51.948 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:51.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:51.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:51.948 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:51.948 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:51.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:24:51.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:51.958 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:24:51.958 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:24:51.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:24:51.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:24:51.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28785 150\n [Camera]
17-03-17 21:24:52.028 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.997626,
17-03-17 21:24:52.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:52.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:52.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:52.598 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:52.598 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:52.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:52.598 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:52.608 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:52.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:52.608 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:52.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:52.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28785 816
17-03-17 21:24:52.938 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:52.978 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 21:24:52.978 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 21:24:52.978 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:52.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:24:52.978 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:24:52.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:52.978 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:52.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:52.978 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:24:52.988 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:24:53.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:53.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:53.148 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:53.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:53.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:53.158 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:53.158 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:53.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:24:53.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:53.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:24:53.338 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:24:53.338 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:53.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28785 150' command took 2 ms to send, 1366 ms to get response, and 1373 ms overall
17-03-17 21:24:53.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:53.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130961847317891. ------
17-03-17 21:24:53.348 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13766 mm
17-03-17 21:24:53.348 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:53.348 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:53.348 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:24:53.348 -07 000000012 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 21:24:53.348 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30071, sync = True, waitForSettling = False)
17-03-17 21:24:53.348 -07 000000382 INF: Z Motor: Moving to -0.137656 mm, started at -0.130962 mm, distance = -6.69 um
17-03-17 21:24:53.348 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:53.358 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:53.358 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:24:53.358 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:24:53.368 -07 000000382 INF: FPGA: Xmit ZDACW 30071\n [Z Motor]
17-03-17 21:24:53.368 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:24:53.368 -07 000000012 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:53.368 -07 000000012 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:53.368 -07 000000012 INF: Y Motor: Moving 1339 steps-14
17-03-17 21:24:53.368 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:24:53.378 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:53.378 -07 000000382 INF: FPGA: 'ZDACW 30071' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:24:53.388 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:53.398 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:53.508 -07 000000476 INF: FPGA: Recv ZDACR 30071
17-03-17 21:24:53.518 -07 000000382 INF: FPGA: 'ZDACR' command took 116 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 21:24:53.518 -07 000000382 INF: Z Motor: MoveAbsStepped took 164 ms (did NOT wait for settling yet))
17-03-17 21:24:53.558 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:24:53.558 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:24:53.558 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:53.558 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:53.558 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:24:53.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:24:53.558 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:24:53.558 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:53.558 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:53.568 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:24:53.578 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:53.578 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:24:53.758 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:24:53.758 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:24:53.798 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:53.798 -07 000000459 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:24:53.808 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:24:53.808 -07 000000012 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:53.808 -07 000000012 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:24:53.808 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-17 21:24:54.758 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:54.758 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:24:54.768 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:54.768 -07 000000012 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:54.788 -07 000000012 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:54.788 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:24:54.788 -07 000000012 INF: Y Motor: Moved to 69.0278 after 1439 ms (table move)
17-03-17 21:24:54.788 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137656 mm (DAC = 30071)
17-03-17 21:24:54.788 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.798 -07 000000512 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:24:54.798 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:24:54.798 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.798 -07 000000501 INF: FPGA: Recv ZSGSRD 30718
17-03-17 21:24:54.808 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.808 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.808 -07 000000626 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:24:54.818 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.818 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.818 -07 000000627 INF: FPGA: Recv ZSGSRD 30712
17-03-17 21:24:54.828 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.828 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.828 -07 000000012 INF: FPGA: Recv ZSGSRD 30718
17-03-17 21:24:54.838 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.838 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.838 -07 000000512 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:24:54.848 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.848 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.848 -07 000000576 INF: FPGA: Recv ZSGSRD 30720
17-03-17 21:24:54.858 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.858 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.858 -07 000000458 INF: FPGA: Recv ZSGSRD 30714
17-03-17 21:24:54.868 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.868 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30714
17-03-17 21:24:54.878 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.878 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:54.878 -07 000000012 INF: FPGA: Recv ZSGSRD 30715
17-03-17 21:24:54.888 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.888 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:54.888 -07 000000512 INF: FPGA: Recv ZPIEZORD 26747
17-03-17 21:24:54.898 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:54.898 -07 000000475 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.589 V. Piezo Error = -8.7 V.
17-03-17 21:24:54.898 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30718 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30718 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30712 (-136.8 uncal um), Max = 30723 (-136.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:24:54.898 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30718, posNoise = 5, negNoise = 6
17-03-17 21:24:54.898 -07 000000475 INF: Z Motor: After move to -0.137656, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:54.898 -07 000000475 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:24:54.898 -07 000000475 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:54.948 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:24:54.948 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:54.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:54.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:54.948 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:54.948 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:54.948 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:54.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:54.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:54.948 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:54.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:54.958 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:54.968 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:24:54.968 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:24:54.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:55.018 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:55.218 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:55.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:55.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:55.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:24:55.258 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:55.258 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:55.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:24:55.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:24:55.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:55.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:24:55.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:24:55.358 -07 000000480 INF: Autofocus start
17-03-17 21:24:55.358 -07 000000480 INF: MeasureProfile start
17-03-17 21:24:55.358 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:55.358 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:55.368 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:55.368 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:55.368 -07 000000480 INF: MeasureProfile done
17-03-17 21:24:55.368 -07 000000480 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:24:55.368 -07 000000480 INF: Autofocus finished
17-03-17 21:24:55.568 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:55.568 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:55.568 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137662300581748. ----------
17-03-17 21:24:55.568 -07 000000610 INF: Cycle	50	Tile	12	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:55.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28549, sync = True, waitForSettling = True)
17-03-17 21:24:55.578 -07 000000610 INF: Z Motor: Moving to -0.130689 mm, started at -0.137662 mm, distance = 6.97 um
17-03-17 21:24:55.578 -07 000000610 INF: FPGA: Xmit ZDACW 28549\n [Z Motor]
17-03-17 21:24:55.578 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:24:55.588 -07 000000610 INF: FPGA: 'ZDACW 28549' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:55.588 -07 000000627 INF: FPGA: Recv ZDACR 28549
17-03-17 21:24:55.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:55.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.748 -07 000000424 INF: FPGA: Recv ZSGSRD 29632
17-03-17 21:24:55.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:55.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.758 -07 000000626 INF: FPGA: Recv ZSGSRD 29637
17-03-17 21:24:55.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:55.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29639
17-03-17 21:24:55.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.778 -07 000000459 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:24:55.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.788 -07 000000608 INF: FPGA: Recv ZSGSRD 29637
17-03-17 21:24:55.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.798 -07 000000501 INF: FPGA: Recv ZSGSRD 29633
17-03-17 21:24:55.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.808 -07 000000480 INF: FPGA: Recv ZSGSRD 29632
17-03-17 21:24:55.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.818 -07 000000415 INF: FPGA: Recv ZSGSRD 29624
17-03-17 21:24:55.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29621
17-03-17 21:24:55.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:55.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29639
17-03-17 21:24:55.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:55.848 -07 000000429 INF: FPGA: Recv ZPIEZORD 25355
17-03-17 21:24:55.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:55.858 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.4 V.
17-03-17 21:24:55.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29632 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29632 (-129.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29621 (-129.8 uncal um), Max = 29639 (-130.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:24:55.858 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29632, posNoise = 7, negNoise = 11
17-03-17 21:24:55.858 -07 000000610 INF: Z Motor: After move to -0.130689, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:55.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:24:55.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:55.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:55.858 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:55.858 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:55.858 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:55.858 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:55.858 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:55.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:55.858 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:55.858 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:55.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:55.858 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:55.868 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:55.868 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:55.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:55.868 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:55.868 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:24:55.868 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:24:55.878 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:55.878 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:24:55.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28725 150\n [Camera]
17-03-17 21:24:56.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:24:56.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:24:56.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:24:56.508 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:56.518 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:56.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:24:56.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:24:56.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:24:56.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:56.528 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:56.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:24:56.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28725 816
17-03-17 21:24:56.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:24:56.878 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:24:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:24:56.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:24:56.898 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:24:56.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:56.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:24:56.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:24:56.908 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:56.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:56.908 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:24:56.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:24:56.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:24:57.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:24:57.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:24:57.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:24:57.058 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:24:57.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:24:57.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:24:57.058 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:24:57.068 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:24:57.068 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:24:57.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:24:57.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:24:57.248 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:24:57.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28725 150' command took 2 ms to send, 1367 ms to get response, and 1372 ms overall
17-03-17 21:24:57.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:24:57.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130685606195796. ------
17-03-17 21:24:57.258 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13713 mm
17-03-17 21:24:57.258 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:24:57.258 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:57.258 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:24:57.258 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 21:24:57.258 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:57.278 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 17 ms overall
17-03-17 21:24:57.278 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29955, sync = True, waitForSettling = False)
17-03-17 21:24:57.278 -07 000000438 INF: Z Motor: Moving to -0.137125 mm, started at -0.130686 mm, distance = -6.44 um
17-03-17 21:24:57.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:57.278 -07 000000475 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:24:57.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 11 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:24:57.288 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:57.288 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:24:57.288 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:24:57.288 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:24:57.298 -07 000000438 INF: FPGA: Xmit ZDACW 29955\n [Z Motor]
17-03-17 21:24:57.298 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:24:57.308 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:24:57.308 -07 000000438 INF: FPGA: 'ZDACW 29955' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:24:57.318 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:57.318 -07 000000512 INF: FPGA: Recv ZDACR 29955
17-03-17 21:24:57.328 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:24:57.328 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:24:57.388 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.02213,
17-03-17 21:24:57.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:24:57.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:24:57.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:57.448 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:24:57.448 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:24:57.448 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:57.448 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:57.448 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:24:57.448 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:24:57.458 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:24:57.488 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:24:57.488 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 21:24:57.678 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:24:57.678 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:24:57.718 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:57.728 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:24:57.728 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:24:57.728 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:57.728 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:24:57.728 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 21:24:58.678 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:24:58.678 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:24:58.688 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.688 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:24:58.708 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:24:58.708 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:24:58.708 -07 000000626 INF: Y Motor: Moved to 69.8633 after 1449 ms (table move)
17-03-17 21:24:58.708 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137125 mm (DAC = 29955)
17-03-17 21:24:58.708 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.718 -07 000000547 INF: FPGA: Recv ZSGSRD 30648
17-03-17 21:24:58.718 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:24:58.718 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.718 -07 000000459 INF: FPGA: Recv ZSGSRD 30635
17-03-17 21:24:58.728 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:58.728 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.728 -07 000000627 INF: FPGA: Recv ZSGSRD 30634
17-03-17 21:24:58.738 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.738 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.738 -07 000000608 INF: FPGA: Recv ZSGSRD 30638
17-03-17 21:24:58.748 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.748 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.748 -07 000000431 INF: FPGA: Recv ZSGSRD 30640
17-03-17 21:24:58.758 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.758 -07 000000547 INF: FPGA: Recv ZSGSRD 30641
17-03-17 21:24:58.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.768 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30639
17-03-17 21:24:58.778 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.778 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.778 -07 000000438 INF: FPGA: Recv ZSGSRD 30628
17-03-17 21:24:58.788 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.788 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.788 -07 000000547 INF: FPGA: Recv ZSGSRD 30635
17-03-17 21:24:58.798 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:24:58.798 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:58.798 -07 000000458 INF: FPGA: Recv ZSGSRD 30638
17-03-17 21:24:58.808 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.808 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:58.808 -07 000000431 INF: FPGA: Recv ZPIEZORD 26647
17-03-17 21:24:58.818 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:58.818 -07 000000569 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.571 V. Piezo Error = -8.8 V.
17-03-17 21:24:58.818 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30638 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30638 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30628 (-136.3 uncal um), Max = 30648 (-136.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:24:58.818 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30638, posNoise = 10, negNoise = 10
17-03-17 21:24:58.818 -07 000000569 INF: Z Motor: After move to -0.137125, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:58.818 -07 000000569 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:24:58.818 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:24:58.868 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:24:58.868 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:24:58.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:58.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:58.868 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:58.868 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:58.868 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:24:58.868 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:58.868 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:24:58.868 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:24:58.868 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:24:58.868 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:24:58.888 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:24:58.888 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:24:58.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:24:58.938 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:24:59.128 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:24:59.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:24:59.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:24:59.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:24:59.168 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:24:59.178 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:24:59.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:24:59.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:24:59.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:24:59.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:24:59.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:24:59.278 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:24:59.278 -07 000000424 INF: Autofocus start
17-03-17 21:24:59.278 -07 000000424 INF: MeasureProfile start
17-03-17 21:24:59.278 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:24:59.288 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:24:59.288 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:24:59.288 -07 000000424 INF: MeasureProfile done
17-03-17 21:24:59.288 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:24:59.288 -07 000000424 INF: Autofocus finished
17-03-17 21:24:59.488 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:24:59.488 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:24:59.488 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.137148363610407. ----------
17-03-17 21:24:59.488 -07 000000610 INF: Cycle	50	Tile	13	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:24:59.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28462, sync = True, waitForSettling = True)
17-03-17 21:24:59.498 -07 000000610 INF: Z Motor: Moving to -0.130291 mm, started at -0.137148 mm, distance = 6.86 um
17-03-17 21:24:59.498 -07 000000610 INF: FPGA: Xmit ZDACW 28462\n [Z Motor]
17-03-17 21:24:59.498 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:24:59.508 -07 000000610 INF: FPGA: 'ZDACW 28462' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:24:59.508 -07 000000475 INF: FPGA: Recv ZDACR 28462
17-03-17 21:24:59.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:24:59.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.668 -07 000000415 INF: FPGA: Recv ZSGSRD 29577
17-03-17 21:24:59.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:24:59.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.678 -07 000000459 INF: FPGA: Recv ZSGSRD 29573
17-03-17 21:24:59.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.688 -07 000000569 INF: FPGA: Recv ZSGSRD 29570
17-03-17 21:24:59.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29569
17-03-17 21:24:59.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.708 -07 000000608 INF: FPGA: Recv ZSGSRD 29574
17-03-17 21:24:59.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.718 -07 000000012 INF: FPGA: Recv ZSGSRD 29573
17-03-17 21:24:59.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.728 -07 000000547 INF: FPGA: Recv ZSGSRD 29568
17-03-17 21:24:59.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29575
17-03-17 21:24:59.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29573
17-03-17 21:24:59.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:24:59.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29571
17-03-17 21:24:59.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:24:59.768 -07 000000415 INF: FPGA: Recv ZPIEZORD 25279
17-03-17 21:24:59.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:24:59.778 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.4 V.
17-03-17 21:24:59.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29572 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29573 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29568 (-129.5 uncal um), Max = 29577 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:24:59.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29572, posNoise = 5, negNoise = 4
17-03-17 21:24:59.778 -07 000000610 INF: Z Motor: After move to -0.130291, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:24:59.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:24:59.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:24:59.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:24:59.778 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:24:59.778 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:24:59.778 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:24:59.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:24:59.778 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:24:59.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:24:59.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:24:59.778 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:24:59.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:24:59.778 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:24:59.788 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:24:59.788 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:24:59.788 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:24:59.788 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:24:59.788 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:24:59.788 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:24:59.798 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:24:59.798 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:24:59.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28639 150\n [Camera]
17-03-17 21:24:59.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:25:00.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:25:00.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:25:00.428 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:00.428 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:00.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:25:00.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:25:00.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:25:00.428 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:00.428 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:00.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:25:00.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28639 819
17-03-17 21:25:00.768 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:25:00.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:25:00.808 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:25:00.808 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:00.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:25:00.808 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:25:00.808 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:00.818 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:25:00.818 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:25:00.818 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:25:00.828 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:25:00.978 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:00.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:00.978 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:00.978 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:00.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:25:00.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:00.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:00.978 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:00.978 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:00.978 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:25:01.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:25:01.168 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:01.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28639 150' command took 2 ms to send, 1365 ms to get response, and 1372 ms overall
17-03-17 21:25:01.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:25:01.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.13030015346729. ------
17-03-17 21:25:01.178 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:01.178 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13671 mm
17-03-17 21:25:01.178 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:25:01.178 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:25:01.178 -07 000000608 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:25:01.178 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:01.178 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29864, sync = True, waitForSettling = False)
17-03-17 21:25:01.178 -07 000000012 INF: Z Motor: Moving to -0.136709 mm, started at -0.130300 mm, distance = -6.41 um
17-03-17 21:25:01.188 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:25:01.188 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:01.188 -07 000000547 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:25:01.198 -07 000000012 INF: FPGA: Xmit ZDACW 29864\n [Z Motor]
17-03-17 21:25:01.198 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:25:01.198 -07 000000608 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:01.198 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:25:01.318 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:25:01.318 -07 000000608 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:25:01.318 -07 000000608 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:25:01.318 -07 000000012 INF: FPGA: 'ZDACW 29864' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-17 21:25:01.328 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:25:01.338 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:01.338 -07 000000475 INF: FPGA: Recv ZDACR 29864
17-03-17 21:25:01.348 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:25:01.348 -07 000000012 INF: Z Motor: MoveAbsStepped took 164 ms (did NOT wait for settling yet))
17-03-17 21:25:01.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:25:01.368 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:25:01.368 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:01.378 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:25:01.378 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:25:01.378 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:01.378 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:01.378 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:25:01.378 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:25:01.388 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:25:01.518 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:25:01.518 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 338 ms overall
17-03-17 21:25:01.698 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:25:01.698 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 21:25:01.738 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:01.748 -07 000000459 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:25:01.748 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:25:01.748 -07 000000608 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:01.748 -07 000000608 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:25:01.748 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.197 mm/sec
17-03-17 21:25:01.878 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:02.698 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:02.698 -07 000000476 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:25:02.708 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:25:02.708 -07 000000608 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:02.728 -07 000000608 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:02.728 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:25:02.728 -07 000000608 INF: Y Motor: Moved to 70.6890 after 1549 ms (table move)
17-03-17 21:25:02.728 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136709 mm (DAC = 29864)
17-03-17 21:25:02.728 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30578
17-03-17 21:25:02.738 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:25:02.748 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.748 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.014009,
17-03-17 21:25:02.748 -07 000000438 INF: FPGA: Recv ZSGSRD 30573
17-03-17 21:25:02.758 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:25:02.768 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30574
17-03-17 21:25:02.778 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:25:02.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.788 -07 000000480 INF: FPGA: Recv ZSGSRD 30571
17-03-17 21:25:02.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:25:02.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.808 -07 000000501 INF: FPGA: Recv ZSGSRD 30564
17-03-17 21:25:02.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:25:02.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.818 -07 000000431 INF: FPGA: Recv ZSGSRD 30572
17-03-17 21:25:02.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:02.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.838 -07 000000012 INF: FPGA: Recv ZSGSRD 30572
17-03-17 21:25:02.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:25:02.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.848 -07 000000415 INF: FPGA: Recv ZSGSRD 30571
17-03-17 21:25:02.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:25:02.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.858 -07 000000424 INF: FPGA: Recv ZSGSRD 30574
17-03-17 21:25:02.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:02.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:02.868 -07 000000480 INF: FPGA: Recv ZSGSRD 30573
17-03-17 21:25:02.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:02.888 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:02.888 -07 000000576 INF: FPGA: Recv ZPIEZORD 26640
17-03-17 21:25:02.898 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:25:02.898 -07 000000627 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -8.7 V.
17-03-17 21:25:02.898 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30572 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30572 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30564 (-135.9 uncal um), Max = 30578 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:25:02.898 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30572, posNoise = 6, negNoise = 8
17-03-17 21:25:02.898 -07 000000627 INF: Z Motor: After move to -0.136709, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:02.898 -07 000000627 INF: Z Motor: Settle wait time = 1552 ms, measure time = 162 ms (allowed 150 ms), total time = 1714 ms
17-03-17 21:25:02.898 -07 000000627 INF: Z Motor: Warning: Actual position measuring time = 162 ms, longer than max expected time of 150 ms
17-03-17 21:25:02.898 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 21:25:02.898 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:25:02.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:02.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:02.898 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:02.898 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:02.898 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:25:02.898 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:02.898 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:02.898 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:25:02.908 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:02.908 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:25:02.908 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:25:02.908 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:25:02.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:25:02.958 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:25:03.158 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:25:03.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:25:03.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:25:03.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:25:03.198 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:25:03.198 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:25:03.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 21:25:03.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 21:25:03.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:03.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:25:03.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:25:03.298 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:03.298 -07 000000476 INF: Autofocus start
17-03-17 21:25:03.298 -07 000000476 INF: MeasureProfile start
17-03-17 21:25:03.308 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:03.308 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:25:03.308 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:25:03.318 -07 000000476 INF: MeasureProfile done
17-03-17 21:25:03.318 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:25:03.318 -07 000000476 INF: Autofocus finished
17-03-17 21:25:03.508 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:25:03.508 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:25:03.508 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136724365609051. ----------
17-03-17 21:25:03.508 -07 000000610 INF: Cycle	50	Tile	14	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:25:03.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28372, sync = True, waitForSettling = True)
17-03-17 21:25:03.518 -07 000000610 INF: Z Motor: Moving to -0.129879 mm, started at -0.136724 mm, distance = 6.85 um
17-03-17 21:25:03.518 -07 000000610 INF: FPGA: Xmit ZDACW 28372\n [Z Motor]
17-03-17 21:25:03.518 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:25:03.528 -07 000000610 INF: FPGA: 'ZDACW 28372' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:25:03.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:03.528 -07 000000012 INF: FPGA: Recv ZDACR 28372
17-03-17 21:25:03.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:25:03.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.688 -07 000000569 INF: FPGA: Recv ZSGSRD 29510
17-03-17 21:25:03.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:25:03.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29514
17-03-17 21:25:03.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.708 -07 000000475 INF: FPGA: Recv ZSGSRD 29504
17-03-17 21:25:03.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.718 -07 000000431 INF: FPGA: Recv ZSGSRD 29500
17-03-17 21:25:03.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29513
17-03-17 21:25:03.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29509
17-03-17 21:25:03.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.748 -07 000000382 INF: FPGA: Recv ZSGSRD 29503
17-03-17 21:25:03.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29504
17-03-17 21:25:03.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.768 -07 000000501 INF: FPGA: Recv ZSGSRD 29505
17-03-17 21:25:03.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:03.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29508
17-03-17 21:25:03.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:03.788 -07 000000424 INF: FPGA: Recv ZPIEZORD 25219
17-03-17 21:25:03.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:03.798 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.4 V.
17-03-17 21:25:03.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29507 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29506 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29500 (-129.1 uncal um), Max = 29514 (-129.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:25:03.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29507, posNoise = 7, negNoise = 7
17-03-17 21:25:03.798 -07 000000610 INF: Z Motor: After move to -0.129879, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:03.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:25:03.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:03.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:03.798 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:03.798 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:03.798 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:25:03.798 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:03.798 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:25:03.798 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:25:03.798 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:25:03.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:25:03.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:25:03.798 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:25:03.808 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:03.808 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:25:03.808 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:25:03.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:25:03.818 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 21:25:03.818 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:25:03.818 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:25:03.818 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:25:03.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28549 150\n [Camera]
17-03-17 21:25:04.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:25:04.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:25:04.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:25:04.448 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:04.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:25:04.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:25:04.458 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:04.458 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:04.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:25:04.458 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:04.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:25:04.648 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28549 816
17-03-17 21:25:04.798 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:25:04.828 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:25:04.828 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:25:04.828 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:04.838 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:04.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:25:04.838 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:25:04.838 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:04.838 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:04.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:25:04.838 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:25:04.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:04.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:04.998 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:05.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:05.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:05.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:05.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:05.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:25:05.008 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:05.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:25:05.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:25:05.198 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:05.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28549 150' command took 2 ms to send, 1360 ms to get response, and 1373 ms overall
17-03-17 21:25:05.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:25:05.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129882579678076. ------
17-03-17 21:25:05.198 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:05.198 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13612 mm
17-03-17 21:25:05.198 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:25:05.198 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:25:05.198 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 21:25:05.198 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29736, sync = True, waitForSettling = False)
17-03-17 21:25:05.198 -07 000000627 INF: Z Motor: Moving to -0.136123 mm, started at -0.129883 mm, distance = -6.24 um
17-03-17 21:25:05.198 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:05.208 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:25:05.208 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:05.318 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:25:05.318 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:25:05.318 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 21:25:05.318 -07 000000459 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:05.318 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:25:05.318 -07 000000459 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:25:05.328 -07 000000627 INF: FPGA: Xmit ZDACW 29736\n [Z Motor]
17-03-17 21:25:05.328 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:25:05.338 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:25:05.338 -07 000000627 INF: FPGA: 'ZDACW 29736' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 21:25:05.348 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:05.348 -07 000000429 INF: FPGA: Recv ZDACR 29736
17-03-17 21:25:05.358 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:25:05.358 -07 000000627 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 21:25:05.398 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:25:05.398 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:25:05.398 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:05.408 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:05.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:25:05.408 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:25:05.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:05.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:05.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:25:05.408 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:25:05.518 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:25:05.528 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 319 ms overall
17-03-17 21:25:05.718 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:25:05.718 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-17 21:25:05.758 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:05.758 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:25:05.768 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:05.768 -07 000000459 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:05.768 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:25:05.768 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 21:25:06.718 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:06.718 -07 000000608 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:25:06.728 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:25:06.728 -07 000000459 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:06.758 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:06.758 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:25:06.758 -07 000000459 INF: Y Motor: Moved to 71.5190 after 1556 ms (table move)
17-03-17 21:25:06.758 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136123 mm (DAC = 29736)
17-03-17 21:25:06.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.768 -07 000000382 INF: FPGA: Recv ZSGSRD 30485
17-03-17 21:25:06.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:25:06.768 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.768 -07 000000608 INF: FPGA: Recv ZSGSRD 30481
17-03-17 21:25:06.778 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:25:06.778 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.778 -07 000000382 INF: FPGA: Recv ZSGSRD 30484
17-03-17 21:25:06.788 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.788 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.788 -07 000000608 INF: FPGA: Recv ZSGSRD 30475
17-03-17 21:25:06.798 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.798 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30483
17-03-17 21:25:06.808 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.808 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.808 -07 000000476 INF: FPGA: Recv ZSGSRD 30477
17-03-17 21:25:06.818 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.818 -07 000000458 INF: FPGA: Recv ZSGSRD 30476
17-03-17 21:25:06.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.828 -07 000000429 INF: FPGA: Recv ZSGSRD 30474
17-03-17 21:25:06.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.838 -07 000000480 INF: FPGA: Recv ZSGSRD 30475
17-03-17 21:25:06.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:06.848 -07 000000512 INF: FPGA: Recv ZSGSRD 30488
17-03-17 21:25:06.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.858 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:06.858 -07 000000424 INF: FPGA: Recv ZPIEZORD 26536
17-03-17 21:25:06.868 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:06.868 -07 000000569 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.537 V. Piezo Error = -8.7 V.
17-03-17 21:25:06.868 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30480 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30479 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30474 (-135.3 uncal um), Max = 30488 (-135.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:25:06.868 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30480, posNoise = 8, negNoise = 6
17-03-17 21:25:06.868 -07 000000569 INF: Z Motor: After move to -0.136123, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:06.868 -07 000000569 INF: Z Motor: Settle wait time = 1561 ms, measure time = 101 ms (allowed 150 ms), total time = 1662 ms
17-03-17 21:25:06.868 -07 000000569 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:25:06.878 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:06.918 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 21:25:06.918 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:25:06.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:06.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:06.918 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:06.918 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:25:06.918 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:06.918 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:06.918 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:06.918 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:25:06.928 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:25:06.928 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:25:06.928 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:25:06.928 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:25:06.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:25:06.978 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:25:07.178 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:25:07.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:25:07.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:25:07.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:25:07.218 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:25:07.218 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:25:07.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 21:25:07.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:25:07.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:07.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:25:07.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:25:07.318 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:07.318 -07 000000576 INF: Autofocus start
17-03-17 21:25:07.318 -07 000000576 INF: MeasureProfile start
17-03-17 21:25:07.318 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:07.328 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:25:07.328 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:25:07.338 -07 000000576 INF: MeasureProfile done
17-03-17 21:25:07.338 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:25:07.338 -07 000000576 INF: Autofocus finished
17-03-17 21:25:07.528 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:25:07.528 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:25:07.528 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136133338092009. ----------
17-03-17 21:25:07.528 -07 000000610 INF: Cycle	50	Tile	15	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:25:07.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28260, sync = True, waitForSettling = True)
17-03-17 21:25:07.538 -07 000000610 INF: Z Motor: Moving to -0.129366 mm, started at -0.136133 mm, distance = 6.77 um
17-03-17 21:25:07.538 -07 000000610 INF: FPGA: Xmit ZDACW 28260\n [Z Motor]
17-03-17 21:25:07.538 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:25:07.548 -07 000000610 INF: FPGA: 'ZDACW 28260' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:07.548 -07 000000512 INF: FPGA: Recv ZDACR 28260
17-03-17 21:25:07.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:25:07.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29427
17-03-17 21:25:07.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:25:07.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.718 -07 000000458 INF: FPGA: Recv ZSGSRD 29425
17-03-17 21:25:07.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.728 -07 000000512 INF: FPGA: Recv ZSGSRD 29423
17-03-17 21:25:07.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.738 -07 000000012 INF: FPGA: Recv ZSGSRD 29424
17-03-17 21:25:07.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.748 -07 000000569 INF: FPGA: Recv ZSGSRD 29431
17-03-17 21:25:07.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29423
17-03-17 21:25:07.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29425
17-03-17 21:25:07.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.778 -07 000000424 INF: FPGA: Recv ZSGSRD 29431
17-03-17 21:25:07.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.788 -07 000000382 INF: FPGA: Recv ZSGSRD 29428
17-03-17 21:25:07.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:07.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29432
17-03-17 21:25:07.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:07.808 -07 000000424 INF: FPGA: Recv ZPIEZORD 25178
17-03-17 21:25:07.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:07.818 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.3 V.
17-03-17 21:25:07.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29427 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29426 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29423 (-128.6 uncal um), Max = 29432 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:25:07.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29427, posNoise = 5, negNoise = 4
17-03-17 21:25:07.818 -07 000000610 INF: Z Motor: After move to -0.129366, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:07.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:25:07.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:07.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:07.818 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:07.818 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:07.818 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:25:07.818 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:25:07.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:25:07.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:07.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:25:07.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:25:07.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:07.818 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:25:07.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:07.828 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:25:07.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:25:07.828 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:25:07.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:25:07.838 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:25:07.838 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:25:07.838 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:25:07.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28437 150\n [Camera]
17-03-17 21:25:08.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:25:08.158 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.986717,
17-03-17 21:25:08.478 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:25:08.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:25:08.478 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:08.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:25:08.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:25:08.478 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:08.478 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:08.478 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:25:08.488 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:08.488 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:25:08.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28437 816
17-03-17 21:25:08.818 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:25:08.878 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:25:08.878 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:25:08.878 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:08.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:25:08.878 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:25:08.878 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:08.878 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:08.878 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:25:08.878 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:08.888 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:25:09.028 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:09.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:09.028 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:09.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:09.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:09.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) start.
17-03-17 21:25:09.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:09.028 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:09.028 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:09.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:25:09.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:25:09.218 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:09.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28437 150' command took 2 ms to send, 1364 ms to get response, and 1375 ms overall
17-03-17 21:25:09.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:25:09.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129368642706735. ------
17-03-17 21:25:09.218 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:09.218 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13574 mm
17-03-17 21:25:09.218 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:25:09.228 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29653, sync = True, waitForSettling = False)
17-03-17 21:25:09.228 -07 000000458 INF: Z Motor: Moving to -0.135743 mm, started at -0.129369 mm, distance = -6.37 um
17-03-17 21:25:09.228 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:25:09.228 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 21:25:09.228 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:09.228 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:25:09.228 -07 000000458 INF: FPGA: Xmit ZDACW 29653\n [Z Motor]
17-03-17 21:25:09.228 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:25:09.238 -07 000000458 INF: FPGA: 'ZDACW 29653' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:25:09.238 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:25:09.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:09.248 -07 000000424 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:25:09.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:25:09.258 -07 000000576 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:09.258 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:09.258 -07 000000480 INF: FPGA: Recv ZDACR 29653
17-03-17 21:25:09.258 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:25:09.258 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:25:09.268 -07 000000458 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:25:09.268 -07 000000458 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:25:09.268 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:25:09.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:25:09.428 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:25:09.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:09.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2367752976, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:25:09.438 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:25:09.438 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:09.438 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:25:09.438 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 21:25:09.438 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:25:09.438 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:25:09.438 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:25:09.448 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:25:09.638 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:25:09.638 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 21:25:09.678 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:09.678 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:25:09.688 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:25:09.688 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:09.688 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:25:09.688 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 21:25:10.638 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:10.638 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:25:10.648 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.648 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:10.668 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:10.668 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:25:10.668 -07 000000576 INF: Y Motor: Moved to 72.3496 after 1441 ms (table move)
17-03-17 21:25:10.668 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135743 mm (DAC = 29653)
17-03-17 21:25:10.668 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.678 -07 000000012 INF: FPGA: Recv ZSGSRD 30419
17-03-17 21:25:10.678 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:25:10.678 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.678 -07 000000475 INF: FPGA: Recv ZSGSRD 30418
17-03-17 21:25:10.688 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.688 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.688 -07 000000608 INF: FPGA: Recv ZSGSRD 30418
17-03-17 21:25:10.698 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.698 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.698 -07 000000547 INF: FPGA: Recv ZSGSRD 30423
17-03-17 21:25:10.708 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.708 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.708 -07 000000480 INF: FPGA: Recv ZSGSRD 30423
17-03-17 21:25:10.718 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.718 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.718 -07 000000627 INF: FPGA: Recv ZSGSRD 30428
17-03-17 21:25:10.728 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.728 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.728 -07 000000438 INF: FPGA: Recv ZSGSRD 30418
17-03-17 21:25:10.738 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.738 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30412
17-03-17 21:25:10.748 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.748 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.748 -07 000000476 INF: FPGA: Recv ZSGSRD 30410
17-03-17 21:25:10.758 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:10.758 -07 000000608 INF: FPGA: Recv ZSGSRD 30417
17-03-17 21:25:10.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.768 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:10.768 -07 000000547 INF: FPGA: Recv ZPIEZORD 26443
17-03-17 21:25:10.778 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:10.778 -07 000000569 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -8.8 V.
17-03-17 21:25:10.778 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30419 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30418 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30410 (-134.9 uncal um), Max = 30428 (-135.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:25:10.778 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30419, posNoise = 9, negNoise = 9
17-03-17 21:25:10.778 -07 000000569 INF: Z Motor: After move to -0.135743, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:10.778 -07 000000569 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:25:10.778 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:25:10.828 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:25:10.828 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:25:10.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:10.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:10.828 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:10.828 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:10.828 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:25:10.828 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:10.828 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:10.828 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:25:10.838 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:10.838 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:25:10.848 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:25:10.848 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:25:10.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:25:10.898 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:25:11.088 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:25:11.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:25:11.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:25:11.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:25:11.128 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:25:11.138 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:25:11.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:25:11.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:25:11.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:11.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:25:11.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:25:11.238 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:11.238 -07 000000608 INF: Autofocus start
17-03-17 21:25:11.238 -07 000000608 INF: MeasureProfile start
17-03-17 21:25:11.238 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:11.248 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:25:11.248 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:25:11.248 -07 000000608 INF: MeasureProfile done
17-03-17 21:25:11.248 -07 000000608 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:25:11.248 -07 000000608 INF: Autofocus finished
17-03-17 21:25:11.448 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:25:11.448 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:25:11.448 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135741461151362. ----------
17-03-17 21:25:11.448 -07 000000610 INF: Cycle	50	Tile	16	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:25:11.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28148, sync = True, waitForSettling = True)
17-03-17 21:25:11.458 -07 000000610 INF: Z Motor: Moving to -0.128853 mm, started at -0.135741 mm, distance = 6.89 um
17-03-17 21:25:11.458 -07 000000610 INF: FPGA: Xmit ZDACW 28148\n [Z Motor]
17-03-17 21:25:11.458 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:25:11.468 -07 000000610 INF: FPGA: 'ZDACW 28148' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:25:11.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:11.468 -07 000000569 INF: FPGA: Recv ZDACR 28148
17-03-17 21:25:11.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:25:11.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29346
17-03-17 21:25:11.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:25:11.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.638 -07 000000458 INF: FPGA: Recv ZSGSRD 29354
17-03-17 21:25:11.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.648 -07 000000429 INF: FPGA: Recv ZSGSRD 29347
17-03-17 21:25:11.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.658 -07 000000431 INF: FPGA: Recv ZSGSRD 29351
17-03-17 21:25:11.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.668 -07 000000608 INF: FPGA: Recv ZSGSRD 29348
17-03-17 21:25:11.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.678 -07 000000547 INF: FPGA: Recv ZSGSRD 29348
17-03-17 21:25:11.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.688 -07 000000475 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:25:11.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29347
17-03-17 21:25:11.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.708 -07 000000431 INF: FPGA: Recv ZSGSRD 29347
17-03-17 21:25:11.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:11.718 -07 000000512 INF: FPGA: Recv ZSGSRD 29345
17-03-17 21:25:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:11.728 -07 000000547 INF: FPGA: Recv ZPIEZORD 25066
17-03-17 21:25:11.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:11.738 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.295 V. Piezo Error = -9.4 V.
17-03-17 21:25:11.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29348 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29348 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29345 (-128.1 uncal um), Max = 29354 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:25:11.738 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29348, posNoise = 6, negNoise = 3
17-03-17 21:25:11.738 -07 000000610 INF: Z Motor: After move to -0.128853, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:11.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:25:11.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:11.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:11.738 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:11.738 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:25:11.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:25:11.738 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:11.738 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:25:11.738 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:11.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:25:11.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:25:11.738 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:25:11.738 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:25:11.748 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:25:11.748 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:25:11.748 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:25:11.748 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:25:11.758 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:25:11.758 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:25:11.758 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:25:11.758 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:25:11.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28325 150\n [Camera]
17-03-17 21:25:11.878 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:11.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:25:12.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:25:12.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:25:12.388 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:12.388 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:12.388 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:25:12.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:25:12.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:25:12.388 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:12.388 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:12.388 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:25:12.578 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28325 816
17-03-17 21:25:12.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:25:12.768 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:25:12.768 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:25:12.768 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:12.768 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:25:12.768 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:25:12.768 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:12.778 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:25:12.778 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:25:12.778 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:25:12.788 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:25:12.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:12.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:12.938 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:12.938 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:12.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:25:12.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:12.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:12.938 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:12.938 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:12.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:25:13.128 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:25:13.128 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:13.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28325 150' command took 2 ms to send, 1367 ms to get response, and 1373 ms overall
17-03-17 21:25:13.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:25:13.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128861129947536. ------
17-03-17 21:25:13.138 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:13.138 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13539 mm
17-03-17 21:25:13.138 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:25:13.138 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:13.138 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:25:13.138 -07 000000431 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:25:13.138 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29577, sync = True, waitForSettling = False)
17-03-17 21:25:13.138 -07 000000569 INF: Z Motor: Moving to -0.135395 mm, started at -0.128861 mm, distance = -6.53 um
17-03-17 21:25:13.258 -07 000000569 INF: FPGA: Xmit ZDACW 29577\n [Z Motor]
17-03-17 21:25:13.258 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 21:25:13.258 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:25:13.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:13.268 -07 000000569 INF: FPGA: 'ZDACW 29577' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-17 21:25:13.268 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 21:25:13.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 133 ms overall
17-03-17 21:25:13.278 -07 000000431 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:13.278 -07 000000431 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:25:13.278 -07 000000431 INF: Y Motor: Moving 1348 steps-27
17-03-17 21:25:13.288 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:25:13.298 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:13.298 -07 000000626 INF: FPGA: Recv ZDACR 29577
17-03-17 21:25:13.308 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:25:13.308 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:25:13.308 -07 000000569 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-17 21:25:13.328 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:25:13.328 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:25:13.328 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:13.328 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:13.338 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:25:13.338 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:25:13.338 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:25:13.338 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:13.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:25:13.348 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:25:13.488 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:25:13.488 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 21:25:13.598 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.008536,
17-03-17 21:25:13.678 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:25:13.678 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-17 21:25:13.718 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:13.728 -07 000000476 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:25:13.728 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 21:25:13.728 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:13.728 -07 000000431 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:25:13.728 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.843 mm, average velocity = 2.092 mm/sec
17-03-17 21:25:14.678 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:14.678 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:25:14.688 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.688 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:14.708 -07 000000431 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:14.708 -07 000000431 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:25:14.708 -07 000000431 INF: Y Motor: Moved to 73.1763 after 1566 ms (table move)
17-03-17 21:25:14.708 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135395 mm (DAC = 29577)
17-03-17 21:25:14.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.718 -07 000000429 INF: FPGA: Recv ZSGSRD 30370
17-03-17 21:25:14.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:25:14.718 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.728 -07 000000480 INF: FPGA: Recv ZSGSRD 30365
17-03-17 21:25:14.728 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 21:25:14.728 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.728 -07 000000576 INF: FPGA: Recv ZSGSRD 30362
17-03-17 21:25:14.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:25:14.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.738 -07 000000415 INF: FPGA: Recv ZSGSRD 30371
17-03-17 21:25:14.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.748 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.748 -07 000000459 INF: FPGA: Recv ZSGSRD 30365
17-03-17 21:25:14.758 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.758 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.758 -07 000000429 INF: FPGA: Recv ZSGSRD 30370
17-03-17 21:25:14.768 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.768 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.768 -07 000000501 INF: FPGA: Recv ZSGSRD 30367
17-03-17 21:25:14.778 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.778 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.778 -07 000000382 INF: FPGA: Recv ZSGSRD 30367
17-03-17 21:25:14.788 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.788 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.788 -07 000000012 INF: FPGA: Recv ZSGSRD 30361
17-03-17 21:25:14.798 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.798 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:14.798 -07 000000382 INF: FPGA: Recv ZSGSRD 30366
17-03-17 21:25:14.808 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.808 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:14.808 -07 000000012 INF: FPGA: Recv ZPIEZORD 26439
17-03-17 21:25:14.818 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:14.818 -07 000000608 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.7 V.
17-03-17 21:25:14.818 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30366 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30366 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30361 (-134.6 uncal um), Max = 30371 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:25:14.818 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30366, posNoise = 5, negNoise = 5
17-03-17 21:25:14.818 -07 000000608 INF: Z Motor: After move to -0.135395, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:14.818 -07 000000608 INF: Z Motor: Settle wait time = 1571 ms, measure time = 102 ms (allowed 150 ms), total time = 1673 ms
17-03-17 21:25:14.818 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:25:14.868 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 21:25:14.868 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:25:14.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:14.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:14.868 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:14.868 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:25:14.868 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:14.868 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:14.868 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:14.868 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:25:14.878 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:25:14.878 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:25:14.878 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:25:14.878 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:25:14.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:25:14.928 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:25:15.128 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:25:15.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:25:15.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:25:15.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:25:15.168 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:25:15.168 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:25:15.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:25:15.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:25:15.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:15.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:25:15.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:25:15.268 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:15.268 -07 000000459 INF: Autofocus start
17-03-17 21:25:15.268 -07 000000459 INF: MeasureProfile start
17-03-17 21:25:15.268 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:15.278 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:25:15.278 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:25:15.278 -07 000000459 INF: MeasureProfile done
17-03-17 21:25:15.278 -07 000000459 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:25:15.278 -07 000000459 INF: Autofocus finished
17-03-17 21:25:15.478 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:25:15.478 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:25:15.478 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135400977907848. ----------
17-03-17 21:25:15.478 -07 000000610 INF: Cycle	50	Tile	17	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:25:15.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28101, sync = True, waitForSettling = True)
17-03-17 21:25:15.488 -07 000000610 INF: Z Motor: Moving to -0.128638 mm, started at -0.135401 mm, distance = 6.76 um
17-03-17 21:25:15.488 -07 000000610 INF: FPGA: Xmit ZDACW 28101\n [Z Motor]
17-03-17 21:25:15.488 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:25:15.498 -07 000000610 INF: FPGA: 'ZDACW 28101' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:25:15.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:15.498 -07 000000627 INF: FPGA: Recv ZDACR 28101
17-03-17 21:25:15.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:25:15.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.658 -07 000000476 INF: FPGA: Recv ZSGSRD 29316
17-03-17 21:25:15.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:25:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.668 -07 000000569 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:25:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.678 -07 000000012 INF: FPGA: Recv ZSGSRD 29313
17-03-17 21:25:15.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.688 -07 000000547 INF: FPGA: Recv ZSGSRD 29314
17-03-17 21:25:15.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29327
17-03-17 21:25:15.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.708 -07 000000429 INF: FPGA: Recv ZSGSRD 29319
17-03-17 21:25:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.718 -07 000000576 INF: FPGA: Recv ZSGSRD 29310
17-03-17 21:25:15.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29314
17-03-17 21:25:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.738 -07 000000512 INF: FPGA: Recv ZSGSRD 29317
17-03-17 21:25:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:15.748 -07 000000608 INF: FPGA: Recv ZSGSRD 29309
17-03-17 21:25:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:15.758 -07 000000476 INF: FPGA: Recv ZPIEZORD 25032
17-03-17 21:25:15.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:15.768 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.4 V.
17-03-17 21:25:15.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29314 (-127.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29306 (-127.8 uncal um), Max = 29327 (-128.0 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:25:15.768 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 13, negNoise = 8
17-03-17 21:25:15.768 -07 000000610 INF: Z Motor: After move to -0.128638, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:15.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:25:15.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:15.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:15.768 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:15.768 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:15.768 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:25:15.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:25:15.768 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:25:15.768 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:15.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:25:15.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:25:15.768 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:15.768 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:25:15.778 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:15.778 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:25:15.778 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:25:15.778 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:25:15.778 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:25:15.778 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:25:15.788 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:25:15.788 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:25:15.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28278 150\n [Camera]
17-03-17 21:25:15.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:25:16.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-17 21:25:16.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-17 21:25:16.418 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:16.428 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:16.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:25:16.428 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-17 21:25:16.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-17 21:25:16.428 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:16.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:16.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:25:16.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28278 816
17-03-17 21:25:16.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:25:16.818 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:25:16.818 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:25:16.818 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:16.828 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:16.828 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:25:16.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:25:16.828 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:25:16.828 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:16.828 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:16.838 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:25:16.878 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:16.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:16.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:16.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:16.968 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:16.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:16.968 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:16.978 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:16.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:25:16.978 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:16.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:25:17.158 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:25:17.158 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:17.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28278 150' command took 2 ms to send, 1365 ms to get response, and 1373 ms overall
17-03-17 21:25:17.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:25:17.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128642706734716. ------
17-03-17 21:25:17.168 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:17.278 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13504 mm
17-03-17 21:25:17.278 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:25:17.288 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:17.288 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 115 ms to send, 1 ms to get response, and 118 ms overall
17-03-17 21:25:17.288 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:25:17.288 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:25:17.288 -07 000000547 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:25:17.288 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29500, sync = True, waitForSettling = False)
17-03-17 21:25:17.288 -07 000000012 INF: Z Motor: Moving to -0.135042 mm, started at -0.128643 mm, distance = -6.40 um
17-03-17 21:25:17.298 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:17.298 -07 000000608 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:25:17.308 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:25:17.308 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:17.308 -07 000000547 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:25:17.308 -07 000000547 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:25:17.308 -07 000000012 INF: FPGA: Xmit ZDACW 29500\n [Z Motor]
17-03-17 21:25:17.308 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:25:17.318 -07 000000012 INF: FPGA: 'ZDACW 29500' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:25:17.318 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:17.318 -07 000000415 INF: FPGA: Recv ZDACR 29500
17-03-17 21:25:17.328 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:25:17.328 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:17.328 -07 000000012 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:25:17.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:25:17.368 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:25:17.368 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:17.378 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:17.378 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:25:17.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:25:17.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:25:17.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:17.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:17.388 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:25:17.488 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:25:17.488 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:25:17.698 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:25:17.698 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:25:17.728 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:17.738 -07 000000476 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:25:17.738 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:25:17.738 -07 000000547 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:17.738 -07 000000547 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:25:17.738 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 21:25:18.688 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:18.688 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:25:18.698 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.698 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:18.708 -07 000000547 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:18.708 -07 000000547 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:25:18.708 -07 000000547 INF: Y Motor: Moved to 74.0083 after 1424 ms (table move)
17-03-17 21:25:18.718 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135042 mm (DAC = 29500)
17-03-17 21:25:18.718 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.718 -07 000000608 INF: FPGA: Recv ZSGSRD 30312
17-03-17 21:25:18.728 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:25:18.728 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30306
17-03-17 21:25:18.738 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.738 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.738 -07 000000512 INF: FPGA: Recv ZSGSRD 30313
17-03-17 21:25:18.748 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.748 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.748 -07 000000012 INF: FPGA: Recv ZSGSRD 30309
17-03-17 21:25:18.758 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.758 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.758 -07 000000501 INF: FPGA: Recv ZSGSRD 30315
17-03-17 21:25:18.768 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.768 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.768 -07 000000626 INF: FPGA: Recv ZSGSRD 30316
17-03-17 21:25:18.778 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.778 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.778 -07 000000576 INF: FPGA: Recv ZSGSRD 30311
17-03-17 21:25:18.788 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.788 -07 000000512 INF: FPGA: Recv ZSGSRD 30309
17-03-17 21:25:18.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.798 -07 000000438 INF: FPGA: Recv ZSGSRD 30311
17-03-17 21:25:18.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:18.808 -07 000000501 INF: FPGA: Recv ZSGSRD 30307
17-03-17 21:25:18.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.818 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:18.818 -07 000000626 INF: FPGA: Recv ZPIEZORD 26329
17-03-17 21:25:18.828 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:18.828 -07 000000627 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -8.8 V.
17-03-17 21:25:18.828 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30311 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30311 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30306 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:25:18.828 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30311, posNoise = 5, negNoise = 5
17-03-17 21:25:18.828 -07 000000627 INF: Z Motor: After move to -0.135042, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:18.828 -07 000000627 INF: Z Motor: Settle wait time = 1428 ms, measure time = 109 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:25:18.828 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:25:18.878 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:25:18.878 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:25:18.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:18.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:18.878 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:18.878 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:18.878 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:25:18.878 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:18.878 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:18.878 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:25:18.888 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:18.888 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:25:18.898 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:25:18.898 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:25:18.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:25:18.948 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:25:18.968 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 4.008536,
17-03-17 21:25:19.148 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:25:19.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:25:19.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:25:19.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:25:19.188 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:25:19.188 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:25:19.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:25:19.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:25:19.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:19.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:25:19.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:25:19.288 -07 000000627 INF: Autofocus start
17-03-17 21:25:19.288 -07 000000627 INF: MeasureProfile start
17-03-17 21:25:19.298 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:19.298 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:19.298 -07 000000627 INF: MeasureProfile done
17-03-17 21:25:19.298 -07 000000627 INF: X=-22  Z correction [um]=-0.110495
17-03-17 21:25:19.298 -07 000000627 INF: Autofocus finished
17-03-17 21:25:19.308 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:25:19.318 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:25:19.518 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:25:19.518 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 21:25:19.528 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135047646240051. ----------
17-03-17 21:25:19.528 -07 000000610 INF: Cycle	50	Tile	18	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:25:19.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27988, sync = True, waitForSettling = True)
17-03-17 21:25:19.528 -07 000000610 INF: Z Motor: Moving to -0.128121 mm, started at -0.135048 mm, distance = 6.93 um
17-03-17 21:25:19.528 -07 000000610 INF: FPGA: Xmit ZDACW 27988\n [Z Motor]
17-03-17 21:25:19.528 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:25:19.538 -07 000000610 INF: FPGA: 'ZDACW 27988' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:25:19.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:19.538 -07 000000431 INF: FPGA: Recv ZDACR 27988
17-03-17 21:25:19.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:25:19.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.698 -07 000000382 INF: FPGA: Recv ZSGSRD 29235
17-03-17 21:25:19.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.708 -07 000000547 INF: FPGA: Recv ZSGSRD 29240
17-03-17 21:25:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.718 -07 000000415 INF: FPGA: Recv ZSGSRD 29228
17-03-17 21:25:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.728 -07 000000608 INF: FPGA: Recv ZSGSRD 29226
17-03-17 21:25:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.738 -07 000000512 INF: FPGA: Recv ZSGSRD 29236
17-03-17 21:25:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.748 -07 000000476 INF: FPGA: Recv ZSGSRD 29232
17-03-17 21:25:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29236
17-03-17 21:25:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29230
17-03-17 21:25:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.778 -07 000000608 INF: FPGA: Recv ZSGSRD 29231
17-03-17 21:25:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:19.788 -07 000000501 INF: FPGA: Recv ZSGSRD 29235
17-03-17 21:25:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:19.798 -07 000000458 INF: FPGA: Recv ZPIEZORD 24941
17-03-17 21:25:19.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:19.808 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.4 V.
17-03-17 21:25:19.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29233 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29226 (-127.3 uncal um), Max = 29240 (-127.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:25:19.808 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29233, posNoise = 7, negNoise = 7
17-03-17 21:25:19.808 -07 000000610 INF: Z Motor: After move to -0.128121, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:19.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:25:19.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:19.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:19.808 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:19.808 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:19.808 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:25:19.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:19.808 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:25:19.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:25:19.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:19.808 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:25:19.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:25:19.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:25:19.818 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:25:19.818 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:25:19.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:25:19.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:25:19.828 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:25:19.828 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:25:19.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:25:19.828 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:25:19.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28165 150\n [Camera]
17-03-17 21:25:20.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:25:20.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:25:20.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:25:20.458 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:25:20.458 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:20.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:25:20.468 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:20.468 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:20.468 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:25:20.468 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:20.468 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:25:20.648 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28165 816
17-03-17 21:25:20.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:25:20.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:25:20.838 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:25:20.838 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:20.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:20.848 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:25:20.848 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:25:20.848 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:20.848 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:20.848 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:25:20.848 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:25:21.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:21.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:21.008 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:21.008 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:21.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:25:21.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:21.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:21.018 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:21.018 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:21.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) start.
17-03-17 21:25:21.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:25:21.198 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:21.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28165 150' command took 2 ms to send, 1368 ms to get response, and 1372 ms overall
17-03-17 21:25:21.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:25:21.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128122345551233. ------
17-03-17 21:25:21.208 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:21.208 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13450 mm
17-03-17 21:25:21.208 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:25:21.208 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:25:21.208 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:25:21.208 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29382, sync = True, waitForSettling = False)
17-03-17 21:25:21.208 -07 000000424 INF: Z Motor: Moving to -0.134502 mm, started at -0.128122 mm, distance = -6.38 um
17-03-17 21:25:21.208 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:21.218 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:25:21.218 -07 000000424 INF: FPGA: Xmit ZDACW 29382\n [Z Motor]
17-03-17 21:25:21.218 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:25:21.228 -07 000000424 INF: FPGA: 'ZDACW 29382' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:25:21.228 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:21.228 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:25:21.238 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:25:21.238 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:25:21.238 -07 000000626 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:21.238 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:25:21.238 -07 000000626 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:25:21.248 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:21.248 -07 000000382 INF: FPGA: Recv ZDACR 29382
17-03-17 21:25:21.258 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:25:21.258 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:25:21.258 -07 000000424 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:25:21.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:25:21.418 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:25:21.418 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:21.418 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2367752976, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:25:21.418 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:25:21.418 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:21.418 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:25:21.418 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:25:21.418 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:25:21.428 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:25:21.438 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:25:21.438 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 6 ms to send, 198 ms to get response, and 228 ms overall
17-03-17 21:25:21.628 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:25:21.628 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:25:21.658 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:21.658 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:25:21.668 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:21.668 -07 000000626 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:21.668 -07 000000626 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:25:21.668 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.154 mm/sec
17-03-17 21:25:21.878 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:21.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 49. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:22.618 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:22.618 -07 000000438 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:25:22.628 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.628 -07 000000626 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:22.638 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:22.638 -07 000000626 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:25:22.638 -07 000000626 INF: Y Motor: Moved to 74.8325 after 1430 ms (table move)
17-03-17 21:25:22.648 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134502 mm (DAC = 29382)
17-03-17 21:25:22.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.648 -07 000000424 INF: FPGA: Recv ZSGSRD 30235
17-03-17 21:25:22.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.658 -07 000000480 INF: FPGA: Recv ZSGSRD 30225
17-03-17 21:25:22.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.668 -07 000000415 INF: FPGA: Recv ZSGSRD 30222
17-03-17 21:25:22.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.678 -07 000000431 INF: FPGA: Recv ZSGSRD 30222
17-03-17 21:25:22.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.688 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.688 -07 000000626 INF: FPGA: Recv ZSGSRD 30226
17-03-17 21:25:22.698 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.698 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.698 -07 000000424 INF: FPGA: Recv ZSGSRD 30232
17-03-17 21:25:22.708 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.708 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30230
17-03-17 21:25:22.718 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.718 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30227
17-03-17 21:25:22.728 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30226
17-03-17 21:25:22.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:22.738 -07 000000501 INF: FPGA: Recv ZSGSRD 30222
17-03-17 21:25:22.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.748 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:22.748 -07 000000012 INF: FPGA: Recv ZPIEZORD 26320
17-03-17 21:25:22.758 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:22.758 -07 000000476 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -8.6 V.
17-03-17 21:25:22.758 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30227 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30226 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30222 (-133.7 uncal um), Max = 30235 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:25:22.758 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30227, posNoise = 8, negNoise = 5
17-03-17 21:25:22.758 -07 000000476 INF: Z Motor: After move to -0.134502, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:22.758 -07 000000476 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:25:22.758 -07 000000476 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:25:22.808 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:25:22.808 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:25:22.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:22.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:22.808 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:22.808 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:25:22.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:22.808 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:22.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:25:22.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:25:22.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:25:22.818 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:25:22.818 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:25:22.818 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:25:22.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:25:22.868 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:25:23.068 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:25:23.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:25:23.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:25:23.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:25:23.108 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:25:23.108 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:25:23.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:25:23.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:25:23.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:23.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:25:23.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:25:23.208 -07 000000608 INF: Autofocus start
17-03-17 21:25:23.208 -07 000000608 INF: MeasureProfile start
17-03-17 21:25:23.208 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:25:23.208 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:25:23.218 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:25:23.218 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:25:23.218 -07 000000608 INF: MeasureProfile done
17-03-17 21:25:23.218 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:25:23.218 -07 000000608 INF: Autofocus finished
17-03-17 21:25:23.418 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:25:23.418 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 209 ms overall
17-03-17 21:25:23.428 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134508012420143. ----------
17-03-17 21:25:23.428 -07 000000610 INF: Cycle	50	Tile	19	Exposure Settings		A	431	G	207	T	207	C	431
17-03-17 21:25:23.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27906, sync = True, waitForSettling = True)
17-03-17 21:25:23.428 -07 000000610 INF: Z Motor: Moving to -0.127745 mm, started at -0.134508 mm, distance = 6.76 um
17-03-17 21:25:23.428 -07 000000610 INF: FPGA: Xmit ZDACW 27906\n [Z Motor]
17-03-17 21:25:23.428 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:25:23.438 -07 000000610 INF: FPGA: 'ZDACW 27906' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:25:23.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:25:23.438 -07 000000547 INF: FPGA: Recv ZDACR 27906
17-03-17 21:25:23.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:25:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.598 -07 000000429 INF: FPGA: Recv ZSGSRD 29170
17-03-17 21:25:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.608 -07 000000608 INF: FPGA: Recv ZSGSRD 29169
17-03-17 21:25:23.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.618 -07 000000512 INF: FPGA: Recv ZSGSRD 29172
17-03-17 21:25:23.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.628 -07 000000458 INF: FPGA: Recv ZSGSRD 29179
17-03-17 21:25:23.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.638 -07 000000547 INF: FPGA: Recv ZSGSRD 29176
17-03-17 21:25:23.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.648 -07 000000476 INF: FPGA: Recv ZSGSRD 29182
17-03-17 21:25:23.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.658 -07 000000459 INF: FPGA: Recv ZSGSRD 29172
17-03-17 21:25:23.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.668 -07 000000480 INF: FPGA: Recv ZSGSRD 29169
17-03-17 21:25:23.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.678 -07 000000476 INF: FPGA: Recv ZSGSRD 29175
17-03-17 21:25:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:25:23.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29176
17-03-17 21:25:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:25:23.698 -07 000000382 INF: FPGA: Recv ZPIEZORD 24921
17-03-17 21:25:23.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:23.708 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.3 V.
17-03-17 21:25:23.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29174 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29174 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29169 (-126.9 uncal um), Max = 29182 (-127.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:25:23.708 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29174, posNoise = 8, negNoise = 5
17-03-17 21:25:23.708 -07 000000610 INF: Z Motor: After move to -0.127745, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:25:23.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:25:23.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:25:23.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:25:23.708 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:25:23.708 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:25:23.708 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:25:23.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:25:23.708 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:25:23.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:25:23.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:25:23.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:25:23.708 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:25:23.708 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:25:23.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:25:23.708 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:25:23.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:25:23.718 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:25:23.718 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:25:23.718 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:25:23.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:25:23.728 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:25:23.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 431 431 207 207 28083 150\n [Camera]
17-03-17 21:25:23.928 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 21:25:24.338 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.985358,
17-03-17 21:25:24.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:25:24.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:25:24.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:24.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:24.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:25:24.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:25:24.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:25:24.368 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:24.368 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:24.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:25:24.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28083 816
17-03-17 21:25:24.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:25:24.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:25:24.758 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:25:24.758 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:24.758 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:24.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:25:24.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:25:24.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:25:24.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:24.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:24.768 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:25:24.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1173
17-03-17 21:25:24.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1173
17-03-17 21:25:24.908 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:25:24.908 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:25:24.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:25:24.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1173
17-03-17 21:25:24.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1173
17-03-17 21:25:24.918 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:25:24.918 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:25:24.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:25:25.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:25:25.098 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:25:25.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 431 431 207 207 28083 150' command took 2 ms to send, 1367 ms to get response, and 1373 ms overall
17-03-17 21:25:25.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:25:25.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:25:25.318 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:25.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:25:25.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:25:25.318 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:25:25.318 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:25:25.318 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:25:25.318 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:25:25.318 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:25:25.328 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:25:25.368 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:25:25.368 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:25:25.408 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:25:25.528 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 21:25:25.538 -07 000000610 INF: Imaging Cycle 50: ScanTilesCommand Cycle 50 time end. Duration was 159790 ms.
17-03-17 21:25:25.538 -07 000000610 INF: =================== Cycle #50 ===================
17-03-17 21:25:25.538 -07 000000610 INF: ===================  ===================
17-03-17 21:25:25.538 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:25:25.538 -07 000000512 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 21:25:25.548 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:25:25.548 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 21:25:25.548 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 50, FrontChillerTemperature: 3.985358, FrontChillerHeatSinkTemperature: 0.30705, AmbientTemperature: 19.03093, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.81677, GreenLEDSensorTemperature: 26.5625, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 21:25:25.578 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.