17-03-17 21:25:25.628 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:25:25.628 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:25:25.628 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:25:25.628 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:25.628 -07 000000458 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:25:25.638 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:25:25.638 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:25.638 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:25:25.638 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:25:25.638 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:25:25.748 -07 000000627 INF: FPGA: Recv YMVTO 154378 872
17-03-17 21:25:25.748 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:25:25.748 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 21:25:25.748 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 21:25:25.748 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 21:25:26.878 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:26.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:28.748 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:25:28.748 -07 000000012 INF: FPGA: Recv YRDPOS 154381
17-03-17 21:25:28.758 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:25:28.758 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:25:28.778 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:25:28.778 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:25:28.778 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3145 ms
17-03-17 21:25:28.778 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 60° ===================
17-03-17 21:25:28.778 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:25:28.778 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:25:28.788 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:25:28.788 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:25:28.788 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:25:28.788 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-17 21:25:28.798 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:25:28.798 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 60° ===================
17-03-17 21:25:28.798 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:25:28.798 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:25:28.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:25:28.818 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:25:28.818 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:25:28.818 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:25:29.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:25:29.138 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:25:29.138 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:25:29.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:25:29.208 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:25:29.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:25:29.308 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:25:29.308 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:25:29.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:29.338 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:25:29.338 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:25:29.338 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:25:29.468 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:25:29.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:29.708 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.979922,
17-03-17 21:25:31.878 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:31.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:32.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:32.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:33.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:33.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:33.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:33.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:33.568 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:25:33.568 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:25:33.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:33.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:25:33.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:25:33.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:33.888 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:25:33.888 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:25:33.888 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:25:34.018 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:25:34.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:34.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:34.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:34.508 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:25:34.508 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:25:35.088 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.98264,
17-03-17 21:25:35.728 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:25:35.728 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:25:35.728 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:25:35.748 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:25:35.748 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:25:35.748 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:25:35.878 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:25:35.898 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:25:35.898 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:25:35.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:25:35.968 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:25:35.968 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:25:36.068 -07 000000610 INF: =================== Cycle #51, Pumping Reagent CMS (4) ===================
17-03-17 21:25:36.068 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:25:36.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:36.098 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:25:36.098 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:25:36.098 -07 000000610 INF: =================== Cycle #51, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:25:36.228 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:25:36.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:36.878 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:36.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:37.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:37.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:38.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:38.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:38.188 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:25:38.188 -07 000000610 INF: =================== Cycle #51, Pumping Reagent CMS (4) ===================
17-03-17 21:25:38.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:38.348 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:25:38.348 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:25:38.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:38.508 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:25:38.508 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:25:38.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:25:38.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:25:38.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:39.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:39.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:39.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:25:39.128 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:25:40.348 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:25:40.348 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:25:40.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:25:40.368 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:25:40.368 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:25:40.368 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:25:40.448 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.001704,
17-03-17 21:25:40.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:25:40.538 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:25:40.538 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:25:40.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:25:40.608 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:25:40.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:25:40.708 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:25:40.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:25:40.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:40.738 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:25:40.738 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:25:40.738 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:25:40.868 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:25:40.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:41.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:41.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:41.808 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:25:41.808 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:25:41.878 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:41.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:41.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:41.968 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:25:41.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:25:42.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:42.128 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:25:42.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:25:42.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:25:42.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:25:42.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:42.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:42.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:42.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:25:42.748 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:25:42.748 -07 000000429 INF: WaitCommand(10000) start
17-03-17 21:25:42.748 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:25:42.748 -07 000000415 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:25:43.968 -07 000000415 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:25:43.968 -07 000000415 INF: LanePump: Xmit /1?\r
17-03-17 21:25:43.998 -07 000000415 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:25:43.998 -07 000000415 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:25:44.128 -07 000000415 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:25:44.168 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:45.698 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:45.728 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:45.818 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.016692,
17-03-17 21:25:46.148 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:46.178 -07 000000415 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:25:46.178 -07 000000415 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:25:46.178 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:25:46.178 -07 000000415 INF: ===================  ===================
17-03-17 21:25:46.878 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:46.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:51.188 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.014009,
17-03-17 21:25:51.878 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:51.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:52.758 -07 000000429 INF: WaitCommand(10000) end
17-03-17 21:25:52.758 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:25:52.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:25:52.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:25:52.798 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:25:52.798 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:25:52.798 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:25:52.928 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:25:52.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:56.558 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.011254,
17-03-17 21:25:56.878 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:25:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=757, R2=777, Total=1534. Warn if over 250 bubbles per interval.
17-03-17 21:25:59.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:59.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:59.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:25:59.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:25:59.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:00.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:00.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:00.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:00.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:00.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:00.928 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:26:00.928 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:26:01.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:01.088 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:26:01.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:26:01.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:01.248 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:26:01.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:26:01.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:26:01.378 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:26:01.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:01.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:01.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:01.868 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:26:01.868 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:26:01.878 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 6
17-03-17 21:26:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=6, R2=8, Total=14. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:01.928 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.012614,
17-03-17 21:26:03.088 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:26:03.088 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:26:03.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:26:03.108 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:26:03.108 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:26:03.108 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:26:03.318 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:26:03.338 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:26:03.338 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:26:03.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:26:03.408 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:26:03.408 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:26:03.508 -07 000000610 INF: =================== Cycle #51, Pumping Reagent IMT (1) ===================
17-03-17 21:26:03.508 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:26:03.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:03.538 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:26:03.538 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:26:03.538 -07 000000610 INF: =================== Cycle #51, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:26:03.668 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:26:03.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:05.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:05.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:05.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:05.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:05.628 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 21:26:05.628 -07 000000610 INF: =================== Cycle #51, Pumping Reagent IMT (1) ===================
17-03-17 21:26:05.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:05.788 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:26:05.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:26:05.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:05.948 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:26:05.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:26:05.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:26:06.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:26:06.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:06.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:06.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:06.568 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:26:06.568 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:26:06.878 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:07.298 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.023489,
17-03-17 21:26:07.788 -07 000000610 INF: AsyncDelayTimer waited 1220ms
17-03-17 21:26:07.788 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:26:07.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:26:07.808 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:26:07.808 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:26:07.808 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:26:08.038 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:26:08.058 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:26:08.058 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:26:08.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:26:08.128 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:26:08.128 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:26:08.228 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:26:08.228 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:26:08.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:08.258 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:26:08.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:26:08.258 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:26:08.388 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:26:08.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:09.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:09.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:09.328 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:26:09.328 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:26:09.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:09.488 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:26:09.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:26:09.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:09.648 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:26:09.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:26:09.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:26:09.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:26:09.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:10.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:10.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:10.268 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:26:10.268 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:26:10.268 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 65° ===================
17-03-17 21:26:10.268 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:26:10.268 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:26:10.268 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:26:10.278 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:26:10.278 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:26:10.278 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 21:26:10.288 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:26:10.288 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 65° ===================
17-03-17 21:26:10.288 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:26:10.288 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:26:11.878 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:12.678 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.008536,
17-03-17 21:26:16.878 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:18.038 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.997626,
17-03-17 21:26:21.878 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:21.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:23.408 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.983999,
17-03-17 21:26:26.878 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:26.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:28.778 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.978563,
17-03-17 21:26:31.878 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:31.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:34.158 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.977204,
17-03-17 21:26:36.878 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:36.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:39.518 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.99219,
17-03-17 21:26:40.298 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:26:40.298 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:26:40.298 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:26:40.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:40.428 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:26:40.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:26:40.428 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:26:40.558 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:26:40.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:41.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:41.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:41.168 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 21:26:41.168 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:26:41.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:41.328 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:26:41.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:26:41.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:26:41.488 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:26:41.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:26:41.488 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:26:41.618 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:26:41.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:41.878 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:41.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:42.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:42.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:42.108 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:26:42.108 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:26:42.108 -07 000000476 INF: WaitCommand(30000) start
17-03-17 21:26:42.108 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:26:42.108 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:26:43.328 -07 000000438 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:26:43.328 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 21:26:43.358 -07 000000438 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:26:43.358 -07 000000438 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:26:43.488 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:26:43.528 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:44.888 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.020806,
17-03-17 21:26:45.868 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:45.898 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:26:46.318 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 21:26:46.348 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:26:46.348 -07 000000438 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 21:26:46.348 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:26:46.348 -07 000000438 INF: ===================  ===================
17-03-17 21:26:46.878 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:46.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:50.258 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.009895,
17-03-17 21:26:51.878 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:51.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:26:55.628 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.009895,
17-03-17 21:26:56.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:26:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:00.998 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.02213,
17-03-17 21:27:01.878 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:06.368 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.990831,
17-03-17 21:27:06.878 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:11.738 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.96762,
17-03-17 21:27:11.878 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:12.118 -07 000000476 INF: WaitCommand(30000) end
17-03-17 21:27:12.118 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 22° ===================
17-03-17 21:27:12.118 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:27:12.118 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:27:12.128 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:27:12.128 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:27:12.128 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:27:12.128 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-17 21:27:12.138 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:12.138 -07 000000610 INF: =================== Cycle #51, Flow Cell Temp 22° ===================
17-03-17 21:27:12.138 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:27:12.138 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:27:12.138 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:27:12.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:12.168 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:27:12.168 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:27:12.168 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:27:12.298 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:27:12.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:15.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:15.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:15.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:15.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:16.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:16.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:16.398 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:27:16.398 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:27:16.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:16.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:27:16.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:27:16.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:16.718 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:27:16.718 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:27:16.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:27:16.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:27:16.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:16.878 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:17.108 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.985358,
17-03-17 21:27:17.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:17.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:17.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:27:17.338 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:27:18.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:27:18.558 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:27:18.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:27:18.578 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:27:18.578 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:27:18.578 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:27:18.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:27:18.748 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:27:18.748 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:27:18.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:27:18.818 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:27:18.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:27:18.918 -07 000000610 INF: =================== Cycle #51, Pumping Reagent USM (2) ===================
17-03-17 21:27:18.918 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:27:18.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:18.948 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:27:18.948 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:27:18.948 -07 000000610 INF: =================== Cycle #51, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:27:19.078 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:27:19.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:20.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:20.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:21.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:21.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:21.038 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 21:27:21.038 -07 000000610 INF: =================== Cycle #51, Pumping Reagent USM (2) ===================
17-03-17 21:27:21.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:21.198 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:27:21.198 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:27:21.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:21.358 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:27:21.358 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:27:21.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:27:21.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:27:21.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:21.878 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:21.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:21.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:21.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:21.978 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:27:21.978 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:27:22.488 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.99219,
17-03-17 21:27:23.198 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:27:23.198 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:27:23.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:27:23.218 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:27:23.218 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:27:23.218 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:27:23.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:27:23.388 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:27:23.388 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:27:23.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:27:23.458 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:27:23.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:27:23.558 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:27:23.558 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:27:23.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:23.588 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:27:23.588 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:27:23.588 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:27:23.718 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:27:23.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:24.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:24.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:24.658 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:27:24.658 -07 000000610 INF: =================== Cycle #51, Pumping Reagent PR2 (3) ===================
17-03-17 21:27:24.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:24.818 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:27:24.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:27:24.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:27:24.978 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:27:24.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:27:24.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:27:25.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:27:25.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:25.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:25.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:25.598 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:27:25.598 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:27:25.598 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:27:25.598 -07 000000608 INF: WaitCommand(10000) start
17-03-17 21:27:25.598 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:27:26.818 -07 000000459 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:27:26.818 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 21:27:26.848 -07 000000459 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:27:26.848 -07 000000459 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:27:26.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:26.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:26.978 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:27:27.018 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:27.848 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.971733,
17-03-17 21:27:28.548 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:28.578 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:27:28.998 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 21:27:29.028 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:27:29.028 -07 000000459 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:27:29.028 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:27:29.028 -07 000000459 INF: ===================  ===================
17-03-17 21:27:31.878 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:31.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:33.218 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.004458,
17-03-17 21:27:35.608 -07 000000608 INF: WaitCommand(10000) end
17-03-17 21:27:35.608 -07 000000610 INF: =================== Cycle #51, Imaging ===================
17-03-17 21:27:35.608 -07 000000610 INF: Imaging Cycle 51: ScanTilesCommand Cycle 51 time start.
17-03-17 21:27:35.608 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:27:35.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:27:35.638 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:27:35.638 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:27:35.638 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:27:35.938 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:27:35.958 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:27:35.958 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:27:36.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:27:36.028 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:27:36.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:36.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:36.028 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:27:36.028 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:36.028 -07 000000569 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:27:36.028 -07 000000512 INF: FPGA: Recv EXLED1ON 
17-03-17 21:27:36.038 -07 000000569 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:27:36.038 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:27:36.038 -07 000000012 INF: FPGA: Recv EXLED1ADCR 23172
17-03-17 21:27:36.048 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:36.048 -07 000000569 INF: RedLED: Using Red data: Photodiode ADC 23172 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 197.9 mW
17-03-17 21:27:36.048 -07 000000569 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:27:36.048 -07 000000547 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:27:36.058 -07 000000569 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:36.058 -07 000000569 INF: RedLED: LED was on for 20 ms
17-03-17 21:27:36.058 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 21:27:36.058 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:27:36.058 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:36.058 -07 000000569 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:27:36.058 -07 000000480 INF: FPGA: Recv EXLED2ON 
17-03-17 21:27:36.068 -07 000000569 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:36.068 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:27:36.068 -07 000000476 INF: FPGA: Recv EXLED1ADCR 2097
17-03-17 21:27:36.078 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:36.078 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-17 21:27:36.078 -07 000000569 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:27:36.078 -07 000000012 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:27:36.088 -07 000000569 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:27:36.088 -07 000000569 INF: GreenLED: LED was on for 19 ms
17-03-17 21:27:36.088 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:27:36.088 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:27:36.088 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 21:27:36.098 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:36.098 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:27:36.598 -07 000000627 INF: FPGA: Recv EMOUT
17-03-17 21:27:36.598 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:27:36.598 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:27:36.598 -07 000000431 INF: FPGA: Recv EMCUR 
17-03-17 21:27:36.608 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:36.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:27:36.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127743317034869. ------
17-03-17 21:27:36.608 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:36.608 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17960 mm
17-03-17 21:27:36.608 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:27:36.608 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:36.608 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39234, sync = True, waitForSettling = False)
17-03-17 21:27:36.608 -07 000000512 INF: Z Motor: Moving to -0.179602 mm, started at -0.127743 mm, distance = -51.86 um
17-03-17 21:27:36.618 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:27:36.618 -07 000000512 INF: FPGA: Xmit ZDACW 39234\n [Z Motor]
17-03-17 21:27:36.618 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:27:36.618 -07 000000415 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 21:27:36.618 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:27:36.628 -07 000000512 INF: FPGA: 'ZDACW 39234' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:36.628 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:36.628 -07 000000547 INF: FPGA: Recv YRDPOS 154381
17-03-17 21:27:36.638 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:27:36.638 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:27:36.638 -07 000000415 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:36.638 -07 000000415 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:27:36.638 -07 000000415 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:27:36.648 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:36.648 -07 000000576 INF: FPGA: Recv ZDACR 39234
17-03-17 21:27:36.658 -07 000000415 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:27:36.658 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:27:36.658 -07 000000512 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:27:36.838 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:27:36.838 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:27:36.878 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:36.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:38.338 -07 000000459 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 21:27:38.338 -07 000000415 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 21:27:38.338 -07 000000415 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:27:38.338 -07 000000415 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 21:27:38.338 -07 000000415 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.469 mm, average velocity = 9.073 mm/sec
17-03-17 21:27:38.588 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.012614,
17-03-17 21:27:41.188 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:41.188 -07 000000459 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:27:41.198 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:41.198 -07 000000415 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:41.218 -07 000000415 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:27:41.218 -07 000000415 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:27:41.218 -07 000000415 INF: Y Motor: Moved to 59.9106 after 4602 ms
17-03-17 21:27:41.218 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179602 mm (DAC = 39234)
17-03-17 21:27:41.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.228 -07 000000424 INF: FPGA: Recv ZSGSRD 37248
17-03-17 21:27:41.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:27:41.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.228 -07 000000626 INF: FPGA: Recv ZSGSRD 37253
17-03-17 21:27:41.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:41.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.238 -07 000000608 INF: FPGA: Recv ZSGSRD 37249
17-03-17 21:27:41.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.248 -07 000000431 INF: FPGA: Recv ZSGSRD 37248
17-03-17 21:27:41.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.258 -07 000000012 INF: FPGA: Recv ZSGSRD 37246
17-03-17 21:27:41.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.268 -07 000000458 INF: FPGA: Recv ZSGSRD 37242
17-03-17 21:27:41.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.278 -07 000000480 INF: FPGA: Recv ZSGSRD 37252
17-03-17 21:27:41.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.288 -07 000000608 INF: FPGA: Recv ZSGSRD 37246
17-03-17 21:27:41.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.298 -07 000000438 INF: FPGA: Recv ZSGSRD 37246
17-03-17 21:27:41.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:41.308 -07 000000569 INF: FPGA: Recv ZSGSRD 37248
17-03-17 21:27:41.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.318 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:41.318 -07 000000424 INF: FPGA: Recv ZPIEZORD 33751
17-03-17 21:27:41.328 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:41.328 -07 000000501 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.987 V. Piezo Error = -7.8 V.
17-03-17 21:27:41.328 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37248 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37248 (-178.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37242 (-178.7 uncal um), Max = 37253 (-178.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:27:41.328 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37248, posNoise = 5, negNoise = 6
17-03-17 21:27:41.328 -07 000000501 INF: Z Motor: After move to -0.179602, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:41.328 -07 000000501 INF: Z Motor: Settle wait time = 4609 ms, measure time = 102 ms (allowed 150 ms), total time = 4711 ms
17-03-17 21:27:41.328 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:27:41.378 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-17 21:27:41.378 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:27:41.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:41.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:41.378 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:41.378 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:41.378 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:27:41.378 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:41.378 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:27:41.378 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:27:41.408 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:27:41.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:27:41.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:27:41.408 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:27:41.428 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:27:41.428 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 21:27:41.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:27:41.468 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:27:41.668 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:27:41.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:27:41.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:27:41.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:27:41.708 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:27:41.708 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:27:41.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:27:41.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:27:41.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:41.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:27:41.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:27:41.878 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:41.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:41.908 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:41.908 -07 000000627 INF: Image SNR check: start
17-03-17 21:27:41.908 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:41.918 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:41.918 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:27:41.918 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=63.75]
17-03-17 21:27:41.918 -07 000000627 INF: Autofocus start
17-03-17 21:27:41.918 -07 000000627 INF: MeasureProfile start
17-03-17 21:27:41.928 -07 000000627 INF: MeasureProfile done
17-03-17 21:27:41.928 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:27:41.928 -07 000000627 INF: Autofocus finished
17-03-17 21:27:42.118 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:27:42.118 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:27:42.118 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179612405867447. ----------
17-03-17 21:27:42.118 -07 000000610 INF: Cycle	51	Tile	1	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:27:42.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37749, sync = True, waitForSettling = True)
17-03-17 21:27:42.128 -07 000000610 INF: Z Motor: Moving to -0.172804 mm, started at -0.179612 mm, distance = 6.81 um
17-03-17 21:27:42.128 -07 000000610 INF: FPGA: Xmit ZDACW 37749\n [Z Motor]
17-03-17 21:27:42.128 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:27:42.138 -07 000000610 INF: FPGA: 'ZDACW 37749' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:42.138 -07 000000424 INF: FPGA: Recv ZDACR 37749
17-03-17 21:27:42.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:27:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.298 -07 000000415 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:27:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:42.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.308 -07 000000438 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:27:42.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:27:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.328 -07 000000475 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:27:42.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.338 -07 000000626 INF: FPGA: Recv ZSGSRD 36193
17-03-17 21:27:42.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.348 -07 000000431 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:27:42.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:27:42.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:27:42.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.378 -07 000000415 INF: FPGA: Recv ZSGSRD 36197
17-03-17 21:27:42.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:42.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:42.388 -07 000000576 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:27:42.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:42.398 -07 000000512 INF: FPGA: Recv ZPIEZORD 32322
17-03-17 21:27:42.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:42.408 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.6 V.
17-03-17 21:27:42.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36191 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36190 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36186 (-171.9 uncal um), Max = 36197 (-172.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:27:42.408 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36191, posNoise = 6, negNoise = 5
17-03-17 21:27:42.408 -07 000000610 INF: Z Motor: After move to -0.172804, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:42.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:27:42.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:42.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:42.408 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:42.408 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:42.408 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:27:42.408 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:42.408 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:27:42.408 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:27:42.408 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:42.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:27:42.408 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:27:42.408 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:27:42.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:42.408 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:27:42.428 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:27:42.428 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:27:42.428 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:27:42.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:27:42.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:27:42.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:27:42.448 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:27:42.448 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 21:27:42.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37925 150\n [Camera]
17-03-17 21:27:42.648 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:27:43.078 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:27:43.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:27:43.088 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:43.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:27:43.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:27:43.088 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:43.088 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:43.088 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:27:43.098 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:43.098 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:27:43.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37925 820
17-03-17 21:27:43.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:27:43.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:27:43.478 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:27:43.478 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:43.488 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:43.488 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:27:43.488 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:27:43.488 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:27:43.488 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:43.488 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:43.498 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:27:43.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:27:43.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:27:43.638 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:43.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:27:43.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:27:43.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:43.758 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:43.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:27:43.758 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:43.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:27:43.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:27:43.828 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:27:43.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37925 150' command took 2 ms to send, 1362 ms to get response, and 1374 ms overall
17-03-17 21:27:43.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:27:43.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172822013633606. ------
17-03-17 21:27:43.828 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:43.828 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17912 mm
17-03-17 21:27:43.828 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:27:43.838 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:43.838 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:27:43.838 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:27:43.838 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:43.838 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 39128, sync = True, waitForSettling = False)
17-03-17 21:27:43.838 -07 000000382 INF: Z Motor: Moving to -0.179117 mm, started at -0.172822 mm, distance = -6.29 um
17-03-17 21:27:43.838 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:27:43.838 -07 000000608 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:27:43.848 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:43.848 -07 000000382 INF: FPGA: Xmit ZDACW 39128\n [Z Motor]
17-03-17 21:27:43.848 -07 000000431 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:43.848 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:27:43.848 -07 000000431 INF: Y Motor: Moving 1331 steps2
17-03-17 21:27:43.848 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:27:43.858 -07 000000382 INF: FPGA: 'ZDACW 39128' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:27:43.858 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:27:43.868 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:27:43.878 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:43.878 -07 000000626 INF: FPGA: Recv ZDACR 39128
17-03-17 21:27:43.888 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:27:43.888 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:27:44.058 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:27:44.058 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 223 ms overall
17-03-17 21:27:44.068 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.000345,
17-03-17 21:27:44.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:27:44.148 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:27:44.148 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:44.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:27:44.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:27:44.158 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:44.158 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:44.158 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 21:27:44.158 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:44.168 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 21:27:44.238 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:27:44.238 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:27:44.268 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:44.278 -07 000000626 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:27:44.278 -07 000000431 INF: FPGA: 'YRDPOS' command took 1 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:27:44.278 -07 000000431 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:44.278 -07 000000431 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:27:44.278 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 21:27:45.228 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:45.228 -07 000000382 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:27:45.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:45.238 -07 000000431 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:45.268 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:27:45.268 -07 000000431 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:27:45.268 -07 000000431 INF: Y Motor: Moved to 60.7324 after 1429 ms (table move)
17-03-17 21:27:45.268 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179117 mm (DAC = 39128)
17-03-17 21:27:45.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.268 -07 000000475 INF: FPGA: Recv ZSGSRD 37168
17-03-17 21:27:45.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:27:45.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.278 -07 000000382 INF: FPGA: Recv ZSGSRD 37165
17-03-17 21:27:45.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.288 -07 000000627 INF: FPGA: Recv ZSGSRD 37178
17-03-17 21:27:45.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.298 -07 000000458 INF: FPGA: Recv ZSGSRD 37174
17-03-17 21:27:45.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.308 -07 000000459 INF: FPGA: Recv ZSGSRD 37173
17-03-17 21:27:45.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.318 -07 000000547 INF: FPGA: Recv ZSGSRD 37175
17-03-17 21:27:45.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.328 -07 000000382 INF: FPGA: Recv ZSGSRD 37173
17-03-17 21:27:45.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.338 -07 000000512 INF: FPGA: Recv ZSGSRD 37167
17-03-17 21:27:45.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.348 -07 000000458 INF: FPGA: Recv ZSGSRD 37163
17-03-17 21:27:45.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:45.358 -07 000000459 INF: FPGA: Recv ZSGSRD 37169
17-03-17 21:27:45.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.368 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:45.368 -07 000000547 INF: FPGA: Recv ZPIEZORD 33671
17-03-17 21:27:45.378 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:45.378 -07 000000012 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.971 V. Piezo Error = -7.8 V.
17-03-17 21:27:45.378 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37170 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37171 (-178.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37163 (-178.2 uncal um), Max = 37178 (-178.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:27:45.378 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37170, posNoise = 8, negNoise = 7
17-03-17 21:27:45.378 -07 000000012 INF: Z Motor: After move to -0.179117, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:45.378 -07 000000012 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:27:45.378 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:27:45.428 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:27:45.428 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:27:45.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:45.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:45.428 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:45.428 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:45.428 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:27:45.428 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:45.428 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:45.428 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:27:45.438 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:27:45.438 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:27:45.448 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:27:45.448 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:27:45.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:27:45.498 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:27:45.698 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:27:45.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:27:45.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:27:45.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:27:45.738 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:27:45.738 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:27:45.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:27:45.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:27:45.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:45.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:27:45.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:27:45.838 -07 000000476 INF: Autofocus start
17-03-17 21:27:45.838 -07 000000476 INF: MeasureProfile start
17-03-17 21:27:45.838 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:45.838 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:45.848 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:45.848 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:27:45.848 -07 000000476 INF: MeasureProfile done
17-03-17 21:27:45.848 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:27:45.848 -07 000000476 INF: Autofocus finished
17-03-17 21:27:46.048 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:27:46.048 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:27:46.048 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.17911131732039. ----------
17-03-17 21:27:46.048 -07 000000610 INF: Cycle	51	Tile	2	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:27:46.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37643, sync = True, waitForSettling = True)
17-03-17 21:27:46.058 -07 000000610 INF: Z Motor: Moving to -0.172319 mm, started at -0.179111 mm, distance = 6.79 um
17-03-17 21:27:46.058 -07 000000610 INF: FPGA: Xmit ZDACW 37643\n [Z Motor]
17-03-17 21:27:46.058 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:27:46.068 -07 000000610 INF: FPGA: 'ZDACW 37643' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:46.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:46.068 -07 000000458 INF: FPGA: Recv ZDACR 37643
17-03-17 21:27:46.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:27:46.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36113
17-03-17 21:27:46.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:46.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.238 -07 000000475 INF: FPGA: Recv ZSGSRD 36114
17-03-17 21:27:46.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.248 -07 000000012 INF: FPGA: Recv ZSGSRD 36118
17-03-17 21:27:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36116
17-03-17 21:27:46.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.268 -07 000000458 INF: FPGA: Recv ZSGSRD 36113
17-03-17 21:27:46.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.278 -07 000000415 INF: FPGA: Recv ZSGSRD 36112
17-03-17 21:27:46.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36113
17-03-17 21:27:46.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.298 -07 000000569 INF: FPGA: Recv ZSGSRD 36119
17-03-17 21:27:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36110
17-03-17 21:27:46.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:46.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:27:46.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:46.328 -07 000000415 INF: FPGA: Recv ZPIEZORD 32225
17-03-17 21:27:46.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:46.338 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.744 V. Piezo Error = -8.6 V.
17-03-17 21:27:46.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36114 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36113 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36107 (-171.4 uncal um), Max = 36119 (-171.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:27:46.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36114, posNoise = 5, negNoise = 7
17-03-17 21:27:46.338 -07 000000610 INF: Z Motor: After move to -0.172319, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:46.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:27:46.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:46.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:46.338 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:46.338 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:46.338 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:27:46.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:46.338 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:27:46.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:27:46.338 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:46.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:27:46.338 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:27:46.338 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:27:46.348 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:46.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:27:46.348 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:27:46.348 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:27:46.358 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:27:46.358 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:27:46.358 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:27:46.358 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:27:46.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37820 150\n [Camera]
17-03-17 21:27:46.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:27:46.878 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:46.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:46.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:27:46.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:27:46.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:46.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:46.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 21:27:46.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:27:46.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:27:46.998 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:46.998 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:46.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:27:47.188 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37820 817
17-03-17 21:27:47.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:27:47.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:27:47.398 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:27:47.398 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:47.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:27:47.408 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:27:47.408 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:47.408 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:47.408 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:27:47.408 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:47.418 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:27:47.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:27:47.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:27:47.548 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:47.548 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:47.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:27:47.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:27:47.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:27:47.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:47.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:47.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:27:47.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:27:47.738 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:27:47.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37820 150' command took 2 ms to send, 1368 ms to get response, and 1377 ms overall
17-03-17 21:27:47.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:27:47.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.17232734929869. ------
17-03-17 21:27:47.858 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:47.858 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17858 mm
17-03-17 21:27:47.858 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:27:47.858 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:47.858 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 39010, sync = True, waitForSettling = False)
17-03-17 21:27:47.858 -07 000000476 INF: Z Motor: Moving to -0.178576 mm, started at -0.172327 mm, distance = -6.25 um
17-03-17 21:27:47.858 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:27:47.858 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:27:47.868 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:27:47.868 -07 000000476 INF: FPGA: Xmit ZDACW 39010\n [Z Motor]
17-03-17 21:27:47.868 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:27:47.878 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:47.878 -07 000000476 INF: FPGA: 'ZDACW 39010' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:27:47.878 -07 000000475 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:27:47.888 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:27:47.888 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:47.888 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:27:47.888 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:27:47.888 -07 000000576 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:27:47.898 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:47.898 -07 000000512 INF: FPGA: Recv ZDACR 39010
17-03-17 21:27:47.908 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:27:47.908 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:27:47.908 -07 000000476 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:27:47.938 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:27:47.938 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:27:47.938 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:47.938 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:47.938 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:27:47.938 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:27:47.938 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:47.948 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:27:47.948 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:27:47.948 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:27:48.088 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:27:48.088 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:27:48.278 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:27:48.278 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:27:48.318 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:48.318 -07 000000458 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:27:48.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:27:48.328 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:48.328 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:27:48.328 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 21:27:49.278 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:49.278 -07 000000626 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:27:49.288 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:49.288 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:49.308 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:27:49.308 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:27:49.308 -07 000000576 INF: Y Motor: Moved to 61.5635 after 1448 ms (table move)
17-03-17 21:27:49.308 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178576 mm (DAC = 39010)
17-03-17 21:27:49.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.318 -07 000000429 INF: FPGA: Recv ZSGSRD 37091
17-03-17 21:27:49.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:27:49.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.318 -07 000000475 INF: FPGA: Recv ZSGSRD 37092
17-03-17 21:27:49.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:49.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.328 -07 000000431 INF: FPGA: Recv ZSGSRD 37091
17-03-17 21:27:49.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.338 -07 000000512 INF: FPGA: Recv ZSGSRD 37084
17-03-17 21:27:49.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.348 -07 000000382 INF: FPGA: Recv ZSGSRD 37092
17-03-17 21:27:49.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.358 -07 000000415 INF: FPGA: Recv ZSGSRD 37096
17-03-17 21:27:49.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.368 -07 000000459 INF: FPGA: Recv ZSGSRD 37085
17-03-17 21:27:49.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.378 -07 000000012 INF: FPGA: Recv ZSGSRD 37087
17-03-17 21:27:49.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.388 -07 000000429 INF: FPGA: Recv ZSGSRD 37078
17-03-17 21:27:49.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:49.398 -07 000000626 INF: FPGA: Recv ZSGSRD 37081
17-03-17 21:27:49.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.408 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:49.408 -07 000000431 INF: FPGA: Recv ZPIEZORD 33547
17-03-17 21:27:49.418 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:49.418 -07 000000547 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.953 V. Piezo Error = -7.9 V.
17-03-17 21:27:49.418 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37088 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37089 (-177.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37078 (-177.6 uncal um), Max = 37096 (-177.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:27:49.418 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37088, posNoise = 8, negNoise = 10
17-03-17 21:27:49.418 -07 000000547 INF: Z Motor: After move to -0.178576, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:49.418 -07 000000547 INF: Z Motor: Settle wait time = 1453 ms, measure time = 101 ms (allowed 150 ms), total time = 1554 ms
17-03-17 21:27:49.418 -07 000000547 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:27:49.428 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.986717,
17-03-17 21:27:49.468 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 21:27:49.468 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:27:49.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:49.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:49.468 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:49.468 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:49.468 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:27:49.468 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:49.468 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:49.468 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:27:49.478 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:49.478 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:27:49.488 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:27:49.488 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:27:49.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:27:49.528 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:27:49.728 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:27:49.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:27:49.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:27:49.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:27:49.768 -07 000000431 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:27:49.778 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:27:49.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:27:49.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:27:49.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:49.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:27:49.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:27:49.878 -07 000000429 INF: Autofocus start
17-03-17 21:27:49.878 -07 000000429 INF: MeasureProfile start
17-03-17 21:27:49.878 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:49.878 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:49.888 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:49.888 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:27:49.888 -07 000000429 INF: MeasureProfile done
17-03-17 21:27:49.888 -07 000000429 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:27:49.888 -07 000000429 INF: Autofocus finished
17-03-17 21:27:50.088 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:27:50.088 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:27:50.088 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178584531924765. ----------
17-03-17 21:27:50.088 -07 000000610 INF: Cycle	51	Tile	3	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:27:50.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37490, sync = True, waitForSettling = True)
17-03-17 21:27:50.098 -07 000000610 INF: Z Motor: Moving to -0.171618 mm, started at -0.178585 mm, distance = 6.97 um
17-03-17 21:27:50.098 -07 000000610 INF: FPGA: Xmit ZDACW 37490\n [Z Motor]
17-03-17 21:27:50.098 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:27:50.108 -07 000000610 INF: FPGA: 'ZDACW 37490' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:50.108 -07 000000501 INF: FPGA: Recv ZDACR 37490
17-03-17 21:27:50.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:27:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.268 -07 000000547 INF: FPGA: Recv ZSGSRD 36008
17-03-17 21:27:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:50.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.278 -07 000000608 INF: FPGA: Recv ZSGSRD 36000
17-03-17 21:27:50.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36004
17-03-17 21:27:50.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36008
17-03-17 21:27:50.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36012
17-03-17 21:27:50.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36004
17-03-17 21:27:50.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.328 -07 000000431 INF: FPGA: Recv ZSGSRD 36008
17-03-17 21:27:50.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.338 -07 000000415 INF: FPGA: Recv ZSGSRD 36006
17-03-17 21:27:50.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.348 -07 000000627 INF: FPGA: Recv ZSGSRD 36006
17-03-17 21:27:50.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:50.358 -07 000000547 INF: FPGA: Recv ZSGSRD 36002
17-03-17 21:27:50.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:50.368 -07 000000480 INF: FPGA: Recv ZPIEZORD 32105
17-03-17 21:27:50.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:50.378 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -8.6 V.
17-03-17 21:27:50.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36006 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36006 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36000 (-170.7 uncal um), Max = 36012 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:27:50.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36006, posNoise = 6, negNoise = 6
17-03-17 21:27:50.378 -07 000000610 INF: Z Motor: After move to -0.171618, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:50.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:27:50.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:50.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:50.378 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:27:50.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:50.378 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:50.378 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:50.378 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:27:50.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:27:50.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:50.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:27:50.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:27:50.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:27:50.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:50.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:27:50.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:27:50.378 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:27:50.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:27:50.388 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:27:50.388 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:27:50.388 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:27:50.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37667 150\n [Camera]
17-03-17 21:27:50.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:27:51.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:27:51.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:27:51.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:51.028 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:27:51.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:27:51.028 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:51.038 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:51.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:27:51.038 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:51.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:27:51.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37667 817
17-03-17 21:27:51.378 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 970
17-03-17 21:27:51.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:27:51.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:27:51.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:51.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:27:51.408 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:27:51.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:51.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:51.418 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:51.418 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:27:51.418 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:27:51.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1177
17-03-17 21:27:51.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1177
17-03-17 21:27:51.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:51.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1177
17-03-17 21:27:51.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1177
17-03-17 21:27:51.588 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:51.588 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:51.588 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:27:51.588 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:51.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:27:51.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:27:51.778 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:27:51.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37667 150' command took 2 ms to send, 1371 ms to get response, and 1377 ms overall
17-03-17 21:27:51.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:27:51.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.17163353438738. ------
17-03-17 21:27:51.778 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17793 mm
17-03-17 21:27:51.778 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:27:51.778 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:51.788 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38869, sync = True, waitForSettling = False)
17-03-17 21:27:51.788 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:27:51.788 -07 000000429 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:27:51.788 -07 000000626 INF: Z Motor: Moving to -0.177931 mm, started at -0.171634 mm, distance = -6.30 um
17-03-17 21:27:51.788 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:51.798 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:51.798 -07 000000626 INF: FPGA: Xmit ZDACW 38869\n [Z Motor]
17-03-17 21:27:51.798 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:27:51.808 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:51.808 -07 000000626 INF: FPGA: 'ZDACW 38869' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:27:51.808 -07 000000608 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:27:51.818 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:27:51.818 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:27:51.818 -07 000000429 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:51.818 -07 000000429 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:27:51.818 -07 000000429 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:27:51.828 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:51.828 -07 000000627 INF: FPGA: Recv ZDACR 38869
17-03-17 21:27:51.838 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:27:51.838 -07 000000626 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:27:51.838 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:27:51.878 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:51.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:51.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:27:51.978 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:27:51.978 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:51.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:27:51.978 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:27:51.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:51.978 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:51.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:27:51.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:27:51.988 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:27:52.018 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:27:52.018 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:27:52.208 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:27:52.208 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:27:52.248 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:52.248 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:27:52.258 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:27:52.258 -07 000000429 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:52.258 -07 000000429 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:27:52.258 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:27:53.208 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:53.208 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:27:53.218 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:53.218 -07 000000429 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:53.238 -07 000000429 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:27:53.238 -07 000000429 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:27:53.238 -07 000000429 INF: Y Motor: Moved to 62.3950 after 1450 ms (table move)
17-03-17 21:27:53.238 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177931 mm (DAC = 38869)
17-03-17 21:27:53.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.248 -07 000000626 INF: FPGA: Recv ZSGSRD 36993
17-03-17 21:27:53.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:27:53.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.248 -07 000000608 INF: FPGA: Recv ZSGSRD 36993
17-03-17 21:27:53.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36990
17-03-17 21:27:53.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.268 -07 000000438 INF: FPGA: Recv ZSGSRD 36988
17-03-17 21:27:53.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36997
17-03-17 21:27:53.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36987
17-03-17 21:27:53.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.298 -07 000000480 INF: FPGA: Recv ZSGSRD 36983
17-03-17 21:27:53.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.308 -07 000000458 INF: FPGA: Recv ZSGSRD 36982
17-03-17 21:27:53.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36987
17-03-17 21:27:53.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:53.328 -07 000000569 INF: FPGA: Recv ZSGSRD 36991
17-03-17 21:27:53.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.338 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:53.338 -07 000000627 INF: FPGA: Recv ZPIEZORD 33408
17-03-17 21:27:53.348 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:53.348 -07 000000012 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -7.9 V.
17-03-17 21:27:53.348 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36989 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36989 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36982 (-177.0 uncal um), Max = 36997 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:27:53.348 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36989, posNoise = 8, negNoise = 7
17-03-17 21:27:53.348 -07 000000012 INF: Z Motor: After move to -0.177931, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:53.348 -07 000000012 INF: Z Motor: Settle wait time = 1454 ms, measure time = 103 ms (allowed 150 ms), total time = 1557 ms
17-03-17 21:27:53.348 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:27:53.398 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:27:53.398 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:27:53.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:53.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:53.398 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:53.398 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:53.398 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:27:53.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:53.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:53.398 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:27:53.408 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:53.408 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:27:53.418 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:27:53.418 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:27:53.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:27:53.468 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:27:53.668 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:27:53.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:27:53.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:27:53.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:27:53.698 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:27:53.708 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:27:53.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:27:53.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:27:53.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:53.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:27:53.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:27:53.808 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:53.808 -07 000000431 INF: Autofocus start
17-03-17 21:27:53.808 -07 000000431 INF: MeasureProfile start
17-03-17 21:27:53.808 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:53.818 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:53.818 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:27:53.818 -07 000000431 INF: MeasureProfile done
17-03-17 21:27:53.818 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:27:53.818 -07 000000431 INF: Autofocus finished
17-03-17 21:27:54.018 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:27:54.018 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:27:54.018 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177948534922731. ----------
17-03-17 21:27:54.018 -07 000000610 INF: Cycle	51	Tile	4	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:27:54.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37402, sync = True, waitForSettling = True)
17-03-17 21:27:54.028 -07 000000610 INF: Z Motor: Moving to -0.171215 mm, started at -0.177949 mm, distance = 6.73 um
17-03-17 21:27:54.028 -07 000000610 INF: FPGA: Xmit ZDACW 37402\n [Z Motor]
17-03-17 21:27:54.028 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:27:54.038 -07 000000610 INF: FPGA: 'ZDACW 37402' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:54.038 -07 000000459 INF: FPGA: Recv ZDACR 37402
17-03-17 21:27:54.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:27:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.198 -07 000000438 INF: FPGA: Recv ZSGSRD 35942
17-03-17 21:27:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35946
17-03-17 21:27:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.218 -07 000000608 INF: FPGA: Recv ZSGSRD 35941
17-03-17 21:27:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35948
17-03-17 21:27:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.238 -07 000000458 INF: FPGA: Recv ZSGSRD 35941
17-03-17 21:27:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35944
17-03-17 21:27:54.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.258 -07 000000382 INF: FPGA: Recv ZSGSRD 35942
17-03-17 21:27:54.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35937
17-03-17 21:27:54.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.278 -07 000000547 INF: FPGA: Recv ZSGSRD 35943
17-03-17 21:27:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:54.288 -07 000000576 INF: FPGA: Recv ZSGSRD 35935
17-03-17 21:27:54.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:54.298 -07 000000459 INF: FPGA: Recv ZPIEZORD 32033
17-03-17 21:27:54.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:54.308 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -8.6 V.
17-03-17 21:27:54.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35942 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35935 (-170.3 uncal um), Max = 35948 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:27:54.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35942, posNoise = 6, negNoise = 7
17-03-17 21:27:54.308 -07 000000610 INF: Z Motor: After move to -0.171215, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:54.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:27:54.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:54.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:54.308 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:54.308 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:54.308 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:27:54.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:54.308 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:27:54.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:27:54.308 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:27:54.308 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:27:54.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:27:54.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:27:54.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:27:54.318 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:27:54.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:27:54.318 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:27:54.318 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:27:54.318 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:27:54.328 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:27:54.328 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:27:54.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37578 150\n [Camera]
17-03-17 21:27:54.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:27:54.798 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.977204,
17-03-17 21:27:54.958 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:27:54.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:27:54.958 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:54.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:54.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:27:54.958 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:27:54.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:27:54.968 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:54.968 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:54.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:27:55.148 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37578 817
17-03-17 21:27:55.298 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:27:55.348 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:27:55.348 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:27:55.348 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:55.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:27:55.348 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:27:55.348 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:55.348 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:27:55.348 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:27:55.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:27:55.358 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:27:55.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:27:55.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:27:55.508 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:55.508 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:55.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:27:55.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:27:55.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:27:55.518 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:55.518 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:55.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:27:55.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:27:55.698 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:27:55.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37578 150' command took 2 ms to send, 1369 ms to get response, and 1375 ms overall
17-03-17 21:27:55.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:27:55.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171222384810307. ------
17-03-17 21:27:55.818 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:55.818 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17778 mm
17-03-17 21:27:55.818 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:27:55.828 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:55.828 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:27:55.828 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38836, sync = True, waitForSettling = False)
17-03-17 21:27:55.828 -07 000000431 INF: Z Motor: Moving to -0.177780 mm, started at -0.171222 mm, distance = -6.56 um
17-03-17 21:27:55.828 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:27:55.828 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:27:55.828 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:27:55.838 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:55.838 -07 000000547 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:27:55.848 -07 000000431 INF: FPGA: Xmit ZDACW 38836\n [Z Motor]
17-03-17 21:27:55.848 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:27:55.848 -07 000000382 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:55.848 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:27:55.848 -07 000000382 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:27:55.848 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:27:55.858 -07 000000431 INF: FPGA: 'ZDACW 38836' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:27:55.858 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:55.858 -07 000000576 INF: FPGA: Recv ZDACR 38836
17-03-17 21:27:55.868 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:55.868 -07 000000431 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:27:55.868 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:27:55.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:27:55.918 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:27:55.918 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:55.918 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:27:55.918 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:27:55.918 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:55.918 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:55.918 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:27:55.918 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:27:55.928 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:27:56.028 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:27:56.028 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:27:56.238 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:27:56.238 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:27:56.278 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:56.288 -07 000000569 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:27:56.288 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:27:56.288 -07 000000382 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:56.288 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:27:56.288 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 21:27:56.878 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:27:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:27:57.238 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:57.238 -07 000000512 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:27:57.248 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.248 -07 000000382 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:57.268 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:27:57.268 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:27:57.268 -07 000000382 INF: Y Motor: Moved to 63.2236 after 1440 ms (table move)
17-03-17 21:27:57.268 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177780 mm (DAC = 38836)
17-03-17 21:27:57.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.278 -07 000000438 INF: FPGA: Recv ZSGSRD 36967
17-03-17 21:27:57.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:27:57.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.278 -07 000000512 INF: FPGA: Recv ZSGSRD 36963
17-03-17 21:27:57.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:27:57.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.288 -07 000000547 INF: FPGA: Recv ZSGSRD 36968
17-03-17 21:27:57.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.298 -07 000000576 INF: FPGA: Recv ZSGSRD 36967
17-03-17 21:27:57.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36966
17-03-17 21:27:57.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.318 -07 000000424 INF: FPGA: Recv ZSGSRD 36973
17-03-17 21:27:57.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.328 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.328 -07 000000459 INF: FPGA: Recv ZSGSRD 36964
17-03-17 21:27:57.338 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.338 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.338 -07 000000608 INF: FPGA: Recv ZSGSRD 36958
17-03-17 21:27:57.348 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.348 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.348 -07 000000576 INF: FPGA: Recv ZSGSRD 36966
17-03-17 21:27:57.358 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.358 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:57.358 -07 000000475 INF: FPGA: Recv ZSGSRD 36958
17-03-17 21:27:57.368 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.368 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:57.368 -07 000000501 INF: FPGA: Recv ZPIEZORD 33365
17-03-17 21:27:57.378 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:57.378 -07 000000415 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -8.0 V.
17-03-17 21:27:57.378 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36965 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36966 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36958 (-176.9 uncal um), Max = 36973 (-177.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:27:57.378 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36965, posNoise = 8, negNoise = 7
17-03-17 21:27:57.378 -07 000000415 INF: Z Motor: After move to -0.177780, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:57.378 -07 000000415 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:27:57.378 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:27:57.428 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:27:57.428 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:27:57.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:57.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:57.428 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:57.428 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:57.428 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:27:57.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:57.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:57.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:27:57.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:57.438 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:27:57.448 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:27:57.448 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:27:57.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:27:57.498 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:27:57.698 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:27:57.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:27:57.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:27:57.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:27:57.738 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:27:57.738 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:27:57.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:27:57.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:27:57.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:57.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:27:57.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:27:57.838 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:57.838 -07 000000382 INF: Autofocus start
17-03-17 21:27:57.838 -07 000000382 INF: MeasureProfile start
17-03-17 21:27:57.838 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:57.848 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:27:57.848 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:27:57.848 -07 000000382 INF: MeasureProfile done
17-03-17 21:27:57.848 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:27:57.848 -07 000000382 INF: Autofocus finished
17-03-17 21:27:58.048 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:27:58.048 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:27:58.048 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177794353831329. ----------
17-03-17 21:27:58.048 -07 000000610 INF: Cycle	51	Tile	5	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:27:58.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37350, sync = True, waitForSettling = True)
17-03-17 21:27:58.058 -07 000000610 INF: Z Motor: Moving to -0.170977 mm, started at -0.177794 mm, distance = 6.82 um
17-03-17 21:27:58.058 -07 000000610 INF: FPGA: Xmit ZDACW 37350\n [Z Motor]
17-03-17 21:27:58.058 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:27:58.068 -07 000000610 INF: FPGA: 'ZDACW 37350' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:58.068 -07 000000438 INF: FPGA: Recv ZDACR 37350
17-03-17 21:27:58.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:27:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.228 -07 000000501 INF: FPGA: Recv ZSGSRD 35907
17-03-17 21:27:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:27:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35906
17-03-17 21:27:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:27:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.258 -07 000000429 INF: FPGA: Recv ZSGSRD 35908
17-03-17 21:27:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.268 -07 000000627 INF: FPGA: Recv ZSGSRD 35903
17-03-17 21:27:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.278 -07 000000512 INF: FPGA: Recv ZSGSRD 35909
17-03-17 21:27:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.288 -07 000000382 INF: FPGA: Recv ZSGSRD 35908
17-03-17 21:27:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35908
17-03-17 21:27:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35902
17-03-17 21:27:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:27:58.318 -07 000000429 INF: FPGA: Recv ZSGSRD 35905
17-03-17 21:27:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:27:58.328 -07 000000012 INF: FPGA: Recv ZPIEZORD 31961
17-03-17 21:27:58.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:27:58.338 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.7 V.
17-03-17 21:27:58.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35902 (-170.1 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:27:58.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 3, negNoise = 5
17-03-17 21:27:58.338 -07 000000610 INF: Z Motor: After move to -0.170977, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:27:58.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:27:58.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:27:58.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:27:58.338 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:27:58.338 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:27:58.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:27:58.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:27:58.338 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:27:58.338 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:27:58.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:27:58.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:27:58.338 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:27:58.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:27:58.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:27:58.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:27:58.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:27:58.338 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:27:58.348 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:27:58.348 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:27:58.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:27:58.348 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:27:58.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37527 150\n [Camera]
17-03-17 21:27:58.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:27:58.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:27:58.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:27:58.988 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:58.988 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:27:58.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:27:58.998 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:58.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:58.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:27:58.998 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:58.998 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:27:59.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37527 817
17-03-17 21:27:59.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:27:59.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:27:59.368 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:27:59.368 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:59.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:27:59.368 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:27:59.368 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:59.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:27:59.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:27:59.378 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:27:59.388 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:27:59.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:27:59.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:27:59.538 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:27:59.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:27:59.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:27:59.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:27:59.548 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:27:59.548 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:27:59.558 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:27:59.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:27:59.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:27:59.728 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:27:59.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37527 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-17 21:27:59.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:27:59.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170997537385346. ------
17-03-17 21:27:59.858 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:27:59.858 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17741 mm
17-03-17 21:27:59.858 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:27:59.858 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:27:59.858 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:27:59.858 -07 000000459 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:27:59.858 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38756, sync = True, waitForSettling = False)
17-03-17 21:27:59.858 -07 000000608 INF: Z Motor: Moving to -0.177414 mm, started at -0.170998 mm, distance = -6.42 um
17-03-17 21:27:59.868 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:27:59.868 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:27:59.868 -07 000000501 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:27:59.878 -07 000000608 INF: FPGA: Xmit ZDACW 38756\n [Z Motor]
17-03-17 21:27:59.878 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:27:59.878 -07 000000459 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:27:59.878 -07 000000459 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:27:59.878 -07 000000459 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:27:59.878 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:27:59.888 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:27:59.888 -07 000000608 INF: FPGA: 'ZDACW 38756' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:27:59.898 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:27:59.908 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:27:59.908 -07 000000475 INF: FPGA: Recv ZDACR 38756
17-03-17 21:27:59.918 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:27:59.918 -07 000000608 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:27:59.928 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:27:59.928 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:27:59.928 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:59.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:27:59.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:27:59.938 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:27:59.938 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:27:59.938 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:27:59.938 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:27:59.948 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:28:00.088 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:00.088 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:28:00.168 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.018051,
17-03-17 21:28:00.278 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:28:00.278 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 21:28:00.308 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:00.318 -07 000000382 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:28:00.318 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:28:00.318 -07 000000459 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:00.318 -07 000000459 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:28:00.318 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.839 mm, average velocity = 2.097 mm/sec
17-03-17 21:28:01.268 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:01.268 -07 000000576 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:28:01.278 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:01.278 -07 000000459 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:01.298 -07 000000459 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:01.298 -07 000000459 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:28:01.298 -07 000000459 INF: Y Motor: Moved to 64.0566 after 1436 ms (table move)
17-03-17 21:28:01.298 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177414 mm (DAC = 38756)
17-03-17 21:28:01.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36903
17-03-17 21:28:01.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:01.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.308 -07 000000608 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:28:01.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.318 -07 000000382 INF: FPGA: Recv ZSGSRD 36910
17-03-17 21:28:01.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.328 -07 000000012 INF: FPGA: Recv ZSGSRD 36908
17-03-17 21:28:01.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.338 -07 000000547 INF: FPGA: Recv ZSGSRD 36913
17-03-17 21:28:01.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36906
17-03-17 21:28:01.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36911
17-03-17 21:28:01.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.368 -07 000000512 INF: FPGA: Recv ZSGSRD 36904
17-03-17 21:28:01.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.378 -07 000000476 INF: FPGA: Recv ZSGSRD 36908
17-03-17 21:28:01.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:01.388 -07 000000547 INF: FPGA: Recv ZSGSRD 36909
17-03-17 21:28:01.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.398 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:01.398 -07 000000576 INF: FPGA: Recv ZPIEZORD 33297
17-03-17 21:28:01.408 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:01.408 -07 000000627 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.0 V.
17-03-17 21:28:01.408 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36907 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36908 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36902 (-176.5 uncal um), Max = 36913 (-176.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:28:01.408 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36907, posNoise = 6, negNoise = 5
17-03-17 21:28:01.408 -07 000000627 INF: Z Motor: After move to -0.177414, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:01.408 -07 000000627 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:28:01.408 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:01.458 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:28:01.458 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:01.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:01.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:01.458 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:01.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:01.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:01.458 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:01.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:01.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:01.468 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:01.468 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:01.478 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:28:01.478 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:28:01.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:01.528 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:01.728 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:01.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:01.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:01.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:01.768 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:01.768 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:01.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 21:28:01.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:28:01.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:01.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:01.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:28:01.868 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:01.868 -07 000000459 INF: Autofocus start
17-03-17 21:28:01.868 -07 000000459 INF: MeasureProfile start
17-03-17 21:28:01.868 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:01.878 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:01.878 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:01.878 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:01.878 -07 000000459 INF: MeasureProfile done
17-03-17 21:28:01.878 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:28:01.878 -07 000000459 INF: Autofocus finished
17-03-17 21:28:02.078 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:02.078 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:02.078 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177421749527107. ----------
17-03-17 21:28:02.088 -07 000000610 INF: Cycle	51	Tile	6	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:02.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37253, sync = True, waitForSettling = True)
17-03-17 21:28:02.088 -07 000000610 INF: Z Motor: Moving to -0.170533 mm, started at -0.177422 mm, distance = 6.89 um
17-03-17 21:28:02.088 -07 000000610 INF: FPGA: Xmit ZDACW 37253\n [Z Motor]
17-03-17 21:28:02.088 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:28:02.098 -07 000000610 INF: FPGA: 'ZDACW 37253' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:02.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:02.098 -07 000000382 INF: FPGA: Recv ZDACR 37253
17-03-17 21:28:02.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.258 -07 000000459 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:28:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.268 -07 000000475 INF: FPGA: Recv ZSGSRD 35837
17-03-17 21:28:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35831
17-03-17 21:28:02.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35836
17-03-17 21:28:02.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.298 -07 000000438 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:28:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.308 -07 000000627 INF: FPGA: Recv ZSGSRD 35839
17-03-17 21:28:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:02.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.318 -07 000000012 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:28:02.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.328 -07 000000424 INF: FPGA: Recv ZSGSRD 35834
17-03-17 21:28:02.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:28:02.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:02.348 -07 000000429 INF: FPGA: Recv ZSGSRD 35839
17-03-17 21:28:02.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:02.358 -07 000000480 INF: FPGA: Recv ZPIEZORD 31866
17-03-17 21:28:02.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:02.368 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.8 V.
17-03-17 21:28:02.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35837 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35839 (-169.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:28:02.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35837, posNoise = 2, negNoise = 6
17-03-17 21:28:02.368 -07 000000610 INF: Z Motor: After move to -0.170533, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:02.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:28:02.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:02.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:02.368 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:02.368 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:02.368 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:02.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:02.368 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:02.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:02.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:02.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:02.368 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:02.368 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:02.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:28:02.368 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:02.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:02.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:02.378 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:28:02.378 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:28:02.378 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:02.378 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:28:02.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37430 150\n [Camera]
17-03-17 21:28:02.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 21:28:03.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:03.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:03.018 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:03.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:03.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:03.018 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:03.028 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:03.028 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:03.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:03.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:28:03.208 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37430 817
17-03-17 21:28:03.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:03.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:28:03.398 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:28:03.398 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:03.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:28:03.408 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:28:03.408 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:03.408 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:03.408 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:03.408 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:28:03.408 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:28:03.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:03.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:03.568 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:03.568 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:03.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:28:03.568 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:03.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:03.568 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:03.568 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:03.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:28:03.758 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:28:03.758 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:03.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37430 150' command took 2 ms to send, 1367 ms to get response, and 1374 ms overall
17-03-17 21:28:03.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:03.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170547842535422. ------
17-03-17 21:28:03.768 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:03.768 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17706 mm
17-03-17 21:28:03.768 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:03.768 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:03.768 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:28:03.768 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:28:03.768 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38679, sync = True, waitForSettling = False)
17-03-17 21:28:03.768 -07 000000458 INF: Z Motor: Moving to -0.177061 mm, started at -0.170548 mm, distance = -6.51 um
17-03-17 21:28:03.778 -07 000000458 INF: FPGA: Xmit ZDACW 38679\n [Z Motor]
17-03-17 21:28:03.778 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:03.778 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:28:03.788 -07 000000458 INF: FPGA: 'ZDACW 38679' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:03.788 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:03.788 -07 000000429 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:28:03.798 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:03.798 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:28:03.798 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:03.798 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:03.798 -07 000000576 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:28:03.808 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:03.808 -07 000000429 INF: FPGA: Recv ZDACR 38679
17-03-17 21:28:03.818 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:03.818 -07 000000458 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:28:03.818 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:03.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:28:03.978 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:28:03.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:03.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:28:03.978 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:28:03.978 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:03.978 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:03.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:28:03.978 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:28:03.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:28:03.998 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:03.998 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:28:04.188 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:28:04.188 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:28:04.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:04.228 -07 000000569 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:28:04.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:04.238 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:04.238 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:28:04.238 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 21:28:05.188 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:05.188 -07 000000476 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:28:05.198 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.198 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:05.218 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:05.218 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:05.218 -07 000000576 INF: Y Motor: Moved to 64.8784 after 1447 ms (table move)
17-03-17 21:28:05.218 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177061 mm (DAC = 38679)
17-03-17 21:28:05.228 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.228 -07 000000476 INF: FPGA: Recv ZSGSRD 36858
17-03-17 21:28:05.238 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:05.238 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.238 -07 000000431 INF: FPGA: Recv ZSGSRD 36856
17-03-17 21:28:05.248 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.248 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.248 -07 000000512 INF: FPGA: Recv ZSGSRD 36861
17-03-17 21:28:05.258 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.258 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36850
17-03-17 21:28:05.268 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.268 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.268 -07 000000608 INF: FPGA: Recv ZSGSRD 36853
17-03-17 21:28:05.278 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.278 -07 000000626 INF: FPGA: Recv ZSGSRD 36847
17-03-17 21:28:05.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36846
17-03-17 21:28:05.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.298 -07 000000569 INF: FPGA: Recv ZSGSRD 36851
17-03-17 21:28:05.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.308 -07 000000476 INF: FPGA: Recv ZSGSRD 36856
17-03-17 21:28:05.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:05.318 -07 000000431 INF: FPGA: Recv ZSGSRD 36857
17-03-17 21:28:05.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.328 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:05.328 -07 000000512 INF: FPGA: Recv ZPIEZORD 33269
17-03-17 21:28:05.338 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:05.338 -07 000000424 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -7.9 V.
17-03-17 21:28:05.338 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36854 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36854 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36846 (-176.1 uncal um), Max = 36861 (-176.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:28:05.338 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36854, posNoise = 7, negNoise = 8
17-03-17 21:28:05.338 -07 000000424 INF: Z Motor: After move to -0.177061, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:05.338 -07 000000424 INF: Z Motor: Settle wait time = 1450 ms, measure time = 111 ms (allowed 150 ms), total time = 1561 ms
17-03-17 21:28:05.338 -07 000000424 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:05.378 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:28:05.378 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:05.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:05.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:05.378 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:05.378 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:05.378 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:05.378 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:05.378 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:05.388 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:05.388 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:05.388 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:05.388 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:28:05.388 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:28:05.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:05.438 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:05.538 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.042558,
17-03-17 21:28:05.638 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:05.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:05.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:05.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:28:05.678 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:05.678 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:05.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:28:05.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:28:05.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:05.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:28:05.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:28:05.778 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:05.778 -07 000000382 INF: Autofocus start
17-03-17 21:28:05.778 -07 000000382 INF: MeasureProfile start
17-03-17 21:28:05.778 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:05.788 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:05.788 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:05.798 -07 000000382 INF: MeasureProfile done
17-03-17 21:28:05.798 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:05.798 -07 000000382 INF: Autofocus finished
17-03-17 21:28:05.988 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:05.988 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:05.988 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177081266283593. ----------
17-03-17 21:28:05.988 -07 000000610 INF: Cycle	51	Tile	7	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:05.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37194, sync = True, waitForSettling = True)
17-03-17 21:28:05.998 -07 000000610 INF: Z Motor: Moving to -0.170263 mm, started at -0.177081 mm, distance = 6.82 um
17-03-17 21:28:05.998 -07 000000610 INF: FPGA: Xmit ZDACW 37194\n [Z Motor]
17-03-17 21:28:05.998 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:28:06.008 -07 000000610 INF: FPGA: 'ZDACW 37194' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:06.008 -07 000000459 INF: FPGA: Recv ZDACR 37194
17-03-17 21:28:06.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:06.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.168 -07 000000438 INF: FPGA: Recv ZSGSRD 35795
17-03-17 21:28:06.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35800
17-03-17 21:28:06.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.188 -07 000000012 INF: FPGA: Recv ZSGSRD 35794
17-03-17 21:28:06.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.198 -07 000000458 INF: FPGA: Recv ZSGSRD 35786
17-03-17 21:28:06.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.208 -07 000000429 INF: FPGA: Recv ZSGSRD 35807
17-03-17 21:28:06.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.218 -07 000000501 INF: FPGA: Recv ZSGSRD 35799
17-03-17 21:28:06.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.228 -07 000000512 INF: FPGA: Recv ZSGSRD 35786
17-03-17 21:28:06.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35793
17-03-17 21:28:06.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.248 -07 000000458 INF: FPGA: Recv ZSGSRD 35791
17-03-17 21:28:06.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:06.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35799
17-03-17 21:28:06.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:06.268 -07 000000501 INF: FPGA: Recv ZPIEZORD 31806
17-03-17 21:28:06.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:06.278 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.675 V. Piezo Error = -8.8 V.
17-03-17 21:28:06.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35795 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35794 (-169.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35786 (-169.3 uncal um), Max = 35807 (-169.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:28:06.278 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35795, posNoise = 12, negNoise = 9
17-03-17 21:28:06.278 -07 000000610 INF: Z Motor: After move to -0.170263, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:06.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:28:06.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:06.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:06.278 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:06.278 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:06.278 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:06.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:06.278 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:06.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:06.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:06.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:06.278 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:06.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:06.288 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:06.288 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:06.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:06.288 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:06.298 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:28:06.298 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:28:06.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:28:06.298 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:28:06.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37371 150\n [Camera]
17-03-17 21:28:06.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:06.878 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:06.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:06.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:06.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:06.938 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:06.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 21:28:06.938 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:06.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:06.938 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:06.938 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:06.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:28:07.128 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37371 817
17-03-17 21:28:07.278 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:28:07.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:28:07.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:28:07.328 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:07.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:07.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:28:07.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:28:07.328 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:28:07.328 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:07.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:07.338 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:28:07.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:28:07.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:28:07.488 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:07.488 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:07.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 21:28:07.488 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:28:07.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:28:07.488 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:07.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:07.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:28:07.678 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1369
17-03-17 21:28:07.678 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:07.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37371 150' command took 2 ms to send, 1365 ms to get response, and 1376 ms overall
17-03-17 21:28:07.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:07.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170278025625468. ------
17-03-17 21:28:07.688 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:07.688 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17684 mm
17-03-17 21:28:07.688 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:07.688 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:28:07.688 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38632, sync = True, waitForSettling = False)
17-03-17 21:28:07.688 -07 000000627 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:28:07.688 -07 000000512 INF: Z Motor: Moving to -0.176846 mm, started at -0.170278 mm, distance = -6.57 um
17-03-17 21:28:07.688 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:07.698 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:07.698 -07 000000512 INF: FPGA: Xmit ZDACW 38632\n [Z Motor]
17-03-17 21:28:07.698 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:28:07.708 -07 000000512 INF: FPGA: 'ZDACW 38632' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:28:07.708 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:07.708 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:28:07.718 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:07.718 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:28:07.718 -07 000000627 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:07.718 -07 000000627 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:07.718 -07 000000627 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:28:07.728 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:07.728 -07 000000382 INF: FPGA: Recv ZDACR 38632
17-03-17 21:28:07.738 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:07.738 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:07.738 -07 000000512 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:28:07.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:28:07.888 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:28:07.888 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:07.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:28:07.888 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:28:07.888 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:07.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:07.898 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:28:07.898 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:28:07.898 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:28:07.918 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:07.918 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:28:08.108 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:28:08.108 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:28:08.148 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:08.148 -07 000000459 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:28:08.158 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:08.158 -07 000000627 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:08.158 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:28:08.158 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 21:28:09.108 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:09.108 -07 000000480 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:28:09.118 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:09.118 -07 000000627 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:09.138 -07 000000627 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:09.138 -07 000000627 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:09.138 -07 000000627 INF: Y Motor: Moved to 65.7134 after 1453 ms (table move)
17-03-17 21:28:09.148 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176846 mm (DAC = 38632)
17-03-17 21:28:09.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.148 -07 000000459 INF: FPGA: Recv ZSGSRD 36817
17-03-17 21:28:09.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:09.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.158 -07 000000608 INF: FPGA: Recv ZSGSRD 36818
17-03-17 21:28:09.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.168 -07 000000431 INF: FPGA: Recv ZSGSRD 36827
17-03-17 21:28:09.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36818
17-03-17 21:28:09.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.188 -07 000000608 INF: FPGA: Recv ZSGSRD 36818
17-03-17 21:28:09.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.198 -07 000000475 INF: FPGA: Recv ZSGSRD 36818
17-03-17 21:28:09.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.208 -07 000000382 INF: FPGA: Recv ZSGSRD 36811
17-03-17 21:28:09.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.218 -07 000000415 INF: FPGA: Recv ZSGSRD 36822
17-03-17 21:28:09.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36815
17-03-17 21:28:09.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:09.238 -07 000000608 INF: FPGA: Recv ZSGSRD 36823
17-03-17 21:28:09.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.248 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:09.248 -07 000000431 INF: FPGA: Recv ZPIEZORD 33195
17-03-17 21:28:09.258 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.258 -07 000000012 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.895 V. Piezo Error = -8.0 V.
17-03-17 21:28:09.258 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36819 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36818 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36811 (-175.9 uncal um), Max = 36827 (-176.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:28:09.258 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36819, posNoise = 8, negNoise = 8
17-03-17 21:28:09.258 -07 000000012 INF: Z Motor: After move to -0.176846, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:09.258 -07 000000012 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-17 21:28:09.258 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:09.308 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 21:28:09.308 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:09.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:09.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:09.308 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:09.308 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:09.308 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:09.308 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:09.308 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:09.308 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:09.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:09.318 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:09.328 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:28:09.328 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:28:09.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:09.378 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:28:09.578 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 21:28:09.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 21:28:09.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:09.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:09.618 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:09.618 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:09.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:28:09.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:28:09.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:09.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:09.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:28:09.718 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:09.718 -07 000000626 INF: Autofocus start
17-03-17 21:28:09.718 -07 000000626 INF: MeasureProfile start
17-03-17 21:28:09.718 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:09.728 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:09.728 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:09.728 -07 000000626 INF: MeasureProfile done
17-03-17 21:28:09.728 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:28:09.728 -07 000000626 INF: Autofocus finished
17-03-17 21:28:09.928 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:09.928 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:09.928 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176856418858632. ----------
17-03-17 21:28:09.928 -07 000000610 INF: Cycle	51	Tile	8	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:09.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37129, sync = True, waitForSettling = True)
17-03-17 21:28:09.938 -07 000000610 INF: Z Motor: Moving to -0.169966 mm, started at -0.176856 mm, distance = 6.89 um
17-03-17 21:28:09.938 -07 000000610 INF: FPGA: Xmit ZDACW 37129\n [Z Motor]
17-03-17 21:28:09.938 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:28:09.948 -07 000000610 INF: FPGA: 'ZDACW 37129' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:09.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:09.948 -07 000000627 INF: FPGA: Recv ZDACR 37129
17-03-17 21:28:09.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:09.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:10.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35744
17-03-17 21:28:10.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:10.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.118 -07 000000547 INF: FPGA: Recv ZSGSRD 35744
17-03-17 21:28:10.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.128 -07 000000512 INF: FPGA: Recv ZSGSRD 35749
17-03-17 21:28:10.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35749
17-03-17 21:28:10.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35750
17-03-17 21:28:10.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35743
17-03-17 21:28:10.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.168 -07 000000012 INF: FPGA: Recv ZSGSRD 35751
17-03-17 21:28:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35743
17-03-17 21:28:10.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.188 -07 000000415 INF: FPGA: Recv ZSGSRD 35747
17-03-17 21:28:10.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:10.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35747
17-03-17 21:28:10.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:10.208 -07 000000480 INF: FPGA: Recv ZPIEZORD 31772
17-03-17 21:28:10.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:10.218 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.8 V.
17-03-17 21:28:10.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35747 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35747 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35743 (-169.1 uncal um), Max = 35751 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:28:10.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35747, posNoise = 4, negNoise = 4
17-03-17 21:28:10.218 -07 000000610 INF: Z Motor: After move to -0.169966, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:10.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:28:10.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:10.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:10.218 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:10.218 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:10.218 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:10.218 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:10.218 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:10.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:10.218 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:10.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:10.218 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:10.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:10.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:10.228 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:10.228 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:10.228 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:10.238 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:28:10.238 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:28:10.238 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:28:10.238 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:28:10.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37305 150\n [Camera]
17-03-17 21:28:10.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:10.868 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:10.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:10.868 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:10.878 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:10.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:10.878 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:10.878 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:10.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:10.888 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:10.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:28:10.908 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.033041,
17-03-17 21:28:11.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37305 817
17-03-17 21:28:11.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:11.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:28:11.248 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:28:11.248 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:11.258 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:11.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:28:11.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:28:11.258 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:28:11.258 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:11.268 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:11.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:28:11.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:11.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:11.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:11.428 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:11.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:11.428 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:11.438 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:11.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:28:11.438 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:11.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:28:11.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:28:11.618 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:11.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37305 150' command took 2 ms to send, 1371 ms to get response, and 1374 ms overall
17-03-17 21:28:11.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:11.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169969663442664. ------
17-03-17 21:28:11.618 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:11.618 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17633 mm
17-03-17 21:28:11.618 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:11.738 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:11.738 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 21:28:11.738 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:11.738 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:28:11.738 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:28:11.738 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38520, sync = True, waitForSettling = False)
17-03-17 21:28:11.738 -07 000000608 INF: Z Motor: Moving to -0.176333 mm, started at -0.169970 mm, distance = -6.36 um
17-03-17 21:28:11.748 -07 000000608 INF: FPGA: Xmit ZDACW 38520\n [Z Motor]
17-03-17 21:28:11.748 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:28:11.758 -07 000000608 INF: FPGA: 'ZDACW 38520' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:28:11.758 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:11.758 -07 000000429 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:28:11.768 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:28:11.768 -07 000000438 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:11.768 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:11.768 -07 000000382 INF: FPGA: Recv ZDACR 38520
17-03-17 21:28:11.768 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:11.768 -07 000000438 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:28:11.778 -07 000000608 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:11.778 -07 000000608 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 21:28:11.778 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:11.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:28:11.818 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:28:11.818 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:11.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:11.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:28:11.828 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:28:11.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:11.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:11.828 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:28:11.838 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:28:11.878 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:11.938 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:11.938 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:28:12.158 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:28:12.158 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 383 ms overall
17-03-17 21:28:12.188 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:12.198 -07 000000431 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:28:12.198 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:12.198 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:12.198 -07 000000438 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:28:12.198 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-17 21:28:13.148 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:13.148 -07 000000424 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:28:13.158 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.158 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:13.178 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:13.178 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:13.178 -07 000000438 INF: Y Motor: Moved to 66.5386 after 1440 ms (table move)
17-03-17 21:28:13.178 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176333 mm (DAC = 38520)
17-03-17 21:28:13.178 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36739
17-03-17 21:28:13.188 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:28:13.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.188 -07 000000576 INF: FPGA: Recv ZSGSRD 36742
17-03-17 21:28:13.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:13.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.198 -07 000000512 INF: FPGA: Recv ZSGSRD 36746
17-03-17 21:28:13.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36734
17-03-17 21:28:13.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.218 -07 000000547 INF: FPGA: Recv ZSGSRD 36731
17-03-17 21:28:13.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36741
17-03-17 21:28:13.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.238 -07 000000431 INF: FPGA: Recv ZSGSRD 36742
17-03-17 21:28:13.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.248 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.248 -07 000000424 INF: FPGA: Recv ZSGSRD 36742
17-03-17 21:28:13.258 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.258 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.258 -07 000000012 INF: FPGA: Recv ZSGSRD 36743
17-03-17 21:28:13.268 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.268 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:13.268 -07 000000415 INF: FPGA: Recv ZSGSRD 36743
17-03-17 21:28:13.278 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.278 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:13.278 -07 000000501 INF: FPGA: Recv ZPIEZORD 33097
17-03-17 21:28:13.288 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.288 -07 000000480 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.1 V.
17-03-17 21:28:13.288 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36740 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36742 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36746 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:28:13.288 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36740, posNoise = 6, negNoise = 9
17-03-17 21:28:13.288 -07 000000480 INF: Z Motor: After move to -0.176333, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:13.288 -07 000000480 INF: Z Motor: Settle wait time = 1443 ms, measure time = 102 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:28:13.288 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:13.338 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 21:28:13.338 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:13.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:13.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:13.338 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:13.338 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:13.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:13.338 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:13.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:13.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:13.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:13.348 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:13.348 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:28:13.348 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:28:13.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:13.398 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:13.598 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:13.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:13.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:13.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:13.638 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:13.638 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:13.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:28:13.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:28:13.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:13.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:13.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:28:13.738 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:13.738 -07 000000475 INF: Autofocus start
17-03-17 21:28:13.738 -07 000000475 INF: MeasureProfile start
17-03-17 21:28:13.738 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:13.748 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:13.748 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:13.748 -07 000000475 INF: MeasureProfile done
17-03-17 21:28:13.748 -07 000000475 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:28:13.748 -07 000000475 INF: Autofocus finished
17-03-17 21:28:13.948 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:13.948 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:13.948 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176348906099432. ----------
17-03-17 21:28:13.948 -07 000000610 INF: Cycle	51	Tile	9	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:13.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37070, sync = True, waitForSettling = True)
17-03-17 21:28:13.958 -07 000000610 INF: Z Motor: Moving to -0.169696 mm, started at -0.176349 mm, distance = 6.65 um
17-03-17 21:28:13.958 -07 000000610 INF: FPGA: Xmit ZDACW 37070\n [Z Motor]
17-03-17 21:28:13.958 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:28:13.968 -07 000000610 INF: FPGA: 'ZDACW 37070' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:13.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:13.968 -07 000000382 INF: FPGA: Recv ZDACR 37070
17-03-17 21:28:13.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:13.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:14.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35706
17-03-17 21:28:14.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:14.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.138 -07 000000480 INF: FPGA: Recv ZSGSRD 35712
17-03-17 21:28:14.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35706
17-03-17 21:28:14.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35702
17-03-17 21:28:14.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35698
17-03-17 21:28:14.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.178 -07 000000415 INF: FPGA: Recv ZSGSRD 35701
17-03-17 21:28:14.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.188 -07 000000012 INF: FPGA: Recv ZSGSRD 35699
17-03-17 21:28:14.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:28:14.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:28:14.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:14.218 -07 000000501 INF: FPGA: Recv ZSGSRD 35710
17-03-17 21:28:14.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:14.228 -07 000000429 INF: FPGA: Recv ZPIEZORD 31735
17-03-17 21:28:14.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:14.238 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -8.8 V.
17-03-17 21:28:14.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35704 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35705 (-168.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35698 (-168.8 uncal um), Max = 35712 (-168.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:28:14.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35704, posNoise = 8, negNoise = 6
17-03-17 21:28:14.238 -07 000000610 INF: Z Motor: After move to -0.169696, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:14.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:28:14.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:14.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:14.238 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:14.238 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:14.238 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:14.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:14.238 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:14.238 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:14.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:14.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:14.248 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:14.248 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:14.248 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:14.248 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:14.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:14.248 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:14.258 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:28:14.258 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:28:14.258 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:28:14.258 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:28:14.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37247 150\n [Camera]
17-03-17 21:28:14.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:14.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:14.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:14.898 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:14.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:14.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:14.898 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:14.898 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:14.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:28:14.898 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:14.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:15.088 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37247 817
17-03-17 21:28:15.238 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:15.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:28:15.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:28:15.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:15.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:28:15.298 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:28:15.298 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:15.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:15.298 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:28:15.298 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:15.308 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:28:15.448 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:15.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:15.448 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:15.448 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:15.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:28:15.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:15.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:15.448 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:15.448 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:15.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:28:15.638 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:15.638 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:15.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37247 150' command took 2 ms to send, 1367 ms to get response, and 1375 ms overall
17-03-17 21:28:15.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:15.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169693422320568. ------
17-03-17 21:28:15.648 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:15.648 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17648 mm
17-03-17 21:28:15.648 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:15.648 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:15.648 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:28:15.648 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:28:15.648 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38553, sync = True, waitForSettling = False)
17-03-17 21:28:15.648 -07 000000626 INF: Z Motor: Moving to -0.176484 mm, started at -0.169693 mm, distance = -6.79 um
17-03-17 21:28:15.658 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:15.658 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:15.658 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:28:15.668 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:15.668 -07 000000608 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:15.668 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:15.668 -07 000000608 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:28:15.668 -07 000000626 INF: FPGA: Xmit ZDACW 38553\n [Z Motor]
17-03-17 21:28:15.668 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:28:15.678 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:15.678 -07 000000626 INF: FPGA: 'ZDACW 38553' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:28:15.688 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:15.698 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:15.698 -07 000000382 INF: FPGA: Recv ZDACR 38553
17-03-17 21:28:15.708 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:15.708 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:28:15.848 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:28:15.848 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:28:15.848 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:15.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:28:15.858 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:28:15.858 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:15.858 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:15.858 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:28:15.858 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:28:15.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:28:15.878 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:15.878 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 21:28:16.058 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:28:16.058 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 21:28:16.098 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:16.108 -07 000000415 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:28:16.108 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:16.108 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:16.108 -07 000000608 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:28:16.108 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.115 mm/sec
17-03-17 21:28:16.278 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.026244,
17-03-17 21:28:16.878 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:17.058 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:17.058 -07 000000415 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:28:17.068 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:17.068 -07 000000608 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:17.088 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:17.088 -07 000000608 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:17.088 -07 000000608 INF: Y Motor: Moved to 67.3716 after 1435 ms (table move)
17-03-17 21:28:17.088 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176484 mm (DAC = 38553)
17-03-17 21:28:17.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.098 -07 000000501 INF: FPGA: Recv ZSGSRD 36765
17-03-17 21:28:17.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:17.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.098 -07 000000429 INF: FPGA: Recv ZSGSRD 36767
17-03-17 21:28:17.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.108 -07 000000569 INF: FPGA: Recv ZSGSRD 36760
17-03-17 21:28:17.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36762
17-03-17 21:28:17.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.128 -07 000000608 INF: FPGA: Recv ZSGSRD 36756
17-03-17 21:28:17.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.138 -07 000000512 INF: FPGA: Recv ZSGSRD 36761
17-03-17 21:28:17.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.148 -07 000000476 INF: FPGA: Recv ZSGSRD 36761
17-03-17 21:28:17.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.158 -07 000000459 INF: FPGA: Recv ZSGSRD 36762
17-03-17 21:28:17.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.168 -07 000000382 INF: FPGA: Recv ZSGSRD 36769
17-03-17 21:28:17.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:17.178 -07 000000012 INF: FPGA: Recv ZSGSRD 36765
17-03-17 21:28:17.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.188 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:17.188 -07 000000415 INF: FPGA: Recv ZPIEZORD 33108
17-03-17 21:28:17.198 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.198 -07 000000431 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.1 V.
17-03-17 21:28:17.198 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36763 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36762 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36756 (-175.6 uncal um), Max = 36769 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:28:17.198 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36763, posNoise = 6, negNoise = 7
17-03-17 21:28:17.198 -07 000000431 INF: Z Motor: After move to -0.176484, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:17.198 -07 000000431 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:28:17.198 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:17.248 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:28:17.248 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:17.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:17.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:17.248 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:17.248 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:17.248 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:17.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:17.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:17.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:17.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:17.258 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:17.268 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:28:17.268 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:28:17.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:17.318 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:17.518 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:17.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:17.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:17.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:28:17.558 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:17.558 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:17.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:28:17.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:28:17.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:17.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:28:17.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 21:28:17.658 -07 000000476 INF: Autofocus start
17-03-17 21:28:17.658 -07 000000476 INF: MeasureProfile start
17-03-17 21:28:17.658 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:17.658 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:17.668 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:17.668 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:17.668 -07 000000476 INF: MeasureProfile done
17-03-17 21:28:17.668 -07 000000476 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:28:17.668 -07 000000476 INF: Autofocus finished
17-03-17 21:28:17.868 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:17.868 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:17.868 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176496662978693. ----------
17-03-17 21:28:17.878 -07 000000610 INF: Cycle	51	Tile	10	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:17.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37050, sync = True, waitForSettling = True)
17-03-17 21:28:17.878 -07 000000610 INF: Z Motor: Moving to -0.169604 mm, started at -0.176497 mm, distance = 6.89 um
17-03-17 21:28:17.878 -07 000000610 INF: FPGA: Xmit ZDACW 37050\n [Z Motor]
17-03-17 21:28:17.878 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:28:17.888 -07 000000610 INF: FPGA: 'ZDACW 37050' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:17.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:17.888 -07 000000512 INF: FPGA: Recv ZDACR 37050
17-03-17 21:28:17.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:17.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:18.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.048 -07 000000608 INF: FPGA: Recv ZSGSRD 35690
17-03-17 21:28:18.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:18.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:28:18.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.068 -07 000000480 INF: FPGA: Recv ZSGSRD 35688
17-03-17 21:28:18.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:28:18.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.088 -07 000000431 INF: FPGA: Recv ZSGSRD 35688
17-03-17 21:28:18.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.098 -07 000000608 INF: FPGA: Recv ZSGSRD 35690
17-03-17 21:28:18.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.108 -07 000000476 INF: FPGA: Recv ZSGSRD 35691
17-03-17 21:28:18.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.118 -07 000000424 INF: FPGA: Recv ZSGSRD 35693
17-03-17 21:28:18.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.128 -07 000000438 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:28:18.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:18.138 -07 000000431 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:28:18.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:18.148 -07 000000501 INF: FPGA: Recv ZPIEZORD 31706
17-03-17 21:28:18.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:18.158 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -8.8 V.
17-03-17 21:28:18.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35690 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35690 (-168.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35688 (-168.7 uncal um), Max = 35693 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:28:18.158 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35690, posNoise = 3, negNoise = 2
17-03-17 21:28:18.158 -07 000000610 INF: Z Motor: After move to -0.169604, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:18.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:28:18.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:18.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:18.158 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:18.158 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:18.158 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:18.158 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:18.158 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:18.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:18.158 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:18.158 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:18.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:18.158 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:18.158 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:18.158 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:18.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:18.168 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:18.168 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:18.168 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 21:28:18.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:28:18.178 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:28:18.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37226 150\n [Camera]
17-03-17 21:28:18.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:18.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:18.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:18.808 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:18.808 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:18.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:28:18.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:18.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:18.808 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:18.808 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:18.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:28:18.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37226 817
17-03-17 21:28:19.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:19.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:28:19.188 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:28:19.188 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:19.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:28:19.188 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:19.188 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:28:19.188 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:28:19.188 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:19.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:19.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:28:19.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:19.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:19.358 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:19.358 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:19.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:28:19.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:19.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:19.368 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:19.368 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:19.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:28:19.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:19.548 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:19.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37226 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-17 21:28:19.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:19.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169603483350584. ------
17-03-17 21:28:19.678 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17601 mm
17-03-17 21:28:19.678 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:19.678 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:19.688 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:19.688 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 7 ms overall
17-03-17 21:28:19.688 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:19.688 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:28:19.688 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:28:19.688 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38450, sync = True, waitForSettling = False)
17-03-17 21:28:19.688 -07 000000459 INF: Z Motor: Moving to -0.176013 mm, started at -0.169603 mm, distance = -6.41 um
17-03-17 21:28:19.698 -07 000000459 INF: FPGA: Xmit ZDACW 38450\n [Z Motor]
17-03-17 21:28:19.698 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:28:19.708 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:19.708 -07 000000459 INF: FPGA: 'ZDACW 38450' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:28:19.708 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:28:19.718 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:28:19.718 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:19.718 -07 000000608 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:19.718 -07 000000475 INF: FPGA: Recv ZDACR 38450
17-03-17 21:28:19.718 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:19.718 -07 000000608 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:28:19.728 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:19.728 -07 000000459 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 21:28:19.728 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:19.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:28:19.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:28:19.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:19.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:28:19.768 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:28:19.768 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:19.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:19.768 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:28:19.768 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:28:19.778 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:28:19.888 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:19.888 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 21:28:20.098 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:28:20.098 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:28:20.138 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:20.148 -07 000000459 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:28:20.148 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:20.148 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:20.148 -07 000000608 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:28:20.148 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.190 mm/sec
17-03-17 21:28:21.098 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:21.098 -07 000000476 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:28:21.108 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:21.108 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:21.128 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:21.128 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:21.128 -07 000000608 INF: Y Motor: Moved to 68.2046 after 1436 ms (table move)
17-03-17 21:28:21.128 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176013 mm (DAC = 38450)
17-03-17 21:28:21.128 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36693
17-03-17 21:28:21.138 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:21.138 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.138 -07 000000424 INF: FPGA: Recv ZSGSRD 36688
17-03-17 21:28:21.148 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.148 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:28:21.158 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.158 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36693
17-03-17 21:28:21.168 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.168 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.168 -07 000000012 INF: FPGA: Recv ZSGSRD 36693
17-03-17 21:28:21.178 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.178 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:28:21.188 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.188 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36683
17-03-17 21:28:21.198 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.198 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.198 -07 000000431 INF: FPGA: Recv ZSGSRD 36690
17-03-17 21:28:21.208 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.208 -07 000000547 INF: FPGA: Recv ZSGSRD 36687
17-03-17 21:28:21.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:21.218 -07 000000458 INF: FPGA: Recv ZSGSRD 36685
17-03-17 21:28:21.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.228 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:21.228 -07 000000480 INF: FPGA: Recv ZPIEZORD 33051
17-03-17 21:28:21.238 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.238 -07 000000626 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.1 V.
17-03-17 21:28:21.238 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36689 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36689 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36683 (-175.1 uncal um), Max = 36693 (-175.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:28:21.238 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36689, posNoise = 4, negNoise = 6
17-03-17 21:28:21.238 -07 000000626 INF: Z Motor: After move to -0.176013, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:21.238 -07 000000626 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:28:21.238 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:21.288 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:28:21.288 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:21.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:21.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:21.288 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:21.288 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:21.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:21.288 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:21.288 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:21.288 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:21.298 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:21.298 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:21.298 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:28:21.298 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:28:21.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:21.348 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:21.548 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:21.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:21.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:21.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:21.588 -07 000000459 INF: FPGA: Recv @CAMSNAP 282
17-03-17 21:28:21.588 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:21.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 21:28:21.648 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.008536,
17-03-17 21:28:21.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:28:21.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:21.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:21.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:28:21.688 -07 000000501 INF: Autofocus start
17-03-17 21:28:21.688 -07 000000501 INF: MeasureProfile start
17-03-17 21:28:21.698 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:21.698 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:21.698 -07 000000501 INF: MeasureProfile done
17-03-17 21:28:21.698 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:28:21.698 -07 000000501 INF: Autofocus finished
17-03-17 21:28:21.708 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:28:21.708 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:21.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:21.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:21.908 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:21.908 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:28:21.908 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.176021271280203. ----------
17-03-17 21:28:21.908 -07 000000610 INF: Cycle	51	Tile	11	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:21.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36947, sync = True, waitForSettling = True)
17-03-17 21:28:21.918 -07 000000610 INF: Z Motor: Moving to -0.169133 mm, started at -0.176021 mm, distance = 6.89 um
17-03-17 21:28:21.918 -07 000000610 INF: FPGA: Xmit ZDACW 36947\n [Z Motor]
17-03-17 21:28:21.918 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:28:21.928 -07 000000610 INF: FPGA: 'ZDACW 36947' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:21.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:21.928 -07 000000480 INF: FPGA: Recv ZDACR 36947
17-03-17 21:28:21.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:21.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:22.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.088 -07 000000608 INF: FPGA: Recv ZSGSRD 35620
17-03-17 21:28:22.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.098 -07 000000475 INF: FPGA: Recv ZSGSRD 35615
17-03-17 21:28:22.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.108 -07 000000424 INF: FPGA: Recv ZSGSRD 35613
17-03-17 21:28:22.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.118 -07 000000459 INF: FPGA: Recv ZSGSRD 35621
17-03-17 21:28:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.128 -07 000000480 INF: FPGA: Recv ZSGSRD 35617
17-03-17 21:28:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.138 -07 000000415 INF: FPGA: Recv ZSGSRD 35621
17-03-17 21:28:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:22.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.148 -07 000000458 INF: FPGA: Recv ZSGSRD 35619
17-03-17 21:28:22.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.158 -07 000000475 INF: FPGA: Recv ZSGSRD 35617
17-03-17 21:28:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.168 -07 000000458 INF: FPGA: Recv ZSGSRD 35622
17-03-17 21:28:22.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:22.178 -07 000000569 INF: FPGA: Recv ZSGSRD 35616
17-03-17 21:28:22.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:22.188 -07 000000415 INF: FPGA: Recv ZPIEZORD 31597
17-03-17 21:28:22.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:22.198 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -8.9 V.
17-03-17 21:28:22.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35618 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35618 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35613 (-168.2 uncal um), Max = 35622 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:28:22.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35618, posNoise = 4, negNoise = 5
17-03-17 21:28:22.198 -07 000000610 INF: Z Motor: After move to -0.169133, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:22.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:28:22.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:22.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:22.198 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:22.198 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:22.198 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:22.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:22.198 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:22.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:22.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:22.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:22.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:28:22.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:22.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:22.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:22.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:22.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:22.218 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:28:22.218 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:28:22.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:28:22.218 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:28:22.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37124 150\n [Camera]
17-03-17 21:28:22.418 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:22.858 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:22.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:22.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:22.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:22.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:22.858 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:22.858 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:22.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:22.868 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:22.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:28:23.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37124 817
17-03-17 21:28:23.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:23.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:28:23.248 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:28:23.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:23.248 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:28:23.248 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:28:23.248 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:23.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:23.258 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:28:23.258 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:23.258 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:28:23.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:23.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:23.408 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:23.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:23.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:23.408 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:23.418 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:23.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:28:23.418 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:23.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:28:23.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:28:23.598 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:23.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37124 150' command took 2 ms to send, 1364 ms to get response, and 1374 ms overall
17-03-17 21:28:23.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:23.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169140940076377. ------
17-03-17 21:28:23.718 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:23.718 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17572 mm
17-03-17 21:28:23.718 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:23.718 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:23.728 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:23.728 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:23.728 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:28:23.728 -07 000000415 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:28:23.728 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38387, sync = True, waitForSettling = False)
17-03-17 21:28:23.728 -07 000000626 INF: Z Motor: Moving to -0.175724 mm, started at -0.169141 mm, distance = -6.58 um
17-03-17 21:28:23.738 -07 000000626 INF: FPGA: Xmit ZDACW 38387\n [Z Motor]
17-03-17 21:28:23.738 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:28:23.748 -07 000000626 INF: FPGA: 'ZDACW 38387' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:23.748 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:23.748 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:28:23.758 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:23.758 -07 000000415 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:23.758 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:23.758 -07 000000476 INF: FPGA: Recv ZDACR 38387
17-03-17 21:28:23.758 -07 000000415 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:23.758 -07 000000415 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:28:23.768 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:23.768 -07 000000626 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:28:23.768 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:23.808 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:28:23.808 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:28:23.808 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:23.818 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:28:23.818 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:28:23.818 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:23.818 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:23.818 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:28:23.818 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:28:23.828 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:28:23.928 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:23.928 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:24.138 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:28:24.138 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 21:28:24.178 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:24.178 -07 000000476 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:28:24.188 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:24.188 -07 000000415 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:24.188 -07 000000415 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:28:24.188 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.188 mm/sec
17-03-17 21:28:25.138 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:25.138 -07 000000569 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:28:25.148 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:25.148 -07 000000415 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:25.168 -07 000000415 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:25.168 -07 000000415 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:28:25.168 -07 000000415 INF: Y Motor: Moved to 69.0269 after 1443 ms (table move)
17-03-17 21:28:25.168 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175724 mm (DAC = 38387)
17-03-17 21:28:25.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.178 -07 000000429 INF: FPGA: Recv ZSGSRD 36645
17-03-17 21:28:25.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:25.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.178 -07 000000438 INF: FPGA: Recv ZSGSRD 36646
17-03-17 21:28:25.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36647
17-03-17 21:28:25.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.198 -07 000000431 INF: FPGA: Recv ZSGSRD 36648
17-03-17 21:28:25.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.208 -07 000000569 INF: FPGA: Recv ZSGSRD 36644
17-03-17 21:28:25.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.218 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36640
17-03-17 21:28:25.228 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.228 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.228 -07 000000626 INF: FPGA: Recv ZSGSRD 36643
17-03-17 21:28:25.238 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.238 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36639
17-03-17 21:28:25.248 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.248 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.248 -07 000000459 INF: FPGA: Recv ZSGSRD 36644
17-03-17 21:28:25.258 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.258 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:25.258 -07 000000012 INF: FPGA: Recv ZSGSRD 36645
17-03-17 21:28:25.268 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.268 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:25.268 -07 000000608 INF: FPGA: Recv ZPIEZORD 33017
17-03-17 21:28:25.278 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.278 -07 000000424 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.0 V.
17-03-17 21:28:25.278 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36644 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36644 (-174.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36639 (-174.8 uncal um), Max = 36648 (-174.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:28:25.278 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36644, posNoise = 4, negNoise = 5
17-03-17 21:28:25.278 -07 000000424 INF: Z Motor: After move to -0.175724, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:25.278 -07 000000424 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:28:25.278 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:25.328 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:28:25.328 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:25.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:25.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:25.328 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:25.328 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:25.328 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:25.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:25.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:25.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:25.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:25.338 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:25.348 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:28:25.348 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:28:25.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:25.398 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:25.598 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:25.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:25.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:25.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:25.638 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:25.638 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:25.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:28:25.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 21:28:25.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:25.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:28:25.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 21:28:25.738 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:25.738 -07 000000480 INF: Autofocus start
17-03-17 21:28:25.738 -07 000000480 INF: MeasureProfile start
17-03-17 21:28:25.738 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:25.748 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:25.748 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:25.748 -07 000000480 INF: MeasureProfile done
17-03-17 21:28:25.748 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:25.748 -07 000000480 INF: Autofocus finished
17-03-17 21:28:25.948 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:25.948 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:25.948 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175732181733823. ----------
17-03-17 21:28:25.948 -07 000000610 INF: Cycle	51	Tile	12	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:25.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36901, sync = True, waitForSettling = True)
17-03-17 21:28:25.958 -07 000000610 INF: Z Motor: Moving to -0.168922 mm, started at -0.175732 mm, distance = 6.81 um
17-03-17 21:28:25.958 -07 000000610 INF: FPGA: Xmit ZDACW 36901\n [Z Motor]
17-03-17 21:28:25.958 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:28:25.968 -07 000000610 INF: FPGA: 'ZDACW 36901' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:25.968 -07 000000627 INF: FPGA: Recv ZDACR 36901
17-03-17 21:28:25.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:25.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:26.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.128 -07 000000501 INF: FPGA: Recv ZSGSRD 35585
17-03-17 21:28:26.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:26.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.138 -07 000000476 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:28:26.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.148 -07 000000512 INF: FPGA: Recv ZSGSRD 35584
17-03-17 21:28:26.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35580
17-03-17 21:28:26.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35585
17-03-17 21:28:26.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35583
17-03-17 21:28:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.188 -07 000000424 INF: FPGA: Recv ZSGSRD 35590
17-03-17 21:28:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35584
17-03-17 21:28:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35586
17-03-17 21:28:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:26.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35587
17-03-17 21:28:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:26.228 -07 000000475 INF: FPGA: Recv ZPIEZORD 31588
17-03-17 21:28:26.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:26.238 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -8.8 V.
17-03-17 21:28:26.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35585 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35585 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35590 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:28:26.238 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35585, posNoise = 5, negNoise = 5
17-03-17 21:28:26.238 -07 000000610 INF: Z Motor: After move to -0.168922, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:26.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:28:26.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:26.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:26.238 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:26.238 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:26.238 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:26.238 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:26.238 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:26.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:26.238 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:26.238 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:26.238 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:28:26.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:26.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:26.248 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:26.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:26.248 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:26.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:26.258 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:26.258 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:28:26.258 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:26.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 37078 150\n [Camera]
17-03-17 21:28:26.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:26.878 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:26.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:26.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:26.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:26.888 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:26.898 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:26.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:26.898 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:26.898 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:26.898 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 21:28:26.898 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:26.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:27.018 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.014009,
17-03-17 21:28:27.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37078 817
17-03-17 21:28:27.228 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:27.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:28:27.268 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:28:27.268 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:27.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:28:27.278 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:28:27.278 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:27.278 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:27.278 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:28:27.278 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:27.288 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:28:27.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:27.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:27.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:27.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:27.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:28:27.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:27.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:27.438 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:27.438 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:27.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:28:27.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:28:27.628 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:27.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 37078 150' command took 2 ms to send, 1367 ms to get response, and 1374 ms overall
17-03-17 21:28:27.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:27.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168928941075699. ------
17-03-17 21:28:27.638 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:27.638 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17525 mm
17-03-17 21:28:27.638 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:27.638 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38283, sync = True, waitForSettling = False)
17-03-17 21:28:27.638 -07 000000415 INF: Z Motor: Moving to -0.175248 mm, started at -0.168929 mm, distance = -6.32 um
17-03-17 21:28:27.638 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:27.638 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:28:27.638 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:28:27.648 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:27.648 -07 000000415 INF: FPGA: Xmit ZDACW 38283\n [Z Motor]
17-03-17 21:28:27.648 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:28:27.658 -07 000000415 INF: FPGA: 'ZDACW 38283' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:28:27.658 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:27.658 -07 000000459 INF: FPGA: Recv ZDACR 38283
17-03-17 21:28:27.668 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:27.668 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:27.668 -07 000000415 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 21:28:27.668 -07 000000012 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:28:27.678 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:27.678 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 21:28:27.678 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:27.678 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:27.678 -07 000000576 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:28:27.688 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:27.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:28:27.838 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:28:27.838 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:27.838 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:28:27.838 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:28:27.838 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:27.838 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:27.838 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:28:27.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:28:27.848 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:28:27.878 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:27.878 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 21:28:28.058 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:28:28.058 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:28:28.098 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:28.098 -07 000000431 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:28:28.108 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:28.108 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:28.108 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:28:28.108 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.185 mm/sec
17-03-17 21:28:29.058 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:29.058 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:28:29.068 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:29.068 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:29.088 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:29.088 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:29.088 -07 000000576 INF: Y Motor: Moved to 69.8628 after 1447 ms (table move)
17-03-17 21:28:29.088 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175248 mm (DAC = 38283)
17-03-17 21:28:29.088 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.098 -07 000000569 INF: FPGA: Recv ZSGSRD 36575
17-03-17 21:28:29.098 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:29.098 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36572
17-03-17 21:28:29.108 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.108 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.108 -07 000000424 INF: FPGA: Recv ZSGSRD 36570
17-03-17 21:28:29.118 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.118 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.118 -07 000000480 INF: FPGA: Recv ZSGSRD 36568
17-03-17 21:28:29.128 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.128 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.128 -07 000000576 INF: FPGA: Recv ZSGSRD 36574
17-03-17 21:28:29.138 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.138 -07 000000438 INF: FPGA: Recv ZSGSRD 36566
17-03-17 21:28:29.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.148 -07 000000475 INF: FPGA: Recv ZSGSRD 36562
17-03-17 21:28:29.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.158 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.158 -07 000000459 INF: FPGA: Recv ZSGSRD 36572
17-03-17 21:28:29.168 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.168 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36567
17-03-17 21:28:29.178 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.178 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:29.178 -07 000000512 INF: FPGA: Recv ZSGSRD 36572
17-03-17 21:28:29.188 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.188 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:29.188 -07 000000382 INF: FPGA: Recv ZPIEZORD 32890
17-03-17 21:28:29.198 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.198 -07 000000476 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.2 V.
17-03-17 21:28:29.198 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36570 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36571 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36562 (-174.3 uncal um), Max = 36575 (-174.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:28:29.198 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36570, posNoise = 5, negNoise = 8
17-03-17 21:28:29.198 -07 000000476 INF: Z Motor: After move to -0.175248, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:29.198 -07 000000476 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:28:29.198 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:29.248 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:28:29.248 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:29.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:29.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:29.248 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:29.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:29.248 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:29.248 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:29.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:29.248 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:29.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:29.258 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:29.258 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:28:29.258 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:28:29.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:29.308 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:29.508 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:29.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:29.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:29.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:28:29.548 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:29.548 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:29.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:28:29.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:28:29.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:29.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:29.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:28:29.648 -07 000000576 INF: Autofocus start
17-03-17 21:28:29.648 -07 000000576 INF: MeasureProfile start
17-03-17 21:28:29.648 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:29.648 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:29.658 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:29.658 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:29.658 -07 000000576 INF: MeasureProfile done
17-03-17 21:28:29.658 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:29.658 -07 000000576 INF: Autofocus finished
17-03-17 21:28:29.858 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:29.858 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:28:29.858 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175256790035333. ----------
17-03-17 21:28:29.868 -07 000000610 INF: Cycle	51	Tile	13	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:29.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36798, sync = True, waitForSettling = True)
17-03-17 21:28:29.868 -07 000000610 INF: Z Motor: Moving to -0.168450 mm, started at -0.175257 mm, distance = 6.81 um
17-03-17 21:28:29.868 -07 000000610 INF: FPGA: Xmit ZDACW 36798\n [Z Motor]
17-03-17 21:28:29.868 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:28:29.878 -07 000000610 INF: FPGA: 'ZDACW 36798' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:29.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:29.878 -07 000000547 INF: FPGA: Recv ZDACR 36798
17-03-17 21:28:29.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:29.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:30.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.038 -07 000000475 INF: FPGA: Recv ZSGSRD 35511
17-03-17 21:28:30.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.048 -07 000000429 INF: FPGA: Recv ZSGSRD 35512
17-03-17 21:28:30.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.058 -07 000000431 INF: FPGA: Recv ZSGSRD 35513
17-03-17 21:28:30.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35509
17-03-17 21:28:30.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.078 -07 000000012 INF: FPGA: Recv ZSGSRD 35511
17-03-17 21:28:30.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.088 -07 000000501 INF: FPGA: Recv ZSGSRD 35516
17-03-17 21:28:30.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.098 -07 000000424 INF: FPGA: Recv ZSGSRD 35514
17-03-17 21:28:30.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.108 -07 000000547 INF: FPGA: Recv ZSGSRD 35512
17-03-17 21:28:30.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.118 -07 000000458 INF: FPGA: Recv ZSGSRD 35509
17-03-17 21:28:30.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:30.128 -07 000000480 INF: FPGA: Recv ZSGSRD 35513
17-03-17 21:28:30.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:30.138 -07 000000459 INF: FPGA: Recv ZPIEZORD 31488
17-03-17 21:28:30.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:30.148 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.615 V. Piezo Error = -8.9 V.
17-03-17 21:28:30.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35512 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35512 (-167.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35509 (-167.6 uncal um), Max = 35516 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:28:30.148 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35512, posNoise = 4, negNoise = 3
17-03-17 21:28:30.148 -07 000000610 INF: Z Motor: After move to -0.168450, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:30.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:28:30.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:30.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:30.148 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:30.148 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:30.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:30.148 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:30.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:30.148 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:30.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:30.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:30.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:30.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:30.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:30.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:30.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:28:30.158 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:30.168 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:28:30.168 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:28:30.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:28:30.168 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:28:30.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36974 150\n [Camera]
17-03-17 21:28:30.368 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:30.798 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:30.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:30.798 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:30.798 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:30.798 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:28:30.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:30.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:30.798 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:30.798 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:30.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:28:30.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36974 820
17-03-17 21:28:31.138 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:31.188 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:28:31.188 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:28:31.188 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:31.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:28:31.188 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:28:31.188 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:31.198 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:31.198 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:28:31.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:31.198 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:28:31.348 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:31.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:31.348 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:31.348 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:31.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:28:31.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:31.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:31.358 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:31.358 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:31.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:28:31.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:31.538 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:31.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36974 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-17 21:28:31.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:31.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.16845997358935. ------
17-03-17 21:28:31.548 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:31.548 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17487 mm
17-03-17 21:28:31.548 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:31.548 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:28:31.548 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:28:31.548 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:31.548 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38201, sync = True, waitForSettling = False)
17-03-17 21:28:31.548 -07 000000458 INF: Z Motor: Moving to -0.174873 mm, started at -0.168460 mm, distance = -6.41 um
17-03-17 21:28:31.558 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:31.558 -07 000000458 INF: FPGA: Xmit ZDACW 38201\n [Z Motor]
17-03-17 21:28:31.558 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:28:31.568 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:31.568 -07 000000458 INF: FPGA: 'ZDACW 38201' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:28:31.568 -07 000000480 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:28:31.578 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:28:31.578 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:31.578 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:31.578 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:31.578 -07 000000424 INF: Y Motor: Moving 1344 steps-20
17-03-17 21:28:31.588 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:31.588 -07 000000476 INF: FPGA: Recv ZDACR 38201
17-03-17 21:28:31.598 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:31.598 -07 000000458 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:28:31.598 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:31.748 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:28:31.748 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:28:31.748 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:31.748 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:28:31.748 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:28:31.778 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:31.778 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:28:31.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:28:31.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 21:28:31.848 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:31.858 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:28:31.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 21:28:31.878 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:31.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:31.978 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:28:31.978 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 21:28:32.008 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:32.018 -07 000000415 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:28:32.018 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:28:32.018 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:32.018 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:28:32.018 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.094 mm/sec
17-03-17 21:28:32.388 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.999021,
17-03-17 21:28:32.968 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:32.968 -07 000000476 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:28:32.978 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:32.978 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:32.998 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:32.998 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:32.998 -07 000000424 INF: Y Motor: Moved to 70.6880 after 1446 ms (table move)
17-03-17 21:28:32.998 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174873 mm (DAC = 38201)
17-03-17 21:28:32.998 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36521
17-03-17 21:28:33.008 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:33.008 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.008 -07 000000476 INF: FPGA: Recv ZSGSRD 36519
17-03-17 21:28:33.018 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.018 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.018 -07 000000627 INF: FPGA: Recv ZSGSRD 36497
17-03-17 21:28:33.028 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.028 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36508
17-03-17 21:28:33.038 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36510
17-03-17 21:28:33.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.048 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.048 -07 000000512 INF: FPGA: Recv ZSGSRD 36512
17-03-17 21:28:33.058 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.058 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.058 -07 000000576 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:28:33.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.068 -07 000000626 INF: FPGA: Recv ZSGSRD 36520
17-03-17 21:28:33.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.078 -07 000000627 INF: FPGA: Recv ZSGSRD 36518
17-03-17 21:28:33.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:33.088 -07 000000458 INF: FPGA: Recv ZSGSRD 36510
17-03-17 21:28:33.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.098 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:33.098 -07 000000475 INF: FPGA: Recv ZPIEZORD 32850
17-03-17 21:28:33.108 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.108 -07 000000501 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.1 V.
17-03-17 21:28:33.108 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36513 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 36497 (-173.9 uncal um), Max = 36521 (-174.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 16 (0.1 uncal um)
17-03-17 21:28:33.108 -07 000000501 INF: Z Motor: ADC noise = 16, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36513, posNoise = 8, negNoise = 16
17-03-17 21:28:33.108 -07 000000501 INF: Z Motor: After move to -0.174873, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:33.108 -07 000000501 INF: Z Motor: Settle wait time = 1448 ms, measure time = 104 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:28:33.108 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:33.158 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:28:33.158 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:33.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:33.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:33.158 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:33.158 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:33.158 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:33.158 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:33.158 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:33.158 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:33.168 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:33.168 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:33.178 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:28:33.178 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:28:33.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:33.218 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:33.418 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:33.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:33.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:33.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:33.458 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:33.458 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:33.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:28:33.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:28:33.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:33.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:33.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:28:33.658 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:33.658 -07 000000627 INF: Autofocus start
17-03-17 21:28:33.658 -07 000000627 INF: MeasureProfile start
17-03-17 21:28:33.658 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:33.668 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:33.668 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:33.668 -07 000000627 INF: MeasureProfile done
17-03-17 21:28:33.668 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:33.668 -07 000000627 INF: Autofocus finished
17-03-17 21:28:33.868 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:33.868 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:33.878 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174890609943253. ----------
17-03-17 21:28:33.878 -07 000000610 INF: Cycle	51	Tile	14	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:33.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36716, sync = True, waitForSettling = True)
17-03-17 21:28:33.878 -07 000000610 INF: Z Motor: Moving to -0.168075 mm, started at -0.174891 mm, distance = 6.82 um
17-03-17 21:28:33.878 -07 000000610 INF: FPGA: Xmit ZDACW 36716\n [Z Motor]
17-03-17 21:28:33.888 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:28:33.888 -07 000000610 INF: FPGA: 'ZDACW 36716' command took 2 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:33.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:33.888 -07 000000431 INF: FPGA: Recv ZDACR 36716
17-03-17 21:28:33.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:33.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:34.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.048 -07 000000424 INF: FPGA: Recv ZSGSRD 35454
17-03-17 21:28:34.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:34.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.058 -07 000000429 INF: FPGA: Recv ZSGSRD 35456
17-03-17 21:28:34.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.068 -07 000000501 INF: FPGA: Recv ZSGSRD 35456
17-03-17 21:28:34.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35451
17-03-17 21:28:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.088 -07 000000512 INF: FPGA: Recv ZSGSRD 35453
17-03-17 21:28:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.098 -07 000000608 INF: FPGA: Recv ZSGSRD 35454
17-03-17 21:28:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.108 -07 000000512 INF: FPGA: Recv ZSGSRD 35451
17-03-17 21:28:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.118 -07 000000424 INF: FPGA: Recv ZSGSRD 35456
17-03-17 21:28:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.128 -07 000000458 INF: FPGA: Recv ZSGSRD 35454
17-03-17 21:28:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:34.138 -07 000000431 INF: FPGA: Recv ZSGSRD 35453
17-03-17 21:28:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:34.148 -07 000000415 INF: FPGA: Recv ZPIEZORD 31437
17-03-17 21:28:34.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:34.158 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -8.9 V.
17-03-17 21:28:34.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35454 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35454 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35451 (-167.2 uncal um), Max = 35456 (-167.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:28:34.158 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35454, posNoise = 2, negNoise = 3
17-03-17 21:28:34.158 -07 000000610 INF: Z Motor: After move to -0.168075, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:34.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:28:34.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:34.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:34.158 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:34.158 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:34.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:34.158 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:34.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:34.158 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:34.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:34.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:34.158 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:28:34.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:34.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:34.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:34.168 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:34.168 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:34.178 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:28:34.178 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:28:34.178 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:28:34.178 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:28:34.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36893 150\n [Camera]
17-03-17 21:28:34.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:34.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:34.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:34.808 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:34.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:34.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:34.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:34.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:34.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:34.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:34.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:28:35.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36893 817
17-03-17 21:28:35.158 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:35.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:28:35.198 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:28:35.198 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:35.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:28:35.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:28:35.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:35.198 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:35.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:35.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:28:35.208 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:28:35.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:35.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:35.358 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:35.368 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:35.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:35.368 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:35.368 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:35.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:28:35.378 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:35.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:28:35.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:35.558 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:35.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36893 150' command took 2 ms to send, 1370 ms to get response, and 1375 ms overall
17-03-17 21:28:35.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:35.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168087369285128. ------
17-03-17 21:28:35.558 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:35.558 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17426 mm
17-03-17 21:28:35.558 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:35.568 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:35.568 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:35.568 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:28:35.568 -07 000000424 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:28:35.568 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:35.568 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38068, sync = True, waitForSettling = False)
17-03-17 21:28:35.568 -07 000000608 INF: Z Motor: Moving to -0.174264 mm, started at -0.168087 mm, distance = -6.18 um
17-03-17 21:28:35.568 -07 000000576 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:28:35.578 -07 000000608 INF: FPGA: Xmit ZDACW 38068\n [Z Motor]
17-03-17 21:28:35.688 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:35.688 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:35.688 -07 000000424 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:35.688 -07 000000424 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:28:35.698 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:35.698 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:28:35.698 -07 000000608 INF: FPGA: 'ZDACW 38068' command took 118 ms to send, 1 ms to get response, and 129 ms overall
17-03-17 21:28:35.708 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:35.718 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:35.718 -07 000000438 INF: FPGA: Recv ZDACR 38068
17-03-17 21:28:35.728 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:28:35.728 -07 000000608 INF: Z Motor: MoveAbsStepped took 158 ms (did NOT wait for settling yet))
17-03-17 21:28:35.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:28:35.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:28:35.758 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:35.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:28:35.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:28:35.758 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:35.768 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:35.768 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:28:35.768 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:35.768 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:28:35.908 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:35.908 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 341 ms overall
17-03-17 21:28:36.068 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:28:36.068 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:28:36.108 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:36.108 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:28:36.118 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:36.118 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:36.118 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:28:36.118 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.234 mm/sec
17-03-17 21:28:36.878 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:36.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:37.068 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:37.068 -07 000000382 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:28:37.078 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:37.078 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:37.098 -07 000000424 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:37.098 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:37.098 -07 000000424 INF: Y Motor: Moved to 71.5186 after 1533 ms (table move)
17-03-17 21:28:37.098 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174264 mm (DAC = 38068)
17-03-17 21:28:37.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.108 -07 000000475 INF: FPGA: Recv ZSGSRD 36427
17-03-17 21:28:37.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:28:37.108 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.108 -07 000000382 INF: FPGA: Recv ZSGSRD 36412
17-03-17 21:28:37.118 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:37.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.118 -07 000000569 INF: FPGA: Recv ZSGSRD 36414
17-03-17 21:28:37.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.128 -07 000000501 INF: FPGA: Recv ZSGSRD 36421
17-03-17 21:28:37.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36415
17-03-17 21:28:37.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.148 -07 000000626 INF: FPGA: Recv ZSGSRD 36423
17-03-17 21:28:37.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.158 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.158 -07 000000458 INF: FPGA: Recv ZSGSRD 36418
17-03-17 21:28:37.168 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.168 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.168 -07 000000012 INF: FPGA: Recv ZSGSRD 36413
17-03-17 21:28:37.178 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36415
17-03-17 21:28:37.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.188 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:37.188 -07 000000438 INF: FPGA: Recv ZSGSRD 36416
17-03-17 21:28:37.198 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:37.198 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:37.198 -07 000000480 INF: FPGA: Recv ZPIEZORD 32747
17-03-17 21:28:37.208 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.208 -07 000000459 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.1 V.
17-03-17 21:28:37.208 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36417 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36416 (-173.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36412 (-173.4 uncal um), Max = 36427 (-173.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:28:37.208 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36417, posNoise = 10, negNoise = 5
17-03-17 21:28:37.208 -07 000000459 INF: Z Motor: After move to -0.174264, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:37.208 -07 000000459 INF: Z Motor: Settle wait time = 1536 ms, measure time = 102 ms (allowed 150 ms), total time = 1638 ms
17-03-17 21:28:37.208 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:37.258 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1692 ms
17-03-17 21:28:37.258 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:37.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:37.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:37.258 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:37.258 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:37.258 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:37.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:37.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:37.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:37.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:37.258 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:37.268 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:28:37.268 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:28:37.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:37.318 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:37.518 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:37.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:37.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:37.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:37.558 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:37.558 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:37.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:28:37.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:28:37.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:37.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:37.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:28:37.658 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:37.658 -07 000000501 INF: Autofocus start
17-03-17 21:28:37.658 -07 000000501 INF: MeasureProfile start
17-03-17 21:28:37.658 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:37.668 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:37.668 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:37.678 -07 000000501 INF: MeasureProfile done
17-03-17 21:28:37.678 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:28:37.678 -07 000000501 INF: Autofocus finished
17-03-17 21:28:37.758 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.989471,
17-03-17 21:28:37.868 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:37.868 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:37.868 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174273885577644. ----------
17-03-17 21:28:37.868 -07 000000610 INF: Cycle	51	Tile	15	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:37.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36618, sync = True, waitForSettling = True)
17-03-17 21:28:37.878 -07 000000610 INF: Z Motor: Moving to -0.167626 mm, started at -0.174274 mm, distance = 6.65 um
17-03-17 21:28:37.878 -07 000000610 INF: FPGA: Xmit ZDACW 36618\n [Z Motor]
17-03-17 21:28:37.878 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:28:37.888 -07 000000610 INF: FPGA: 'ZDACW 36618' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:37.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:37.888 -07 000000459 INF: FPGA: Recv ZDACR 36618
17-03-17 21:28:37.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:37.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:38.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35389
17-03-17 21:28:38.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:38.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.058 -07 000000501 INF: FPGA: Recv ZSGSRD 35380
17-03-17 21:28:38.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.088 -07 000000458 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:28:38.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:38.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.098 -07 000000476 INF: FPGA: Recv ZSGSRD 35390
17-03-17 21:28:38.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.128 -07 000000512 INF: FPGA: Recv ZSGSRD 35385
17-03-17 21:28:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.138 -07 000000569 INF: FPGA: Recv ZSGSRD 35377
17-03-17 21:28:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:28:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35386
17-03-17 21:28:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.178 -07 000000501 INF: FPGA: Recv ZSGSRD 35385
17-03-17 21:28:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:38.188 -07 000000547 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:28:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:38.198 -07 000000475 INF: FPGA: Recv ZPIEZORD 31350
17-03-17 21:28:38.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:38.208 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.9 V.
17-03-17 21:28:38.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35384 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35384 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35377 (-166.7 uncal um), Max = 35390 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:28:38.208 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35384, posNoise = 6, negNoise = 7
17-03-17 21:28:38.208 -07 000000610 INF: Z Motor: After move to -0.167626, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:38.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 21:28:38.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:38.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:38.208 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:38.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:38.208 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:38.208 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:38.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:38.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:38.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:28:38.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:38.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:38.208 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:38.218 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:28:38.218 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:38.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:38.218 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:38.218 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:28:38.218 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:28:38.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:38.228 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:28:38.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36795 150\n [Camera]
17-03-17 21:28:38.428 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:38.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:38.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:38.858 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:38.858 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:38.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:38.858 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:38.868 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:38.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:38.868 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:38.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:28:39.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36795 817
17-03-17 21:28:39.198 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:39.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:28:39.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:28:39.268 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:28:39.268 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:39.268 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:28:39.268 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:39.278 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:39.278 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:39.278 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 21:28:39.278 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:28:39.408 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:39.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:39.408 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:39.408 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:39.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:28:39.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:39.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:39.408 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:39.408 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:39.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:28:39.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:39.598 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:39.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36795 150' command took 2 ms to send, 1367 ms to get response, and 1375 ms overall
17-03-17 21:28:39.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:39.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167637674435205. ------
17-03-17 21:28:39.608 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:39.608 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17402 mm
17-03-17 21:28:39.608 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:39.608 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:28:39.608 -07 000000458 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:28:39.608 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38015, sync = True, waitForSettling = False)
17-03-17 21:28:39.608 -07 000000501 INF: Z Motor: Moving to -0.174022 mm, started at -0.167638 mm, distance = -6.38 um
17-03-17 21:28:39.608 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:39.618 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:39.618 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:39.618 -07 000000431 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:28:39.628 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:28:39.628 -07 000000458 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:39.628 -07 000000458 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:39.628 -07 000000458 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:28:39.628 -07 000000501 INF: FPGA: Xmit ZDACW 38015\n [Z Motor]
17-03-17 21:28:39.628 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:28:39.638 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:39.638 -07 000000501 INF: FPGA: 'ZDACW 38015' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:28:39.648 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:39.658 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:39.658 -07 000000626 INF: FPGA: Recv ZDACR 38015
17-03-17 21:28:39.668 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:39.668 -07 000000501 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:28:39.818 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:28:39.818 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:28:39.818 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:39.818 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:28:39.818 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:28:39.818 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:39.818 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:39.818 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:28:39.818 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:28:39.828 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:28:39.838 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:39.838 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:28:40.018 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:28:40.018 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:28:40.058 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:40.058 -07 000000415 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:28:40.068 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:40.068 -07 000000458 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:40.068 -07 000000458 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:28:40.068 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:28:41.018 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:41.018 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:28:41.028 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:41.028 -07 000000458 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:41.058 -07 000000458 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:41.058 -07 000000458 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:41.058 -07 000000458 INF: Y Motor: Moved to 72.3491 after 1445 ms (table move)
17-03-17 21:28:41.058 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174022 mm (DAC = 38015)
17-03-17 21:28:41.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.058 -07 000000382 INF: FPGA: Recv ZSGSRD 36387
17-03-17 21:28:41.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:41.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.068 -07 000000438 INF: FPGA: Recv ZSGSRD 36378
17-03-17 21:28:41.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.078 -07 000000626 INF: FPGA: Recv ZSGSRD 36382
17-03-17 21:28:41.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.088 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.088 -07 000000458 INF: FPGA: Recv ZSGSRD 36383
17-03-17 21:28:41.098 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36372
17-03-17 21:28:41.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.108 -07 000000501 INF: FPGA: Recv ZSGSRD 36372
17-03-17 21:28:41.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36376
17-03-17 21:28:41.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.128 -07 000000576 INF: FPGA: Recv ZSGSRD 36376
17-03-17 21:28:41.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.138 -07 000000438 INF: FPGA: Recv ZSGSRD 36381
17-03-17 21:28:41.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:41.148 -07 000000627 INF: FPGA: Recv ZSGSRD 36378
17-03-17 21:28:41.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.158 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:41.158 -07 000000424 INF: FPGA: Recv ZPIEZORD 32674
17-03-17 21:28:41.168 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.168 -07 000000569 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.2 V.
17-03-17 21:28:41.168 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36378 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36378 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36372 (-173.1 uncal um), Max = 36387 (-173.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:28:41.168 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36378, posNoise = 9, negNoise = 6
17-03-17 21:28:41.168 -07 000000569 INF: Z Motor: After move to -0.174022, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:41.168 -07 000000569 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:28:41.168 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:41.218 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:28:41.218 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:41.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:41.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:41.218 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:41.218 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:41.218 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:41.218 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:41.218 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:41.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:41.228 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:41.228 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:41.228 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:28:41.228 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:28:41.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:41.278 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:41.478 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:41.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:41.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:41.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:28:41.518 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:41.518 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:41.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:28:41.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:28:41.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:41.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:41.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:28:41.618 -07 000000459 INF: Autofocus start
17-03-17 21:28:41.618 -07 000000459 INF: MeasureProfile start
17-03-17 21:28:41.618 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:41.618 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:41.628 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:41.628 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:41.628 -07 000000459 INF: MeasureProfile done
17-03-17 21:28:41.628 -07 000000459 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:28:41.628 -07 000000459 INF: Autofocus finished
17-03-17 21:28:41.828 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:41.828 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:41.828 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.174023341304115. ----------
17-03-17 21:28:41.828 -07 000000610 INF: Cycle	51	Tile	16	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:41.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36495, sync = True, waitForSettling = True)
17-03-17 21:28:41.838 -07 000000610 INF: Z Motor: Moving to -0.167063 mm, started at -0.174023 mm, distance = 6.96 um
17-03-17 21:28:41.838 -07 000000610 INF: FPGA: Xmit ZDACW 36495\n [Z Motor]
17-03-17 21:28:41.838 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:28:41.848 -07 000000610 INF: FPGA: 'ZDACW 36495' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:41.848 -07 000000547 INF: FPGA: Recv ZDACR 36495
17-03-17 21:28:41.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:41.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:41.878 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:41.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:42.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.008 -07 000000608 INF: FPGA: Recv ZSGSRD 35296
17-03-17 21:28:42.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35295
17-03-17 21:28:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.028 -07 000000627 INF: FPGA: Recv ZSGSRD 35296
17-03-17 21:28:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.038 -07 000000415 INF: FPGA: Recv ZSGSRD 35291
17-03-17 21:28:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.048 -07 000000627 INF: FPGA: Recv ZSGSRD 35295
17-03-17 21:28:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.058 -07 000000415 INF: FPGA: Recv ZSGSRD 35299
17-03-17 21:28:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35297
17-03-17 21:28:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35297
17-03-17 21:28:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.088 -07 000000475 INF: FPGA: Recv ZSGSRD 35298
17-03-17 21:28:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:42.098 -07 000000501 INF: FPGA: Recv ZSGSRD 35296
17-03-17 21:28:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:42.108 -07 000000512 INF: FPGA: Recv ZPIEZORD 31230
17-03-17 21:28:42.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:42.118 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.0 V.
17-03-17 21:28:42.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35291 (-166.2 uncal um), Max = 35299 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:28:42.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 3, negNoise = 5
17-03-17 21:28:42.118 -07 000000610 INF: Z Motor: After move to -0.167063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:42.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:28:42.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:42.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:42.118 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:42.118 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:42.118 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:42.118 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:42.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:42.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:42.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:28:42.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:42.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:28:42.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:42.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:42.128 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:42.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:42.128 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:42.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:42.138 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:42.138 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:28:42.138 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:42.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36671 150\n [Camera]
17-03-17 21:28:42.338 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:42.768 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:42.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:42.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:42.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:42.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 21:28:42.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:42.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:42.768 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:42.768 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:42.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:28:42.958 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36671 817
17-03-17 21:28:43.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:43.128 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.001704,
17-03-17 21:28:43.158 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:28:43.158 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:28:43.158 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:43.158 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:28:43.158 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:28:43.158 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:43.168 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:43.168 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:28:43.168 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:43.178 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:28:43.318 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:43.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:43.318 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:43.318 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:43.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 21:28:43.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:43.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:43.318 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:43.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:43.328 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:28:43.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:28:43.508 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:43.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36671 150' command took 2 ms to send, 1368 ms to get response, and 1374 ms overall
17-03-17 21:28:43.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:43.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.16707234376673. ------
17-03-17 21:28:43.518 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:43.518 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17356 mm
17-03-17 21:28:43.518 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:43.638 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:43.638 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 21:28:43.638 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:43.638 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:28:43.638 -07 000000459 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:28:43.638 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37915, sync = True, waitForSettling = False)
17-03-17 21:28:43.638 -07 000000431 INF: Z Motor: Moving to -0.173564 mm, started at -0.167072 mm, distance = -6.49 um
17-03-17 21:28:43.648 -07 000000431 INF: FPGA: Xmit ZDACW 37915\n [Z Motor]
17-03-17 21:28:43.648 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:28:43.658 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:43.658 -07 000000431 INF: FPGA: 'ZDACW 37915' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:28:43.658 -07 000000480 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:28:43.668 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:28:43.668 -07 000000459 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:43.668 -07 000000459 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:43.668 -07 000000459 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:28:43.668 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:43.668 -07 000000458 INF: FPGA: Recv ZDACR 37915
17-03-17 21:28:43.678 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:43.678 -07 000000431 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 21:28:43.678 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:43.718 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:28:43.718 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:28:43.718 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:43.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:28:43.718 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:28:43.718 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:43.718 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:43.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:28:43.728 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:28:43.728 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:28:43.848 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:43.848 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 203 ms overall
17-03-17 21:28:44.048 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:28:44.048 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:28:44.088 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:44.088 -07 000000382 INF: FPGA: Recv YRDPOS 149863
17-03-17 21:28:44.098 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:44.098 -07 000000459 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:44.098 -07 000000459 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 21:28:44.098 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.174 mm/sec
17-03-17 21:28:45.048 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:45.048 -07 000000438 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:28:45.058 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:45.058 -07 000000459 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:45.078 -07 000000459 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:45.078 -07 000000459 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:28:45.078 -07 000000459 INF: Y Motor: Moved to 73.1758 after 1436 ms (table move)
17-03-17 21:28:45.078 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173564 mm (DAC = 37915)
17-03-17 21:28:45.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.088 -07 000000429 INF: FPGA: Recv ZSGSRD 36318
17-03-17 21:28:45.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:28:45.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.088 -07 000000415 INF: FPGA: Recv ZSGSRD 36304
17-03-17 21:28:45.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.098 -07 000000480 INF: FPGA: Recv ZSGSRD 36299
17-03-17 21:28:45.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:45.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.108 -07 000000501 INF: FPGA: Recv ZSGSRD 36309
17-03-17 21:28:45.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.118 -07 000000458 INF: FPGA: Recv ZSGSRD 36314
17-03-17 21:28:45.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.128 -07 000000459 INF: FPGA: Recv ZSGSRD 36311
17-03-17 21:28:45.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.138 -07 000000424 INF: FPGA: Recv ZSGSRD 36305
17-03-17 21:28:45.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.148 -07 000000480 INF: FPGA: Recv ZSGSRD 36304
17-03-17 21:28:45.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.158 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.158 -07 000000012 INF: FPGA: Recv ZSGSRD 36305
17-03-17 21:28:45.168 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.168 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:45.168 -07 000000458 INF: FPGA: Recv ZSGSRD 36304
17-03-17 21:28:45.178 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.178 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:45.178 -07 000000429 INF: FPGA: Recv ZPIEZORD 32566
17-03-17 21:28:45.188 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.188 -07 000000512 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.785 V. Piezo Error = -8.3 V.
17-03-17 21:28:45.188 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36307 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36305 (-172.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36299 (-172.6 uncal um), Max = 36318 (-172.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:28:45.188 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36307, posNoise = 11, negNoise = 8
17-03-17 21:28:45.188 -07 000000512 INF: Z Motor: After move to -0.173564, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:45.188 -07 000000512 INF: Z Motor: Settle wait time = 1439 ms, measure time = 103 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:28:45.188 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:45.238 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 21:28:45.238 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:45.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:45.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:45.238 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:45.238 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:45.238 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:45.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:45.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:45.238 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:45.248 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:45.248 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:45.258 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:28:45.258 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:28:45.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:45.308 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:45.508 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:45.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:45.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:45.548 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:45.548 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:45.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:28:45.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:28:45.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:45.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:45.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:28:45.648 -07 000000382 INF: Autofocus start
17-03-17 21:28:45.648 -07 000000382 INF: MeasureProfile start
17-03-17 21:28:45.648 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:45.648 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:45.658 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:45.658 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:45.658 -07 000000382 INF: MeasureProfile done
17-03-17 21:28:45.658 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:45.658 -07 000000382 INF: Autofocus finished
17-03-17 21:28:45.858 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:45.858 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:45.858 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17356722224205. ----------
17-03-17 21:28:45.858 -07 000000610 INF: Cycle	51	Tile	17	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:45.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36430, sync = True, waitForSettling = True)
17-03-17 21:28:45.868 -07 000000610 INF: Z Motor: Moving to -0.166766 mm, started at -0.173567 mm, distance = 6.80 um
17-03-17 21:28:45.868 -07 000000610 INF: FPGA: Xmit ZDACW 36430\n [Z Motor]
17-03-17 21:28:45.868 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:28:45.878 -07 000000610 INF: FPGA: 'ZDACW 36430' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:45.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:45.878 -07 000000012 INF: FPGA: Recv ZDACR 36430
17-03-17 21:28:45.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:45.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:46.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.038 -07 000000458 INF: FPGA: Recv ZSGSRD 35246
17-03-17 21:28:46.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.048 -07 000000424 INF: FPGA: Recv ZSGSRD 35255
17-03-17 21:28:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35249
17-03-17 21:28:46.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.068 -07 000000501 INF: FPGA: Recv ZSGSRD 35248
17-03-17 21:28:46.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.078 -07 000000431 INF: FPGA: Recv ZSGSRD 35250
17-03-17 21:28:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.088 -07 000000415 INF: FPGA: Recv ZSGSRD 35248
17-03-17 21:28:46.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.098 -07 000000476 INF: FPGA: Recv ZSGSRD 35250
17-03-17 21:28:46.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.108 -07 000000480 INF: FPGA: Recv ZSGSRD 35246
17-03-17 21:28:46.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35247
17-03-17 21:28:46.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:46.128 -07 000000626 INF: FPGA: Recv ZSGSRD 35251
17-03-17 21:28:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:46.138 -07 000000608 INF: FPGA: Recv ZPIEZORD 31184
17-03-17 21:28:46.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:46.148 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.0 V.
17-03-17 21:28:46.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35249 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35246 (-165.9 uncal um), Max = 35255 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:28:46.148 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35249, posNoise = 6, negNoise = 3
17-03-17 21:28:46.148 -07 000000610 INF: Z Motor: After move to -0.166766, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:46.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:28:46.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:46.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:46.148 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:46.148 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:46.148 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:46.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:46.148 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:46.148 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:46.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:28:46.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:46.148 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:46.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:46.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:46.158 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:46.158 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:28:46.158 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:46.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:28:46.168 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:28:46.168 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:46.168 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:46.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36606 150\n [Camera]
17-03-17 21:28:46.368 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:46.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:46.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:46.798 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:46.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:46.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:46.808 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:46.808 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:46.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:46.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:46.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:28:46.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:46.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:46.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36606 817
17-03-17 21:28:47.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:47.188 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:28:47.188 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:28:47.188 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:47.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:28:47.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:28:47.188 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:47.188 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:47.188 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:28:47.188 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:28:47.198 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:28:47.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:47.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:47.348 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:47.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:47.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:47.358 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:47.368 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:47.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:28:47.368 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:47.368 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:28:47.538 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:47.548 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:47.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36606 150' command took 2 ms to send, 1370 ms to get response, and 1375 ms overall
17-03-17 21:28:47.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:47.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166770405796067. ------
17-03-17 21:28:47.548 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:47.548 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17311 mm
17-03-17 21:28:47.548 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:47.668 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:47.668 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 21:28:47.668 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:28:47.668 -07 000000626 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:28:47.668 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:47.668 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37816, sync = True, waitForSettling = False)
17-03-17 21:28:47.668 -07 000000382 INF: Z Motor: Moving to -0.173111 mm, started at -0.166770 mm, distance = -6.34 um
17-03-17 21:28:47.678 -07 000000382 INF: FPGA: Xmit ZDACW 37816\n [Z Motor]
17-03-17 21:28:47.678 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:28:47.688 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:47.688 -07 000000382 INF: FPGA: 'ZDACW 37816' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:28:47.688 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:28:47.698 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:28:47.698 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:47.698 -07 000000626 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:47.698 -07 000000626 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:47.698 -07 000000626 INF: Y Motor: Moving 1355 steps-35
17-03-17 21:28:47.698 -07 000000608 INF: FPGA: Recv ZDACR 37816
17-03-17 21:28:47.708 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:28:47.708 -07 000000382 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 21:28:47.708 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:47.758 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:28:47.758 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:28:47.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:47.768 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:28:47.768 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:28:47.768 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:47.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:47.768 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 21:28:47.768 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:47.778 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 21:28:47.868 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:47.868 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 21:28:48.078 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:28:48.078 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:28:48.108 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:48.118 -07 000000438 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:28:48.118 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:28:48.118 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:48.118 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:28:48.118 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-17 21:28:48.498 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.969015,
17-03-17 21:28:49.068 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:49.068 -07 000000576 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:28:49.078 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:49.078 -07 000000626 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:49.088 -07 000000626 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:49.088 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:49.088 -07 000000626 INF: Y Motor: Moved to 74.0073 after 1422 ms (table move)
17-03-17 21:28:49.098 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173111 mm (DAC = 37816)
17-03-17 21:28:49.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.098 -07 000000512 INF: FPGA: Recv ZSGSRD 36234
17-03-17 21:28:49.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:49.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.108 -07 000000547 INF: FPGA: Recv ZSGSRD 36236
17-03-17 21:28:49.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.118 -07 000000415 INF: FPGA: Recv ZSGSRD 36239
17-03-17 21:28:49.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.128 -07 000000382 INF: FPGA: Recv ZSGSRD 36242
17-03-17 21:28:49.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36239
17-03-17 21:28:49.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.148 -07 000000512 INF: FPGA: Recv ZSGSRD 36239
17-03-17 21:28:49.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.158 -07 000000458 INF: FPGA: Recv ZSGSRD 36238
17-03-17 21:28:49.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.168 -07 000000429 INF: FPGA: Recv ZSGSRD 36236
17-03-17 21:28:49.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.178 -07 000000475 INF: FPGA: Recv ZSGSRD 36235
17-03-17 21:28:49.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:49.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36237
17-03-17 21:28:49.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.198 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:49.198 -07 000000626 INF: FPGA: Recv ZPIEZORD 32533
17-03-17 21:28:49.208 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.208 -07 000000431 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -8.2 V.
17-03-17 21:28:49.208 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36238 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36238 (-172.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36234 (-172.2 uncal um), Max = 36242 (-172.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:28:49.208 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36238, posNoise = 4, negNoise = 4
17-03-17 21:28:49.208 -07 000000431 INF: Z Motor: After move to -0.173111, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:49.208 -07 000000431 INF: Z Motor: Settle wait time = 1425 ms, measure time = 110 ms (allowed 150 ms), total time = 1535 ms
17-03-17 21:28:49.208 -07 000000431 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:49.248 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1692 ms
17-03-17 21:28:49.248 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:49.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:49.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:49.248 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:49.248 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:49.248 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:49.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:49.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:28:49.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:49.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:28:49.258 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:49.258 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:28:49.258 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:28:49.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:49.308 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:49.508 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:49.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:49.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:49.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:28:49.548 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:49.548 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:49.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:28:49.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:28:49.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:49.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:49.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:28:49.648 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:49.648 -07 000000438 INF: Autofocus start
17-03-17 21:28:49.648 -07 000000438 INF: MeasureProfile start
17-03-17 21:28:49.648 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:49.658 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:28:49.658 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:49.658 -07 000000438 INF: MeasureProfile done
17-03-17 21:28:49.658 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:49.658 -07 000000438 INF: Autofocus finished
17-03-17 21:28:49.858 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:49.858 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:28:49.858 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173123951604269. ----------
17-03-17 21:28:49.858 -07 000000610 INF: Cycle	51	Tile	18	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:49.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36331, sync = True, waitForSettling = True)
17-03-17 21:28:49.868 -07 000000610 INF: Z Motor: Moving to -0.166313 mm, started at -0.173124 mm, distance = 6.81 um
17-03-17 21:28:49.868 -07 000000610 INF: FPGA: Xmit ZDACW 36331\n [Z Motor]
17-03-17 21:28:49.868 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:28:49.878 -07 000000610 INF: FPGA: 'ZDACW 36331' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:49.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:49.878 -07 000000512 INF: FPGA: Recv ZDACR 36331
17-03-17 21:28:49.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:49.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.038 -07 000000458 INF: FPGA: Recv ZSGSRD 35182
17-03-17 21:28:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:50.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.048 -07 000000431 INF: FPGA: Recv ZSGSRD 35178
17-03-17 21:28:50.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.058 -07 000000424 INF: FPGA: Recv ZSGSRD 35177
17-03-17 21:28:50.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.068 -07 000000626 INF: FPGA: Recv ZSGSRD 35171
17-03-17 21:28:50.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35184
17-03-17 21:28:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.088 -07 000000569 INF: FPGA: Recv ZSGSRD 35172
17-03-17 21:28:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.098 -07 000000476 INF: FPGA: Recv ZSGSRD 35180
17-03-17 21:28:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.108 -07 000000415 INF: FPGA: Recv ZSGSRD 35178
17-03-17 21:28:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.118 -07 000000382 INF: FPGA: Recv ZSGSRD 35177
17-03-17 21:28:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:50.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35182
17-03-17 21:28:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:50.138 -07 000000569 INF: FPGA: Recv ZPIEZORD 31128
17-03-17 21:28:50.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:50.148 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.544 V. Piezo Error = -8.9 V.
17-03-17 21:28:50.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35178 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35178 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35171 (-165.4 uncal um), Max = 35184 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:28:50.148 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35178, posNoise = 6, negNoise = 7
17-03-17 21:28:50.148 -07 000000610 INF: Z Motor: After move to -0.166313, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:50.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:28:50.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:50.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:50.148 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:50.148 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:50.148 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:50.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:50.148 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:50.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:50.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:50.148 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:50.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:28:50.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:50.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:50.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:50.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:50.158 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:50.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:28:50.168 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:28:50.168 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:28:50.168 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:50.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36508 150\n [Camera]
17-03-17 21:28:50.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:50.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 625
17-03-17 21:28:50.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 625
17-03-17 21:28:50.798 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:50.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:28:50.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:28:50.808 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:50.808 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:50.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:28:50.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:50.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:28:50.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36508 817
17-03-17 21:28:51.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:51.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:28:51.188 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:28:51.188 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:51.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:28:51.188 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:28:51.188 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:51.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:28:51.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:28:51.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:51.198 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:28:51.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:51.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:51.348 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:51.348 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:51.348 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:28:51.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:51.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:51.348 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:51.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:51.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:28:51.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:51.538 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:51.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36508 150' command took 2 ms to send, 1368 ms to get response, and 1374 ms overall
17-03-17 21:28:51.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:28:51.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166314286734002. ------
17-03-17 21:28:51.548 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:51.548 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17276 mm
17-03-17 21:28:51.548 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:51.548 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:51.548 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:28:51.548 -07 000000626 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 21:28:51.548 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37740, sync = True, waitForSettling = False)
17-03-17 21:28:51.548 -07 000000415 INF: Z Motor: Moving to -0.172763 mm, started at -0.166314 mm, distance = -6.45 um
17-03-17 21:28:51.558 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:51.558 -07 000000415 INF: FPGA: Xmit ZDACW 37740\n [Z Motor]
17-03-17 21:28:51.558 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:28:51.568 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:51.568 -07 000000415 INF: FPGA: 'ZDACW 37740' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:28:51.568 -07 000000576 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:28:51.578 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:28:51.578 -07 000000626 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:51.578 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:51.578 -07 000000626 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:28:51.578 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:28:51.588 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:51.588 -07 000000480 INF: FPGA: Recv ZDACR 37740
17-03-17 21:28:51.598 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:28:51.598 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:28:51.598 -07 000000415 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:28:51.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:28:51.738 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:28:51.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:51.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:51.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:28:51.748 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:28:51.748 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:51.748 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:28:51.748 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:28:51.748 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:28:51.778 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:51.778 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:28:51.878 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:51.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:51.968 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:28:51.968 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-17 21:28:51.998 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:51.998 -07 000000475 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:28:52.008 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:52.008 -07 000000626 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:52.008 -07 000000626 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:28:52.008 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-17 21:28:52.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:52.958 -07 000000576 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:28:52.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:52.968 -07 000000626 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:52.978 -07 000000626 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:28:52.978 -07 000000626 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:28:52.978 -07 000000626 INF: Y Motor: Moved to 74.8315 after 1428 ms (table move)
17-03-17 21:28:52.988 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172763 mm (DAC = 37740)
17-03-17 21:28:52.988 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:52.988 -07 000000475 INF: FPGA: Recv ZSGSRD 36189
17-03-17 21:28:52.998 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:52.998 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:52.998 -07 000000438 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:28:53.008 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.008 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.008 -07 000000382 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:28:53.018 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.018 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.018 -07 000000608 INF: FPGA: Recv ZSGSRD 36183
17-03-17 21:28:53.028 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.028 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.028 -07 000000626 INF: FPGA: Recv ZSGSRD 36182
17-03-17 21:28:53.038 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.038 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.038 -07 000000512 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:28:53.048 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.048 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.048 -07 000000438 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:28:53.058 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.058 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.058 -07 000000382 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:28:53.068 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.068 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.068 -07 000000501 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:28:53.078 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.078 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.078 -07 000000608 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:28:53.088 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.088 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:53.088 -07 000000424 INF: FPGA: Recv ZPIEZORD 32421
17-03-17 21:28:53.098 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.098 -07 000000476 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.3 V.
17-03-17 21:28:53.098 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36182 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36182 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36176 (-171.8 uncal um), Max = 36189 (-171.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:28:53.098 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36182, posNoise = 7, negNoise = 6
17-03-17 21:28:53.098 -07 000000476 INF: Z Motor: After move to -0.172763, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:53.098 -07 000000476 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:28:53.098 -07 000000476 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:28:53.148 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:28:53.148 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:28:53.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:53.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:53.148 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:53.148 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:53.148 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:28:53.148 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:53.148 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:53.148 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:28:53.158 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:53.158 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:28:53.168 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:28:53.168 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:28:53.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:28:53.218 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:28:53.418 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:28:53.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:28:53.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:28:53.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:28:53.448 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:28:53.458 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:28:53.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:28:53.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:28:53.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:53.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:28:53.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:28:53.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:53.558 -07 000000012 INF: Autofocus start
17-03-17 21:28:53.558 -07 000000012 INF: MeasureProfile start
17-03-17 21:28:53.558 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:53.568 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:28:53.568 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:28:53.568 -07 000000012 INF: MeasureProfile done
17-03-17 21:28:53.568 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:28:53.568 -07 000000012 INF: Autofocus finished
17-03-17 21:28:53.768 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:28:53.768 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:28:53.778 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.17276419572433. ----------
17-03-17 21:28:53.778 -07 000000610 INF: Cycle	51	Tile	19	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:28:53.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36255, sync = True, waitForSettling = True)
17-03-17 21:28:53.778 -07 000000610 INF: Z Motor: Moving to -0.165965 mm, started at -0.172764 mm, distance = 6.80 um
17-03-17 21:28:53.778 -07 000000610 INF: FPGA: Xmit ZDACW 36255\n [Z Motor]
17-03-17 21:28:53.778 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:28:53.788 -07 000000610 INF: FPGA: 'ZDACW 36255' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:28:53.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:53.788 -07 000000424 INF: FPGA: Recv ZDACR 36255
17-03-17 21:28:53.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:28:53.868 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.994908,
17-03-17 21:28:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.948 -07 000000547 INF: FPGA: Recv ZSGSRD 35126
17-03-17 21:28:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:28:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.958 -07 000000382 INF: FPGA: Recv ZSGSRD 35120
17-03-17 21:28:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.968 -07 000000012 INF: FPGA: Recv ZSGSRD 35127
17-03-17 21:28:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.978 -07 000000608 INF: FPGA: Recv ZSGSRD 35122
17-03-17 21:28:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.988 -07 000000438 INF: FPGA: Recv ZSGSRD 35121
17-03-17 21:28:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:53.998 -07 000000626 INF: FPGA: Recv ZSGSRD 35116
17-03-17 21:28:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:54.008 -07 000000476 INF: FPGA: Recv ZSGSRD 35133
17-03-17 21:28:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:28:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:54.018 -07 000000569 INF: FPGA: Recv ZSGSRD 35134
17-03-17 21:28:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:54.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:54.028 -07 000000429 INF: FPGA: Recv ZSGSRD 35124
17-03-17 21:28:54.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:54.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:28:54.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35123
17-03-17 21:28:54.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:54.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:28:54.048 -07 000000459 INF: FPGA: Recv ZPIEZORD 31048
17-03-17 21:28:54.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:54.058 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.0 V.
17-03-17 21:28:54.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35125 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35124 (-165.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35116 (-165.1 uncal um), Max = 35134 (-165.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:28:54.058 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35125, posNoise = 9, negNoise = 9
17-03-17 21:28:54.058 -07 000000610 INF: Z Motor: After move to -0.165965, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:28:54.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:28:54.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:28:54.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:28:54.058 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:28:54.058 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:28:54.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:28:54.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:28:54.058 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:28:54.058 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:28:54.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:28:54.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:28:54.058 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:28:54.058 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:28:54.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:28:54.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:28:54.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:28:54.068 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:28:54.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:28:54.078 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:28:54.078 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:28:54.078 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:28:54.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 36432 150\n [Camera]
17-03-17 21:28:54.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:28:54.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:28:54.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:28:54.708 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:54.708 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:54.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:28:54.708 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:28:54.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:28:54.718 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:54.718 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:54.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:28:54.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36432 817
17-03-17 21:28:55.048 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:28:55.088 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:28:55.088 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:28:55.088 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:55.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:28:55.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:28:55.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:55.088 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:55.088 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:28:55.098 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:28:55.098 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:28:55.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:28:55.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:28:55.258 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:28:55.258 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:28:55.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:28:55.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:28:55.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:28:55.268 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:28:55.268 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:28:55.268 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:28:55.448 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:28:55.448 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:28:55.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 36432 150' command took 2 ms to send, 1369 ms to get response, and 1374 ms overall
17-03-17 21:28:55.658 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:28:55.658 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:28:55.658 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:55.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:28:55.658 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:28:55.658 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:28:55.668 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:28:55.668 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:28:55.668 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:28:55.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:28:55.668 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:28:55.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 21:28:55.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:28:55.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:28:55.758 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:28:55.758 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:28:55.758 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 21:28:55.768 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:28:55.768 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:28:56.268 -07 000000476 INF: FPGA: Recv EMIN
17-03-17 21:28:56.268 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:28:56.268 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:28:56.268 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 21:28:56.278 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:28:56.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:28:56.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165973803490489. ------
17-03-17 21:28:56.278 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:28:56.278 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14045 mm
17-03-17 21:28:56.278 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:28:56.288 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:28:56.288 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 21:28:56.288 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:28:56.288 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:28:56.288 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:28:56.288 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30681, sync = True, waitForSettling = False)
17-03-17 21:28:56.288 -07 000000429 INF: Z Motor: Moving to -0.140449 mm, started at -0.165974 mm, distance = 25.53 um
17-03-17 21:28:56.298 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:28:56.298 -07 000000431 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:28:56.308 -07 000000429 INF: FPGA: Xmit ZDACW 30681\n [Z Motor]
17-03-17 21:28:56.308 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:28:56.308 -07 000000476 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:28:56.308 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:28:56.308 -07 000000476 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:28:56.308 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:28:56.318 -07 000000429 INF: FPGA: 'ZDACW 30681' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:28:56.318 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:28:56.318 -07 000000512 INF: FPGA: Recv ZDACR 30681
17-03-17 21:28:56.328 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:28:56.328 -07 000000429 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:28:56.328 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:28:56.488 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:28:56.488 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 206 ms overall
17-03-17 21:28:56.878 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:28:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:28:57.948 -07 000000458 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 21:28:57.948 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1644 ms overall
17-03-17 21:28:57.948 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:28:57.948 -07 000000476 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-17 21:28:57.948 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-17 21:28:59.238 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.99219,
17-03-17 21:29:00.798 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:00.798 -07 000000608 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:29:00.808 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.808 -07 000000476 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:00.838 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:00.838 -07 000000476 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:29:00.838 -07 000000476 INF: Y Motor: Moved to 59.9106 after 4549 ms
17-03-17 21:29:00.838 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140449 mm (DAC = 30681)
17-03-17 21:29:00.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.838 -07 000000424 INF: FPGA: Recv ZSGSRD 31159
17-03-17 21:29:00.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:29:00.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.848 -07 000000458 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:29:00.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.858 -07 000000438 INF: FPGA: Recv ZSGSRD 31151
17-03-17 21:29:00.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.868 -07 000000431 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:29:00.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.878 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.878 -07 000000382 INF: FPGA: Recv ZSGSRD 31153
17-03-17 21:29:00.888 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.888 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.888 -07 000000475 INF: FPGA: Recv ZSGSRD 31153
17-03-17 21:29:00.898 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.898 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.898 -07 000000547 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:29:00.908 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.908 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.908 -07 000000438 INF: FPGA: Recv ZSGSRD 31151
17-03-17 21:29:00.918 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.918 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.918 -07 000000424 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:29:00.928 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.928 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:00.928 -07 000000382 INF: FPGA: Recv ZSGSRD 31159
17-03-17 21:29:00.938 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.938 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:00.938 -07 000000429 INF: FPGA: Recv ZPIEZORD 26841
17-03-17 21:29:00.948 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:00.948 -07 000000626 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.682 V. Piezo Error = -9.5 V.
17-03-17 21:29:00.948 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31155 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31156 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31151 (-139.6 uncal um), Max = 31159 (-139.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:00.948 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31155, posNoise = 4, negNoise = 4
17-03-17 21:29:00.948 -07 000000626 INF: Z Motor: After move to -0.140449, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:00.948 -07 000000626 INF: Z Motor: Settle wait time = 4552 ms, measure time = 106 ms (allowed 150 ms), total time = 4658 ms
17-03-17 21:29:00.948 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:00.998 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4711 ms
17-03-17 21:29:00.998 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:00.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:00.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:00.998 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:00.998 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:00.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:00.998 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:00.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:00.998 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:29:01.028 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:29:01.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:01.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:29:01.028 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:01.038 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:29:01.038 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 21:29:01.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:01.088 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:01.288 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:01.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:01.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:01.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:01.328 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:01.328 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:01.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:29:01.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:29:01.418 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:01.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:01.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:29:01.528 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:01.528 -07 000000576 INF: Image SNR check: start
17-03-17 21:29:01.528 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:01.538 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:01.538 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:01.538 -07 000000576 INF: Image SNR check: pass  [peak (Max-Min)=60.00]
17-03-17 21:29:01.538 -07 000000576 INF: Autofocus start
17-03-17 21:29:01.538 -07 000000576 INF: MeasureProfile start
17-03-17 21:29:01.558 -07 000000576 INF: MeasureProfile done
17-03-17 21:29:01.558 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:01.558 -07 000000576 INF: Autofocus finished
17-03-17 21:29:01.738 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:01.738 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:01.738 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140469681287698. ----------
17-03-17 21:29:01.748 -07 000000610 INF: Cycle	51	Tile	1	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:01.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29188, sync = True, waitForSettling = True)
17-03-17 21:29:01.748 -07 000000610 INF: Z Motor: Moving to -0.133614 mm, started at -0.140470 mm, distance = 6.86 um
17-03-17 21:29:01.748 -07 000000610 INF: FPGA: Xmit ZDACW 29188\n [Z Motor]
17-03-17 21:29:01.748 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:29:01.758 -07 000000610 INF: FPGA: 'ZDACW 29188' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:01.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:01.758 -07 000000626 INF: FPGA: Recv ZDACR 29188
17-03-17 21:29:01.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:01.878 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:01.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.918 -07 000000458 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:29:01.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.928 -07 000000626 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:29:01.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30090
17-03-17 21:29:01.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.948 -07 000000415 INF: FPGA: Recv ZSGSRD 30084
17-03-17 21:29:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.958 -07 000000012 INF: FPGA: Recv ZSGSRD 30086
17-03-17 21:29:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:29:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.978 -07 000000476 INF: FPGA: Recv ZSGSRD 30088
17-03-17 21:29:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.988 -07 000000569 INF: FPGA: Recv ZSGSRD 30083
17-03-17 21:29:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:01.998 -07 000000415 INF: FPGA: Recv ZSGSRD 30088
17-03-17 21:29:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:02.008 -07 000000459 INF: FPGA: Recv ZSGSRD 30088
17-03-17 21:29:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:02.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:02.018 -07 000000458 INF: FPGA: Recv ZPIEZORD 25724
17-03-17 21:29:02.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:02.028 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.454 V. Piezo Error = -9.6 V.
17-03-17 21:29:02.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30087 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30088 (-132.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30083 (-132.8 uncal um), Max = 30090 (-132.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:02.028 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30087, posNoise = 3, negNoise = 4
17-03-17 21:29:02.028 -07 000000610 INF: Z Motor: After move to -0.133614, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:02.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:29:02.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:02.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:02.028 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:02.028 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:02.028 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:02.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:02.028 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:02.028 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:02.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:02.028 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:02.028 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:29:02.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:02.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:02.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:02.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:29:02.038 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:29:02.048 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:29:02.048 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:02.058 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:29:02.058 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:02.058 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:29:02.058 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 21:29:02.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29365 150\n [Camera]
17-03-17 21:29:02.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:02.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:02.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:02.698 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:02.698 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:02.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:02.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:02.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:02.698 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:02.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:02.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:29:02.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29365 817
17-03-17 21:29:03.038 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:03.068 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:29:03.078 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:29:03.078 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:03.078 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:03.078 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:29:03.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:29:03.078 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:29:03.078 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:03.088 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:03.098 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:29:03.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:03.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:03.248 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:03.248 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:03.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:03.248 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:03.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:03.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:29:03.258 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:03.258 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:29:03.438 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:29:03.438 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:03.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29365 150' command took 2 ms to send, 1365 ms to get response, and 1374 ms overall
17-03-17 21:29:03.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:03.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133608622720297. ------
17-03-17 21:29:03.558 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14006 mm
17-03-17 21:29:03.558 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:03.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:03.568 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:03.568 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:03.568 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:29:03.568 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:29:03.568 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:03.568 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30595, sync = True, waitForSettling = False)
17-03-17 21:29:03.568 -07 000000626 INF: Z Motor: Moving to -0.140055 mm, started at -0.133609 mm, distance = -6.45 um
17-03-17 21:29:03.568 -07 000000438 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:29:03.578 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:03.578 -07 000000576 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:03.578 -07 000000626 INF: FPGA: Xmit ZDACW 30595\n [Z Motor]
17-03-17 21:29:03.578 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:03.578 -07 000000576 INF: Y Motor: Moving 1331 steps2
17-03-17 21:29:03.578 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:29:03.588 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:03.588 -07 000000626 INF: FPGA: 'ZDACW 30595' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:29:03.598 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:03.608 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:03.608 -07 000000012 INF: FPGA: Recv ZDACR 30595
17-03-17 21:29:03.618 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:03.618 -07 000000626 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:29:03.638 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:29:03.638 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:29:03.638 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:03.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:29:03.648 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:29:03.648 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:03.648 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:03.648 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:29:03.648 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:29:03.658 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:29:03.788 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:03.788 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:29:03.968 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:29:03.968 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:29:03.998 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:04.008 -07 000000627 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:29:04.008 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:04.008 -07 000000576 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:04.008 -07 000000576 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:29:04.008 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 21:29:04.608 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.012614,
17-03-17 21:29:04.958 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:04.958 -07 000000626 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:29:04.968 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:04.968 -07 000000576 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:04.988 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:04.988 -07 000000576 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:04.988 -07 000000576 INF: Y Motor: Moved to 60.7324 after 1423 ms (table move)
17-03-17 21:29:04.988 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140055 mm (DAC = 30595)
17-03-17 21:29:04.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:04.998 -07 000000382 INF: FPGA: Recv ZSGSRD 31096
17-03-17 21:29:04.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:29:04.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:04.998 -07 000000476 INF: FPGA: Recv ZSGSRD 31096
17-03-17 21:29:05.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:05.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.008 -07 000000626 INF: FPGA: Recv ZSGSRD 31087
17-03-17 21:29:05.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:05.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.018 -07 000000458 INF: FPGA: Recv ZSGSRD 31095
17-03-17 21:29:05.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.028 -07 000000501 INF: FPGA: Recv ZSGSRD 31096
17-03-17 21:29:05.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.038 -07 000000415 INF: FPGA: Recv ZSGSRD 31093
17-03-17 21:29:05.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.048 -07 000000547 INF: FPGA: Recv ZSGSRD 31086
17-03-17 21:29:05.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.058 -07 000000476 INF: FPGA: Recv ZSGSRD 31090
17-03-17 21:29:05.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.068 -07 000000429 INF: FPGA: Recv ZSGSRD 31090
17-03-17 21:29:05.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.078 -07 000000512 INF: FPGA: Recv ZSGSRD 31093
17-03-17 21:29:05.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.088 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:05.088 -07 000000608 INF: FPGA: Recv ZPIEZORD 27062
17-03-17 21:29:05.098 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.098 -07 000000569 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -8.9 V.
17-03-17 21:29:05.098 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31092 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31093 (-139.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31086 (-139.2 uncal um), Max = 31096 (-139.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:29:05.098 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31092, posNoise = 4, negNoise = 6
17-03-17 21:29:05.098 -07 000000569 INF: Z Motor: After move to -0.140055, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:05.098 -07 000000569 INF: Z Motor: Settle wait time = 1425 ms, measure time = 102 ms (allowed 150 ms), total time = 1527 ms
17-03-17 21:29:05.098 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:05.148 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:29:05.148 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:05.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:05.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:05.148 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:05.148 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:05.148 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:05.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:05.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:05.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:05.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:05.158 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:05.168 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:29:05.168 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:29:05.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:05.218 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:05.418 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:05.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:05.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:05.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:05.458 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:05.458 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:05.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:29:05.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:29:05.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:05.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:05.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:29:05.558 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:05.558 -07 000000431 INF: Autofocus start
17-03-17 21:29:05.558 -07 000000431 INF: MeasureProfile start
17-03-17 21:29:05.558 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:05.568 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:05.568 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:05.568 -07 000000431 INF: MeasureProfile done
17-03-17 21:29:05.568 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:29:05.568 -07 000000431 INF: Autofocus finished
17-03-17 21:29:05.768 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:05.768 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:05.768 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.140064955922767. ----------
17-03-17 21:29:05.768 -07 000000610 INF: Cycle	51	Tile	2	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:05.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29120, sync = True, waitForSettling = True)
17-03-17 21:29:05.778 -07 000000610 INF: Z Motor: Moving to -0.133303 mm, started at -0.140065 mm, distance = 6.76 um
17-03-17 21:29:05.778 -07 000000610 INF: FPGA: Xmit ZDACW 29120\n [Z Motor]
17-03-17 21:29:05.778 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:29:05.788 -07 000000610 INF: FPGA: 'ZDACW 29120' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:05.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:05.788 -07 000000626 INF: FPGA: Recv ZDACR 29120
17-03-17 21:29:05.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:05.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.948 -07 000000512 INF: FPGA: Recv ZSGSRD 30042
17-03-17 21:29:05.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:29:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.968 -07 000000382 INF: FPGA: Recv ZSGSRD 30043
17-03-17 21:29:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.978 -07 000000576 INF: FPGA: Recv ZSGSRD 30045
17-03-17 21:29:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.988 -07 000000480 INF: FPGA: Recv ZSGSRD 30042
17-03-17 21:29:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:05.998 -07 000000415 INF: FPGA: Recv ZSGSRD 30042
17-03-17 21:29:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:06.008 -07 000000569 INF: FPGA: Recv ZSGSRD 30044
17-03-17 21:29:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:06.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:06.018 -07 000000459 INF: FPGA: Recv ZSGSRD 30038
17-03-17 21:29:06.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:06.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:06.028 -07 000000475 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:29:06.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:06.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:06.038 -07 000000626 INF: FPGA: Recv ZSGSRD 30040
17-03-17 21:29:06.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:06.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:06.048 -07 000000512 INF: FPGA: Recv ZPIEZORD 25692
17-03-17 21:29:06.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:06.058 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.5 V.
17-03-17 21:29:06.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30041 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30042 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30038 (-132.5 uncal um), Max = 30045 (-132.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:29:06.058 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30041, posNoise = 4, negNoise = 3
17-03-17 21:29:06.058 -07 000000610 INF: Z Motor: After move to -0.133303, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:06.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:29:06.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:06.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:06.058 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:06.058 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:06.058 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:06.058 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:06.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:06.058 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:06.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:06.058 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:06.058 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 21:29:06.058 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:06.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:06.068 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:06.068 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:06.068 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:06.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:29:06.078 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:29:06.078 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:29:06.078 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:29:06.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29296 150\n [Camera]
17-03-17 21:29:06.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:06.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:06.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:06.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:06.718 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:06.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:06.718 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:06.718 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:06.718 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 21:29:06.718 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:06.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:06.878 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:06.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29296 817
17-03-17 21:29:07.058 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:07.118 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:29:07.118 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:29:07.118 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:07.118 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:07.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:29:07.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:29:07.118 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:29:07.118 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:07.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:07.128 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:29:07.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:07.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:07.268 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:07.268 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:07.268 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:29:07.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:07.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:07.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:07.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:07.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:29:07.458 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:29:07.458 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:07.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29296 150' command took 2 ms to send, 1362 ms to get response, and 1375 ms overall
17-03-17 21:29:07.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:07.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.133313108961776. ------
17-03-17 21:29:07.458 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:07.458 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13971 mm
17-03-17 21:29:07.458 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:07.468 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:29:07.468 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:29:07.468 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:07.468 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:07.468 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:07.468 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30519, sync = True, waitForSettling = False)
17-03-17 21:29:07.468 -07 000000429 INF: Z Motor: Moving to -0.139707 mm, started at -0.133313 mm, distance = -6.39 um
17-03-17 21:29:07.468 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:29:07.478 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:07.478 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:07.478 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:07.478 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:07.478 -07 000000576 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:29:07.488 -07 000000429 INF: FPGA: Xmit ZDACW 30519\n [Z Motor]
17-03-17 21:29:07.488 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:29:07.498 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:07.498 -07 000000429 INF: FPGA: 'ZDACW 30519' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:29:07.508 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:07.508 -07 000000627 INF: FPGA: Recv ZDACR 30519
17-03-17 21:29:07.518 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:07.518 -07 000000429 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:29:07.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:29:07.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:29:07.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:07.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:29:07.668 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:29:07.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:07.678 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:07.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:07.678 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:29:07.678 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:07.678 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 21:29:07.678 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:29:07.868 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:29:07.868 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:29:07.908 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:07.908 -07 000000382 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:29:07.918 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:07.918 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:07.918 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:29:07.918 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 21:29:08.868 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:08.868 -07 000000458 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:29:08.878 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:08.878 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:08.898 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:08.898 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:08.898 -07 000000576 INF: Y Motor: Moved to 61.5635 after 1433 ms (table move)
17-03-17 21:29:08.898 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139707 mm (DAC = 30519)
17-03-17 21:29:08.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.908 -07 000000569 INF: FPGA: Recv ZSGSRD 31035
17-03-17 21:29:08.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:29:08.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.908 -07 000000480 INF: FPGA: Recv ZSGSRD 31031
17-03-17 21:29:08.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.918 -07 000000475 INF: FPGA: Recv ZSGSRD 31041
17-03-17 21:29:08.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.928 -07 000000501 INF: FPGA: Recv ZSGSRD 31044
17-03-17 21:29:08.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.938 -07 000000424 INF: FPGA: Recv ZSGSRD 31043
17-03-17 21:29:08.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.948 -07 000000512 INF: FPGA: Recv ZSGSRD 31033
17-03-17 21:29:08.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.958 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.958 -07 000000012 INF: FPGA: Recv ZSGSRD 31036
17-03-17 21:29:08.968 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.968 -07 000000438 INF: FPGA: Recv ZSGSRD 31038
17-03-17 21:29:08.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.978 -07 000000569 INF: FPGA: Recv ZSGSRD 31026
17-03-17 21:29:08.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.988 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:08.988 -07 000000476 INF: FPGA: Recv ZSGSRD 31040
17-03-17 21:29:08.998 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:08.998 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:08.998 -07 000000475 INF: FPGA: Recv ZPIEZORD 27016
17-03-17 21:29:09.008 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.008 -07 000000547 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -8.9 V.
17-03-17 21:29:09.008 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31037 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31037 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31026 (-138.8 uncal um), Max = 31044 (-139.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:29:09.008 -07 000000547 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31037, posNoise = 7, negNoise = 11
17-03-17 21:29:09.008 -07 000000547 INF: Z Motor: After move to -0.139707, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:09.008 -07 000000547 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:29:09.008 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:09.058 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:29:09.058 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:09.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:09.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:09.058 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:09.058 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:09.058 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:09.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:09.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:09.058 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:09.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:09.068 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:09.078 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:29:09.078 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:29:09.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:09.128 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:09.328 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:09.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:09.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:09.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:29:09.368 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:09.368 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:09.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:29:09.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 21:29:09.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:09.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:09.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:29:09.468 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:09.468 -07 000000458 INF: Autofocus start
17-03-17 21:29:09.468 -07 000000458 INF: MeasureProfile start
17-03-17 21:29:09.468 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:09.478 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:09.478 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:09.488 -07 000000458 INF: MeasureProfile done
17-03-17 21:29:09.488 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:29:09.488 -07 000000458 INF: Autofocus finished
17-03-17 21:29:09.678 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:09.678 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:09.678 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.13971162425497. ----------
17-03-17 21:29:09.678 -07 000000610 INF: Cycle	51	Tile	3	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:09.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29043, sync = True, waitForSettling = True)
17-03-17 21:29:09.688 -07 000000610 INF: Z Motor: Moving to -0.132950 mm, started at -0.139712 mm, distance = 6.76 um
17-03-17 21:29:09.688 -07 000000610 INF: FPGA: Xmit ZDACW 29043\n [Z Motor]
17-03-17 21:29:09.688 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:29:09.698 -07 000000610 INF: FPGA: 'ZDACW 29043' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:09.698 -07 000000438 INF: FPGA: Recv ZDACR 29043
17-03-17 21:29:09.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.858 -07 000000475 INF: FPGA: Recv ZSGSRD 29986
17-03-17 21:29:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.868 -07 000000415 INF: FPGA: Recv ZSGSRD 29983
17-03-17 21:29:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.878 -07 000000431 INF: FPGA: Recv ZSGSRD 29982
17-03-17 21:29:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.888 -07 000000627 INF: FPGA: Recv ZSGSRD 29987
17-03-17 21:29:09.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.898 -07 000000480 INF: FPGA: Recv ZSGSRD 29987
17-03-17 21:29:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.908 -07 000000576 INF: FPGA: Recv ZSGSRD 29984
17-03-17 21:29:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29993
17-03-17 21:29:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.928 -07 000000512 INF: FPGA: Recv ZSGSRD 29983
17-03-17 21:29:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.938 -07 000000569 INF: FPGA: Recv ZSGSRD 29986
17-03-17 21:29:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:09.948 -07 000000429 INF: FPGA: Recv ZSGSRD 29981
17-03-17 21:29:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:09.958 -07 000000475 INF: FPGA: Recv ZPIEZORD 25657
17-03-17 21:29:09.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:09.968 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.5 V.
17-03-17 21:29:09.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29985 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29985 (-132.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29981 (-132.1 uncal um), Max = 29993 (-132.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:09.968 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29985, posNoise = 8, negNoise = 4
17-03-17 21:29:09.968 -07 000000610 INF: Z Motor: After move to -0.132950, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:09.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:29:09.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:09.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:09.968 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:09.968 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:09.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:09.968 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:09.968 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:09.968 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:09.968 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:09.968 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:09.968 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:09.968 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:09.978 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:29:09.978 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:09.978 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.02213,
17-03-17 21:29:09.978 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 7 ms.
17-03-17 21:29:09.978 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:09.988 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:29:09.988 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:09.988 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:29:09.988 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:29:09.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29220 150\n [Camera]
17-03-17 21:29:10.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:10.628 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:10.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:10.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:10.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:10.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:29:10.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:10.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:10.628 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:10.628 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:10.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:29:10.818 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29220 817
17-03-17 21:29:10.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:10.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:29:10.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:29:10.998 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:11.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:29:11.008 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:29:11.008 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:11.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:11.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:29:11.008 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:11.018 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:29:11.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:11.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:11.178 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:11.178 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:11.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:29:11.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:11.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:11.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:11.178 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:11.178 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:29:11.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:29:11.368 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:11.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29220 150' command took 2 ms to send, 1364 ms to get response, and 1377 ms overall
17-03-17 21:29:11.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:11.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132953353081837. ------
17-03-17 21:29:11.378 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:11.378 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13942 mm
17-03-17 21:29:11.378 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:11.378 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:29:11.378 -07 000000431 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:29:11.378 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30457, sync = True, waitForSettling = False)
17-03-17 21:29:11.488 -07 000000512 INF: Z Motor: Moving to -0.139423 mm, started at -0.132953 mm, distance = -6.47 um
17-03-17 21:29:11.488 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:11.488 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 21:29:11.498 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:11.498 -07 000000458 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:29:11.508 -07 000000431 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 125 ms overall
17-03-17 21:29:11.508 -07 000000431 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:11.508 -07 000000431 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:11.508 -07 000000431 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:29:11.508 -07 000000512 INF: FPGA: Xmit ZDACW 30457\n [Z Motor]
17-03-17 21:29:11.508 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:29:11.518 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:11.518 -07 000000512 INF: FPGA: 'ZDACW 30457' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:29:11.528 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:11.538 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:11.538 -07 000000382 INF: FPGA: Recv ZDACR 30457
17-03-17 21:29:11.548 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:11.548 -07 000000512 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-17 21:29:11.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:29:11.568 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:29:11.568 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:11.568 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:29:11.568 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:29:11.568 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:11.578 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:11.578 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:11.578 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:29:11.578 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:29:11.718 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:11.718 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:29:11.878 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:11.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:11.898 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:29:11.898 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 21:29:11.938 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:11.948 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:29:11.948 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:11.948 -07 000000431 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:11.948 -07 000000431 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:29:11.948 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-17 21:29:12.898 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:12.898 -07 000000012 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:29:12.908 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:12.908 -07 000000431 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:12.928 -07 000000431 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:12.928 -07 000000431 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:12.928 -07 000000431 INF: Y Motor: Moved to 62.3950 after 1549 ms (table move)
17-03-17 21:29:12.928 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139423 mm (DAC = 30457)
17-03-17 21:29:12.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.938 -07 000000501 INF: FPGA: Recv ZSGSRD 30995
17-03-17 21:29:12.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:29:12.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.938 -07 000000576 INF: FPGA: Recv ZSGSRD 30993
17-03-17 21:29:12.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:12.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.948 -07 000000475 INF: FPGA: Recv ZSGSRD 31000
17-03-17 21:29:12.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:12.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.958 -07 000000608 INF: FPGA: Recv ZSGSRD 30997
17-03-17 21:29:12.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:12.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30993
17-03-17 21:29:12.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:12.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.978 -07 000000382 INF: FPGA: Recv ZSGSRD 30992
17-03-17 21:29:12.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:12.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30985
17-03-17 21:29:12.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:12.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:12.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30990
17-03-17 21:29:13.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:13.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:13.008 -07 000000429 INF: FPGA: Recv ZSGSRD 30991
17-03-17 21:29:13.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:13.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:13.018 -07 000000547 INF: FPGA: Recv ZSGSRD 30995
17-03-17 21:29:13.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:13.028 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:13.028 -07 000000438 INF: FPGA: Recv ZPIEZORD 26981
17-03-17 21:29:13.038 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:13.038 -07 000000627 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -8.8 V.
17-03-17 21:29:13.038 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30993 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30993 (-138.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30985 (-138.6 uncal um), Max = 31000 (-138.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:29:13.038 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30993, posNoise = 7, negNoise = 8
17-03-17 21:29:13.038 -07 000000627 INF: Z Motor: After move to -0.139423, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:13.038 -07 000000627 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:29:13.038 -07 000000627 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:13.088 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1708 ms
17-03-17 21:29:13.088 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:13.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:13.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:13.088 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:13.088 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:13.088 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:13.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:13.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:13.088 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:13.088 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:13.098 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:13.108 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:29:13.108 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:29:13.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:13.148 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:13.348 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:13.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:13.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:13.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:13.388 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:13.388 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:13.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:29:13.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:29:13.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:13.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:13.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:29:13.588 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:13.588 -07 000000501 INF: Autofocus start
17-03-17 21:29:13.588 -07 000000501 INF: MeasureProfile start
17-03-17 21:29:13.588 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:13.598 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:13.598 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:13.598 -07 000000501 INF: MeasureProfile done
17-03-17 21:29:13.598 -07 000000501 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:29:13.598 -07 000000501 INF: Autofocus finished
17-03-17 21:29:13.798 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:13.798 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:29:13.798 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.139428958920732. ----------
17-03-17 21:29:13.798 -07 000000610 INF: Cycle	51	Tile	4	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:13.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28935, sync = True, waitForSettling = True)
17-03-17 21:29:13.808 -07 000000610 INF: Z Motor: Moving to -0.132456 mm, started at -0.139429 mm, distance = 6.97 um
17-03-17 21:29:13.808 -07 000000610 INF: FPGA: Xmit ZDACW 28935\n [Z Motor]
17-03-17 21:29:13.808 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:29:13.818 -07 000000610 INF: FPGA: 'ZDACW 28935' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:13.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:13.818 -07 000000382 INF: FPGA: Recv ZDACR 28935
17-03-17 21:29:13.828 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:13.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:13.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:13.978 -07 000000569 INF: FPGA: Recv ZSGSRD 29907
17-03-17 21:29:13.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:13.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:13.988 -07 000000547 INF: FPGA: Recv ZSGSRD 29911
17-03-17 21:29:13.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:13.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:13.998 -07 000000576 INF: FPGA: Recv ZSGSRD 29904
17-03-17 21:29:14.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:29:14.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.018 -07 000000475 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:29:14.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.028 -07 000000429 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:29:14.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:29:14.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.048 -07 000000438 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:29:14.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.058 -07 000000458 INF: FPGA: Recv ZSGSRD 29904
17-03-17 21:29:14.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:14.068 -07 000000382 INF: FPGA: Recv ZSGSRD 29913
17-03-17 21:29:14.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:14.078 -07 000000512 INF: FPGA: Recv ZPIEZORD 25630
17-03-17 21:29:14.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:14.088 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.4 V.
17-03-17 21:29:14.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29908 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29908 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29904 (-131.6 uncal um), Max = 29914 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:14.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29908, posNoise = 6, negNoise = 4
17-03-17 21:29:14.088 -07 000000610 INF: Z Motor: After move to -0.132456, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:14.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:29:14.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:14.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:14.088 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:14.088 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:14.088 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:14.088 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:14.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:14.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:14.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:14.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:14.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:29:14.088 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:14.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:29:14.098 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:14.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:29:14.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:14.098 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:29:14.098 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:29:14.108 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:29:14.108 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:14.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29112 150\n [Camera]
17-03-17 21:29:14.308 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:14.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:14.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:14.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:14.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:14.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:14.738 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:14.748 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:14.748 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:14.748 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:14.748 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:29:14.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29112 817
17-03-17 21:29:15.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:15.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:29:15.118 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:29:15.118 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:15.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:29:15.118 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:29:15.118 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:15.128 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:15.128 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:29:15.128 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:15.128 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:29:15.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:15.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:15.288 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:15.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:15.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:15.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:15.298 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:15.298 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:29:15.308 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:15.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:29:15.358 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.018051,
17-03-17 21:29:15.478 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:29:15.478 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:15.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29112 150' command took 2 ms to send, 1367 ms to get response, and 1374 ms overall
17-03-17 21:29:15.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:15.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.132458688746922. ------
17-03-17 21:29:15.488 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:15.488 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13921 mm
17-03-17 21:29:15.488 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:15.488 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:29:15.488 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:29:15.488 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30411, sync = True, waitForSettling = False)
17-03-17 21:29:15.488 -07 000000382 INF: Z Motor: Moving to -0.139213 mm, started at -0.132459 mm, distance = -6.75 um
17-03-17 21:29:15.488 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:15.608 -07 000000382 INF: FPGA: Xmit ZDACW 30411\n [Z Motor]
17-03-17 21:29:15.608 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 21:29:15.608 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:29:15.618 -07 000000382 INF: FPGA: 'ZDACW 30411' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 21:29:15.618 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:15.618 -07 000000480 INF: FPGA: Recv ZDACR 30411
17-03-17 21:29:15.628 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:15.628 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:15.628 -07 000000382 INF: Z Motor: MoveAbsStepped took 134 ms (did NOT wait for settling yet))
17-03-17 21:29:15.628 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:29:15.638 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:15.638 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 144 ms overall
17-03-17 21:29:15.638 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:15.638 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:15.638 -07 000000501 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:29:15.648 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:15.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:29:15.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:29:15.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:15.688 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:29:15.688 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:29:15.688 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:15.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:15.688 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:15.688 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:29:15.698 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:29:15.838 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:15.838 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 228 ms overall
17-03-17 21:29:16.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:29:16.018 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 387 ms overall
17-03-17 21:29:16.058 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:16.058 -07 000000627 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:29:16.068 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:16.068 -07 000000501 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:16.068 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:29:16.068 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 21:29:16.878 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:16.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:17.018 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:17.018 -07 000000480 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:29:17.028 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:17.028 -07 000000501 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:17.048 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:17.048 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:17.048 -07 000000501 INF: Y Motor: Moved to 63.2236 after 1558 ms (table move)
17-03-17 21:29:17.048 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139213 mm (DAC = 30411)
17-03-17 21:29:17.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30963
17-03-17 21:29:17.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:29:17.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.058 -07 000000431 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:29:17.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.068 -07 000000626 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:29:17.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.078 -07 000000438 INF: FPGA: Recv ZSGSRD 30967
17-03-17 21:29:17.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.088 -07 000000627 INF: FPGA: Recv ZSGSRD 30963
17-03-17 21:29:17.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.098 -07 000000424 INF: FPGA: Recv ZSGSRD 30963
17-03-17 21:29:17.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.108 -07 000000627 INF: FPGA: Recv ZSGSRD 30961
17-03-17 21:29:17.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.118 -07 000000415 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:29:17.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.128 -07 000000476 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:29:17.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:17.138 -07 000000547 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:29:17.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.148 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:17.148 -07 000000382 INF: FPGA: Recv ZPIEZORD 26959
17-03-17 21:29:17.158 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.158 -07 000000429 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 21:29:17.158 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30960 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30960 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30957 (-138.4 uncal um), Max = 30967 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:29:17.158 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30960, posNoise = 7, negNoise = 3
17-03-17 21:29:17.158 -07 000000429 INF: Z Motor: After move to -0.139213, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:17.158 -07 000000429 INF: Z Motor: Settle wait time = 1561 ms, measure time = 103 ms (allowed 150 ms), total time = 1664 ms
17-03-17 21:29:17.158 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:17.208 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 21:29:17.208 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:17.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:17.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:17.208 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:17.208 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:17.208 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:17.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:17.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:17.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:17.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:17.218 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:17.228 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:29:17.228 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:29:17.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:17.278 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:17.478 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:17.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:17.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:17.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:17.518 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:17.518 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:17.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:29:17.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:29:17.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:17.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:17.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:29:17.618 -07 000000429 INF: Autofocus start
17-03-17 21:29:17.618 -07 000000429 INF: MeasureProfile start
17-03-17 21:29:17.618 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:17.618 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:17.628 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:17.628 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:17.628 -07 000000429 INF: MeasureProfile done
17-03-17 21:29:17.628 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:29:17.628 -07 000000429 INF: Autofocus finished
17-03-17 21:29:17.828 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:17.828 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:17.828 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.139216959920054. ----------
17-03-17 21:29:17.838 -07 000000610 INF: Cycle	51	Tile	5	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:17.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28936, sync = True, waitForSettling = True)
17-03-17 21:29:17.838 -07 000000610 INF: Z Motor: Moving to -0.132461 mm, started at -0.139217 mm, distance = 6.76 um
17-03-17 21:29:17.838 -07 000000610 INF: FPGA: Xmit ZDACW 28936\n [Z Motor]
17-03-17 21:29:17.838 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:29:17.848 -07 000000610 INF: FPGA: 'ZDACW 28936' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:17.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:17.848 -07 000000382 INF: FPGA: Recv ZDACR 28936
17-03-17 21:29:17.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:17.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:18.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.008 -07 000000627 INF: FPGA: Recv ZSGSRD 29915
17-03-17 21:29:18.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:18.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:29:18.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29907
17-03-17 21:29:18.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.038 -07 000000424 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:29:18.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:29:18.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.058 -07 000000608 INF: FPGA: Recv ZSGSRD 29913
17-03-17 21:29:18.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.068 -07 000000475 INF: FPGA: Recv ZSGSRD 29903
17-03-17 21:29:18.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.078 -07 000000438 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:29:18.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.088 -07 000000415 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:29:18.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:18.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:29:18.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:18.108 -07 000000501 INF: FPGA: Recv ZPIEZORD 25616
17-03-17 21:29:18.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:18.118 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.4 V.
17-03-17 21:29:18.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29910 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29910 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29903 (-131.6 uncal um), Max = 29915 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:29:18.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29910, posNoise = 5, negNoise = 7
17-03-17 21:29:18.118 -07 000000610 INF: Z Motor: After move to -0.132461, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:18.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:29:18.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:18.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:18.118 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:18.118 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:18.118 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:18.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:18.118 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:18.118 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:18.118 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:29:18.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:18.118 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:18.118 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:18.128 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:18.128 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:18.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:18.128 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:18.138 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:29:18.138 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:18.138 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:29:18.138 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:29:18.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29112 150\n [Camera]
17-03-17 21:29:18.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:18.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:18.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:18.768 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:18.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:18.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:18.778 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:18.778 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:18.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:18.778 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:18.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:29:18.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29112 817
17-03-17 21:29:19.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:19.148 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:29:19.148 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 21:29:19.148 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:19.148 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:29:19.148 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:29:19.148 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:19.158 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:19.158 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:19.158 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:29:19.158 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:29:19.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:19.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:19.318 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:19.318 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:19.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:29:19.318 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:19.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:19.328 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:19.328 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:19.328 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:29:19.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:19.508 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:19.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29112 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-17 21:29:19.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:19.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.132471537171205. ------
17-03-17 21:29:19.518 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:19.518 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13892 mm
17-03-17 21:29:19.518 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:19.518 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:19.518 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30348, sync = True, waitForSettling = False)
17-03-17 21:29:19.518 -07 000000627 INF: Z Motor: Moving to -0.138924 mm, started at -0.132472 mm, distance = -6.45 um
17-03-17 21:29:19.518 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:29:19.518 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:29:19.528 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:29:19.528 -07 000000627 INF: FPGA: Xmit ZDACW 30348\n [Z Motor]
17-03-17 21:29:19.528 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:29:19.538 -07 000000627 INF: FPGA: 'ZDACW 30348' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:29:19.538 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:19.538 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:29:19.548 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:19.548 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:29:19.548 -07 000000512 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:19.548 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:19.548 -07 000000512 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:29:19.558 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:19.558 -07 000000547 INF: FPGA: Recv ZDACR 30348
17-03-17 21:29:19.568 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:19.568 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:19.568 -07 000000627 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:29:19.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:29:19.718 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:29:19.718 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:19.728 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:29:19.728 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:29:19.728 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:19.728 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:19.728 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:29:19.728 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:19.738 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:29:19.748 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:19.748 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:29:19.938 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:29:19.938 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:29:19.978 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:19.988 -07 000000458 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:29:19.988 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:19.988 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:19.988 -07 000000512 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:29:19.988 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.135 mm/sec
17-03-17 21:29:20.718 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.011254,
17-03-17 21:29:20.938 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:20.938 -07 000000382 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:29:20.948 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:20.948 -07 000000512 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:20.968 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:20.968 -07 000000512 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:29:20.968 -07 000000512 INF: Y Motor: Moved to 64.0566 after 1444 ms (table move)
17-03-17 21:29:20.968 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138924 mm (DAC = 30348)
17-03-17 21:29:20.968 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:20.968 -07 000000547 INF: FPGA: Recv ZSGSRD 30911
17-03-17 21:29:20.978 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:20.978 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:20.978 -07 000000382 INF: FPGA: Recv ZSGSRD 30916
17-03-17 21:29:20.988 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:20.988 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:20.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30914
17-03-17 21:29:20.998 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:20.998 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:20.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30917
17-03-17 21:29:21.008 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.008 -07 000000512 INF: FPGA: Recv ZSGSRD 30920
17-03-17 21:29:21.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.018 -07 000000458 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:29:21.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.048 -07 000000627 INF: FPGA: Recv ZSGSRD 30912
17-03-17 21:29:21.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:21.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.058 -07 000000569 INF: FPGA: Recv ZSGSRD 30918
17-03-17 21:29:21.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.088 -07 000000608 INF: FPGA: Recv ZSGSRD 30918
17-03-17 21:29:21.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:21.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30916
17-03-17 21:29:21.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.118 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:21.118 -07 000000458 INF: FPGA: Recv ZPIEZORD 26952
17-03-17 21:29:21.128 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:21.128 -07 000000012 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -8.7 V.
17-03-17 21:29:21.128 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30916 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30916 (-138.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30911 (-138.1 uncal um), Max = 30920 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:29:21.128 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30916, posNoise = 4, negNoise = 5
17-03-17 21:29:21.128 -07 000000012 INF: Z Motor: After move to -0.138924, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:21.128 -07 000000012 INF: Z Motor: Settle wait time = 1447 ms, measure time = 154 ms (allowed 150 ms), total time = 1601 ms
17-03-17 21:29:21.128 -07 000000012 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-17 21:29:21.128 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:29:21.128 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:21.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:21.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:21.128 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:21.128 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:21.128 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:21.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:21.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:21.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:21.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:21.138 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:21.148 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:29:21.148 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:29:21.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:21.198 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:21.398 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:21.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:21.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:21.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:29:21.428 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:21.438 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:21.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:29:21.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:29:21.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:21.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:29:21.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:29:21.538 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:21.538 -07 000000438 INF: Autofocus start
17-03-17 21:29:21.538 -07 000000438 INF: MeasureProfile start
17-03-17 21:29:21.538 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:21.548 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:29:21.548 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:21.548 -07 000000438 INF: MeasureProfile done
17-03-17 21:29:21.558 -07 000000438 INF: X=-17  Z correction [um]=-0.0861559
17-03-17 21:29:21.558 -07 000000438 INF: Autofocus finished
17-03-17 21:29:21.748 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:21.748 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:21.748 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138934294585817. ----------
17-03-17 21:29:21.748 -07 000000610 INF: Cycle	51	Tile	6	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:21.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28842, sync = True, waitForSettling = True)
17-03-17 21:29:21.758 -07 000000610 INF: Z Motor: Moving to -0.132030 mm, started at -0.138934 mm, distance = 6.90 um
17-03-17 21:29:21.758 -07 000000610 INF: FPGA: Xmit ZDACW 28842\n [Z Motor]
17-03-17 21:29:21.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:29:21.768 -07 000000610 INF: FPGA: 'ZDACW 28842' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:21.768 -07 000000424 INF: FPGA: Recv ZDACR 28842
17-03-17 21:29:21.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:21.878 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:21.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29845
17-03-17 21:29:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:29:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29840
17-03-17 21:29:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.958 -07 000000501 INF: FPGA: Recv ZSGSRD 29841
17-03-17 21:29:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.968 -07 000000476 INF: FPGA: Recv ZSGSRD 29840
17-03-17 21:29:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.978 -07 000000438 INF: FPGA: Recv ZSGSRD 29842
17-03-17 21:29:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29842
17-03-17 21:29:21.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:21.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:21.998 -07 000000512 INF: FPGA: Recv ZSGSRD 29842
17-03-17 21:29:22.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:22.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:22.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29843
17-03-17 21:29:22.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:22.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:22.018 -07 000000424 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:29:22.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:22.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:22.028 -07 000000627 INF: FPGA: Recv ZPIEZORD 25558
17-03-17 21:29:22.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:22.038 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.4 V.
17-03-17 21:29:22.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29841 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29842 (-131.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29838 (-131.2 uncal um), Max = 29845 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:29:22.038 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29841, posNoise = 4, negNoise = 3
17-03-17 21:29:22.038 -07 000000610 INF: Z Motor: After move to -0.132030, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:22.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:29:22.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:22.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:22.038 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:22.038 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:22.038 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:22.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:22.038 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:22.038 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:22.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:29:22.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:22.038 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:29:22.038 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:22.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:22.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:22.048 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:22.048 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:22.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:29:22.048 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:29:22.058 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:29:22.058 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:22.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 29018 150\n [Camera]
17-03-17 21:29:22.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:22.688 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:22.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:22.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:22.688 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:22.688 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:29:22.688 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:22.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:22.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:22.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:22.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:29:22.878 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29018 817
17-03-17 21:29:23.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:23.068 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:29:23.068 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:29:23.068 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:23.068 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:29:23.068 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:29:23.068 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:23.078 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:29:23.078 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:29:23.078 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:29:23.088 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:29:23.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:23.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:23.238 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:23.238 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:23.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:29:23.238 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:23.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:23.248 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:23.248 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:23.248 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:29:23.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:23.428 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:23.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 29018 150' command took 2 ms to send, 1368 ms to get response, and 1374 ms overall
17-03-17 21:29:23.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:23.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.132028266533424. ------
17-03-17 21:29:23.438 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:23.438 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13858 mm
17-03-17 21:29:23.438 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:23.438 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:29:23.438 -07 000000627 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:29:23.438 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:23.438 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30274, sync = True, waitForSettling = False)
17-03-17 21:29:23.438 -07 000000576 INF: Z Motor: Moving to -0.138585 mm, started at -0.132028 mm, distance = -6.56 um
17-03-17 21:29:23.448 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:29:23.448 -07 000000576 INF: FPGA: Xmit ZDACW 30274\n [Z Motor]
17-03-17 21:29:23.448 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:29:23.458 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:23.458 -07 000000576 INF: FPGA: 'ZDACW 30274' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:29:23.458 -07 000000547 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:29:23.468 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:23.468 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:29:23.468 -07 000000627 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:23.588 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:23.588 -07 000000627 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:23.588 -07 000000627 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:29:23.588 -07 000000459 INF: FPGA: Recv ZDACR 30274
17-03-17 21:29:23.598 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 21:29:23.598 -07 000000576 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 21:29:23.598 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:23.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:29:23.648 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:29:23.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:23.648 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:29:23.648 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:29:23.648 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:23.648 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:23.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:23.648 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:29:23.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:29:23.668 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:23.668 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 76 ms to get response, and 222 ms overall
17-03-17 21:29:23.978 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:29:23.978 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 383 ms overall
17-03-17 21:29:24.008 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:24.018 -07 000000608 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:29:24.028 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:24.028 -07 000000627 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:24.028 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:29:24.028 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.836 mm, average velocity = 2.183 mm/sec
17-03-17 21:29:24.978 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:24.978 -07 000000547 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:29:24.988 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:24.988 -07 000000627 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:25.008 -07 000000627 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:25.008 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:25.008 -07 000000627 INF: Y Motor: Moved to 64.8784 after 1567 ms (table move)
17-03-17 21:29:25.008 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138585 mm (DAC = 30274)
17-03-17 21:29:25.008 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.018 -07 000000424 INF: FPGA: Recv ZSGSRD 30863
17-03-17 21:29:25.018 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:29:25.018 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.018 -07 000000569 INF: FPGA: Recv ZSGSRD 30863
17-03-17 21:29:25.028 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:25.028 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.028 -07 000000438 INF: FPGA: Recv ZSGSRD 30856
17-03-17 21:29:25.038 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.038 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.038 -07 000000480 INF: FPGA: Recv ZSGSRD 30860
17-03-17 21:29:25.048 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.048 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30858
17-03-17 21:29:25.058 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.058 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.058 -07 000000012 INF: FPGA: Recv ZSGSRD 30862
17-03-17 21:29:25.068 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.068 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30866
17-03-17 21:29:25.078 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.078 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.078 -07 000000438 INF: FPGA: Recv ZSGSRD 30869
17-03-17 21:29:25.088 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.088 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.088 -07 000000415 INF: FPGA: Recv ZSGSRD 30872
17-03-17 21:29:25.098 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.098 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.098 -07 000000547 INF: FPGA: Recv ZSGSRD 30859
17-03-17 21:29:25.108 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.108 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:25.108 -07 000000512 INF: FPGA: Recv ZPIEZORD 26881
17-03-17 21:29:25.118 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:25.118 -07 000000458 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -8.8 V.
17-03-17 21:29:25.118 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30863 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30856 (-137.7 uncal um), Max = 30872 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:29:25.118 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30863, posNoise = 9, negNoise = 7
17-03-17 21:29:25.118 -07 000000458 INF: Z Motor: After move to -0.138585, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:25.118 -07 000000458 INF: Z Motor: Settle wait time = 1569 ms, measure time = 103 ms (allowed 150 ms), total time = 1672 ms
17-03-17 21:29:25.118 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:25.168 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 21:29:25.168 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:25.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:25.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:25.168 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:25.168 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:25.168 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:25.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:25.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:25.168 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:25.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:25.178 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:25.188 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:29:25.188 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:29:25.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:25.238 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:25.438 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:25.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:25.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:25.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:25.478 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:25.478 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:25.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:29:25.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:29:25.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:25.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:25.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:29:25.578 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:25.578 -07 000000475 INF: Autofocus start
17-03-17 21:29:25.578 -07 000000475 INF: MeasureProfile start
17-03-17 21:29:25.578 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:25.588 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:25.588 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:25.588 -07 000000475 INF: MeasureProfile done
17-03-17 21:29:25.588 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:25.588 -07 000000475 INF: Autofocus finished
17-03-17 21:29:25.788 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:25.788 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 21:29:25.798 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.138593811342303. ----------
17-03-17 21:29:25.798 -07 000000610 INF: Cycle	51	Tile	7	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:25.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28781, sync = True, waitForSettling = True)
17-03-17 21:29:25.798 -07 000000610 INF: Z Motor: Moving to -0.131751 mm, started at -0.138594 mm, distance = 6.84 um
17-03-17 21:29:25.798 -07 000000610 INF: FPGA: Xmit ZDACW 28781\n [Z Motor]
17-03-17 21:29:25.808 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:29:25.808 -07 000000610 INF: FPGA: 'ZDACW 28781' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:29:25.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:25.808 -07 000000382 INF: FPGA: Recv ZDACR 28781
17-03-17 21:29:25.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:25.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.968 -07 000000627 INF: FPGA: Recv ZSGSRD 29802
17-03-17 21:29:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29799
17-03-17 21:29:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.988 -07 000000012 INF: FPGA: Recv ZSGSRD 29792
17-03-17 21:29:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:25.998 -07 000000459 INF: FPGA: Recv ZSGSRD 29797
17-03-17 21:29:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:26.008 -07 000000626 INF: FPGA: Recv ZSGSRD 29799
17-03-17 21:29:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:26.018 -07 000000547 INF: FPGA: Recv ZSGSRD 29807
17-03-17 21:29:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:26.028 -07 000000459 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:29:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:26.038 -07 000000415 INF: FPGA: Recv ZSGSRD 29796
17-03-17 21:29:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:26.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29797
17-03-17 21:29:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:26.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29797
17-03-17 21:29:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:26.068 -07 000000512 INF: FPGA: Recv ZPIEZORD 25485
17-03-17 21:29:26.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:26.078 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.5 V.
17-03-17 21:29:26.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29797 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29792 (-130.9 uncal um), Max = 29807 (-131.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:29:26.078 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 9, negNoise = 6
17-03-17 21:29:26.078 -07 000000610 INF: Z Motor: After move to -0.131751, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:26.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 21:29:26.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:26.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:26.078 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:26.078 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:26.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:26.078 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:26.078 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:26.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:26.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:26.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:26.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:29:26.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:26.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:26.078 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:26.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:26.078 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:26.088 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.027603,
17-03-17 21:29:26.088 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:29:26.088 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:29:26.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:29:26.088 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:29:26.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28958 150\n [Camera]
17-03-17 21:29:26.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:26.738 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:26.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:26.738 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:26.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:26.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:26.738 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:26.738 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:26.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:26.748 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:26.748 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:29:26.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:26.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:26.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28958 817
17-03-17 21:29:27.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:27.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:29:27.118 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:29:27.118 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:27.118 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:29:27.118 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:29:27.118 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:27.118 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:27.118 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:29:27.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:27.128 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:29:27.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:27.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:27.288 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:27.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:27.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:27.288 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:27.288 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:27.288 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:29:27.298 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:27.298 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:29:27.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:27.478 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:27.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28958 150' command took 2 ms to send, 1365 ms to get response, and 1383 ms overall
17-03-17 21:29:27.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:27.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131752025411328. ------
17-03-17 21:29:27.478 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:27.488 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13831 mm
17-03-17 21:29:27.488 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:27.488 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:27.488 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:29:27.488 -07 000000476 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:29:27.488 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30215, sync = True, waitForSettling = False)
17-03-17 21:29:27.488 -07 000000627 INF: Z Motor: Moving to -0.138315 mm, started at -0.131752 mm, distance = -6.56 um
17-03-17 21:29:27.608 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:27.608 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 21:29:27.608 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:29:27.618 -07 000000627 INF: FPGA: Xmit ZDACW 30215\n [Z Motor]
17-03-17 21:29:27.618 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 21:29:27.618 -07 000000476 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:27.618 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:29:27.618 -07 000000476 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:27.618 -07 000000476 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:29:27.628 -07 000000627 INF: FPGA: 'ZDACW 30215' command took 0 ms to send, 0 ms to get response, and 136 ms overall
17-03-17 21:29:27.628 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:27.638 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:27.648 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:27.648 -07 000000459 INF: FPGA: Recv ZDACR 30215
17-03-17 21:29:27.658 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:27.658 -07 000000627 INF: Z Motor: MoveAbsStepped took 166 ms (did NOT wait for settling yet))
17-03-17 21:29:27.688 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:29:27.688 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:29:27.688 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:27.688 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:29:27.688 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:29:27.688 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:27.688 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:27.688 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:27.688 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:29:27.698 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:29:27.828 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:27.828 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:29:28.008 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:29:28.008 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:29:28.048 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:28.048 -07 000000459 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:29:28.058 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:28.058 -07 000000476 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:28.058 -07 000000476 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:29:28.058 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 21:29:29.008 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:29.008 -07 000000415 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:29:29.018 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:29.018 -07 000000476 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:29.038 -07 000000476 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:29.038 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:29:29.038 -07 000000476 INF: Y Motor: Moved to 65.7139 after 1554 ms (table move)
17-03-17 21:29:29.048 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138315 mm (DAC = 30215)
17-03-17 21:29:29.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.048 -07 000000608 INF: FPGA: Recv ZSGSRD 30821
17-03-17 21:29:29.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:29.058 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.058 -07 000000627 INF: FPGA: Recv ZSGSRD 30818
17-03-17 21:29:29.068 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.068 -07 000000459 INF: FPGA: Recv ZSGSRD 30827
17-03-17 21:29:29.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.078 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.078 -07 000000415 INF: FPGA: Recv ZSGSRD 30827
17-03-17 21:29:29.088 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.088 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.088 -07 000000431 INF: FPGA: Recv ZSGSRD 30822
17-03-17 21:29:29.098 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:29.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.098 -07 000000382 INF: FPGA: Recv ZSGSRD 30824
17-03-17 21:29:29.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.108 -07 000000576 INF: FPGA: Recv ZSGSRD 30819
17-03-17 21:29:29.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.118 -07 000000012 INF: FPGA: Recv ZSGSRD 30817
17-03-17 21:29:29.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.128 -07 000000476 INF: FPGA: Recv ZSGSRD 30819
17-03-17 21:29:29.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30824
17-03-17 21:29:29.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.148 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:29.148 -07 000000438 INF: FPGA: Recv ZPIEZORD 26850
17-03-17 21:29:29.158 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.158 -07 000000569 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -8.7 V.
17-03-17 21:29:29.158 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30822 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30817 (-137.5 uncal um), Max = 30827 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:29:29.158 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30822, posNoise = 5, negNoise = 5
17-03-17 21:29:29.158 -07 000000569 INF: Z Motor: After move to -0.138315, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:29.158 -07 000000569 INF: Z Motor: Settle wait time = 1558 ms, measure time = 109 ms (allowed 150 ms), total time = 1667 ms
17-03-17 21:29:29.158 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:29.208 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 21:29:29.208 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:29.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:29.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:29.208 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:29.208 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:29.208 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:29.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:29.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:29.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:29.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:29.218 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:29.228 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:29:29.228 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:29:29.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:29.268 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:29.468 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:29.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:29.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:29.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:29.508 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:29.508 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:29.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:29:29.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:29:29.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:29.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:29.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:29:29.608 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:29.608 -07 000000576 INF: Autofocus start
17-03-17 21:29:29.608 -07 000000576 INF: MeasureProfile start
17-03-17 21:29:29.608 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:29.618 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:29.618 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:29.618 -07 000000576 INF: MeasureProfile done
17-03-17 21:29:29.618 -07 000000576 INF: X=43  Z correction [um]=0.1828984
17-03-17 21:29:29.618 -07 000000576 INF: Autofocus finished
17-03-17 21:29:29.818 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:29.818 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:29.818 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.138330418644491. ----------
17-03-17 21:29:29.818 -07 000000610 INF: Cycle	51	Tile	8	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:29.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28767, sync = True, waitForSettling = True)
17-03-17 21:29:29.828 -07 000000610 INF: Z Motor: Moving to -0.131687 mm, started at -0.138330 mm, distance = 6.64 um
17-03-17 21:29:29.828 -07 000000610 INF: FPGA: Xmit ZDACW 28767\n [Z Motor]
17-03-17 21:29:29.828 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:29:29.838 -07 000000610 INF: FPGA: 'ZDACW 28767' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:29.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:29.838 -07 000000547 INF: FPGA: Recv ZDACR 28767
17-03-17 21:29:29.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:29.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:29.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:29.998 -07 000000431 INF: FPGA: Recv ZSGSRD 29786
17-03-17 21:29:30.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:30.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.008 -07 000000576 INF: FPGA: Recv ZSGSRD 29787
17-03-17 21:29:30.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.018 -07 000000476 INF: FPGA: Recv ZSGSRD 29787
17-03-17 21:29:30.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.028 -07 000000415 INF: FPGA: Recv ZSGSRD 29784
17-03-17 21:29:30.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.038 -07 000000438 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:29:30.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.048 -07 000000475 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:29:30.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.058 -07 000000480 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:29:30.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.068 -07 000000458 INF: FPGA: Recv ZSGSRD 29784
17-03-17 21:29:30.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.078 -07 000000626 INF: FPGA: Recv ZSGSRD 29788
17-03-17 21:29:30.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:30.088 -07 000000608 INF: FPGA: Recv ZSGSRD 29787
17-03-17 21:29:30.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:30.098 -07 000000569 INF: FPGA: Recv ZPIEZORD 25529
17-03-17 21:29:30.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:30.108 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.4 V.
17-03-17 21:29:30.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29787 (-130.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29784 (-130.9 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:29:30.108 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 4, negNoise = 3
17-03-17 21:29:30.108 -07 000000610 INF: Z Motor: After move to -0.131687, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:30.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:29:30.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:30.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:30.108 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:30.108 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:30.108 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:30.108 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:30.108 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:30.108 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:30.108 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:29:30.108 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:30.108 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:29:30.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:30.118 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:30.118 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:30.118 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:29:30.118 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:30.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:29:30.128 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:29:30.128 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:29:30.128 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:29:30.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28944 150\n [Camera]
17-03-17 21:29:30.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:30.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:30.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:30.758 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:30.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:30.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:30.768 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:30.768 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:30.768 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:30.768 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:30.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 21:29:30.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28944 817
17-03-17 21:29:31.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:31.138 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:29:31.138 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:29:31.138 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:31.148 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:29:31.148 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:29:31.148 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:31.148 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:31.148 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:29:31.148 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:31.158 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:29:31.308 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1176
17-03-17 21:29:31.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1176
17-03-17 21:29:31.308 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:31.308 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:31.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:29:31.318 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1176
17-03-17 21:29:31.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1176
17-03-17 21:29:31.318 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:31.318 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:31.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:29:31.468 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.003063,
17-03-17 21:29:31.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:31.498 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:31.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28944 150' command took 2 ms to send, 1369 ms to get response, and 1375 ms overall
17-03-17 21:29:31.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:31.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.131681359077769. ------
17-03-17 21:29:31.508 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13804 mm
17-03-17 21:29:31.508 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:31.518 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:29:31.518 -07 000000458 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 21:29:31.518 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:31.518 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30154, sync = True, waitForSettling = False)
17-03-17 21:29:31.518 -07 000000480 INF: Z Motor: Moving to -0.138036 mm, started at -0.131681 mm, distance = -6.35 um
17-03-17 21:29:31.518 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:31.528 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:29:31.528 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:31.528 -07 000000512 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:29:31.538 -07 000000480 INF: FPGA: Xmit ZDACW 30154\n [Z Motor]
17-03-17 21:29:31.538 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:31.538 -07 000000458 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:31.538 -07 000000458 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:31.538 -07 000000458 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:29:31.538 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:29:31.548 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:31.548 -07 000000480 INF: FPGA: 'ZDACW 30154' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:29:31.558 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:31.568 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:31.568 -07 000000627 INF: FPGA: Recv ZDACR 30154
17-03-17 21:29:31.578 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:31.578 -07 000000480 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-17 21:29:31.708 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:29:31.708 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:29:31.708 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:31.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:29:31.708 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:29:31.708 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:31.708 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:31.708 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:31.708 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:29:31.718 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:29:31.748 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:31.748 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:29:31.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:31.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:31.928 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:29:31.928 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:29:31.968 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:31.968 -07 000000459 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:29:31.978 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:31.978 -07 000000458 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:31.978 -07 000000458 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:29:31.978 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:29:32.928 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:32.928 -07 000000576 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:29:32.938 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:32.938 -07 000000458 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:32.958 -07 000000458 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:32.958 -07 000000458 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:32.958 -07 000000458 INF: Y Motor: Moved to 66.5386 after 1444 ms (table move)
17-03-17 21:29:32.958 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138036 mm (DAC = 30154)
17-03-17 21:29:32.958 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:32.968 -07 000000424 INF: FPGA: Recv ZSGSRD 30790
17-03-17 21:29:32.968 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:29:32.968 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:32.968 -07 000000431 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:29:32.978 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:32.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:32.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30775
17-03-17 21:29:32.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:32.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:32.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30782
17-03-17 21:29:32.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:32.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:32.998 -07 000000547 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:29:33.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.008 -07 000000438 INF: FPGA: Recv ZSGSRD 30772
17-03-17 21:29:33.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.018 -07 000000475 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:29:33.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.028 -07 000000569 INF: FPGA: Recv ZSGSRD 30773
17-03-17 21:29:33.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.038 -07 000000012 INF: FPGA: Recv ZSGSRD 30772
17-03-17 21:29:33.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.048 -07 000000431 INF: FPGA: Recv ZSGSRD 30773
17-03-17 21:29:33.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.058 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:33.058 -07 000000458 INF: FPGA: Recv ZPIEZORD 26811
17-03-17 21:29:33.068 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.068 -07 000000626 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.7 V.
17-03-17 21:29:33.068 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30776 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30774 (-137.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30769 (-137.2 uncal um), Max = 30790 (-137.3 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:29:33.068 -07 000000626 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30776, posNoise = 14, negNoise = 7
17-03-17 21:29:33.068 -07 000000626 INF: Z Motor: After move to -0.138036, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:33.068 -07 000000626 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:29:33.068 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:33.118 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:29:33.118 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:33.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:33.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:33.118 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:33.118 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:33.118 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:33.118 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:33.118 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:33.118 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:33.128 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:33.128 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:33.138 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:29:33.138 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:29:33.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:33.188 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:33.388 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:33.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:33.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:33.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:29:33.428 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:33.428 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:33.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:29:33.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:29:33.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:33.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:29:33.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:29:33.528 -07 000000431 INF: Autofocus start
17-03-17 21:29:33.528 -07 000000431 INF: MeasureProfile start
17-03-17 21:29:33.528 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:33.528 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:33.538 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:33.538 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:33.538 -07 000000431 INF: MeasureProfile done
17-03-17 21:29:33.538 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:29:33.538 -07 000000431 INF: Autofocus finished
17-03-17 21:29:33.738 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:33.738 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:33.748 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.13803490488597. ----------
17-03-17 21:29:33.748 -07 000000610 INF: Cycle	51	Tile	9	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:33.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28678, sync = True, waitForSettling = True)
17-03-17 21:29:33.748 -07 000000610 INF: Z Motor: Moving to -0.131279 mm, started at -0.138035 mm, distance = 6.76 um
17-03-17 21:29:33.748 -07 000000610 INF: FPGA: Xmit ZDACW 28678\n [Z Motor]
17-03-17 21:29:33.748 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:29:33.758 -07 000000610 INF: FPGA: 'ZDACW 28678' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:33.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:33.758 -07 000000012 INF: FPGA: Recv ZDACR 28678
17-03-17 21:29:33.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:33.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:29:33.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:33.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29728
17-03-17 21:29:33.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.938 -07 000000459 INF: FPGA: Recv ZSGSRD 29721
17-03-17 21:29:33.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.948 -07 000000576 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:29:33.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.958 -07 000000012 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:29:33.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29722
17-03-17 21:29:33.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29724
17-03-17 21:29:33.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29724
17-03-17 21:29:33.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:33.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:33.998 -07 000000576 INF: FPGA: Recv ZSGSRD 29725
17-03-17 21:29:34.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:34.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:34.008 -07 000000431 INF: FPGA: Recv ZSGSRD 29721
17-03-17 21:29:34.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:34.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:34.018 -07 000000475 INF: FPGA: Recv ZPIEZORD 25453
17-03-17 21:29:34.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:34.028 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.4 V.
17-03-17 21:29:34.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29723 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29723 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29719 (-130.5 uncal um), Max = 29728 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:34.028 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29723, posNoise = 5, negNoise = 4
17-03-17 21:29:34.028 -07 000000610 INF: Z Motor: After move to -0.131279, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:34.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:29:34.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:34.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:34.028 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:34.028 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:34.028 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:34.028 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:34.028 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:34.028 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:34.028 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:29:34.028 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:34.028 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:34.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:34.038 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:34.038 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:34.038 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:34.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:34.048 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:29:34.048 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:29:34.048 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:29:34.048 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:34.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28855 150\n [Camera]
17-03-17 21:29:34.248 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:34.678 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:34.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:34.678 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:34.678 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:34.678 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:29:34.678 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:34.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:34.688 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:34.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:34.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:29:34.868 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28855 817
17-03-17 21:29:35.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:35.058 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:29:35.058 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:29:35.058 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:35.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:29:35.058 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:29:35.058 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:35.058 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:35.068 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:35.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:29:35.068 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:29:35.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:35.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:35.228 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:35.228 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:35.228 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:29:35.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:35.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:35.238 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:35.238 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:35.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:29:35.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:29:35.418 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:35.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28855 150' command took 2 ms to send, 1369 ms to get response, and 1374 ms overall
17-03-17 21:29:35.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:35.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.131270209500696. ------
17-03-17 21:29:35.548 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:35.548 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13807 mm
17-03-17 21:29:35.548 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:35.558 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:35.558 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:35.558 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:35.558 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:29:35.558 -07 000000382 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:29:35.558 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30162, sync = True, waitForSettling = False)
17-03-17 21:29:35.558 -07 000000415 INF: Z Motor: Moving to -0.138073 mm, started at -0.131270 mm, distance = -6.80 um
17-03-17 21:29:35.568 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:35.568 -07 000000547 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:29:35.578 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:29:35.578 -07 000000382 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:35.578 -07 000000415 INF: FPGA: Xmit ZDACW 30162\n [Z Motor]
17-03-17 21:29:35.578 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:29:35.578 -07 000000382 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:35.578 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:29:35.588 -07 000000415 INF: FPGA: 'ZDACW 30162' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:29:35.588 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:35.598 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:35.598 -07 000000608 INF: FPGA: Recv ZDACR 30162
17-03-17 21:29:35.608 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:35.608 -07 000000415 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:29:35.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:29:35.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:29:35.628 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:35.628 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:29:35.628 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:29:35.628 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:35.628 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:29:35.638 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:35.638 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:29:35.638 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:29:35.758 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:35.758 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:29:35.958 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:29:35.958 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 21:29:35.998 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:35.998 -07 000000547 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:29:36.008 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:36.008 -07 000000382 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:36.008 -07 000000382 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:29:36.008 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.210 mm/sec
17-03-17 21:29:36.838 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.990831,
17-03-17 21:29:36.878 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:36.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:36.958 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:36.958 -07 000000569 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:29:36.968 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:36.968 -07 000000382 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:36.988 -07 000000382 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:36.988 -07 000000382 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:36.988 -07 000000382 INF: Y Motor: Moved to 67.3716 after 1432 ms (table move)
17-03-17 21:29:36.988 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138073 mm (DAC = 30162)
17-03-17 21:29:36.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:36.998 -07 000000459 INF: FPGA: Recv ZSGSRD 30791
17-03-17 21:29:36.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:29:36.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:36.998 -07 000000512 INF: FPGA: Recv ZSGSRD 30779
17-03-17 21:29:37.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.008 -07 000000547 INF: FPGA: Recv ZSGSRD 30782
17-03-17 21:29:37.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.018 -07 000000431 INF: FPGA: Recv ZSGSRD 30786
17-03-17 21:29:37.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30784
17-03-17 21:29:37.038 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.038 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.038 -07 000000424 INF: FPGA: Recv ZSGSRD 30779
17-03-17 21:29:37.048 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.048 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.048 -07 000000512 INF: FPGA: Recv ZSGSRD 30786
17-03-17 21:29:37.058 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.058 -07 000000547 INF: FPGA: Recv ZSGSRD 30778
17-03-17 21:29:37.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30784
17-03-17 21:29:37.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30784
17-03-17 21:29:37.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.088 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:37.088 -07 000000458 INF: FPGA: Recv ZPIEZORD 26845
17-03-17 21:29:37.098 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.098 -07 000000438 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -8.7 V.
17-03-17 21:29:37.098 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30783 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30784 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30778 (-137.2 uncal um), Max = 30791 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:29:37.098 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30783, posNoise = 8, negNoise = 5
17-03-17 21:29:37.098 -07 000000438 INF: Z Motor: After move to -0.138073, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:37.098 -07 000000438 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:29:37.098 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:37.148 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:29:37.148 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:37.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:37.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:37.148 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:37.148 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:37.148 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:37.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:37.158 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:37.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:37.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:37.158 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:37.168 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:29:37.168 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:29:37.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:37.228 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:37.428 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:37.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:37.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:37.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:37.468 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:37.468 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:37.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 296 ms overall
17-03-17 21:29:37.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:29:37.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:37.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:37.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:29:37.568 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:37.568 -07 000000512 INF: Autofocus start
17-03-17 21:29:37.568 -07 000000512 INF: MeasureProfile start
17-03-17 21:29:37.568 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:37.578 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:37.578 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:37.578 -07 000000512 INF: MeasureProfile done
17-03-17 21:29:37.578 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:37.578 -07 000000512 INF: Autofocus finished
17-03-17 21:29:37.778 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:37.778 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:29:37.788 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.138079874370963. ----------
17-03-17 21:29:37.788 -07 000000610 INF: Cycle	51	Tile	10	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:37.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28670, sync = True, waitForSettling = True)
17-03-17 21:29:37.788 -07 000000610 INF: Z Motor: Moving to -0.131243 mm, started at -0.138080 mm, distance = 6.84 um
17-03-17 21:29:37.788 -07 000000610 INF: FPGA: Xmit ZDACW 28670\n [Z Motor]
17-03-17 21:29:37.788 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:29:37.798 -07 000000610 INF: FPGA: 'ZDACW 28670' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:37.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:37.798 -07 000000424 INF: FPGA: Recv ZDACR 28670
17-03-17 21:29:37.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:29:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.968 -07 000000438 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:29:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.978 -07 000000627 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:29:37.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:29:37.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:37.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:37.998 -07 000000480 INF: FPGA: Recv ZSGSRD 29721
17-03-17 21:29:38.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:38.008 -07 000000424 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:29:38.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:38.018 -07 000000475 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:29:38.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:38.028 -07 000000626 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:29:38.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:38.038 -07 000000458 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:29:38.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:38.048 -07 000000576 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:29:38.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:38.058 -07 000000608 INF: FPGA: Recv ZPIEZORD 25438
17-03-17 21:29:38.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:38.068 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -9.4 V.
17-03-17 21:29:38.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29720 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29716 (-130.4 uncal um), Max = 29726 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:29:38.068 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 7, negNoise = 3
17-03-17 21:29:38.068 -07 000000610 INF: Z Motor: After move to -0.131243, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:38.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:29:38.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:38.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:38.068 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:38.068 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:38.068 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:38.068 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:38.068 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:38.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:38.068 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:38.068 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:38.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:38.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:38.078 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:38.078 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:38.078 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:38.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:38.088 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:29:38.088 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:29:38.088 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:29:38.088 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:38.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28846 150\n [Camera]
17-03-17 21:29:38.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:38.718 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:38.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:38.718 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:38.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:38.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:38.718 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:38.728 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:38.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:38.728 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:38.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:29:38.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28846 818
17-03-17 21:29:39.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:39.098 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:29:39.098 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:29:39.098 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:39.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:29:39.108 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:29:39.108 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:39.108 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:29:39.108 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:29:39.108 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:29:39.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:29:39.268 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:39.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:39.268 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:39.268 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:39.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:39.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:39.278 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:39.278 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:29:39.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:39.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:29:39.458 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:29:39.458 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:39.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28846 150' command took 2 ms to send, 1368 ms to get response, and 1376 ms overall
17-03-17 21:29:39.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:39.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.131244512652129. ------
17-03-17 21:29:39.478 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:39.478 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13773 mm
17-03-17 21:29:39.478 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:39.478 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:39.488 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:39.488 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:39.488 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:29:39.488 -07 000000608 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:29:39.488 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30087, sync = True, waitForSettling = False)
17-03-17 21:29:39.488 -07 000000438 INF: Z Motor: Moving to -0.137729 mm, started at -0.131245 mm, distance = -6.48 um
17-03-17 21:29:39.498 -07 000000438 INF: FPGA: Xmit ZDACW 30087\n [Z Motor]
17-03-17 21:29:39.498 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:29:39.508 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:39.508 -07 000000438 INF: FPGA: 'ZDACW 30087' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:29:39.508 -07 000000012 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:29:39.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:29:39.518 -07 000000608 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:39.518 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:39.518 -07 000000547 INF: FPGA: Recv ZDACR 30087
17-03-17 21:29:39.518 -07 000000608 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:39.518 -07 000000608 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:29:39.528 -07 000000438 INF: FPGA: 'ZDACR' command took 4 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:29:39.528 -07 000000438 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:29:39.528 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:39.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:29:39.658 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:29:39.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:39.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:39.668 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:29:39.688 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:39.688 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:39.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:29:39.788 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:29:39.788 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:39.788 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:39.798 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 21:29:39.898 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:29:39.898 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 381 ms overall
17-03-17 21:29:39.938 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:39.948 -07 000000012 INF: FPGA: Recv YRDPOS 139682
17-03-17 21:29:39.948 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:39.948 -07 000000608 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:39.948 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:29:39.948 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.841 mm, average velocity = 2.207 mm/sec
17-03-17 21:29:40.898 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:40.898 -07 000000382 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:29:40.908 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:40.908 -07 000000608 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:40.928 -07 000000608 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:40.928 -07 000000608 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:29:40.928 -07 000000608 INF: Y Motor: Moved to 68.2046 after 1442 ms (table move)
17-03-17 21:29:40.928 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137729 mm (DAC = 30087)
17-03-17 21:29:40.928 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.928 -07 000000459 INF: FPGA: Recv ZSGSRD 30736
17-03-17 21:29:40.938 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:40.938 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.938 -07 000000547 INF: FPGA: Recv ZSGSRD 30730
17-03-17 21:29:40.948 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:40.948 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.948 -07 000000438 INF: FPGA: Recv ZSGSRD 30729
17-03-17 21:29:40.958 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:40.958 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.958 -07 000000476 INF: FPGA: Recv ZSGSRD 30737
17-03-17 21:29:40.968 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:40.968 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.968 -07 000000415 INF: FPGA: Recv ZSGSRD 30731
17-03-17 21:29:40.978 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:40.978 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.978 -07 000000475 INF: FPGA: Recv ZSGSRD 30734
17-03-17 21:29:40.988 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:40.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.988 -07 000000512 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:29:40.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:40.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:40.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30722
17-03-17 21:29:41.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.008 -07 000000476 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:29:41.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.018 -07 000000626 INF: FPGA: Recv ZSGSRD 30728
17-03-17 21:29:41.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.028 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:41.028 -07 000000576 INF: FPGA: Recv ZPIEZORD 26774
17-03-17 21:29:41.038 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.038 -07 000000569 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -8.7 V.
17-03-17 21:29:41.038 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30729 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30730 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30722 (-136.9 uncal um), Max = 30737 (-137.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:29:41.038 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30729, posNoise = 8, negNoise = 7
17-03-17 21:29:41.038 -07 000000569 INF: Z Motor: After move to -0.137729, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:41.038 -07 000000569 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:29:41.038 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:41.088 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:29:41.088 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:41.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:41.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:41.088 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:41.088 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:41.088 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:41.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:41.088 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:41.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:41.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:41.088 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:41.108 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:29:41.108 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:29:41.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:41.158 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:41.358 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:41.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:41.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:41.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:41.388 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:41.398 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:41.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:29:41.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 21:29:41.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:41.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:29:41.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 21:29:41.498 -07 000000415 INF: Autofocus start
17-03-17 21:29:41.498 -07 000000415 INF: MeasureProfile start
17-03-17 21:29:41.498 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:41.508 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:41.508 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:41.508 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:41.518 -07 000000415 INF: MeasureProfile done
17-03-17 21:29:41.518 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:41.518 -07 000000415 INF: Autofocus finished
17-03-17 21:29:41.708 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:41.708 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 21:29:41.718 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.137732966915307. ----------
17-03-17 21:29:41.718 -07 000000610 INF: Cycle	51	Tile	11	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:41.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28595, sync = True, waitForSettling = True)
17-03-17 21:29:41.718 -07 000000610 INF: Z Motor: Moving to -0.130900 mm, started at -0.137733 mm, distance = 6.83 um
17-03-17 21:29:41.718 -07 000000610 INF: FPGA: Xmit ZDACW 28595\n [Z Motor]
17-03-17 21:29:41.718 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:29:41.728 -07 000000610 INF: FPGA: 'ZDACW 28595' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:41.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:41.728 -07 000000438 INF: FPGA: Recv ZDACR 28595
17-03-17 21:29:41.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:41.878 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:41.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:41.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29666
17-03-17 21:29:41.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:29:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29670
17-03-17 21:29:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.928 -07 000000576 INF: FPGA: Recv ZSGSRD 29664
17-03-17 21:29:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.938 -07 000000429 INF: FPGA: Recv ZSGSRD 29660
17-03-17 21:29:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.948 -07 000000608 INF: FPGA: Recv ZSGSRD 29666
17-03-17 21:29:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.958 -07 000000547 INF: FPGA: Recv ZSGSRD 29670
17-03-17 21:29:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.968 -07 000000627 INF: FPGA: Recv ZSGSRD 29662
17-03-17 21:29:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29668
17-03-17 21:29:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:41.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29657
17-03-17 21:29:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:41.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:41.998 -07 000000458 INF: FPGA: Recv ZPIEZORD 25389
17-03-17 21:29:42.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:42.008 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.4 V.
17-03-17 21:29:42.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29665 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29665 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29657 (-130.1 uncal um), Max = 29670 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:29:42.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29665, posNoise = 5, negNoise = 8
17-03-17 21:29:42.008 -07 000000610 INF: Z Motor: After move to -0.130900, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:42.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 21:29:42.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:42.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:42.008 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:42.008 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:42.008 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:42.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:42.008 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:42.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:42.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:42.008 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:42.008 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:42.008 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:42.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:42.018 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:42.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:42.018 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:42.028 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:29:42.028 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:29:42.028 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:29:42.028 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:42.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28771 150\n [Camera]
17-03-17 21:29:42.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.997626,
17-03-17 21:29:42.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:42.658 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:42.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:42.658 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:42.658 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:42.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:42.668 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:42.668 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:42.668 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:42.668 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:42.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:29:42.848 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28771 817
17-03-17 21:29:43.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:43.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:29:43.038 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:29:43.038 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:43.038 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:43.048 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:29:43.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:29:43.048 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:29:43.048 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:43.048 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:43.058 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:29:43.208 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:43.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:43.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:43.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:43.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:29:43.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:43.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:43.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:43.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:43.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:29:43.408 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:29:43.408 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:43.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28771 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:29:43.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:43.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130897605196474. ------
17-03-17 21:29:43.408 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:43.408 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13757 mm
17-03-17 21:29:43.408 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:43.418 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:29:43.418 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:43.418 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:43.418 -07 000000429 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:29:43.418 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:43.418 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 21:29:43.418 -07 000000459 INF: Z Motor: Moving to -0.137569 mm, started at -0.130898 mm, distance = -6.67 um
17-03-17 21:29:43.418 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:29:43.428 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:43.428 -07 000000429 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:43.428 -07 000000429 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:43.428 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:29:43.428 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:43.438 -07 000000459 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 21:29:43.438 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:29:43.448 -07 000000459 INF: FPGA: 'ZDACW 30052' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:29:43.448 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:43.458 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:43.458 -07 000000512 INF: FPGA: Recv ZDACR 30052
17-03-17 21:29:43.468 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:43.468 -07 000000459 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:29:43.608 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:29:43.608 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:29:43.608 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:43.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:29:43.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:29:43.608 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:43.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:43.618 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:43.618 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:29:43.618 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:29:43.628 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:43.628 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 21:29:43.818 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:29:43.818 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:29:43.858 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:43.858 -07 000000608 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:29:43.868 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:43.868 -07 000000429 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:43.868 -07 000000429 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 21:29:43.868 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 21:29:44.818 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:44.818 -07 000000627 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:29:44.828 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.828 -07 000000429 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:44.848 -07 000000429 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:44.848 -07 000000429 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:44.848 -07 000000429 INF: Y Motor: Moved to 69.0269 after 1434 ms (table move)
17-03-17 21:29:44.848 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 21:29:44.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.858 -07 000000608 INF: FPGA: Recv ZSGSRD 30706
17-03-17 21:29:44.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:29:44.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.858 -07 000000424 INF: FPGA: Recv ZSGSRD 30701
17-03-17 21:29:44.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:29:44.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.878 -07 000000480 INF: FPGA: Recv ZSGSRD 30708
17-03-17 21:29:44.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.888 -07 000000627 INF: FPGA: Recv ZSGSRD 30707
17-03-17 21:29:44.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.898 -07 000000608 INF: FPGA: Recv ZSGSRD 30705
17-03-17 21:29:44.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.908 -07 000000012 INF: FPGA: Recv ZSGSRD 30702
17-03-17 21:29:44.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:44.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.918 -07 000000512 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:29:44.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.928 -07 000000475 INF: FPGA: Recv ZSGSRD 30701
17-03-17 21:29:44.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:44.938 -07 000000501 INF: FPGA: Recv ZSGSRD 30699
17-03-17 21:29:44.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.948 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:44.948 -07 000000576 INF: FPGA: Recv ZPIEZORD 26737
17-03-17 21:29:44.958 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:44.958 -07 000000547 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -8.7 V.
17-03-17 21:29:44.958 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30704 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30704 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30699 (-136.7 uncal um), Max = 30708 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:29:44.958 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30704, posNoise = 4, negNoise = 5
17-03-17 21:29:44.958 -07 000000547 INF: Z Motor: After move to -0.137569, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:44.958 -07 000000547 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:29:44.958 -07 000000547 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:45.008 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:29:45.008 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:45.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:45.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:45.008 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:45.008 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:45.008 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:45.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:45.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:45.008 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:45.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:45.018 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:45.028 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:29:45.028 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:29:45.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:45.078 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:45.278 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:45.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:45.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:45.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:29:45.318 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:45.318 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:45.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:29:45.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:29:45.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:45.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:45.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:29:45.418 -07 000000475 INF: Autofocus start
17-03-17 21:29:45.418 -07 000000475 INF: MeasureProfile start
17-03-17 21:29:45.418 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:45.418 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:45.428 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:45.428 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:45.428 -07 000000475 INF: MeasureProfile done
17-03-17 21:29:45.428 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:45.428 -07 000000475 INF: Autofocus finished
17-03-17 21:29:45.628 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:45.628 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:45.628 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.137572361611763. ----------
17-03-17 21:29:45.628 -07 000000610 INF: Cycle	51	Tile	12	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:45.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28559, sync = True, waitForSettling = True)
17-03-17 21:29:45.638 -07 000000610 INF: Z Motor: Moving to -0.130735 mm, started at -0.137572 mm, distance = 6.84 um
17-03-17 21:29:45.638 -07 000000610 INF: FPGA: Xmit ZDACW 28559\n [Z Motor]
17-03-17 21:29:45.638 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:29:45.648 -07 000000610 INF: FPGA: 'ZDACW 28559' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:45.648 -07 000000476 INF: FPGA: Recv ZDACR 28559
17-03-17 21:29:45.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.808 -07 000000576 INF: FPGA: Recv ZSGSRD 29640
17-03-17 21:29:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29643
17-03-17 21:29:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.828 -07 000000512 INF: FPGA: Recv ZSGSRD 29635
17-03-17 21:29:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.838 -07 000000547 INF: FPGA: Recv ZSGSRD 29638
17-03-17 21:29:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.848 -07 000000012 INF: FPGA: Recv ZSGSRD 29639
17-03-17 21:29:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.858 -07 000000424 INF: FPGA: Recv ZSGSRD 29642
17-03-17 21:29:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.868 -07 000000475 INF: FPGA: Recv ZSGSRD 29641
17-03-17 21:29:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29635
17-03-17 21:29:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29641
17-03-17 21:29:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:45.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29643
17-03-17 21:29:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:45.908 -07 000000458 INF: FPGA: Recv ZPIEZORD 25374
17-03-17 21:29:45.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:45.918 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.4 V.
17-03-17 21:29:45.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29643 (-130.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:29:45.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 3, negNoise = 5
17-03-17 21:29:45.918 -07 000000610 INF: Z Motor: After move to -0.130735, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:45.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:29:45.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:45.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:45.918 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:45.918 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:45.918 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:45.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:45.918 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:45.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:45.928 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:29:45.928 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:45.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:29:45.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:45.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:29:45.928 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:45.928 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:45.928 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:45.938 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:29:45.938 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:29:45.938 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:29:45.938 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:29:45.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28736 150\n [Camera]
17-03-17 21:29:46.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:46.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:46.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:46.568 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:46.568 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:46.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 21:29:46.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:46.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:46.578 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:46.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:46.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 21:29:46.768 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28736 817
17-03-17 21:29:46.878 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:46.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:46.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 968
17-03-17 21:29:46.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:29:46.958 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:29:46.958 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:46.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:29:46.958 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:29:46.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:46.958 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:29:46.958 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:29:46.958 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:29:46.968 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:29:47.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:47.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:47.128 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:47.128 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:47.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:29:47.128 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:47.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:47.128 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:47.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:47.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:29:47.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:29:47.318 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:47.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28736 150' command took 2 ms to send, 1373 ms to get response, and 1377 ms overall
17-03-17 21:29:47.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:47.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.13073699989293. ------
17-03-17 21:29:47.318 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:47.318 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13715 mm
17-03-17 21:29:47.318 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:47.328 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:29:47.328 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29960, sync = True, waitForSettling = False)
17-03-17 21:29:47.328 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:29:47.328 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:47.328 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:47.328 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:47.328 -07 000000512 INF: Z Motor: Moving to -0.137148 mm, started at -0.130737 mm, distance = -6.41 um
17-03-17 21:29:47.328 -07 000000438 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:29:47.338 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:47.338 -07 000000627 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:47.338 -07 000000512 INF: FPGA: Xmit ZDACW 29960\n [Z Motor]
17-03-17 21:29:47.458 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:47.458 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:29:47.458 -07 000000512 INF: FPGA: 'ZDACW 29960' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-17 21:29:47.458 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:47.458 -07 000000627 INF: Y Motor: Moving 1352 steps-32
17-03-17 21:29:47.468 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:47.478 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:47.478 -07 000000415 INF: FPGA: Recv ZDACR 29960
17-03-17 21:29:47.488 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:29:47.488 -07 000000512 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-17 21:29:47.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:29:47.518 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:29:47.518 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:47.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:29:47.518 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:29:47.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:47.528 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:47.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:47.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:29:47.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:29:47.598 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.981281,
17-03-17 21:29:47.668 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:47.668 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 338 ms overall
17-03-17 21:29:47.838 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:29:47.838 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 21:29:47.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:47.888 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:29:47.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:29:47.888 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:47.888 -07 000000627 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:29:47.888 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.846 mm, average velocity = 2.232 mm/sec
17-03-17 21:29:48.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:48.838 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:29:48.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.848 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:48.868 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:48.868 -07 000000627 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:48.868 -07 000000627 INF: Y Motor: Moved to 69.8633 after 1543 ms (table move)
17-03-17 21:29:48.868 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137148 mm (DAC = 29960)
17-03-17 21:29:48.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.878 -07 000000480 INF: FPGA: Recv ZSGSRD 30643
17-03-17 21:29:48.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:29:48.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.878 -07 000000382 INF: FPGA: Recv ZSGSRD 30643
17-03-17 21:29:48.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:29:48.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.888 -07 000000431 INF: FPGA: Recv ZSGSRD 30646
17-03-17 21:29:48.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.898 -07 000000458 INF: FPGA: Recv ZSGSRD 30636
17-03-17 21:29:48.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.908 -07 000000627 INF: FPGA: Recv ZSGSRD 30643
17-03-17 21:29:48.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.918 -07 000000012 INF: FPGA: Recv ZSGSRD 30639
17-03-17 21:29:48.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.928 -07 000000569 INF: FPGA: Recv ZSGSRD 30631
17-03-17 21:29:48.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30637
17-03-17 21:29:48.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.948 -07 000000512 INF: FPGA: Recv ZSGSRD 30637
17-03-17 21:29:48.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:48.958 -07 000000429 INF: FPGA: Recv ZSGSRD 30649
17-03-17 21:29:48.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.968 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:48.968 -07 000000415 INF: FPGA: Recv ZPIEZORD 26709
17-03-17 21:29:48.978 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:48.978 -07 000000608 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -8.7 V.
17-03-17 21:29:48.978 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30640 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30641 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30631 (-136.3 uncal um), Max = 30649 (-136.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:29:48.978 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30640, posNoise = 9, negNoise = 9
17-03-17 21:29:48.978 -07 000000608 INF: Z Motor: After move to -0.137148, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:48.978 -07 000000608 INF: Z Motor: Settle wait time = 1546 ms, measure time = 102 ms (allowed 150 ms), total time = 1648 ms
17-03-17 21:29:48.978 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:49.028 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 21:29:49.028 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:49.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:49.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:49.028 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:49.028 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:49.028 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:49.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:49.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:49.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:49.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:49.038 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:49.038 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:29:49.038 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:29:49.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:49.088 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:49.288 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:49.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:49.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:49.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:49.328 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:49.328 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:49.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:29:49.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:29:49.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:49.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:49.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:29:49.428 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:49.438 -07 000000608 INF: Autofocus start
17-03-17 21:29:49.438 -07 000000608 INF: MeasureProfile start
17-03-17 21:29:49.438 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:49.448 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:49.448 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:49.458 -07 000000608 INF: MeasureProfile done
17-03-17 21:29:49.458 -07 000000608 INF: X=10  Z correction [um]=0.02415557
17-03-17 21:29:49.458 -07 000000608 INF: Autofocus finished
17-03-17 21:29:49.648 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:49.648 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:49.648 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.137161212034691. ----------
17-03-17 21:29:49.648 -07 000000610 INF: Cycle	51	Tile	13	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:49.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28478, sync = True, waitForSettling = True)
17-03-17 21:29:49.658 -07 000000610 INF: Z Motor: Moving to -0.130364 mm, started at -0.137161 mm, distance = 6.80 um
17-03-17 21:29:49.658 -07 000000610 INF: FPGA: Xmit ZDACW 28478\n [Z Motor]
17-03-17 21:29:49.658 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:29:49.668 -07 000000610 INF: FPGA: 'ZDACW 28478' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:49.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:49.668 -07 000000476 INF: FPGA: Recv ZDACR 28478
17-03-17 21:29:49.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29584
17-03-17 21:29:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29580
17-03-17 21:29:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.848 -07 000000547 INF: FPGA: Recv ZSGSRD 29583
17-03-17 21:29:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.858 -07 000000626 INF: FPGA: Recv ZSGSRD 29579
17-03-17 21:29:49.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.868 -07 000000476 INF: FPGA: Recv ZSGSRD 29582
17-03-17 21:29:49.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.878 -07 000000576 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:29:49.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29587
17-03-17 21:29:49.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.898 -07 000000458 INF: FPGA: Recv ZSGSRD 29585
17-03-17 21:29:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.908 -07 000000012 INF: FPGA: Recv ZSGSRD 29580
17-03-17 21:29:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:49.918 -07 000000512 INF: FPGA: Recv ZSGSRD 29581
17-03-17 21:29:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:49.928 -07 000000576 INF: FPGA: Recv ZPIEZORD 25332
17-03-17 21:29:49.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:49.938 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.3 V.
17-03-17 21:29:49.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29583 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29579 (-129.6 uncal um), Max = 29589 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:49.938 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29583, posNoise = 6, negNoise = 4
17-03-17 21:29:49.938 -07 000000610 INF: Z Motor: After move to -0.130364, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:49.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:29:49.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:49.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:49.938 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:49.938 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:49.938 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:49.938 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:49.938 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:49.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:49.938 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 21:29:49.938 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:49.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:49.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:49.948 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:49.948 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:49.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:49.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:49.958 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:29:49.958 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:29:49.958 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:29:49.958 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:29:49.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28655 150\n [Camera]
17-03-17 21:29:50.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:50.598 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:50.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:50.598 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:50.598 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:50.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:50.598 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:50.598 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:50.598 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:50.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:50.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:29:50.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28655 817
17-03-17 21:29:50.938 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:50.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:29:50.998 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:29:50.998 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:50.998 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:29:50.998 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:29:50.998 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:50.998 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:50.998 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:29:50.998 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:51.008 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:29:51.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:51.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:51.148 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:51.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:51.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:51.148 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:51.158 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:51.158 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:29:51.158 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:51.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:29:51.338 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:51.338 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:51.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28655 150' command took 2 ms to send, 1366 ms to get response, and 1375 ms overall
17-03-17 21:29:51.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:51.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130370819800849. ------
17-03-17 21:29:51.348 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:51.348 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13676 mm
17-03-17 21:29:51.348 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:51.348 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:51.348 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:29:51.348 -07 000000475 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:29:51.348 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29875, sync = True, waitForSettling = False)
17-03-17 21:29:51.348 -07 000000382 INF: Z Motor: Moving to -0.136759 mm, started at -0.130371 mm, distance = -6.39 um
17-03-17 21:29:51.468 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-17 21:29:51.468 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:51.468 -07 000000608 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:29:51.478 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-17 21:29:51.478 -07 000000475 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:51.478 -07 000000475 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:51.478 -07 000000475 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:29:51.478 -07 000000382 INF: FPGA: Xmit ZDACW 29875\n [Z Motor]
17-03-17 21:29:51.478 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:29:51.488 -07 000000382 INF: FPGA: 'ZDACW 29875' command took 1 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 21:29:51.488 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:51.498 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:51.508 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:51.508 -07 000000476 INF: FPGA: Recv ZDACR 29875
17-03-17 21:29:51.518 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:51.518 -07 000000382 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-17 21:29:51.558 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:29:51.558 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:29:51.558 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:51.558 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:29:51.558 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:29:51.558 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:51.558 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:51.558 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:29:51.558 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:51.568 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:29:51.688 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:51.688 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 21:29:51.868 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:29:51.868 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 21:29:51.878 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:51.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:51.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:51.918 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:29:51.918 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:29:51.918 -07 000000475 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:51.918 -07 000000475 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:29:51.918 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:29:52.868 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:52.868 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:29:52.878 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:52.878 -07 000000475 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:52.898 -07 000000475 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:52.898 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:29:52.898 -07 000000475 INF: Y Motor: Moved to 70.6885 after 1549 ms (table move)
17-03-17 21:29:52.898 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136759 mm (DAC = 29875)
17-03-17 21:29:52.898 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.908 -07 000000512 INF: FPGA: Recv ZSGSRD 30575
17-03-17 21:29:52.908 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 21:29:52.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.908 -07 000000626 INF: FPGA: Recv ZSGSRD 30584
17-03-17 21:29:52.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:29:52.918 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.918 -07 000000438 INF: FPGA: Recv ZSGSRD 30585
17-03-17 21:29:52.928 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:52.928 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.928 -07 000000627 INF: FPGA: Recv ZSGSRD 30579
17-03-17 21:29:52.938 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:52.938 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30582
17-03-17 21:29:52.948 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:52.958 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 3.99219,
17-03-17 21:29:52.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30578
17-03-17 21:29:52.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:29:52.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30575
17-03-17 21:29:52.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:52.998 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:52.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30583
17-03-17 21:29:53.008 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.018 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.018 -07 000000547 INF: FPGA: Recv ZSGSRD 30580
17-03-17 21:29:53.028 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:29:53.028 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30573
17-03-17 21:29:53.038 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.058 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:53.058 -07 000000012 INF: FPGA: Recv ZPIEZORD 26642
17-03-17 21:29:53.068 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:53.068 -07 000000458 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -8.7 V.
17-03-17 21:29:53.068 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30579 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30580 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30573 (-135.9 uncal um), Max = 30585 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:29:53.068 -07 000000458 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30579, posNoise = 6, negNoise = 6
17-03-17 21:29:53.068 -07 000000458 INF: Z Motor: After move to -0.136759, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:53.068 -07 000000458 INF: Z Motor: Settle wait time = 1552 ms, measure time = 163 ms (allowed 150 ms), total time = 1715 ms
17-03-17 21:29:53.068 -07 000000458 INF: Z Motor: Warning: Actual position measuring time = 163 ms, longer than max expected time of 150 ms
17-03-17 21:29:53.068 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1718 ms
17-03-17 21:29:53.068 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:53.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:53.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:53.068 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:53.068 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:53.078 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:53.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:53.078 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:29:53.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:53.088 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 9 ms.
17-03-17 21:29:53.088 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:53.088 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:29:53.088 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 21:29:53.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:53.138 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:53.338 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:53.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:53.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:53.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:29:53.378 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:53.378 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:53.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:29:53.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:29:53.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:53.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:53.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:29:53.478 -07 000000576 INF: Autofocus start
17-03-17 21:29:53.478 -07 000000576 INF: MeasureProfile start
17-03-17 21:29:53.478 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:53.478 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:53.488 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:53.488 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:53.488 -07 000000576 INF: MeasureProfile done
17-03-17 21:29:53.488 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:53.488 -07 000000576 INF: Autofocus finished
17-03-17 21:29:53.688 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:53.688 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:53.688 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136769335094043. ----------
17-03-17 21:29:53.688 -07 000000610 INF: Cycle	51	Tile	14	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:53.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28382, sync = True, waitForSettling = True)
17-03-17 21:29:53.698 -07 000000610 INF: Z Motor: Moving to -0.129924 mm, started at -0.136769 mm, distance = 6.84 um
17-03-17 21:29:53.698 -07 000000610 INF: FPGA: Xmit ZDACW 28382\n [Z Motor]
17-03-17 21:29:53.698 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:29:53.708 -07 000000610 INF: FPGA: 'ZDACW 28382' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:53.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:53.708 -07 000000431 INF: FPGA: Recv ZDACR 28382
17-03-17 21:29:53.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.868 -07 000000424 INF: FPGA: Recv ZSGSRD 29510
17-03-17 21:29:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:29:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.888 -07 000000608 INF: FPGA: Recv ZSGSRD 29513
17-03-17 21:29:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.898 -07 000000438 INF: FPGA: Recv ZSGSRD 29512
17-03-17 21:29:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.908 -07 000000431 INF: FPGA: Recv ZSGSRD 29513
17-03-17 21:29:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.918 -07 000000012 INF: FPGA: Recv ZSGSRD 29516
17-03-17 21:29:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.928 -07 000000459 INF: FPGA: Recv ZSGSRD 29514
17-03-17 21:29:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.938 -07 000000627 INF: FPGA: Recv ZSGSRD 29513
17-03-17 21:29:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.948 -07 000000429 INF: FPGA: Recv ZSGSRD 29513
17-03-17 21:29:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:53.958 -07 000000476 INF: FPGA: Recv ZSGSRD 29516
17-03-17 21:29:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:53.968 -07 000000424 INF: FPGA: Recv ZPIEZORD 25196
17-03-17 21:29:53.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:53.978 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.5 V.
17-03-17 21:29:53.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29514 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29513 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29510 (-129.1 uncal um), Max = 29517 (-129.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:29:53.978 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29514, posNoise = 3, negNoise = 4
17-03-17 21:29:53.978 -07 000000610 INF: Z Motor: After move to -0.129924, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:53.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:29:53.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:53.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:53.978 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:53.978 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:53.978 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:53.978 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:53.978 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:53.978 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:53.978 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:53.978 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:53.978 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:29:53.978 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:53.988 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:53.988 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:53.988 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:53.988 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:53.998 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 21:29:53.998 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:29:54.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 21:29:54.008 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:29:54.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28559 150\n [Camera]
17-03-17 21:29:54.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:54.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:54.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:54.648 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:54.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:54.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:54.648 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:54.648 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:54.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:29:54.648 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:54.648 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:29:54.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28559 817
17-03-17 21:29:54.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:55.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:29:55.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:29:55.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:55.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:55.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:29:55.028 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:29:55.028 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:55.028 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:55.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:29:55.038 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:29:55.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:55.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:55.198 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:55.198 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:55.198 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:29:55.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:55.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:55.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:55.198 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:55.198 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:29:55.388 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:55.388 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:55.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28559 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:29:55.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:55.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129927549163068. ------
17-03-17 21:29:55.388 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13617 mm
17-03-17 21:29:55.388 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:55.388 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:55.398 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:29:55.398 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 21:29:55.398 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:55.398 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29747, sync = True, waitForSettling = False)
17-03-17 21:29:55.398 -07 000000476 INF: Z Motor: Moving to -0.136173 mm, started at -0.129928 mm, distance = -6.25 um
17-03-17 21:29:55.398 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:55.398 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:29:55.398 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:29:55.408 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:55.408 -07 000000415 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:55.408 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:55.408 -07 000000415 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:29:55.408 -07 000000476 INF: FPGA: Xmit ZDACW 29747\n [Z Motor]
17-03-17 21:29:55.408 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:29:55.418 -07 000000476 INF: FPGA: 'ZDACW 29747' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:29:55.418 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:55.428 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:55.438 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:55.438 -07 000000512 INF: FPGA: Recv ZDACR 29747
17-03-17 21:29:55.448 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:55.448 -07 000000476 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:29:55.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:29:55.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:29:55.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:55.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:29:55.598 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:29:55.598 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:55.598 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:55.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:29:55.608 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:29:55.608 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:29:55.618 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:55.618 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:29:55.798 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:29:55.798 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:29:55.838 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:55.838 -07 000000476 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:29:55.848 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:29:55.848 -07 000000415 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:55.848 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:29:55.848 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:29:56.798 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:56.798 -07 000000429 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:29:56.808 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:56.808 -07 000000415 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:56.828 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:29:56.828 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:29:56.828 -07 000000415 INF: Y Motor: Moved to 71.5186 after 1432 ms (table move)
17-03-17 21:29:56.828 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136173 mm (DAC = 29747)
17-03-17 21:29:56.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30490
17-03-17 21:29:56.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:29:56.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.838 -07 000000576 INF: FPGA: Recv ZSGSRD 30485
17-03-17 21:29:56.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:56.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.848 -07 000000424 INF: FPGA: Recv ZSGSRD 30483
17-03-17 21:29:56.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.858 -07 000000476 INF: FPGA: Recv ZSGSRD 30489
17-03-17 21:29:56.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.868 -07 000000608 INF: FPGA: Recv ZSGSRD 30490
17-03-17 21:29:56.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.878 -07 000000459 INF: FPGA: Recv ZSGSRD 30491
17-03-17 21:29:56.878 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:29:56.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:29:56.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.888 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.888 -07 000000431 INF: FPGA: Recv ZSGSRD 30492
17-03-17 21:29:56.898 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.898 -07 000000480 INF: FPGA: Recv ZSGSRD 30479
17-03-17 21:29:56.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.908 -07 000000458 INF: FPGA: Recv ZSGSRD 30486
17-03-17 21:29:56.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.918 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:56.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30482
17-03-17 21:29:56.928 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.928 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:56.928 -07 000000626 INF: FPGA: Recv ZPIEZORD 26517
17-03-17 21:29:56.938 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:56.938 -07 000000501 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -8.7 V.
17-03-17 21:29:56.938 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30487 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30488 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30479 (-135.3 uncal um), Max = 30492 (-135.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:29:56.938 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30487, posNoise = 5, negNoise = 8
17-03-17 21:29:56.938 -07 000000501 INF: Z Motor: After move to -0.136173, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:56.938 -07 000000501 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:29:56.938 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:29:56.988 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:29:56.988 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:29:56.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:56.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:56.988 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:56.988 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:29:56.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:56.988 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:56.988 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:29:56.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:29:56.998 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:29:56.998 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:29:56.998 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:29:56.998 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:29:57.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:29:57.048 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:29:57.248 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:29:57.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:29:57.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:29:57.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:29:57.288 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:29:57.288 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:29:57.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:29:57.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:29:57.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:57.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:29:57.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:29:57.388 -07 000000608 INF: Autofocus start
17-03-17 21:29:57.388 -07 000000608 INF: MeasureProfile start
17-03-17 21:29:57.388 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:57.398 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:57.398 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:57.398 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:29:57.408 -07 000000608 INF: MeasureProfile done
17-03-17 21:29:57.408 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:29:57.408 -07 000000608 INF: Autofocus finished
17-03-17 21:29:57.598 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:29:57.598 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:29:57.598 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.136178307577001. ----------
17-03-17 21:29:57.608 -07 000000610 INF: Cycle	51	Tile	15	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:29:57.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28254, sync = True, waitForSettling = True)
17-03-17 21:29:57.608 -07 000000610 INF: Z Motor: Moving to -0.129339 mm, started at -0.136178 mm, distance = 6.84 um
17-03-17 21:29:57.608 -07 000000610 INF: FPGA: Xmit ZDACW 28254\n [Z Motor]
17-03-17 21:29:57.608 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:29:57.618 -07 000000610 INF: FPGA: 'ZDACW 28254' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:29:57.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:57.618 -07 000000569 INF: FPGA: Recv ZDACR 28254
17-03-17 21:29:57.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:29:57.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.778 -07 000000512 INF: FPGA: Recv ZSGSRD 29420
17-03-17 21:29:57.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:57.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.788 -07 000000012 INF: FPGA: Recv ZSGSRD 29425
17-03-17 21:29:57.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29419
17-03-17 21:29:57.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29425
17-03-17 21:29:57.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29422
17-03-17 21:29:57.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29422
17-03-17 21:29:57.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29429
17-03-17 21:29:57.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.848 -07 000000459 INF: FPGA: Recv ZSGSRD 29422
17-03-17 21:29:57.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.858 -07 000000547 INF: FPGA: Recv ZSGSRD 29424
17-03-17 21:29:57.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:29:57.868 -07 000000626 INF: FPGA: Recv ZSGSRD 29417
17-03-17 21:29:57.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:29:57.878 -07 000000458 INF: FPGA: Recv ZPIEZORD 25103
17-03-17 21:29:57.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:29:57.888 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.5 V.
17-03-17 21:29:57.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29422 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29422 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29417 (-128.5 uncal um), Max = 29429 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:29:57.888 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29422, posNoise = 7, negNoise = 5
17-03-17 21:29:57.888 -07 000000610 INF: Z Motor: After move to -0.129339, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:29:57.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:29:57.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:29:57.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:29:57.888 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:29:57.888 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:29:57.888 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:29:57.888 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:29:57.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:29:57.888 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:29:57.888 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:29:57.888 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:29:57.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:29:57.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:29:57.898 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:29:57.898 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:29:57.898 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:29:57.898 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:29:57.908 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:29:57.908 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:29:57.908 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:29:57.908 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:29:57.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28431 150\n [Camera]
17-03-17 21:29:58.118 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:29:58.378 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.008536,
17-03-17 21:29:58.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:29:58.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:29:58.548 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:58.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:58.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:29:58.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:29:58.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:29:58.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:58.548 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:58.548 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:29:58.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28431 817
17-03-17 21:29:58.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:29:58.938 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:29:58.938 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:29:58.938 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:58.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:29:58.938 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:29:58.938 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:58.948 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:58.948 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:29:58.948 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:29:58.958 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:29:59.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:29:59.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:29:59.098 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:29:59.098 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:29:59.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:29:59.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:29:59.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:29:59.098 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:29:59.098 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:29:59.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:29:59.288 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:29:59.288 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:29:59.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28431 150' command took 2 ms to send, 1365 ms to get response, and 1375 ms overall
17-03-17 21:29:59.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:29:59.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.129336521646026. ------
17-03-17 21:29:59.408 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13569 mm
17-03-17 21:29:59.408 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:29:59.418 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:29:59.418 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:29:59.418 -07 000000476 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:29:59.418 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:29:59.418 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29642, sync = True, waitForSettling = False)
17-03-17 21:29:59.418 -07 000000438 INF: Z Motor: Moving to -0.135692 mm, started at -0.129337 mm, distance = -6.36 um
17-03-17 21:29:59.428 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:29:59.428 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:59.428 -07 000000627 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:29:59.438 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:29:59.438 -07 000000476 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:59.438 -07 000000476 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:29:59.438 -07 000000476 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:29:59.438 -07 000000438 INF: FPGA: Xmit ZDACW 29642\n [Z Motor]
17-03-17 21:29:59.438 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:29:59.448 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:29:59.448 -07 000000438 INF: FPGA: 'ZDACW 29642' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:29:59.458 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:29:59.468 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:29:59.468 -07 000000475 INF: FPGA: Recv ZDACR 29642
17-03-17 21:29:59.478 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:29:59.478 -07 000000438 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 21:29:59.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:29:59.498 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:29:59.498 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:59.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:29:59.498 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:29:59.498 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:29:59.508 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:29:59.508 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:29:59.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:29:59.508 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:29:59.648 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:29:59.648 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:29:59.828 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:29:59.828 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:29:59.868 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:29:59.868 -07 000000547 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:29:59.878 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:29:59.878 -07 000000476 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:29:59.878 -07 000000476 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:29:59.878 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:30:00.828 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:00.828 -07 000000576 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:30:00.838 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.838 -07 000000476 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:00.858 -07 000000476 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:30:00.858 -07 000000476 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:30:00.858 -07 000000476 INF: Y Motor: Moved to 72.3491 after 1440 ms (table move)
17-03-17 21:30:00.858 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135692 mm (DAC = 29642)
17-03-17 21:30:00.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.868 -07 000000458 INF: FPGA: Recv ZSGSRD 30414
17-03-17 21:30:00.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:30:00.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30413
17-03-17 21:30:00.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:30:00.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.878 -07 000000608 INF: FPGA: Recv ZSGSRD 30420
17-03-17 21:30:00.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.888 -07 000000547 INF: FPGA: Recv ZSGSRD 30411
17-03-17 21:30:00.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.898 -07 000000475 INF: FPGA: Recv ZSGSRD 30417
17-03-17 21:30:00.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.908 -07 000000458 INF: FPGA: Recv ZSGSRD 30410
17-03-17 21:30:00.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30412
17-03-17 21:30:00.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.928 -07 000000608 INF: FPGA: Recv ZSGSRD 30407
17-03-17 21:30:00.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.938 -07 000000547 INF: FPGA: Recv ZSGSRD 30410
17-03-17 21:30:00.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:00.948 -07 000000475 INF: FPGA: Recv ZSGSRD 30417
17-03-17 21:30:00.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.958 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:00.958 -07 000000512 INF: FPGA: Recv ZPIEZORD 26478
17-03-17 21:30:00.968 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:00.968 -07 000000382 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -8.7 V.
17-03-17 21:30:00.968 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30413 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30412 (-134.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30407 (-134.9 uncal um), Max = 30420 (-135.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:30:00.968 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30413, posNoise = 7, negNoise = 6
17-03-17 21:30:00.968 -07 000000382 INF: Z Motor: After move to -0.135692, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:00.968 -07 000000382 INF: Z Motor: Settle wait time = 1445 ms, measure time = 101 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:30:00.968 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:30:01.018 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:30:01.018 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:30:01.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:01.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:01.018 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:01.018 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:01.018 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:30:01.018 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:01.018 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:30:01.018 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:30:01.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:30:01.028 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:30:01.028 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:30:01.028 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:30:01.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:30:01.078 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:30:01.278 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:30:01.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:30:01.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:30:01.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:30:01.318 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:30:01.318 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:30:01.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:30:01.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:30:01.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:01.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:30:01.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:30:01.418 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:01.418 -07 000000576 INF: Autofocus start
17-03-17 21:30:01.418 -07 000000576 INF: MeasureProfile start
17-03-17 21:30:01.418 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:01.428 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:30:01.428 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:30:01.428 -07 000000576 INF: MeasureProfile done
17-03-17 21:30:01.438 -07 000000576 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:30:01.438 -07 000000576 INF: Autofocus finished
17-03-17 21:30:01.628 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:30:01.628 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:30:01.638 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135702915878511. ----------
17-03-17 21:30:01.638 -07 000000610 INF: Cycle	51	Tile	16	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:30:01.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28137, sync = True, waitForSettling = True)
17-03-17 21:30:01.638 -07 000000610 INF: Z Motor: Moving to -0.128803 mm, started at -0.135703 mm, distance = 6.90 um
17-03-17 21:30:01.638 -07 000000610 INF: FPGA: Xmit ZDACW 28137\n [Z Motor]
17-03-17 21:30:01.638 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:30:01.648 -07 000000610 INF: FPGA: 'ZDACW 28137' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:30:01.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:01.648 -07 000000501 INF: FPGA: Recv ZDACR 28137
17-03-17 21:30:01.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:30:01.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29337
17-03-17 21:30:01.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.818 -07 000000438 INF: FPGA: Recv ZSGSRD 29339
17-03-17 21:30:01.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29339
17-03-17 21:30:01.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.838 -07 000000382 INF: FPGA: Recv ZSGSRD 29339
17-03-17 21:30:01.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.848 -07 000000424 INF: FPGA: Recv ZSGSRD 29343
17-03-17 21:30:01.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.858 -07 000000608 INF: FPGA: Recv ZSGSRD 29340
17-03-17 21:30:01.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.868 -07 000000576 INF: FPGA: Recv ZSGSRD 29339
17-03-17 21:30:01.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.878 -07 000000431 INF: FPGA: Recv ZSGSRD 29336
17-03-17 21:30:01.878 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:01.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:30:01.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29346
17-03-17 21:30:01.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:01.898 -07 000000626 INF: FPGA: Recv ZSGSRD 29340
17-03-17 21:30:01.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:01.908 -07 000000415 INF: FPGA: Recv ZPIEZORD 25022
17-03-17 21:30:01.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:01.918 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.5 V.
17-03-17 21:30:01.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29340 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29339 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29336 (-128.0 uncal um), Max = 29346 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:30:01.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29340, posNoise = 6, negNoise = 4
17-03-17 21:30:01.918 -07 000000610 INF: Z Motor: After move to -0.128803, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:01.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:30:01.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:01.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:01.918 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:01.918 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:30:01.918 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:01.918 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:30:01.918 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:30:01.918 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:01.918 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:30:01.918 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:30:01.918 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:30:01.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:30:01.928 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:30:01.928 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:30:01.928 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:30:01.928 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:30:01.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:30:01.938 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:30:01.938 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:30:01.938 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:30:01.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28313 150\n [Camera]
17-03-17 21:30:02.138 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:30:02.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:30:02.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:30:02.568 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:02.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:30:02.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:30:02.568 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:02.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:02.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:30:02.578 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:02.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 21:30:02.758 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28313 817
17-03-17 21:30:02.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:30:02.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:30:02.958 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:30:02.958 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:02.958 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:02.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:30:02.968 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:30:02.968 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:30:02.968 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:02.968 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:02.978 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:30:03.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1176
17-03-17 21:30:03.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1176
17-03-17 21:30:03.118 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:03.128 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1176
17-03-17 21:30:03.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1176
17-03-17 21:30:03.128 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:03.128 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:03.128 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:30:03.138 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:03.138 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:30:03.308 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1368
17-03-17 21:30:03.308 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:30:03.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28313 150' command took 2 ms to send, 1367 ms to get response, and 1375 ms overall
17-03-17 21:30:03.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:30:03.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128809736250401. ------
17-03-17 21:30:03.438 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13534 mm
17-03-17 21:30:03.438 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:30:03.438 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:03.438 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:30:03.438 -07 000000415 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:30:03.438 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29565, sync = True, waitForSettling = False)
17-03-17 21:30:03.438 -07 000000458 INF: Z Motor: Moving to -0.135340 mm, started at -0.128810 mm, distance = -6.53 um
17-03-17 21:30:03.438 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:03.448 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:03.448 -07 000000458 INF: FPGA: Xmit ZDACW 29565\n [Z Motor]
17-03-17 21:30:03.448 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:30:03.458 -07 000000458 INF: FPGA: 'ZDACW 29565' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:30:03.458 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:03.458 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:30:03.468 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:30:03.468 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:30:03.468 -07 000000415 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:03.468 -07 000000415 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:30:03.468 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:30:03.478 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:03.478 -07 000000569 INF: FPGA: Recv ZDACR 29565
17-03-17 21:30:03.488 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:30:03.488 -07 000000458 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:30:03.488 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:30:03.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:30:03.528 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:30:03.528 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:03.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:30:03.528 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:30:03.528 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:03.528 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:03.528 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:30:03.528 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:30:03.538 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:30:03.668 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:30:03.668 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:30:03.748 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.011254,
17-03-17 21:30:03.858 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:30:03.858 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:30:03.898 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:03.908 -07 000000480 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:30:03.908 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:30:03.908 -07 000000415 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:03.908 -07 000000415 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 21:30:03.908 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.141 mm/sec
17-03-17 21:30:04.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:04.858 -07 000000476 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:30:04.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.868 -07 000000415 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:04.888 -07 000000415 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:30:04.888 -07 000000415 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:30:04.888 -07 000000415 INF: Y Motor: Moved to 73.1758 after 1451 ms (table move)
17-03-17 21:30:04.888 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135340 mm (DAC = 29565)
17-03-17 21:30:04.888 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.898 -07 000000626 INF: FPGA: Recv ZSGSRD 30360
17-03-17 21:30:04.898 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:30:04.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.898 -07 000000476 INF: FPGA: Recv ZSGSRD 30358
17-03-17 21:30:04.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:30:04.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.908 -07 000000438 INF: FPGA: Recv ZSGSRD 30363
17-03-17 21:30:04.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.918 -07 000000608 INF: FPGA: Recv ZSGSRD 30356
17-03-17 21:30:04.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.928 -07 000000424 INF: FPGA: Recv ZSGSRD 30362
17-03-17 21:30:04.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30362
17-03-17 21:30:04.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.948 -07 000000512 INF: FPGA: Recv ZSGSRD 30354
17-03-17 21:30:04.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.958 -07 000000415 INF: FPGA: Recv ZSGSRD 30352
17-03-17 21:30:04.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.968 -07 000000608 INF: FPGA: Recv ZSGSRD 30351
17-03-17 21:30:04.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:04.978 -07 000000424 INF: FPGA: Recv ZSGSRD 30354
17-03-17 21:30:04.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.988 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:04.988 -07 000000475 INF: FPGA: Recv ZPIEZORD 26393
17-03-17 21:30:04.998 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:04.998 -07 000000429 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -8.7 V.
17-03-17 21:30:04.998 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30357 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30357 (-134.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30351 (-134.5 uncal um), Max = 30363 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:30:04.998 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30357, posNoise = 6, negNoise = 6
17-03-17 21:30:04.998 -07 000000429 INF: Z Motor: After move to -0.135340, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:04.998 -07 000000429 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms
17-03-17 21:30:04.998 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:30:05.048 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 21:30:05.048 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:30:05.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:05.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:05.048 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:05.048 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:05.048 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:30:05.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:05.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:30:05.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:30:05.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:30:05.058 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:30:05.068 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:30:05.068 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:30:05.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:30:05.108 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:30:05.308 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:30:05.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:30:05.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:30:05.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:30:05.348 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:30:05.348 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:30:05.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:30:05.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:30:05.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:05.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:30:05.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:30:05.448 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:05.448 -07 000000431 INF: Autofocus start
17-03-17 21:30:05.448 -07 000000431 INF: MeasureProfile start
17-03-17 21:30:05.448 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:05.458 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:30:05.458 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:30:05.458 -07 000000431 INF: MeasureProfile done
17-03-17 21:30:05.458 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:30:05.458 -07 000000431 INF: Autofocus finished
17-03-17 21:30:05.658 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:30:05.658 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:30:05.658 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.135343159998572. ----------
17-03-17 21:30:05.668 -07 000000610 INF: Cycle	51	Tile	17	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:30:05.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28090, sync = True, waitForSettling = True)
17-03-17 21:30:05.668 -07 000000610 INF: Z Motor: Moving to -0.128588 mm, started at -0.135343 mm, distance = 6.76 um
17-03-17 21:30:05.668 -07 000000610 INF: FPGA: Xmit ZDACW 28090\n [Z Motor]
17-03-17 21:30:05.668 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:30:05.678 -07 000000610 INF: FPGA: 'ZDACW 28090' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:30:05.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:05.678 -07 000000476 INF: FPGA: Recv ZDACR 28090
17-03-17 21:30:05.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:30:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29310
17-03-17 21:30:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:30:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.848 -07 000000501 INF: FPGA: Recv ZSGSRD 29303
17-03-17 21:30:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.858 -07 000000512 INF: FPGA: Recv ZSGSRD 29312
17-03-17 21:30:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.868 -07 000000429 INF: FPGA: Recv ZSGSRD 29304
17-03-17 21:30:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29308
17-03-17 21:30:05.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.888 -07 000000569 INF: FPGA: Recv ZSGSRD 29312
17-03-17 21:30:05.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.898 -07 000000382 INF: FPGA: Recv ZSGSRD 29303
17-03-17 21:30:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.908 -07 000000459 INF: FPGA: Recv ZSGSRD 29308
17-03-17 21:30:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.918 -07 000000431 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:30:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:05.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29304
17-03-17 21:30:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:05.938 -07 000000458 INF: FPGA: Recv ZPIEZORD 25018
17-03-17 21:30:05.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:05.948 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.4 V.
17-03-17 21:30:05.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29307 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29307 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29303 (-127.8 uncal um), Max = 29312 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:30:05.948 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29307, posNoise = 5, negNoise = 4
17-03-17 21:30:05.948 -07 000000610 INF: Z Motor: After move to -0.128588, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:05.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:30:05.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:05.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:05.948 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:05.948 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:30:05.948 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:05.948 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:30:05.948 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:30:05.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:05.948 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:30:05.948 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:30:05.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:30:05.948 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:30:05.958 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:30:05.958 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:30:05.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:30:05.958 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:30:05.968 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:30:05.968 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:30:05.968 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:30:05.968 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:30:05.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28266 150\n [Camera]
17-03-17 21:30:06.168 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:30:06.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:30:06.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:30:06.598 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:06.598 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:30:06.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:30:06.598 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:06.608 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:06.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 21:30:06.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:06.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:30:06.788 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28266 817
17-03-17 21:30:06.878 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:06.878 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:30:06.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:30:06.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:30:06.988 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:30:06.988 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:06.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:30:06.988 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:30:06.988 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:06.988 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:30:06.988 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:30:06.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:30:06.998 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:30:07.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:30:07.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:30:07.148 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:07.148 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:07.148 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 21:30:07.148 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:30:07.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:30:07.158 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:07.158 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:07.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:30:07.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:30:07.338 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:30:07.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28266 150' command took 4 ms to send, 1368 ms to get response, and 1374 ms overall
17-03-17 21:30:07.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:30:07.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.128597737249723. ------
17-03-17 21:30:07.348 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13491 mm
17-03-17 21:30:07.348 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:30:07.348 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:07.348 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:30:07.348 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:30:07.348 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29472, sync = True, waitForSettling = False)
17-03-17 21:30:07.348 -07 000000438 INF: Z Motor: Moving to -0.134914 mm, started at -0.128598 mm, distance = -6.32 um
17-03-17 21:30:07.348 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:07.358 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:30:07.358 -07 000000438 INF: FPGA: Xmit ZDACW 29472\n [Z Motor]
17-03-17 21:30:07.358 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:30:07.368 -07 000000438 INF: FPGA: 'ZDACW 29472' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:30:07.368 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:30:07.378 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:07.378 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:30:07.388 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:07.388 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:30:07.388 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:07.388 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:30:07.388 -07 000000501 INF: Y Motor: Moving 1355 steps-34
17-03-17 21:30:07.388 -07 000000512 INF: FPGA: Recv ZDACR 29472
17-03-17 21:30:07.398 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:30:07.398 -07 000000438 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:30:07.398 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:30:07.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:30:07.538 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:30:07.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:07.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:07.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:30:07.538 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:30:07.538 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:07.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:30:07.548 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:30:07.548 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:30:07.568 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:30:07.568 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:30:07.768 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:30:07.768 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:30:07.798 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:07.808 -07 000000576 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:30:07.808 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:30:07.808 -07 000000501 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:07.808 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:30:07.808 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.847 mm, average velocity = 2.183 mm/sec
17-03-17 21:30:08.758 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:08.758 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:30:08.768 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:30:08.768 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:08.778 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:30:08.778 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:30:08.778 -07 000000501 INF: Y Motor: Moved to 74.0078 after 1428 ms (table move)
17-03-17 21:30:08.788 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134914 mm (DAC = 29472)
17-03-17 21:30:08.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.798 -07 000000547 INF: FPGA: Recv ZSGSRD 30295
17-03-17 21:30:08.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:30:08.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.808 -07 000000480 INF: FPGA: Recv ZSGSRD 30293
17-03-17 21:30:08.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.818 -07 000000576 INF: FPGA: Recv ZSGSRD 30287
17-03-17 21:30:08.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.828 -07 000000569 INF: FPGA: Recv ZSGSRD 30294
17-03-17 21:30:08.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.838 -07 000000382 INF: FPGA: Recv ZSGSRD 30294
17-03-17 21:30:08.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.848 -07 000000475 INF: FPGA: Recv ZSGSRD 30286
17-03-17 21:30:08.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.858 -07 000000608 INF: FPGA: Recv ZSGSRD 30290
17-03-17 21:30:08.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.868 -07 000000459 INF: FPGA: Recv ZSGSRD 30288
17-03-17 21:30:08.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.878 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.878 -07 000000012 INF: FPGA: Recv ZSGSRD 30295
17-03-17 21:30:08.888 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.888 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:08.888 -07 000000382 INF: FPGA: Recv ZSGSRD 30293
17-03-17 21:30:08.898 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.898 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:08.898 -07 000000476 INF: FPGA: Recv ZPIEZORD 26361
17-03-17 21:30:08.908 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:08.908 -07 000000626 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -8.7 V.
17-03-17 21:30:08.908 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30292 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30293 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30286 (-134.1 uncal um), Max = 30295 (-134.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:30:08.908 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30292, posNoise = 3, negNoise = 6
17-03-17 21:30:08.908 -07 000000626 INF: Z Motor: After move to -0.134914, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:08.908 -07 000000626 INF: Z Motor: Settle wait time = 1433 ms, measure time = 118 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:30:08.908 -07 000000626 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 21:30:08.948 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:30:08.948 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:30:08.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:08.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:08.948 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:08.948 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:08.948 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:30:08.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:08.948 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:30:08.948 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:30:08.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:30:08.958 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:30:08.958 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:30:08.958 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:30:08.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:30:09.008 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:30:09.108 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.004458,
17-03-17 21:30:09.208 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:30:09.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:30:09.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:30:09.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) start.
17-03-17 21:30:09.248 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:30:09.248 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:30:09.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:30:09.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594131328, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:30:09.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:09.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:30:09.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:30:09.348 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:09.348 -07 000000480 INF: Autofocus start
17-03-17 21:30:09.348 -07 000000480 INF: MeasureProfile start
17-03-17 21:30:09.348 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:09.358 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:30:09.358 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:30:09.358 -07 000000480 INF: MeasureProfile done
17-03-17 21:30:09.358 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:30:09.358 -07 000000480 INF: Autofocus finished
17-03-17 21:30:09.558 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:30:09.558 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:30:09.558 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134925586209358. ----------
17-03-17 21:30:09.568 -07 000000610 INF: Cycle	51	Tile	18	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:30:09.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27979, sync = True, waitForSettling = True)
17-03-17 21:30:09.568 -07 000000610 INF: Z Motor: Moving to -0.128080 mm, started at -0.134926 mm, distance = 6.85 um
17-03-17 21:30:09.568 -07 000000610 INF: FPGA: Xmit ZDACW 27979\n [Z Motor]
17-03-17 21:30:09.568 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:30:09.578 -07 000000610 INF: FPGA: 'ZDACW 27979' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:30:09.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:09.578 -07 000000480 INF: FPGA: Recv ZDACR 27979
17-03-17 21:30:09.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:30:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.738 -07 000000458 INF: FPGA: Recv ZSGSRD 29232
17-03-17 21:30:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.748 -07 000000626 INF: FPGA: Recv ZSGSRD 29229
17-03-17 21:30:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.758 -07 000000415 INF: FPGA: Recv ZSGSRD 29228
17-03-17 21:30:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29231
17-03-17 21:30:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29223
17-03-17 21:30:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.788 -07 000000576 INF: FPGA: Recv ZSGSRD 29231
17-03-17 21:30:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29225
17-03-17 21:30:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.808 -07 000000480 INF: FPGA: Recv ZSGSRD 29232
17-03-17 21:30:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:30:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29228
17-03-17 21:30:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:09.828 -07 000000512 INF: FPGA: Recv ZSGSRD 29225
17-03-17 21:30:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:09.838 -07 000000547 INF: FPGA: Recv ZPIEZORD 24935
17-03-17 21:30:09.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:09.848 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.4 V.
17-03-17 21:30:09.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29228 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29228 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29223 (-127.3 uncal um), Max = 29232 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:30:09.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29228, posNoise = 4, negNoise = 5
17-03-17 21:30:09.848 -07 000000610 INF: Z Motor: After move to -0.128080, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:09.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:30:09.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:09.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:09.848 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:09.848 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:09.848 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:30:09.848 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:09.848 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:30:09.848 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:30:09.848 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:30:09.848 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:30:09.848 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:30:09.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:30:09.858 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:30:09.858 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:30:09.858 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:30:09.858 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:30:09.868 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:30:09.868 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:30:09.868 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 21:30:09.868 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:30:09.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28156 150\n [Camera]
17-03-17 21:30:10.068 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:30:10.498 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:30:10.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:30:10.508 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:10.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:10.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:30:10.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:30:10.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:30:10.508 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:10.508 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:10.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:30:10.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28156 817
17-03-17 21:30:10.848 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:30:10.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:30:10.888 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:30:10.888 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:10.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:30:10.888 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:30:10.888 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:10.888 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:10.888 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:10.888 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:30:10.898 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:30:11.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:30:11.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:30:11.058 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:11.058 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:11.058 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:30:11.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:30:11.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:30:11.058 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:11.058 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:11.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:30:11.248 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:30:11.248 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:30:11.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28156 150' command took 2 ms to send, 1362 ms to get response, and 1374 ms overall
17-03-17 21:30:11.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:30:11.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.128090224490524. ------
17-03-17 21:30:11.368 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:11.368 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13446 mm
17-03-17 21:30:11.368 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:30:11.368 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:30:11.368 -07 000000459 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:30:11.368 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:11.368 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29372, sync = True, waitForSettling = False)
17-03-17 21:30:11.368 -07 000000569 INF: Z Motor: Moving to -0.134456 mm, started at -0.128090 mm, distance = -6.37 um
17-03-17 21:30:11.378 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:30:11.378 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:30:11.388 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:11.388 -07 000000424 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:30:11.398 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:30:11.398 -07 000000459 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:11.398 -07 000000459 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:30:11.398 -07 000000459 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:30:11.398 -07 000000569 INF: FPGA: Xmit ZDACW 29372\n [Z Motor]
17-03-17 21:30:11.398 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:30:11.408 -07 000000569 INF: FPGA: 'ZDACW 29372' command took 1 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:30:11.408 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:11.408 -07 000000480 INF: FPGA: Recv ZDACR 29372
17-03-17 21:30:11.418 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:30:11.418 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:11.418 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:30:11.458 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:30:11.458 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:30:11.458 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:11.458 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:30:11.458 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:30:11.458 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:11.468 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:11.468 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 21:30:11.468 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:30:11.468 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:30:11.578 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:30:11.578 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:30:11.788 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:30:11.788 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:30:11.818 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:11.818 -07 000000569 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:30:11.828 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:30:11.828 -07 000000459 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:11.828 -07 000000459 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:30:11.828 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 21:30:11.878 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:11.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 50. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:30:12.778 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:12.778 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:30:12.788 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:30:12.788 -07 000000459 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:12.798 -07 000000459 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:30:12.798 -07 000000459 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:30:12.798 -07 000000459 INF: Y Motor: Moved to 74.8320 after 1430 ms (table move)
17-03-17 21:30:12.798 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134456 mm (DAC = 29372)
17-03-17 21:30:12.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.808 -07 000000512 INF: FPGA: Recv ZSGSRD 30220
17-03-17 21:30:12.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:30:12.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.818 -07 000000012 INF: FPGA: Recv ZSGSRD 30213
17-03-17 21:30:12.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.828 -07 000000424 INF: FPGA: Recv ZSGSRD 30218
17-03-17 21:30:12.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.838 -07 000000608 INF: FPGA: Recv ZSGSRD 30218
17-03-17 21:30:12.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.848 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.848 -07 000000576 INF: FPGA: Recv ZSGSRD 30222
17-03-17 21:30:12.858 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.858 -07 000000512 INF: FPGA: Recv ZSGSRD 30224
17-03-17 21:30:12.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.868 -07 000000626 INF: FPGA: Recv ZSGSRD 30221
17-03-17 21:30:12.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.878 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.878 -07 000000547 INF: FPGA: Recv ZSGSRD 30224
17-03-17 21:30:12.888 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.888 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30217
17-03-17 21:30:12.898 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.898 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:12.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30214
17-03-17 21:30:12.908 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.908 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:12.908 -07 000000512 INF: FPGA: Recv ZPIEZORD 26248
17-03-17 21:30:12.918 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:12.918 -07 000000438 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -8.7 V.
17-03-17 21:30:12.918 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30219 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30219 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30213 (-133.6 uncal um), Max = 30224 (-133.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:30:12.918 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30219, posNoise = 5, negNoise = 6
17-03-17 21:30:12.918 -07 000000438 INF: Z Motor: After move to -0.134456, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:12.918 -07 000000438 INF: Z Motor: Settle wait time = 1432 ms, measure time = 112 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:30:12.918 -07 000000438 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 21:30:12.958 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 21:30:12.958 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:30:12.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:12.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:12.958 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:12.958 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:12.958 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:30:12.958 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:12.958 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:30:12.958 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:30:12.968 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:30:12.968 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:30:12.968 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:30:12.968 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:30:12.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:30:13.028 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:30:13.218 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:30:13.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:30:13.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:30:13.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:30:13.258 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:30:13.258 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:30:13.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:30:13.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:30:13.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:13.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:30:13.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:30:13.358 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:30:13.358 -07 000000569 INF: Autofocus start
17-03-17 21:30:13.358 -07 000000569 INF: MeasureProfile start
17-03-17 21:30:13.358 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:30:13.368 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:30:13.368 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:30:13.368 -07 000000569 INF: MeasureProfile done
17-03-17 21:30:13.368 -07 000000569 INF: X=41  Z correction [um]=0.1732776
17-03-17 21:30:13.368 -07 000000569 INF: Autofocus finished
17-03-17 21:30:13.568 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:30:13.568 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:30:13.568 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.134456618723009. ----------
17-03-17 21:30:13.568 -07 000000610 INF: Cycle	51	Tile	19	Exposure Settings		A	432	G	208	T	208	C	432
17-03-17 21:30:13.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27923, sync = True, waitForSettling = True)
17-03-17 21:30:13.578 -07 000000610 INF: Z Motor: Moving to -0.127823 mm, started at -0.134457 mm, distance = 6.63 um
17-03-17 21:30:13.578 -07 000000610 INF: FPGA: Xmit ZDACW 27923\n [Z Motor]
17-03-17 21:30:13.578 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:30:13.588 -07 000000610 INF: FPGA: 'ZDACW 27923' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:30:13.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:30:13.588 -07 000000012 INF: FPGA: Recv ZDACR 27923
17-03-17 21:30:13.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:30:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.748 -07 000000626 INF: FPGA: Recv ZSGSRD 29190
17-03-17 21:30:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:30:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.758 -07 000000480 INF: FPGA: Recv ZSGSRD 29189
17-03-17 21:30:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.768 -07 000000431 INF: FPGA: Recv ZSGSRD 29187
17-03-17 21:30:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.778 -07 000000475 INF: FPGA: Recv ZSGSRD 29189
17-03-17 21:30:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.788 -07 000000608 INF: FPGA: Recv ZSGSRD 29185
17-03-17 21:30:13.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.798 -07 000000458 INF: FPGA: Recv ZSGSRD 29191
17-03-17 21:30:13.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.808 -07 000000512 INF: FPGA: Recv ZSGSRD 29188
17-03-17 21:30:13.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.818 -07 000000012 INF: FPGA: Recv ZSGSRD 29186
17-03-17 21:30:13.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29186
17-03-17 21:30:13.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:30:13.838 -07 000000627 INF: FPGA: Recv ZSGSRD 29186
17-03-17 21:30:13.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:30:13.848 -07 000000626 INF: FPGA: Recv ZPIEZORD 24877
17-03-17 21:30:13.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:13.858 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.5 V.
17-03-17 21:30:13.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29188 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29188 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29185 (-127.0 uncal um), Max = 29191 (-127.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:30:13.858 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29188, posNoise = 3, negNoise = 3
17-03-17 21:30:13.858 -07 000000610 INF: Z Motor: After move to -0.127823, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:30:13.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:30:13.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:30:13.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:30:13.858 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:30:13.858 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:30:13.858 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:30:13.858 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:30:13.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:30:13.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:30:13.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:30:13.858 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:30:13.858 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:30:13.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:30:13.858 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:30:13.868 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:30:13.868 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:30:13.868 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:30:13.868 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:30:13.868 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:30:13.878 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:30:13.878 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:30:13.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 432 432 208 208 28100 150\n [Camera]
17-03-17 21:30:14.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:30:14.478 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.014009,
17-03-17 21:30:14.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 624
17-03-17 21:30:14.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 624
17-03-17 21:30:14.518 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:14.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 624
17-03-17 21:30:14.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 624
17-03-17 21:30:14.518 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:14.518 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:14.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:30:14.528 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:14.528 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:30:14.698 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28100 817
17-03-17 21:30:14.848 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:30:14.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:30:14.898 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:30:14.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:14.898 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:14.898 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:30:14.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:30:14.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:30:14.898 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:14.908 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:14.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:30:15.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1175
17-03-17 21:30:15.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1175
17-03-17 21:30:15.058 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:30:15.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1175
17-03-17 21:30:15.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1175
17-03-17 21:30:15.068 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:30:15.068 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:30:15.068 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:30:15.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:30:15.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:30:15.248 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1367
17-03-17 21:30:15.248 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:30:15.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 432 432 208 208 28100 150' command took 2 ms to send, 1368 ms to get response, and 1375 ms overall
17-03-17 21:30:15.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:30:15.468 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:30:15.468 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:15.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:30:15.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:30:15.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:30:15.478 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:15.478 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:30:15.478 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:30:15.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:30:15.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 21:30:15.518 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 21:30:15.518 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:30:15.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:30:15.688 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 21:30:15.688 -07 000000610 INF: Imaging Cycle 51: ScanTilesCommand Cycle 51 time end. Duration was 160076 ms.
17-03-17 21:30:15.688 -07 000000610 INF: =================== Cycle #51 ===================
17-03-17 21:30:15.688 -07 000000610 INF: ===================  ===================
17-03-17 21:30:15.688 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:30:15.698 -07 000000476 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 21:30:15.698 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:30:15.698 -07 000000547 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 21:30:15.698 -07 000000547 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 51, FrontChillerTemperature: 4.014009, FrontChillerHeatSinkTemperature: 0.311751, AmbientTemperature: 18.99376, FlowCellCompartmentTemperature: 21.98672, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.72911, GreenLEDSensorTemperature: 26.57678, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-17 21:30:15.728 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.