17-03-17 21:30:15.788 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:15.788 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:30:15.788 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 21:30:15.788 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:15.788 -07 000000438 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:30:15.798 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:30:15.798 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:15.798 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:30:15.798 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:30:15.798 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:30:15.908 -07 000000012 INF: FPGA: Recv YMVTO 154377 872
17-03-17 21:30:15.908 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:30:15.908 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 21:30:15.908 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 21:30:15.908 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-17 21:30:16.878 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:16.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=763, R2=785, Total=1548. Warn if over 250 bubbles per interval.
17-03-17 21:30:18.908 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:30:18.908 -07 000000459 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:30:18.918 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:30:18.918 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:30:18.938 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:30:18.938 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:30:18.938 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3148 ms
17-03-17 21:30:18.938 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 60° ===================
17-03-17 21:30:18.938 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:30:18.938 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:30:18.948 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:30:18.948 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:30:18.948 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:30:18.948 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 21:30:18.958 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:30:18.958 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 60° ===================
17-03-17 21:30:18.958 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:18.958 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:30:18.958 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:18.978 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:30:18.978 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:30:18.978 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:30:19.278 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:30:19.298 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:30:19.298 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:30:19.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:19.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:30:19.368 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:30:19.468 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:19.468 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:30:19.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:19.498 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:30:19.498 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:30:19.498 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:30:19.628 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:30:19.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:19.848 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.993549,
17-03-17 21:30:21.878 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 10
17-03-17 21:30:21.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=10, R2=3, Total=13. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=773, R2=788, Total=1561. Warn if over 250 bubbles per interval.
17-03-17 21:30:22.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:22.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:23.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:23.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:23.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:23.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:23.728 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:30:23.728 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:23.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:23.888 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:30:23.888 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:30:24.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:24.048 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:30:24.048 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:30:24.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:30:24.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:30:24.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:24.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:24.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:24.668 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:30:24.668 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:25.228 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471,
17-03-17 21:30:25.888 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:30:25.888 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:30:25.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:25.908 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:30:25.908 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:30:25.908 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:30:26.048 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:30:26.068 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:30:26.068 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:30:26.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:26.138 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:30:26.138 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:30:26.238 -07 000000610 INF: =================== Cycle #52, Pumping Reagent CMS (4) ===================
17-03-17 21:30:26.238 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:30:26.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:26.268 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:30:26.268 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:30:26.268 -07 000000610 INF: =================== Cycle #52, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:30:26.398 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:30:26.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:26.888 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 3
17-03-17 21:30:26.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=3, R2=10, Total=13. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=776, R2=798, Total=1574. Warn if over 250 bubbles per interval.
17-03-17 21:30:27.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:27.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:28.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:28.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:28.358 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:30:28.358 -07 000000610 INF: =================== Cycle #52, Pumping Reagent CMS (4) ===================
17-03-17 21:30:28.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:28.518 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:30:28.518 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:30:28.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:28.678 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:30:28.678 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:30:28.678 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:30:28.808 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:30:28.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:29.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:29.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:29.298 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:30:29.298 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:30.518 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:30:30.518 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:30:30.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:30.538 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:30:30.538 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:30:30.538 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:30:30.588 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.008536,
17-03-17 21:30:30.688 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:30:30.708 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:30:30.708 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:30:30.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:30.778 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:30:30.778 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:30:30.878 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:30.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:30:30.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:30.908 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:30:30.908 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:30:30.908 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:30:31.038 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:30:31.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:31.888 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 21:30:31.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=800, Total=1579. Warn if over 250 bubbles per interval.
17-03-17 21:30:31.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:31.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:31.978 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:30:31.978 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:32.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:32.138 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:30:32.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:30:32.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:32.298 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:30:32.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:30:32.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:30:32.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:30:32.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:32.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:32.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:32.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:30:32.918 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:32.918 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:30:32.918 -07 000000512 INF: WaitCommand(10000) start
17-03-17 21:30:32.918 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:30:34.138 -07 000000501 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:30:34.138 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 21:30:34.168 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:30:34.168 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:30:34.298 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:30:34.338 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:35.868 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:35.898 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:35.958 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.007176,
17-03-17 21:30:36.318 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:36.348 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:36.348 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:30:36.348 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:30:36.348 -07 000000501 INF: ===================  ===================
17-03-17 21:30:36.888 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:30:36.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:30:41.328 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.994908,
17-03-17 21:30:41.888 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:41.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:30:42.928 -07 000000512 INF: WaitCommand(10000) end
17-03-17 21:30:42.928 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:42.928 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:30:42.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:42.968 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:30:42.968 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:30:42.968 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:30:43.098 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:30:43.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:46.698 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.001704,
17-03-17 21:30:46.888 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:46.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:30:49.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:49.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:49.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:49.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:50.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:50.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:50.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:50.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:51.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:51.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:51.098 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:30:51.098 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:51.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:51.258 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:30:51.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:30:51.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:51.418 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:30:51.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:30:51.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:30:51.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:30:51.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:51.888 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:51.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:30:52.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:52.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:52.038 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:30:52.038 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:52.078 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.997626,
17-03-17 21:30:53.258 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:30:53.258 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:30:53.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:53.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:30:53.278 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:30:53.278 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:30:53.488 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:30:53.508 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:30:53.508 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:30:53.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:53.578 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:30:53.578 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:30:53.678 -07 000000610 INF: =================== Cycle #52, Pumping Reagent IMT (1) ===================
17-03-17 21:30:53.678 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:30:53.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:53.718 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:30:53.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:30:53.718 -07 000000610 INF: =================== Cycle #52, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:30:53.848 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:30:53.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:55.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:55.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:55.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:55.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:55.808 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:30:55.808 -07 000000610 INF: =================== Cycle #52, Pumping Reagent IMT (1) ===================
17-03-17 21:30:55.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:55.968 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:30:55.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:30:56.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:56.128 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:30:56.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:30:56.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:30:56.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:30:56.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:56.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:56.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:56.748 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:30:56.748 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:30:56.888 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:30:56.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:30:57.438 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.0344,
17-03-17 21:30:57.968 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:30:57.968 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:30:57.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:57.988 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:30:57.988 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:30:57.988 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:30:58.218 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:30:58.238 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:30:58.238 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:30:58.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:30:58.308 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:30:58.308 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:30:58.408 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:58.408 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:30:58.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:58.438 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:30:58.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:30:58.438 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:30:58.568 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:30:58.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:30:59.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:30:59.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:30:59.508 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:30:59.508 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:30:59.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:59.668 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:30:59.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:30:59.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:30:59.828 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:30:59.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:30:59.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:30:59.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:30:59.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:31:00.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:31:00.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:31:00.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:31:00.448 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:31:00.448 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 65° ===================
17-03-17 21:31:00.448 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:31:00.448 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:31:00.448 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:31:00.458 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:31:00.458 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:31:00.458 -07 000000415 INF: FPGA: Recv TEC2EN 
17-03-17 21:31:00.468 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:31:00.468 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 65° ===================
17-03-17 21:31:00.468 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:31:00.468 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:31:01.888 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:01.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:02.808 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.012614,
17-03-17 21:31:06.888 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:06.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:08.178 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.014009,
17-03-17 21:31:11.888 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:11.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:13.548 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.000345,
17-03-17 21:31:16.888 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:16.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:18.918 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.997626,
17-03-17 21:31:21.888 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:21.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:24.288 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471,
17-03-17 21:31:26.888 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:26.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:29.658 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.009895,
17-03-17 21:31:30.478 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:31:30.478 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:31:30.478 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:31:30.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:31:30.608 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:31:30.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:31:30.608 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:31:30.738 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:31:30.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:31:31.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:31:31.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:31:31.348 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:31:31.348 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:31:31.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:31:31.508 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:31:31.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:31:31.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:31:31.668 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:31:31.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:31:31.668 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:31:31.798 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:31:31.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:31:31.888 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:31.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:32.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:31:32.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:31:32.288 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:31:32.288 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:31:32.288 -07 000000458 INF: WaitCommand(30000) start
17-03-17 21:31:32.288 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:31:32.288 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:31:33.508 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:31:33.508 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 21:31:33.538 -07 000000501 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:31:33.538 -07 000000501 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:31:33.668 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:31:33.708 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:31:35.028 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.981281,
17-03-17 21:31:36.048 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 21:31:36.078 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:31:36.498 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 21:31:36.528 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:31:36.528 -07 000000501 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:31:36.528 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:31:36.528 -07 000000501 INF: ===================  ===================
17-03-17 21:31:36.888 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:36.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:40.398 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.978563,
17-03-17 21:31:41.888 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:41.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:45.768 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.94992,
17-03-17 21:31:46.888 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:46.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:51.138 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.96762,
17-03-17 21:31:51.888 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:51.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:31:56.508 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.996267,
17-03-17 21:31:56.888 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:31:56.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:32:01.878 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.001704,
17-03-17 21:32:01.888 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:01.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=779, R2=801, Total=1580. Warn if over 250 bubbles per interval.
17-03-17 21:32:02.298 -07 000000458 INF: WaitCommand(30000) end
17-03-17 21:32:02.298 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 22° ===================
17-03-17 21:32:02.298 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:32:02.298 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:32:02.308 -07 000000547 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:32:02.308 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:32:02.308 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:32:02.308 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 21:32:02.318 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:02.318 -07 000000610 INF: =================== Cycle #52, Flow Cell Temp 22° ===================
17-03-17 21:32:02.318 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:32:02.318 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:32:02.318 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:32:02.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:02.358 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:32:02.358 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:32:02.358 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:32:02.488 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:32:02.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:05.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:05.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:06.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:06.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:06.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:06.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:06.588 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:32:06.588 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:32:06.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:06.748 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:32:06.748 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:32:06.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:06.888 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 6
17-03-17 21:32:06.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=6, R2=5, Total=11. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:06.908 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:32:06.908 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:32:06.908 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:32:07.038 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:32:07.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:07.248 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.99219,
17-03-17 21:32:07.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:07.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:07.528 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:32:07.528 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:32:08.748 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:32:08.748 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:32:08.748 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:32:08.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:32:08.768 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:32:08.768 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:32:08.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:32:08.938 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:32:08.938 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:32:08.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:32:09.008 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:32:09.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:32:09.108 -07 000000610 INF: =================== Cycle #52, Pumping Reagent USM (2) ===================
17-03-17 21:32:09.108 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:32:09.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:09.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:32:09.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:32:09.138 -07 000000610 INF: =================== Cycle #52, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:32:09.268 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:32:09.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:10.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:10.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:11.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:11.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:11.228 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:32:11.228 -07 000000610 INF: =================== Cycle #52, Pumping Reagent USM (2) ===================
17-03-17 21:32:11.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:11.388 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:32:11.388 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:32:11.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:11.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:32:11.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:32:11.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:32:11.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:32:11.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:11.888 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:11.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:12.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:12.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:12.168 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-17 21:32:12.168 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:32:12.618 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.008536,
17-03-17 21:32:13.388 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:32:13.388 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:32:13.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:32:13.408 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:32:13.408 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:32:13.408 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:32:13.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:32:13.578 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:32:13.578 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:32:13.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:32:13.648 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:32:13.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:32:13.748 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:32:13.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:32:13.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:13.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:32:13.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:32:13.778 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:32:13.908 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:32:13.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:14.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:14.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:14.848 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:32:14.848 -07 000000610 INF: =================== Cycle #52, Pumping Reagent PR2 (3) ===================
17-03-17 21:32:14.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:15.008 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:32:15.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:32:15.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:32:15.168 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:32:15.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:32:15.168 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:32:15.298 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:32:15.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:15.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:15.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:15.788 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:32:15.788 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:32:15.788 -07 000000627 INF: WaitCommand(10000) start
17-03-17 21:32:15.788 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:32:15.788 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:32:16.888 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:16.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:17.008 -07 000000512 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:32:17.008 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-17 21:32:17.038 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:32:17.038 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:32:17.168 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:32:17.208 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:17.988 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.979922,
17-03-17 21:32:18.738 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:18.768 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:32:19.188 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-17 21:32:19.218 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:32:19.218 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:32:19.218 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:32:19.218 -07 000000512 INF: ===================  ===================
17-03-17 21:32:21.888 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:21.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:23.358 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.014009,
17-03-17 21:32:25.798 -07 000000627 INF: WaitCommand(10000) end
17-03-17 21:32:25.798 -07 000000610 INF: =================== Cycle #52, Imaging ===================
17-03-17 21:32:25.798 -07 000000610 INF: Imaging Cycle 52: ScanTilesCommand Cycle 52 time start.
17-03-17 21:32:25.798 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:32:25.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:32:25.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:32:25.828 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:32:25.828 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:32:26.128 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:32:26.148 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:32:26.148 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:32:26.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:32:26.218 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:32:26.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:26.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:26.218 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:32:26.218 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:26.218 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:32:26.218 -07 000000547 INF: FPGA: Recv EXLED1ON 
17-03-17 21:32:26.228 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:32:26.228 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:32:26.228 -07 000000429 INF: FPGA: Recv EXLED1ADCR 23206
17-03-17 21:32:26.238 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:26.238 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23206 --> 7.5 mW (old method), or 205.7 mW (new method). Difference = 198.2 mW
17-03-17 21:32:26.238 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:32:26.238 -07 000000576 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:32:26.248 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:26.248 -07 000000501 INF: RedLED: LED was on for 20 ms
17-03-17 21:32:26.248 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 21:32:26.248 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:32:26.248 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:26.248 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:32:26.248 -07 000000438 INF: FPGA: Recv EXLED2ON 
17-03-17 21:32:26.258 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:32:26.258 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:32:26.258 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 21:32:26.268 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:26.268 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 21:32:26.268 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:32:26.268 -07 000000459 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:32:26.278 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:26.278 -07 000000501 INF: GreenLED: LED was on for 19 ms
17-03-17 21:32:26.278 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:32:26.278 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:32:26.278 -07 000000458 INF: FPGA: Recv EMCUR 
17-03-17 21:32:26.288 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:26.288 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:32:26.788 -07 000000501 INF: FPGA: Recv EMOUT
17-03-17 21:32:26.788 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:32:26.788 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:32:26.788 -07 000000512 INF: FPGA: Recv EMCUR 
17-03-17 21:32:26.798 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:26.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:26.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127833256004854. ------
17-03-17 21:32:26.798 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:26.798 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17960 mm
17-03-17 21:32:26.798 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:26.798 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:32:26.798 -07 000000626 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 21:32:26.798 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 39234, sync = True, waitForSettling = False)
17-03-17 21:32:26.798 -07 000000382 INF: Z Motor: Moving to -0.179602 mm, started at -0.127833 mm, distance = -51.77 um
17-03-17 21:32:26.798 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:26.808 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:26.808 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:26.808 -07 000000476 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:32:26.818 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:32:26.818 -07 000000626 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:26.818 -07 000000626 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:32:26.818 -07 000000626 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:32:26.818 -07 000000382 INF: FPGA: Xmit ZDACW 39234\n [Z Motor]
17-03-17 21:32:26.818 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:32:26.828 -07 000000382 INF: FPGA: 'ZDACW 39234' command took 2 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:32:26.828 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:26.838 -07 000000626 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:32:26.848 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:26.848 -07 000000512 INF: FPGA: Recv ZDACR 39234
17-03-17 21:32:26.858 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:32:26.858 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:32:26.888 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:26.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:27.028 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:27.028 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:32:28.518 -07 000000608 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 21:32:28.518 -07 000000626 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 21:32:28.518 -07 000000626 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:32:28.518 -07 000000626 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 21:32:28.518 -07 000000626 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 21:32:28.728 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.014009,
17-03-17 21:32:31.368 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:31.368 -07 000000501 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:32:31.378 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.378 -07 000000626 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:31.398 -07 000000626 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:31.398 -07 000000626 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:32:31.398 -07 000000626 INF: Y Motor: Moved to 59.9102 after 4596 ms
17-03-17 21:32:31.398 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179602 mm (DAC = 39234)
17-03-17 21:32:31.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.408 -07 000000429 INF: FPGA: Recv ZSGSRD 37253
17-03-17 21:32:31.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:32:31.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.408 -07 000000480 INF: FPGA: Recv ZSGSRD 37250
17-03-17 21:32:31.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.418 -07 000000627 INF: FPGA: Recv ZSGSRD 37245
17-03-17 21:32:31.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.428 -07 000000438 INF: FPGA: Recv ZSGSRD 37253
17-03-17 21:32:31.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.438 -07 000000547 INF: FPGA: Recv ZSGSRD 37242
17-03-17 21:32:31.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.448 -07 000000431 INF: FPGA: Recv ZSGSRD 37247
17-03-17 21:32:31.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.458 -07 000000476 INF: FPGA: Recv ZSGSRD 37252
17-03-17 21:32:31.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.468 -07 000000382 INF: FPGA: Recv ZSGSRD 37249
17-03-17 21:32:31.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.478 -07 000000512 INF: FPGA: Recv ZSGSRD 37251
17-03-17 21:32:31.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:31.488 -07 000000415 INF: FPGA: Recv ZSGSRD 37246
17-03-17 21:32:31.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:31.498 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:31.498 -07 000000576 INF: FPGA: Recv ZPIEZORD 33732
17-03-17 21:32:31.508 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:31.508 -07 000000458 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.987 V. Piezo Error = -7.8 V.
17-03-17 21:32:31.508 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37249 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37250 (-178.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37242 (-178.7 uncal um), Max = 37253 (-178.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:32:31.508 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37249, posNoise = 4, negNoise = 7
17-03-17 21:32:31.508 -07 000000458 INF: Z Motor: After move to -0.179602, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:31.508 -07 000000458 INF: Z Motor: Settle wait time = 4599 ms, measure time = 103 ms (allowed 150 ms), total time = 4702 ms
17-03-17 21:32:31.508 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:31.558 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 21:32:31.558 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:31.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:31.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:31.558 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:31.558 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:31.558 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:31.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:31.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:32:31.558 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:32:31.588 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:32:31.588 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:31.588 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:32:31.588 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:31.608 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:32:31.608 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 21:32:31.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:31.648 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:31.848 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:31.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:31.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:31.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:32:31.888 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:31.888 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:31.888 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:31.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:32:31.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:32:31.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:31.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:32:31.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:32:31.988 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:32.088 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:32.088 -07 000000475 INF: Image SNR check: start
17-03-17 21:32:32.088 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:32.098 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:32.098 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:32.098 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=61.98]
17-03-17 21:32:32.108 -07 000000475 INF: Autofocus start
17-03-17 21:32:32.108 -07 000000475 INF: MeasureProfile start
17-03-17 21:32:32.118 -07 000000475 INF: MeasureProfile done
17-03-17 21:32:32.118 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:32:32.118 -07 000000475 INF: Autofocus finished
17-03-17 21:32:32.298 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:32.298 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:32:32.298 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179618830079589. ----------
17-03-17 21:32:32.298 -07 000000610 INF: Cycle	52	Tile	1	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:32.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37731, sync = True, waitForSettling = True)
17-03-17 21:32:32.308 -07 000000610 INF: Z Motor: Moving to -0.172721 mm, started at -0.179619 mm, distance = 6.90 um
17-03-17 21:32:32.308 -07 000000610 INF: FPGA: Xmit ZDACW 37731\n [Z Motor]
17-03-17 21:32:32.308 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:32:32.318 -07 000000610 INF: FPGA: 'ZDACW 37731' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:32.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:32.318 -07 000000012 INF: FPGA: Recv ZDACR 37731
17-03-17 21:32:32.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.478 -07 000000438 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:32:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.488 -07 000000576 INF: FPGA: Recv ZSGSRD 36182
17-03-17 21:32:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.498 -07 000000424 INF: FPGA: Recv ZSGSRD 36174
17-03-17 21:32:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.508 -07 000000608 INF: FPGA: Recv ZSGSRD 36178
17-03-17 21:32:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36173
17-03-17 21:32:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36177
17-03-17 21:32:32.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.538 -07 000000475 INF: FPGA: Recv ZSGSRD 36177
17-03-17 21:32:32.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.548 -07 000000476 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:32:32.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.558 -07 000000608 INF: FPGA: Recv ZSGSRD 36171
17-03-17 21:32:32.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:32.568 -07 000000458 INF: FPGA: Recv ZSGSRD 36183
17-03-17 21:32:32.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:32.578 -07 000000627 INF: FPGA: Recv ZPIEZORD 32310
17-03-17 21:32:32.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:32.588 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.6 V.
17-03-17 21:32:32.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36177 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36176 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36171 (-171.8 uncal um), Max = 36183 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:32:32.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36177, posNoise = 6, negNoise = 6
17-03-17 21:32:32.588 -07 000000610 INF: Z Motor: After move to -0.172721, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:32.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:32:32.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:32.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:32.588 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:32.588 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:32.588 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:32.588 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:32.588 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:32.588 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:32.588 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:32.588 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:32.588 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:32:32.588 -07 000000458 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:32:32.598 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:32.598 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:32.608 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:32:32.608 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:32:32.618 -07 000000458 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:32:32.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:32.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:32:32.618 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:32.628 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:32:32.628 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 21:32:32.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37907 150\n [Camera]
17-03-17 21:32:32.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:33.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629
17-03-17 21:32:33.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629
17-03-17 21:32:33.268 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:33.268 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629
17-03-17 21:32:33.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629
17-03-17 21:32:33.268 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:33.268 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:33.268 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:32:33.268 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:33.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:32:33.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37907 819
17-03-17 21:32:33.608 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:33.668 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:32:33.668 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:32:33.668 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:33.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:32:33.668 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:32:33.668 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:33.678 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:32:33.678 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:32:33.678 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:32:33.688 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:32:33.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:32:33.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:32:33.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:33.918 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:32:33.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:32:33.928 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:33.928 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:33.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:32:33.928 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:33.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:32:34.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:32:34.008 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:34.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37907 150' command took 2 ms to send, 1369 ms to get response, and 1381 ms overall
17-03-17 21:32:34.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:34.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172732074663621. ------
17-03-17 21:32:34.018 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:34.018 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17904 mm
17-03-17 21:32:34.018 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:34.018 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:32:34.018 -07 000000459 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:32:34.018 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 39110, sync = True, waitForSettling = False)
17-03-17 21:32:34.018 -07 000000458 INF: Z Motor: Moving to -0.179034 mm, started at -0.172732 mm, distance = -6.30 um
17-03-17 21:32:34.018 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:34.028 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:34.028 -07 000000458 INF: FPGA: Xmit ZDACW 39110\n [Z Motor]
17-03-17 21:32:34.028 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:32:34.038 -07 000000458 INF: FPGA: 'ZDACW 39110' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:32:34.038 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:34.048 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:34.048 -07 000000480 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:32:34.058 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:34.058 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:32:34.058 -07 000000459 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:34.058 -07 000000459 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:34.058 -07 000000459 INF: Y Motor: Moving 1332 steps2
17-03-17 21:32:34.058 -07 000000415 INF: FPGA: Recv ZDACR 39110
17-03-17 21:32:34.068 -07 000000458 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:34.068 -07 000000458 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:32:34.068 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:34.098 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.999021,
17-03-17 21:32:34.238 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:34.238 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:32:34.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:32:34.318 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:32:34.318 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:34.328 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:34.328 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 21:32:34.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:32:34.328 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:32:34.328 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:34.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:34.338 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:32:34.438 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:32:34.438 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:32:34.478 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:34.478 -07 000000480 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:32:34.488 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:34.488 -07 000000459 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:34.488 -07 000000459 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:32:34.488 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.832 mm, average velocity = 2.162 mm/sec
17-03-17 21:32:35.438 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:35.438 -07 000000431 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:32:35.448 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.448 -07 000000459 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:35.468 -07 000000459 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:35.468 -07 000000459 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:32:35.468 -07 000000459 INF: Y Motor: Moved to 60.7324 after 1445 ms (table move)
17-03-17 21:32:35.468 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179034 mm (DAC = 39110)
17-03-17 21:32:35.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.478 -07 000000512 INF: FPGA: Recv ZSGSRD 37161
17-03-17 21:32:35.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:32:35.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.478 -07 000000431 INF: FPGA: Recv ZSGSRD 37163
17-03-17 21:32:35.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:35.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.488 -07 000000458 INF: FPGA: Recv ZSGSRD 37157
17-03-17 21:32:35.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.498 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.498 -07 000000626 INF: FPGA: Recv ZSGSRD 37165
17-03-17 21:32:35.508 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.508 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.508 -07 000000576 INF: FPGA: Recv ZSGSRD 37157
17-03-17 21:32:35.518 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.518 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.518 -07 000000480 INF: FPGA: Recv ZSGSRD 37154
17-03-17 21:32:35.528 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.528 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.528 -07 000000476 INF: FPGA: Recv ZSGSRD 37153
17-03-17 21:32:35.538 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.538 -07 000000415 INF: FPGA: Recv ZSGSRD 37154
17-03-17 21:32:35.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.548 -07 000000012 INF: FPGA: Recv ZSGSRD 37158
17-03-17 21:32:35.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:35.558 -07 000000501 INF: FPGA: Recv ZSGSRD 37168
17-03-17 21:32:35.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.568 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:35.568 -07 000000424 INF: FPGA: Recv ZPIEZORD 33615
17-03-17 21:32:35.578 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:35.578 -07 000000627 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.968 V. Piezo Error = -7.9 V.
17-03-17 21:32:35.578 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37159 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37158 (-178.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37153 (-178.1 uncal um), Max = 37168 (-178.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:32:35.578 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37159, posNoise = 9, negNoise = 6
17-03-17 21:32:35.578 -07 000000627 INF: Z Motor: After move to -0.179034, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:35.578 -07 000000627 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:32:35.578 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:35.628 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:32:35.628 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:35.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:35.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:35.628 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:35.628 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:35.628 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:35.628 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:35.628 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:35.628 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:35.638 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:32:35.638 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:35.648 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:32:35.648 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:32:35.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:35.688 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:35.888 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:35.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:35.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:35.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:32:35.928 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:35.928 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:35.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:32:36.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:32:36.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:36.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:32:36.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 21:32:36.128 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:36.128 -07 000000382 INF: Autofocus start
17-03-17 21:32:36.128 -07 000000382 INF: MeasureProfile start
17-03-17 21:32:36.128 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:36.138 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:36.138 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:36.138 -07 000000382 INF: MeasureProfile done
17-03-17 21:32:36.138 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:32:36.138 -07 000000382 INF: Autofocus finished
17-03-17 21:32:36.338 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:36.338 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:32:36.338 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.17904065098683. ----------
17-03-17 21:32:36.348 -07 000000610 INF: Cycle	52	Tile	2	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:36.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37607, sync = True, waitForSettling = True)
17-03-17 21:32:36.348 -07 000000610 INF: Z Motor: Moving to -0.172154 mm, started at -0.179041 mm, distance = 6.89 um
17-03-17 21:32:36.348 -07 000000610 INF: FPGA: Xmit ZDACW 37607\n [Z Motor]
17-03-17 21:32:36.348 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:32:36.358 -07 000000610 INF: FPGA: 'ZDACW 37607' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:32:36.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:36.358 -07 000000480 INF: FPGA: Recv ZDACR 37607
17-03-17 21:32:36.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:36.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.518 -07 000000476 INF: FPGA: Recv ZSGSRD 36093
17-03-17 21:32:36.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:36.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.528 -07 000000576 INF: FPGA: Recv ZSGSRD 36094
17-03-17 21:32:36.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.538 -07 000000438 INF: FPGA: Recv ZSGSRD 36089
17-03-17 21:32:36.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.548 -07 000000458 INF: FPGA: Recv ZSGSRD 36089
17-03-17 21:32:36.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.558 -07 000000424 INF: FPGA: Recv ZSGSRD 36086
17-03-17 21:32:36.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36093
17-03-17 21:32:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.578 -07 000000576 INF: FPGA: Recv ZSGSRD 36092
17-03-17 21:32:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.588 -07 000000627 INF: FPGA: Recv ZSGSRD 36084
17-03-17 21:32:36.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.598 -07 000000382 INF: FPGA: Recv ZSGSRD 36091
17-03-17 21:32:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:36.608 -07 000000480 INF: FPGA: Recv ZSGSRD 36098
17-03-17 21:32:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:36.618 -07 000000429 INF: FPGA: Recv ZPIEZORD 32182
17-03-17 21:32:36.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:36.628 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.6 V.
17-03-17 21:32:36.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36091 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36092 (-171.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36098 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:32:36.628 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36091, posNoise = 7, negNoise = 7
17-03-17 21:32:36.628 -07 000000610 INF: Z Motor: After move to -0.172154, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:36.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:32:36.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:36.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:36.628 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:36.628 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:36.628 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:36.628 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:36.628 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:36.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:36.628 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:32:36.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:36.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:36.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:36.638 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:32:36.638 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:36.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:36.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:36.648 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:32:36.648 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:32:36.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:32:36.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:32:36.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37784 150\n [Camera]
17-03-17 21:32:36.858 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:36.888 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:36.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:37.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:32:37.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:32:37.288 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:37.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:32:37.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:32:37.288 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:37.288 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:37.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:32:37.288 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:37.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2151893096, 0x0, 391868352) start.
17-03-17 21:32:37.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37784 819
17-03-17 21:32:37.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:37.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2151893096, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:32:37.688 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:32:37.688 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:37.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:32:37.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:32:37.688 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:37.698 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:37.698 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:32:37.698 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:37.698 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:32:37.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:32:37.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:32:37.838 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:37.838 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:37.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:32:37.838 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:32:37.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:32:37.848 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:37.848 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:37.848 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:32:38.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:32:38.028 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:38.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37784 150' command took 2 ms to send, 1368 ms to get response, and 1377 ms overall
17-03-17 21:32:38.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:38.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.17217959241943. ------
17-03-17 21:32:38.148 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:38.148 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17841 mm
17-03-17 21:32:38.148 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:38.148 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:38.148 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:32:38.148 -07 000000569 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:32:38.148 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38974, sync = True, waitForSettling = False)
17-03-17 21:32:38.148 -07 000000475 INF: Z Motor: Moving to -0.178412 mm, started at -0.172180 mm, distance = -6.23 um
17-03-17 21:32:38.158 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:38.158 -07 000000475 INF: FPGA: Xmit ZDACW 38974\n [Z Motor]
17-03-17 21:32:38.158 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:32:38.168 -07 000000475 INF: FPGA: 'ZDACW 38974' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:32:38.168 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:38.168 -07 000000415 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:32:38.178 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:32:38.178 -07 000000569 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:38.178 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:38.178 -07 000000569 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:38.178 -07 000000569 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:32:38.188 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:38.188 -07 000000512 INF: FPGA: Recv ZDACR 38974
17-03-17 21:32:38.198 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:38.198 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:38.198 -07 000000475 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:32:38.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:32:38.228 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:32:38.228 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:38.228 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:38.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:32:38.238 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:32:38.238 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:38.238 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:38.238 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:32:38.238 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:32:38.378 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:38.378 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:32:38.568 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:32:38.568 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:32:38.608 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:38.608 -07 000000475 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:32:38.618 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:38.618 -07 000000569 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:38.618 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:32:38.618 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 21:32:39.468 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.994908,
17-03-17 21:32:39.568 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:39.568 -07 000000438 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:32:39.578 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:39.578 -07 000000569 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:39.598 -07 000000569 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:39.598 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:32:39.598 -07 000000569 INF: Y Motor: Moved to 61.5635 after 1446 ms (table move)
17-03-17 21:32:39.598 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178412 mm (DAC = 38974)
17-03-17 21:32:39.598 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.608 -07 000000415 INF: FPGA: Recv ZSGSRD 37068
17-03-17 21:32:39.608 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:32:39.608 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.608 -07 000000424 INF: FPGA: Recv ZSGSRD 37061
17-03-17 21:32:39.618 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.618 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.618 -07 000000458 INF: FPGA: Recv ZSGSRD 37058
17-03-17 21:32:39.628 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.628 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.628 -07 000000382 INF: FPGA: Recv ZSGSRD 37062
17-03-17 21:32:39.638 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.638 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.638 -07 000000608 INF: FPGA: Recv ZSGSRD 37069
17-03-17 21:32:39.648 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.648 -07 000000431 INF: FPGA: Recv ZSGSRD 37068
17-03-17 21:32:39.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.658 -07 000000459 INF: FPGA: Recv ZSGSRD 37064
17-03-17 21:32:39.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.668 -07 000000458 INF: FPGA: Recv ZSGSRD 37068
17-03-17 21:32:39.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.678 -07 000000501 INF: FPGA: Recv ZSGSRD 37061
17-03-17 21:32:39.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.688 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:39.688 -07 000000576 INF: FPGA: Recv ZSGSRD 37056
17-03-17 21:32:39.698 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.698 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:39.698 -07 000000475 INF: FPGA: Recv ZPIEZORD 33498
17-03-17 21:32:39.708 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:39.708 -07 000000476 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -7.9 V.
17-03-17 21:32:39.708 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37064 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37063 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37056 (-177.5 uncal um), Max = 37069 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:32:39.708 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37064, posNoise = 5, negNoise = 8
17-03-17 21:32:39.708 -07 000000476 INF: Z Motor: After move to -0.178412, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:39.708 -07 000000476 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:32:39.708 -07 000000476 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:39.758 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:32:39.758 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:39.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:39.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:39.758 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:39.758 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:39.758 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:39.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:39.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:39.758 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:39.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:32:39.768 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:39.778 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:32:39.778 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:32:39.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:39.828 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:40.028 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:40.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:40.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:40.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:32:40.068 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:40.068 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:40.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 277 ms to get response, and 293 ms overall
17-03-17 21:32:40.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:32:40.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:40.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:32:40.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:32:40.168 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:40.168 -07 000000569 INF: Autofocus start
17-03-17 21:32:40.168 -07 000000569 INF: MeasureProfile start
17-03-17 21:32:40.168 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:40.178 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:40.178 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:40.188 -07 000000569 INF: MeasureProfile done
17-03-17 21:32:40.188 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:32:40.188 -07 000000569 INF: Autofocus finished
17-03-17 21:32:40.378 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:40.378 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:32:40.378 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178430350833363. ----------
17-03-17 21:32:40.378 -07 000000610 INF: Cycle	52	Tile	3	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:40.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37507, sync = True, waitForSettling = True)
17-03-17 21:32:40.388 -07 000000610 INF: Z Motor: Moving to -0.171696 mm, started at -0.178430 mm, distance = 6.73 um
17-03-17 21:32:40.388 -07 000000610 INF: FPGA: Xmit ZDACW 37507\n [Z Motor]
17-03-17 21:32:40.388 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:32:40.398 -07 000000610 INF: FPGA: 'ZDACW 37507' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:40.398 -07 000000626 INF: FPGA: Recv ZDACR 37507
17-03-17 21:32:40.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.558 -07 000000627 INF: FPGA: Recv ZSGSRD 36015
17-03-17 21:32:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.568 -07 000000431 INF: FPGA: Recv ZSGSRD 36012
17-03-17 21:32:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.578 -07 000000480 INF: FPGA: Recv ZSGSRD 36019
17-03-17 21:32:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.588 -07 000000547 INF: FPGA: Recv ZSGSRD 36011
17-03-17 21:32:40.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.598 -07 000000429 INF: FPGA: Recv ZSGSRD 36020
17-03-17 21:32:40.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:32:40.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:32:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.618 -07 000000608 INF: FPGA: Recv ZSGSRD 36014
17-03-17 21:32:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.628 -07 000000382 INF: FPGA: Recv ZSGSRD 36017
17-03-17 21:32:40.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.638 -07 000000627 INF: FPGA: Recv ZSGSRD 36015
17-03-17 21:32:40.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:40.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36018
17-03-17 21:32:40.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:40.658 -07 000000475 INF: FPGA: Recv ZPIEZORD 32108
17-03-17 21:32:40.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:40.668 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -8.6 V.
17-03-17 21:32:40.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36016 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36016 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36011 (-170.8 uncal um), Max = 36022 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:32:40.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36016, posNoise = 6, negNoise = 5
17-03-17 21:32:40.668 -07 000000610 INF: Z Motor: After move to -0.171696, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:40.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:32:40.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:40.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:40.668 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:40.668 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:40.668 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:40.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:40.668 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:40.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:40.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:32:40.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:40.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:40.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:40.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:32:40.678 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:40.678 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:40.678 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:40.688 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:32:40.688 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:32:40.688 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:32:40.688 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:32:40.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37684 150\n [Camera]
17-03-17 21:32:40.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:41.318 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:32:41.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:32:41.328 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:41.328 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:32:41.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:32:41.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:41.328 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:41.328 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:32:41.328 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:41.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:32:41.518 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37684 819
17-03-17 21:32:41.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:41.708 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:32:41.708 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:32:41.708 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:41.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:32:41.708 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:32:41.708 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:41.708 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:32:41.708 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:32:41.708 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:41.718 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:32:41.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:32:41.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:32:41.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:41.878 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:32:41.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:32:41.878 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:41.878 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:41.878 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:32:41.878 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:41.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:32:41.888 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:41.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:42.068 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1374
17-03-17 21:32:42.068 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:42.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37684 150' command took 2 ms to send, 1376 ms to get response, and 1381 ms overall
17-03-17 21:32:42.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:42.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171697776508798. ------
17-03-17 21:32:42.078 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:42.078 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17809 mm
17-03-17 21:32:42.078 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:42.078 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:32:42.078 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:32:42.078 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:42.078 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38904, sync = True, waitForSettling = False)
17-03-17 21:32:42.078 -07 000000424 INF: Z Motor: Moving to -0.178091 mm, started at -0.171698 mm, distance = -6.39 um
17-03-17 21:32:42.088 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:42.088 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:32:42.088 -07 000000627 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:32:42.098 -07 000000424 INF: FPGA: Xmit ZDACW 38904\n [Z Motor]
17-03-17 21:32:42.098 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:32:42.098 -07 000000480 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:42.098 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:42.098 -07 000000480 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:32:42.098 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:32:42.108 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:42.108 -07 000000424 INF: FPGA: 'ZDACW 38904' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:32:42.118 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:42.128 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:42.128 -07 000000576 INF: FPGA: Recv ZDACR 38904
17-03-17 21:32:42.138 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:42.138 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:32:42.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:32:42.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:32:42.268 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:42.268 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:42.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:32:42.268 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:32:42.268 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:42.278 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:32:42.278 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:32:42.278 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:32:42.308 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:42.308 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:32:42.488 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:32:42.488 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:32:42.528 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:42.528 -07 000000415 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:32:42.538 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:42.538 -07 000000480 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:42.538 -07 000000480 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:32:42.538 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:32:43.488 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:43.488 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:32:43.498 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:43.498 -07 000000480 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:43.528 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:43.528 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:32:43.528 -07 000000480 INF: Y Motor: Moved to 62.3950 after 1448 ms (table move)
17-03-17 21:32:43.528 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178091 mm (DAC = 38904)
17-03-17 21:32:43.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.538 -07 000000382 INF: FPGA: Recv ZSGSRD 37016
17-03-17 21:32:43.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:32:43.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.538 -07 000000459 INF: FPGA: Recv ZSGSRD 37010
17-03-17 21:32:43.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:32:43.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.548 -07 000000512 INF: FPGA: Recv ZSGSRD 37022
17-03-17 21:32:43.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.558 -07 000000382 INF: FPGA: Recv ZSGSRD 37016
17-03-17 21:32:43.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.568 -07 000000569 INF: FPGA: Recv ZSGSRD 37015
17-03-17 21:32:43.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.578 -07 000000627 INF: FPGA: Recv ZSGSRD 37012
17-03-17 21:32:43.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.588 -07 000000438 INF: FPGA: Recv ZSGSRD 37011
17-03-17 21:32:43.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.598 -07 000000459 INF: FPGA: Recv ZSGSRD 37010
17-03-17 21:32:43.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.608 -07 000000547 INF: FPGA: Recv ZSGSRD 37010
17-03-17 21:32:43.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:43.618 -07 000000424 INF: FPGA: Recv ZSGSRD 37017
17-03-17 21:32:43.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:43.628 -07 000000480 INF: FPGA: Recv ZPIEZORD 33431
17-03-17 21:32:43.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:43.638 -07 000000431 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.936 V. Piezo Error = -7.9 V.
17-03-17 21:32:43.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37014 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37014 (-177.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37010 (-177.2 uncal um), Max = 37022 (-177.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:32:43.638 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37014, posNoise = 8, negNoise = 4
17-03-17 21:32:43.638 -07 000000431 INF: Z Motor: After move to -0.178091, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:43.638 -07 000000431 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:32:43.638 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:43.688 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:32:43.688 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:43.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:43.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:43.688 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:43.688 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:43.688 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:43.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:43.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:43.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:43.698 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:43.698 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:43.708 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:32:43.708 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:32:43.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:43.758 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:43.958 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:43.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:43.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:43.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:32:43.998 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:43.998 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:43.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 21:32:44.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:32:44.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:44.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:32:44.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:32:44.098 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:44.098 -07 000000626 INF: Autofocus start
17-03-17 21:32:44.098 -07 000000626 INF: MeasureProfile start
17-03-17 21:32:44.098 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:44.108 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:44.108 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:44.108 -07 000000626 INF: MeasureProfile done
17-03-17 21:32:44.108 -07 000000626 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:32:44.108 -07 000000626 INF: Autofocus finished
17-03-17 21:32:44.308 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:44.308 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:32:44.308 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178109140226275. ----------
17-03-17 21:32:44.318 -07 000000610 INF: Cycle	52	Tile	4	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:44.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37384, sync = True, waitForSettling = True)
17-03-17 21:32:44.318 -07 000000610 INF: Z Motor: Moving to -0.171133 mm, started at -0.178109 mm, distance = 6.98 um
17-03-17 21:32:44.318 -07 000000610 INF: FPGA: Xmit ZDACW 37384\n [Z Motor]
17-03-17 21:32:44.318 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:32:44.328 -07 000000610 INF: FPGA: 'ZDACW 37384' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:32:44.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:44.328 -07 000000547 INF: FPGA: Recv ZDACR 37384
17-03-17 21:32:44.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35929
17-03-17 21:32:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.498 -07 000000480 INF: FPGA: Recv ZSGSRD 35935
17-03-17 21:32:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.508 -07 000000627 INF: FPGA: Recv ZSGSRD 35928
17-03-17 21:32:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35937
17-03-17 21:32:44.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:32:44.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.538 -07 000000431 INF: FPGA: Recv ZSGSRD 35934
17-03-17 21:32:44.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.548 -07 000000627 INF: FPGA: Recv ZSGSRD 35926
17-03-17 21:32:44.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.558 -07 000000476 INF: FPGA: Recv ZSGSRD 35928
17-03-17 21:32:44.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.568 -07 000000608 INF: FPGA: Recv ZSGSRD 35929
17-03-17 21:32:44.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.578 -07 000000512 INF: FPGA: Recv ZSGSRD 35932
17-03-17 21:32:44.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:44.588 -07 000000431 INF: FPGA: Recv ZSGSRD 35933
17-03-17 21:32:44.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:44.598 -07 000000382 INF: FPGA: Recv ZPIEZORD 32004
17-03-17 21:32:44.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:44.608 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -8.7 V.
17-03-17 21:32:44.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35931 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35930 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35926 (-170.2 uncal um), Max = 35937 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:32:44.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35931, posNoise = 6, negNoise = 5
17-03-17 21:32:44.608 -07 000000610 INF: Z Motor: After move to -0.171133, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:44.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:32:44.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:44.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:44.608 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:44.608 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:44.608 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:44.608 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:44.608 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:44.608 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:44.608 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:32:44.608 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:44.608 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:32:44.608 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:44.618 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:44.618 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:44.618 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:32:44.618 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:44.628 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:32:44.628 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:32:44.628 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:32:44.628 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:32:44.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37560 150\n [Camera]
17-03-17 21:32:44.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:44.838 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.993549,
17-03-17 21:32:45.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:32:45.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:32:45.258 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:45.258 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:45.258 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:32:45.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:32:45.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:32:45.268 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:45.268 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:45.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:32:45.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37560 819
17-03-17 21:32:45.608 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:45.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:32:45.638 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:32:45.638 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:45.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:32:45.648 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:32:45.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:45.648 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:45.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:45.648 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:32:45.658 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:32:45.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1181
17-03-17 21:32:45.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1181
17-03-17 21:32:45.818 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:45.818 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:45.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:32:45.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1181
17-03-17 21:32:45.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1181
17-03-17 21:32:45.818 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:45.818 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:45.818 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:32:46.008 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:32:46.008 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:46.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37560 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:32:46.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:46.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171151718476748. ------
17-03-17 21:32:46.128 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17770 mm
17-03-17 21:32:46.128 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:46.128 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:46.128 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:32:46.128 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:32:46.128 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38818, sync = True, waitForSettling = False)
17-03-17 21:32:46.138 -07 000000480 INF: Z Motor: Moving to -0.177697 mm, started at -0.171152 mm, distance = -6.55 um
17-03-17 21:32:46.138 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:46.138 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:46.138 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:32:46.138 -07 000000431 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:32:46.148 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:46.148 -07 000000608 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:46.148 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:46.148 -07 000000608 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:32:46.148 -07 000000480 INF: FPGA: Xmit ZDACW 38818\n [Z Motor]
17-03-17 21:32:46.148 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:32:46.158 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:46.158 -07 000000480 INF: FPGA: 'ZDACW 38818' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:32:46.168 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:46.178 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:46.178 -07 000000576 INF: FPGA: Recv ZDACR 38818
17-03-17 21:32:46.188 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:46.188 -07 000000480 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:32:46.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:32:46.208 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:32:46.208 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:46.208 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:32:46.208 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:32:46.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:46.218 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:46.218 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:32:46.218 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:32:46.218 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:32:46.358 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:46.358 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:32:46.548 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:32:46.548 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 21:32:46.578 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:46.588 -07 000000475 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:32:46.588 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:32:46.588 -07 000000608 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:46.588 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:32:46.588 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 21:32:46.888 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:46.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:47.538 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:47.538 -07 000000415 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:32:47.548 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:47.548 -07 000000608 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:47.568 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:47.568 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:32:47.568 -07 000000608 INF: Y Motor: Moved to 63.2236 after 1434 ms (table move)
17-03-17 21:32:47.568 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177697 mm (DAC = 38818)
17-03-17 21:32:47.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.578 -07 000000547 INF: FPGA: Recv ZSGSRD 36948
17-03-17 21:32:47.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:32:47.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.578 -07 000000415 INF: FPGA: Recv ZSGSRD 36959
17-03-17 21:32:47.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.588 -07 000000576 INF: FPGA: Recv ZSGSRD 36947
17-03-17 21:32:47.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.598 -07 000000475 INF: FPGA: Recv ZSGSRD 36958
17-03-17 21:32:47.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.608 -07 000000424 INF: FPGA: Recv ZSGSRD 36940
17-03-17 21:32:47.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.618 -07 000000547 INF: FPGA: Recv ZSGSRD 36950
17-03-17 21:32:47.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.628 -07 000000431 INF: FPGA: Recv ZSGSRD 36958
17-03-17 21:32:47.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.638 -07 000000569 INF: FPGA: Recv ZSGSRD 36953
17-03-17 21:32:47.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36959
17-03-17 21:32:47.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:47.658 -07 000000459 INF: FPGA: Recv ZSGSRD 36949
17-03-17 21:32:47.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.668 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:47.668 -07 000000512 INF: FPGA: Recv ZPIEZORD 33354
17-03-17 21:32:47.678 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:47.678 -07 000000626 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.0 V.
17-03-17 21:32:47.678 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36952 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36952 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36940 (-176.7 uncal um), Max = 36959 (-176.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:32:47.678 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36952, posNoise = 7, negNoise = 12
17-03-17 21:32:47.678 -07 000000626 INF: Z Motor: After move to -0.177697, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:47.678 -07 000000626 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:32:47.678 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:47.728 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:32:47.728 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:47.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:47.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:47.728 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:47.728 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:47.728 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:47.728 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:47.728 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:47.728 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:47.738 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:32:47.738 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:47.748 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:32:47.748 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:32:47.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:47.798 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:47.988 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:47.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:47.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:47.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:32:48.028 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:48.038 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:48.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:32:48.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:32:48.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:48.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:32:48.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:32:48.138 -07 000000627 INF: Autofocus start
17-03-17 21:32:48.138 -07 000000627 INF: MeasureProfile start
17-03-17 21:32:48.138 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:48.138 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:48.148 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:48.148 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:48.148 -07 000000627 INF: MeasureProfile done
17-03-17 21:32:48.148 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:32:48.148 -07 000000627 INF: Autofocus finished
17-03-17 21:32:48.348 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:48.348 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:32:48.348 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177710839073486. ----------
17-03-17 21:32:48.348 -07 000000610 INF: Cycle	52	Tile	5	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:48.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37350, sync = True, waitForSettling = True)
17-03-17 21:32:48.358 -07 000000610 INF: Z Motor: Moving to -0.170977 mm, started at -0.177711 mm, distance = 6.73 um
17-03-17 21:32:48.358 -07 000000610 INF: FPGA: Xmit ZDACW 37350\n [Z Motor]
17-03-17 21:32:48.358 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:32:48.368 -07 000000610 INF: FPGA: 'ZDACW 37350' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:32:48.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:48.368 -07 000000382 INF: FPGA: Recv ZDACR 37350
17-03-17 21:32:48.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:48.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.528 -07 000000569 INF: FPGA: Recv ZSGSRD 35903
17-03-17 21:32:48.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.538 -07 000000459 INF: FPGA: Recv ZSGSRD 35903
17-03-17 21:32:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.548 -07 000000608 INF: FPGA: Recv ZSGSRD 35908
17-03-17 21:32:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.558 -07 000000475 INF: FPGA: Recv ZSGSRD 35901
17-03-17 21:32:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:32:48.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.578 -07 000000424 INF: FPGA: Recv ZSGSRD 35906
17-03-17 21:32:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35905
17-03-17 21:32:48.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.598 -07 000000458 INF: FPGA: Recv ZSGSRD 35913
17-03-17 21:32:48.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35905
17-03-17 21:32:48.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:48.618 -07 000000512 INF: FPGA: Recv ZSGSRD 35911
17-03-17 21:32:48.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:48.628 -07 000000480 INF: FPGA: Recv ZPIEZORD 31971
17-03-17 21:32:48.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:48.638 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.7 V.
17-03-17 21:32:48.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35901 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:32:48.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 6, negNoise = 6
17-03-17 21:32:48.638 -07 000000610 INF: Z Motor: After move to -0.170977, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:48.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:32:48.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:48.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:48.638 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:48.638 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:48.638 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:48.638 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:48.638 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:48.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:48.638 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:48.638 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:48.638 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:32:48.638 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:48.648 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:48.648 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:48.648 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:32:48.648 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:48.658 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:32:48.658 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:32:48.658 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:32:48.658 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:32:48.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37527 150\n [Camera]
17-03-17 21:32:48.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:49.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:32:49.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:32:49.298 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:49.298 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:32:49.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:32:49.298 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:49.298 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:49.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:32:49.298 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:49.298 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:32:49.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37527 819
17-03-17 21:32:49.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:49.668 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 21:32:49.668 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 21:32:49.668 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:49.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:49.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:32:49.678 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:32:49.678 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:49.678 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:49.678 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:32:49.678 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:32:49.848 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:32:49.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:32:49.848 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:49.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:32:49.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:32:49.848 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:49.858 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:49.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:32:49.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:49.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:32:50.038 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:32:50.038 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:50.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37527 150' command took 2 ms to send, 1373 ms to get response, and 1377 ms overall
17-03-17 21:32:50.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:50.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170997537385346. ------
17-03-17 21:32:50.158 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:50.158 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17741 mm
17-03-17 21:32:50.158 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:50.158 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:50.158 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38756, sync = True, waitForSettling = False)
17-03-17 21:32:50.158 -07 000000424 INF: Z Motor: Moving to -0.177414 mm, started at -0.170998 mm, distance = -6.42 um
17-03-17 21:32:50.158 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:32:50.158 -07 000000608 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:32:50.168 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:50.168 -07 000000424 INF: FPGA: Xmit ZDACW 38756\n [Z Motor]
17-03-17 21:32:50.168 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:32:50.178 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:50.178 -07 000000424 INF: FPGA: 'ZDACW 38756' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:32:50.178 -07 000000012 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:32:50.188 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:50.188 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:32:50.188 -07 000000608 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:50.188 -07 000000608 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:50.188 -07 000000608 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:32:50.198 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:50.198 -07 000000475 INF: FPGA: Recv ZDACR 38756
17-03-17 21:32:50.208 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:50.208 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:50.208 -07 000000424 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:32:50.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.978563,
17-03-17 21:32:50.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:32:50.238 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:32:50.238 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:50.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:50.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:32:50.248 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:32:50.248 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:50.248 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:50.248 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:32:50.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:32:50.388 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:50.388 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:32:50.578 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:32:50.578 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:32:50.618 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:50.618 -07 000000476 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:32:50.628 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:32:50.628 -07 000000608 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:50.628 -07 000000608 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:32:50.628 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:32:51.578 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:51.578 -07 000000458 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:32:51.588 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:51.588 -07 000000608 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:51.608 -07 000000608 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:51.608 -07 000000608 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:32:51.608 -07 000000608 INF: Y Motor: Moved to 64.0566 after 1446 ms (table move)
17-03-17 21:32:51.608 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177414 mm (DAC = 38756)
17-03-17 21:32:51.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36907
17-03-17 21:32:51.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:32:51.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.618 -07 000000429 INF: FPGA: Recv ZSGSRD 36907
17-03-17 21:32:51.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:51.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.628 -07 000000547 INF: FPGA: Recv ZSGSRD 36908
17-03-17 21:32:51.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.638 -07 000000576 INF: FPGA: Recv ZSGSRD 36915
17-03-17 21:32:51.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.648 -07 000000626 INF: FPGA: Recv ZSGSRD 36910
17-03-17 21:32:51.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.658 -07 000000627 INF: FPGA: Recv ZSGSRD 36907
17-03-17 21:32:51.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:32:51.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.678 -07 000000547 INF: FPGA: Recv ZSGSRD 36908
17-03-17 21:32:51.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.688 -07 000000576 INF: FPGA: Recv ZSGSRD 36904
17-03-17 21:32:51.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:51.698 -07 000000626 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:32:51.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.708 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:51.708 -07 000000627 INF: FPGA: Recv ZPIEZORD 33332
17-03-17 21:32:51.718 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:51.718 -07 000000382 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -7.9 V.
17-03-17 21:32:51.718 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36907 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36907 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36902 (-176.5 uncal um), Max = 36915 (-176.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:32:51.718 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36907, posNoise = 8, negNoise = 5
17-03-17 21:32:51.718 -07 000000382 INF: Z Motor: After move to -0.177414, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:51.718 -07 000000382 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:32:51.718 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:51.768 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 21:32:51.768 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:51.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:51.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:51.768 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:51.768 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:51.768 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:51.768 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:51.768 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:51.768 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:51.778 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:51.778 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:51.788 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:32:51.788 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:32:51.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:51.838 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:51.888 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:51.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:52.038 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:52.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:52.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:52.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:32:52.078 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:52.078 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:52.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:32:52.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:32:52.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:52.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:32:52.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 21:32:52.178 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:52.178 -07 000000382 INF: Autofocus start
17-03-17 21:32:52.178 -07 000000382 INF: MeasureProfile start
17-03-17 21:32:52.178 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:52.188 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:52.188 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:52.198 -07 000000382 INF: MeasureProfile done
17-03-17 21:32:52.198 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:32:52.198 -07 000000382 INF: Autofocus finished
17-03-17 21:32:52.388 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:52.388 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:32:52.398 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177421749527107. ----------
17-03-17 21:32:52.398 -07 000000610 INF: Cycle	52	Tile	6	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:52.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37253, sync = True, waitForSettling = True)
17-03-17 21:32:52.398 -07 000000610 INF: Z Motor: Moving to -0.170533 mm, started at -0.177422 mm, distance = 6.89 um
17-03-17 21:32:52.398 -07 000000610 INF: FPGA: Xmit ZDACW 37253\n [Z Motor]
17-03-17 21:32:52.398 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:32:52.408 -07 000000610 INF: FPGA: 'ZDACW 37253' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:52.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:52.408 -07 000000415 INF: FPGA: Recv ZDACR 37253
17-03-17 21:32:52.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:52.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.568 -07 000000512 INF: FPGA: Recv ZSGSRD 35837
17-03-17 21:32:52.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.578 -07 000000458 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:32:52.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.588 -07 000000476 INF: FPGA: Recv ZSGSRD 35837
17-03-17 21:32:52.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.598 -07 000000438 INF: FPGA: Recv ZSGSRD 35834
17-03-17 21:32:52.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.608 -07 000000012 INF: FPGA: Recv ZSGSRD 35839
17-03-17 21:32:52.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35835
17-03-17 21:32:52.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.628 -07 000000458 INF: FPGA: Recv ZSGSRD 35834
17-03-17 21:32:52.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.638 -07 000000569 INF: FPGA: Recv ZSGSRD 35841
17-03-17 21:32:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.648 -07 000000608 INF: FPGA: Recv ZSGSRD 35834
17-03-17 21:32:52.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:52.658 -07 000000547 INF: FPGA: Recv ZSGSRD 35835
17-03-17 21:32:52.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:52.668 -07 000000476 INF: FPGA: Recv ZPIEZORD 31871
17-03-17 21:32:52.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:52.678 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.8 V.
17-03-17 21:32:52.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35836 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35836 (-169.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35834 (-169.7 uncal um), Max = 35841 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:32:52.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35836, posNoise = 5, negNoise = 2
17-03-17 21:32:52.678 -07 000000610 INF: Z Motor: After move to -0.170533, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:52.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:32:52.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:52.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:52.678 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:52.678 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:52.678 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:52.678 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:52.678 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:52.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:52.678 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:52.678 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:52.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:32:52.678 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:52.688 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:32:52.688 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:52.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:32:52.688 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:52.698 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:32:52.698 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:32:52.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:32:52.698 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:32:52.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37430 150\n [Camera]
17-03-17 21:32:52.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:53.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:32:53.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:32:53.328 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:53.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:32:53.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:32:53.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:53.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:53.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:32:53.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:53.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:32:53.528 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37430 819
17-03-17 21:32:53.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:53.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:32:53.708 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:32:53.708 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:53.708 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:32:53.708 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:32:53.708 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:53.718 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:53.718 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:32:53.718 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:53.728 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:32:53.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:32:53.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:32:53.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:53.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:53.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:32:53.888 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:32:53.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:32:53.888 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:53.888 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:53.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:32:54.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:32:54.078 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:54.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37430 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-17 21:32:54.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:54.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170541418323281. ------
17-03-17 21:32:54.088 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:54.088 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17706 mm
17-03-17 21:32:54.088 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:54.088 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:54.088 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:32:54.088 -07 000000547 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:32:54.088 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38679, sync = True, waitForSettling = False)
17-03-17 21:32:54.088 -07 000000431 INF: Z Motor: Moving to -0.177061 mm, started at -0.170541 mm, distance = -6.52 um
17-03-17 21:32:54.098 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:54.098 -07 000000431 INF: FPGA: Xmit ZDACW 38679\n [Z Motor]
17-03-17 21:32:54.098 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:32:54.108 -07 000000431 INF: FPGA: 'ZDACW 38679' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:32:54.108 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:54.108 -07 000000415 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:32:54.118 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:32:54.118 -07 000000547 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:54.118 -07 000000547 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:54.118 -07 000000547 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:32:54.118 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:54.128 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:54.128 -07 000000012 INF: FPGA: Recv ZDACR 38679
17-03-17 21:32:54.138 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:54.138 -07 000000431 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:32:54.138 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:54.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:32:54.288 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:32:54.288 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:54.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:32:54.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:32:54.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:54.288 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:32:54.288 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:32:54.298 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:32:54.298 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:32:54.318 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:54.318 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:32:54.508 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:32:54.508 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 21:32:54.548 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:54.548 -07 000000512 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:32:54.558 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:32:54.558 -07 000000547 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:54.558 -07 000000547 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:32:54.558 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 21:32:55.508 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:55.508 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:32:55.518 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:55.518 -07 000000547 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:55.538 -07 000000547 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:55.538 -07 000000547 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:32:55.538 -07 000000547 INF: Y Motor: Moved to 64.8784 after 1451 ms (table move)
17-03-17 21:32:55.538 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177061 mm (DAC = 38679)
17-03-17 21:32:55.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.548 -07 000000569 INF: FPGA: Recv ZSGSRD 36863
17-03-17 21:32:55.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:32:55.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.548 -07 000000458 INF: FPGA: Recv ZSGSRD 36850
17-03-17 21:32:55.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:55.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.558 -07 000000627 INF: FPGA: Recv ZSGSRD 36849
17-03-17 21:32:55.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:55.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.568 -07 000000476 INF: FPGA: Recv ZSGSRD 36858
17-03-17 21:32:55.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:55.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.578 -07 000000547 INF: FPGA: Recv ZSGSRD 36849
17-03-17 21:32:55.588 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:55.608 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.608 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.997626,
17-03-17 21:32:55.608 -07 000000569 INF: FPGA: Recv ZSGSRD 36845
17-03-17 21:32:55.618 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:55.618 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.618 -07 000000431 INF: FPGA: Recv ZSGSRD 36844
17-03-17 21:32:55.628 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:55.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.638 -07 000000569 INF: FPGA: Recv ZSGSRD 36857
17-03-17 21:32:55.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:32:55.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.648 -07 000000431 INF: FPGA: Recv ZSGSRD 36859
17-03-17 21:32:55.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:55.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:55.678 -07 000000476 INF: FPGA: Recv ZSGSRD 36848
17-03-17 21:32:55.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:55.688 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:55.688 -07 000000431 INF: FPGA: Recv ZPIEZORD 33216
17-03-17 21:32:55.698 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:55.698 -07 000000501 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.1 V.
17-03-17 21:32:55.698 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36852 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36850 (-176.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36844 (-176.1 uncal um), Max = 36863 (-176.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:32:55.698 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36852, posNoise = 11, negNoise = 8
17-03-17 21:32:55.698 -07 000000501 INF: Z Motor: After move to -0.177061, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:55.698 -07 000000501 INF: Z Motor: Settle wait time = 1454 ms, measure time = 152 ms (allowed 150 ms), total time = 1606 ms
17-03-17 21:32:55.698 -07 000000501 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 21:32:55.698 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:32:55.698 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:55.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:55.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:55.698 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:55.698 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:55.698 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:55.708 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:55.708 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:55.708 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:55.708 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:32:55.708 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:55.718 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:32:55.718 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:32:55.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:55.768 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:32:55.968 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:32:55.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:32:55.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:32:55.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:32:56.008 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:32:56.008 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:32:56.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 21:32:56.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:32:56.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:56.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:32:56.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:32:56.108 -07 000000626 INF: Autofocus start
17-03-17 21:32:56.108 -07 000000626 INF: MeasureProfile start
17-03-17 21:32:56.108 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:56.108 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:56.118 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:32:56.118 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:32:56.118 -07 000000626 INF: MeasureProfile done
17-03-17 21:32:56.118 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:32:56.118 -07 000000626 INF: Autofocus finished
17-03-17 21:32:56.318 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:32:56.318 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 21:32:56.318 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.17706841785931. ----------
17-03-17 21:32:56.318 -07 000000610 INF: Cycle	52	Tile	7	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:32:56.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37194, sync = True, waitForSettling = True)
17-03-17 21:32:56.328 -07 000000610 INF: Z Motor: Moving to -0.170263 mm, started at -0.177068 mm, distance = 6.81 um
17-03-17 21:32:56.328 -07 000000610 INF: FPGA: Xmit ZDACW 37194\n [Z Motor]
17-03-17 21:32:56.328 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:32:56.338 -07 000000610 INF: FPGA: 'ZDACW 37194' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:56.338 -07 000000424 INF: FPGA: Recv ZDACR 37194
17-03-17 21:32:56.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:32:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.498 -07 000000476 INF: FPGA: Recv ZSGSRD 35798
17-03-17 21:32:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:56.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.508 -07 000000512 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:32:56.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35796
17-03-17 21:32:56.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.528 -07 000000415 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:32:56.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.538 -07 000000569 INF: FPGA: Recv ZSGSRD 35795
17-03-17 21:32:56.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.548 -07 000000480 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:32:56.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.558 -07 000000476 INF: FPGA: Recv ZSGSRD 35794
17-03-17 21:32:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35803
17-03-17 21:32:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.578 -07 000000012 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:32:56.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:56.588 -07 000000512 INF: FPGA: Recv ZSGSRD 35793
17-03-17 21:32:56.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:56.598 -07 000000547 INF: FPGA: Recv ZPIEZORD 31823
17-03-17 21:32:56.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:56.608 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.675 V. Piezo Error = -8.8 V.
17-03-17 21:32:56.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35795 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35794 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35792 (-169.4 uncal um), Max = 35803 (-169.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:32:56.608 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35795, posNoise = 8, negNoise = 3
17-03-17 21:32:56.608 -07 000000610 INF: Z Motor: After move to -0.170263, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:56.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:32:56.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:56.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:56.608 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:56.608 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:56.608 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:32:56.608 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:32:56.608 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:56.608 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:32:56.608 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:32:56.608 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:32:56.608 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:32:56.608 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:32:56.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:32:56.618 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:32:56.618 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:32:56.618 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:32:56.628 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:32:56.628 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:32:56.628 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:32:56.628 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:32:56.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37371 150\n [Camera]
17-03-17 21:32:56.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:32:56.888 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:32:56.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:32:57.258 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:32:57.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:32:57.268 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:57.268 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:57.268 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:32:57.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:32:57.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:32:57.268 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:57.268 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:57.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:32:57.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37371 819
17-03-17 21:32:57.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:32:57.638 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:32:57.638 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:32:57.638 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:57.638 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:32:57.638 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:32:57.638 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:57.648 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:32:57.648 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:32:57.648 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:32:57.658 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:32:57.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:32:57.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:32:57.818 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:32:57.818 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:32:57.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:32:57.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:32:57.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:32:57.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:32:57.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:32:57.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:32:58.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:32:58.008 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:32:58.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37371 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-17 21:32:58.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:32:58.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170278025625468. ------
17-03-17 21:32:58.128 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17677 mm
17-03-17 21:32:58.128 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:32:58.128 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:32:58.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38616, sync = True, waitForSettling = False)
17-03-17 21:32:58.128 -07 000000431 INF: Z Motor: Moving to -0.176773 mm, started at -0.170278 mm, distance = -6.49 um
17-03-17 21:32:58.128 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:32:58.128 -07 000000382 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:32:58.128 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:32:58.138 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:58.138 -07 000000431 INF: FPGA: Xmit ZDACW 38616\n [Z Motor]
17-03-17 21:32:58.138 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:32:58.148 -07 000000431 INF: FPGA: 'ZDACW 38616' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:32:58.148 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:32:58.158 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:58.158 -07 000000547 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:32:58.168 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:32:58.168 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:32:58.168 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:58.168 -07 000000424 INF: FPGA: Recv ZDACR 38616
17-03-17 21:32:58.168 -07 000000382 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:32:58.168 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:32:58.178 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:32:58.178 -07 000000431 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:32:58.178 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:32:58.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:32:58.208 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:32:58.208 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:58.218 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:32:58.218 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:32:58.218 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:32:58.218 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:32:58.218 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:32:58.218 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:32:58.228 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:32:58.348 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:32:58.348 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:32:58.548 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:32:58.548 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 21:32:58.588 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:58.588 -07 000000547 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:32:58.598 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:32:58.598 -07 000000382 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:58.598 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:32:58.598 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.216 mm/sec
17-03-17 21:32:59.548 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:32:59.548 -07 000000547 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:32:59.558 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:32:59.558 -07 000000382 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:32:59.578 -07 000000382 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:32:59.578 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:32:59.578 -07 000000382 INF: Y Motor: Moved to 65.7139 after 1448 ms (table move)
17-03-17 21:32:59.588 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176773 mm (DAC = 38616)
17-03-17 21:32:59.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.588 -07 000000608 INF: FPGA: Recv ZSGSRD 36809
17-03-17 21:32:59.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.598 -07 000000429 INF: FPGA: Recv ZSGSRD 36813
17-03-17 21:32:59.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.608 -07 000000012 INF: FPGA: Recv ZSGSRD 36809
17-03-17 21:32:59.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36810
17-03-17 21:32:59.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.628 -07 000000382 INF: FPGA: Recv ZSGSRD 36809
17-03-17 21:32:59.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.638 -07 000000438 INF: FPGA: Recv ZSGSRD 36808
17-03-17 21:32:59.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:32:59.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.648 -07 000000458 INF: FPGA: Recv ZSGSRD 36804
17-03-17 21:32:59.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.658 -07 000000431 INF: FPGA: Recv ZSGSRD 36805
17-03-17 21:32:59.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.668 -07 000000627 INF: FPGA: Recv ZSGSRD 36807
17-03-17 21:32:59.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:32:59.678 -07 000000501 INF: FPGA: Recv ZSGSRD 36817
17-03-17 21:32:59.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.688 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:32:59.688 -07 000000480 INF: FPGA: Recv ZPIEZORD 33192
17-03-17 21:32:59.698 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:32:59.698 -07 000000415 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.0 V.
17-03-17 21:32:59.698 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36809 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36809 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36804 (-175.9 uncal um), Max = 36817 (-176.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:32:59.698 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36809, posNoise = 8, negNoise = 5
17-03-17 21:32:59.698 -07 000000415 INF: Z Motor: After move to -0.176773, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:32:59.698 -07 000000415 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-17 21:32:59.698 -07 000000415 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:32:59.738 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:32:59.738 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:32:59.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:32:59.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:32:59.738 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:32:59.738 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:32:59.738 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:32:59.738 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:32:59.738 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:32:59.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:32:59.748 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:32:59.748 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:32:59.758 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:32:59.758 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:32:59.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:32:59.808 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:00.008 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:00.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:00.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:00.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:00.048 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:00.048 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:00.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:33:00.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:33:00.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:00.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:00.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 21:33:00.148 -07 000000431 INF: Autofocus start
17-03-17 21:33:00.148 -07 000000431 INF: MeasureProfile start
17-03-17 21:33:00.148 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:00.148 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:00.158 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:00.158 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:00.168 -07 000000431 INF: MeasureProfile done
17-03-17 21:33:00.168 -07 000000431 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:33:00.168 -07 000000431 INF: Autofocus finished
17-03-17 21:33:00.358 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:00.358 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:00.358 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176792176737214. ----------
17-03-17 21:33:00.368 -07 000000610 INF: Cycle	52	Tile	8	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:00.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37113, sync = True, waitForSettling = True)
17-03-17 21:33:00.368 -07 000000610 INF: Z Motor: Moving to -0.169892 mm, started at -0.176792 mm, distance = 6.90 um
17-03-17 21:33:00.368 -07 000000610 INF: FPGA: Xmit ZDACW 37113\n [Z Motor]
17-03-17 21:33:00.368 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:33:00.378 -07 000000610 INF: FPGA: 'ZDACW 37113' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:33:00.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:00.378 -07 000000424 INF: FPGA: Recv ZDACR 37113
17-03-17 21:33:00.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.538 -07 000000608 INF: FPGA: Recv ZSGSRD 35733
17-03-17 21:33:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.548 -07 000000480 INF: FPGA: Recv ZSGSRD 35740
17-03-17 21:33:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.558 -07 000000576 INF: FPGA: Recv ZSGSRD 35739
17-03-17 21:33:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35730
17-03-17 21:33:00.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.578 -07 000000547 INF: FPGA: Recv ZSGSRD 35737
17-03-17 21:33:00.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35734
17-03-17 21:33:00.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.598 -07 000000458 INF: FPGA: Recv ZSGSRD 35741
17-03-17 21:33:00.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.608 -07 000000569 INF: FPGA: Recv ZSGSRD 35740
17-03-17 21:33:00.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.618 -07 000000475 INF: FPGA: Recv ZSGSRD 35732
17-03-17 21:33:00.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:00.628 -07 000000424 INF: FPGA: Recv ZSGSRD 35737
17-03-17 21:33:00.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:00.638 -07 000000608 INF: FPGA: Recv ZPIEZORD 31749
17-03-17 21:33:00.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:00.648 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -8.8 V.
17-03-17 21:33:00.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35736 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35737 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35730 (-169.0 uncal um), Max = 35741 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:00.648 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35736, posNoise = 5, negNoise = 6
17-03-17 21:33:00.648 -07 000000610 INF: Z Motor: After move to -0.169892, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:00.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:33:00.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:00.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:00.648 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:00.648 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:00.648 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:00.648 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:00.648 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:00.648 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:00.648 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:00.648 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:00.648 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:33:00.648 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:00.658 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:00.658 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:00.658 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:00.658 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:00.668 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:33:00.668 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:00.668 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:33:00.668 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:33:00.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37290 150\n [Camera]
17-03-17 21:33:00.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:01.028 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.000345,
17-03-17 21:33:01.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:01.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:01.308 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:01.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:01.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:01.308 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:01.308 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:01.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:01.308 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:01.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:01.498 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37290 819
17-03-17 21:33:01.648 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:01.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:33:01.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:33:01.688 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:01.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:33:01.688 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:33:01.688 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:01.688 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:01.688 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:01.688 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:33:01.698 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:33:01.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:01.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:01.858 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:01.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:01.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:01.858 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:01.868 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:01.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:33:01.868 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:01.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:33:01.888 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:01.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:02.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:33:02.048 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:02.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37290 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:33:02.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:02.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169898997109105. ------
17-03-17 21:33:02.048 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:02.048 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17634 mm
17-03-17 21:33:02.048 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:02.168 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:02.168 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 21:33:02.168 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:33:02.168 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 21:33:02.168 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:02.168 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38522, sync = True, waitForSettling = False)
17-03-17 21:33:02.168 -07 000000431 INF: Z Motor: Moving to -0.176342 mm, started at -0.169899 mm, distance = -6.44 um
17-03-17 21:33:02.178 -07 000000431 INF: FPGA: Xmit ZDACW 38522\n [Z Motor]
17-03-17 21:33:02.178 -07 000000458 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:33:02.178 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:02.178 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:02.178 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:02.178 -07 000000626 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:33:02.178 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:33:02.188 -07 000000431 INF: FPGA: 'ZDACW 38522' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:33:02.188 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:02.198 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:02.208 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:02.208 -07 000000608 INF: FPGA: Recv ZDACR 38522
17-03-17 21:33:02.218 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:02.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 21:33:02.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:33:02.258 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:33:02.258 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:02.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:33:02.258 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:33:02.258 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:02.268 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:02.268 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:02.268 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:33:02.268 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:33:02.388 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:02.388 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 21:33:02.578 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:33:02.578 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 398 ms overall
17-03-17 21:33:02.608 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:02.618 -07 000000431 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:33:02.618 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:33:02.618 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:02.618 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:33:02.618 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.102 mm/sec
17-03-17 21:33:03.568 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:03.568 -07 000000480 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:33:03.578 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:03.578 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:03.598 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:03.598 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:03.598 -07 000000626 INF: Y Motor: Moved to 66.5386 after 1431 ms (table move)
17-03-17 21:33:03.598 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176342 mm (DAC = 38522)
17-03-17 21:33:03.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.608 -07 000000475 INF: FPGA: Recv ZSGSRD 36744
17-03-17 21:33:03.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:33:03.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.608 -07 000000480 INF: FPGA: Recv ZSGSRD 36734
17-03-17 21:33:03.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:03.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.618 -07 000000626 INF: FPGA: Recv ZSGSRD 36731
17-03-17 21:33:03.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:03.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36737
17-03-17 21:33:03.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36744
17-03-17 21:33:03.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.648 -07 000000608 INF: FPGA: Recv ZSGSRD 36748
17-03-17 21:33:03.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.658 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.658 -07 000000475 INF: FPGA: Recv ZSGSRD 36738
17-03-17 21:33:03.668 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.668 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.668 -07 000000438 INF: FPGA: Recv ZSGSRD 36736
17-03-17 21:33:03.678 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.678 -07 000000576 INF: FPGA: Recv ZSGSRD 36740
17-03-17 21:33:03.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:03.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36734
17-03-17 21:33:03.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.698 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:03.698 -07 000000626 INF: FPGA: Recv ZPIEZORD 33111
17-03-17 21:33:03.708 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:03.708 -07 000000512 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.878 V. Piezo Error = -8.0 V.
17-03-17 21:33:03.708 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36739 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36731 (-175.4 uncal um), Max = 36748 (-175.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:33:03.708 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36739, posNoise = 9, negNoise = 8
17-03-17 21:33:03.708 -07 000000512 INF: Z Motor: After move to -0.176342, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:03.708 -07 000000512 INF: Z Motor: Settle wait time = 1434 ms, measure time = 101 ms (allowed 150 ms), total time = 1535 ms
17-03-17 21:33:03.708 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:03.758 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 21:33:03.758 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:03.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:03.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:03.758 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:03.758 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:03.758 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:03.758 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:03.758 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:33:03.758 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:03.768 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:03.768 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:03.778 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:33:03.778 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:33:03.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:03.828 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:04.028 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:04.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:04.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:04.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:04.058 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:04.068 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:04.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:33:04.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:33:04.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:04.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:04.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:33:04.168 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:04.168 -07 000000012 INF: Autofocus start
17-03-17 21:33:04.168 -07 000000012 INF: MeasureProfile start
17-03-17 21:33:04.178 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:04.178 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 21:33:04.178 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:04.178 -07 000000012 INF: MeasureProfile done
17-03-17 21:33:04.178 -07 000000012 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:33:04.178 -07 000000012 INF: Autofocus finished
17-03-17 21:33:04.378 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:04.378 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:33:04.378 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176342481887291. ----------
17-03-17 21:33:04.378 -07 000000610 INF: Cycle	52	Tile	9	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:04.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37073, sync = True, waitForSettling = True)
17-03-17 21:33:04.388 -07 000000610 INF: Z Motor: Moving to -0.169709 mm, started at -0.176342 mm, distance = 6.63 um
17-03-17 21:33:04.388 -07 000000610 INF: FPGA: Xmit ZDACW 37073\n [Z Motor]
17-03-17 21:33:04.388 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:33:04.398 -07 000000610 INF: FPGA: 'ZDACW 37073' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:04.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:04.398 -07 000000608 INF: FPGA: Recv ZDACR 37073
17-03-17 21:33:04.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.558 -07 000000012 INF: FPGA: Recv ZSGSRD 35714
17-03-17 21:33:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.568 -07 000000626 INF: FPGA: Recv ZSGSRD 35713
17-03-17 21:33:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.578 -07 000000569 INF: FPGA: Recv ZSGSRD 35710
17-03-17 21:33:04.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35699
17-03-17 21:33:04.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.598 -07 000000382 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:33:04.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.608 -07 000000476 INF: FPGA: Recv ZSGSRD 35714
17-03-17 21:33:04.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.618 -07 000000626 INF: FPGA: Recv ZSGSRD 35711
17-03-17 21:33:04.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.628 -07 000000576 INF: FPGA: Recv ZSGSRD 35709
17-03-17 21:33:04.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.638 -07 000000547 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:33:04.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:04.648 -07 000000424 INF: FPGA: Recv ZSGSRD 35711
17-03-17 21:33:04.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:04.658 -07 000000480 INF: FPGA: Recv ZPIEZORD 31723
17-03-17 21:33:04.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:04.668 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -8.8 V.
17-03-17 21:33:04.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35709 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35710 (-168.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35699 (-168.8 uncal um), Max = 35714 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:33:04.668 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35709, posNoise = 5, negNoise = 10
17-03-17 21:33:04.668 -07 000000610 INF: Z Motor: After move to -0.169709, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:04.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:33:04.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:04.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:04.668 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:04.668 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:04.668 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:04.668 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:04.668 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:04.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:04.668 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:33:04.668 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:04.668 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:33:04.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:04.678 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:04.678 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:04.678 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:04.678 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:04.688 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:33:04.688 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:04.688 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:33:04.688 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:33:04.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37249 150\n [Camera]
17-03-17 21:33:04.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:05.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:05.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:05.318 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:05.328 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:05.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:05.328 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:05.328 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:05.328 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:05.328 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:05.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:05.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37249 819
17-03-17 21:33:05.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:05.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:33:05.698 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:33:05.698 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:05.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:33:05.708 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:33:05.708 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:05.708 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:05.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:05.708 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:33:05.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:33:05.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1181
17-03-17 21:33:05.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1181
17-03-17 21:33:05.878 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:05.878 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:05.878 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:33:05.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1181
17-03-17 21:33:05.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1181
17-03-17 21:33:05.878 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:05.878 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:05.878 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:33:06.068 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:33:06.068 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:06.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37249 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:33:06.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:06.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169725543381277. ------
17-03-17 21:33:06.068 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17642 mm
17-03-17 21:33:06.068 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:06.068 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:33:06.068 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:33:06.068 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38539, sync = True, waitForSettling = False)
17-03-17 21:33:06.068 -07 000000626 INF: Z Motor: Moving to -0.176420 mm, started at -0.169726 mm, distance = -6.69 um
17-03-17 21:33:06.078 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:06.078 -07 000000480 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:33:06.088 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:06.088 -07 000000431 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:06.088 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:06.088 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:06.088 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:06.088 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:33:06.098 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:33:06.098 -07 000000626 INF: FPGA: Xmit ZDACW 38539\n [Z Motor]
17-03-17 21:33:06.098 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:33:06.108 -07 000000626 INF: FPGA: 'ZDACW 38539' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:06.108 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:06.118 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:06.128 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:06.128 -07 000000476 INF: FPGA: Recv ZDACR 38539
17-03-17 21:33:06.138 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:33:06.138 -07 000000626 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 21:33:06.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:33:06.268 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:33:06.268 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:06.268 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:33:06.268 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:33:06.268 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:06.268 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:06.278 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:33:06.278 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:33:06.278 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:33:06.318 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:06.318 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 21:33:06.388 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.990831,
17-03-17 21:33:06.478 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:33:06.478 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:33:06.518 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:06.518 -07 000000476 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:33:06.528 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:06.528 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:06.528 -07 000000431 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:33:06.528 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 21:33:06.888 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:06.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:07.478 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:07.478 -07 000000429 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:33:07.488 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:07.488 -07 000000431 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:07.508 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:07.508 -07 000000431 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:07.508 -07 000000431 INF: Y Motor: Moved to 67.3716 after 1434 ms (table move)
17-03-17 21:33:07.508 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176420 mm (DAC = 38539)
17-03-17 21:33:07.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.518 -07 000000569 INF: FPGA: Recv ZSGSRD 36756
17-03-17 21:33:07.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:33:07.518 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36753
17-03-17 21:33:07.528 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:07.528 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36752
17-03-17 21:33:07.538 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.538 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.538 -07 000000512 INF: FPGA: Recv ZSGSRD 36758
17-03-17 21:33:07.548 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.548 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.548 -07 000000501 INF: FPGA: Recv ZSGSRD 36749
17-03-17 21:33:07.558 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.558 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:33:07.568 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.568 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.568 -07 000000547 INF: FPGA: Recv ZSGSRD 36750
17-03-17 21:33:07.578 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.578 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.578 -07 000000382 INF: FPGA: Recv ZSGSRD 36747
17-03-17 21:33:07.588 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.588 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.588 -07 000000569 INF: FPGA: Recv ZSGSRD 36748
17-03-17 21:33:07.598 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:07.598 -07 000000458 INF: FPGA: Recv ZSGSRD 36752
17-03-17 21:33:07.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.608 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:07.608 -07 000000438 INF: FPGA: Recv ZPIEZORD 33107
17-03-17 21:33:07.618 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:07.618 -07 000000424 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.1 V.
17-03-17 21:33:07.618 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36752 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36747 (-175.5 uncal um), Max = 36758 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:33:07.618 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36752, posNoise = 6, negNoise = 5
17-03-17 21:33:07.618 -07 000000424 INF: Z Motor: After move to -0.176420, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:07.618 -07 000000424 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:33:07.618 -07 000000424 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:07.668 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:33:07.668 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:07.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:07.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:07.668 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:07.668 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:07.668 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:07.668 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:07.668 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:07.668 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:07.678 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:07.678 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:07.688 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:33:07.688 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:33:07.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:07.738 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:07.938 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:07.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:07.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:07.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:33:07.978 -07 000000458 INF: FPGA: Recv @CAMSNAP 282
17-03-17 21:33:07.978 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:07.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 21:33:08.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:33:08.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:08.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:08.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:33:08.078 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:08.078 -07 000000512 INF: Autofocus start
17-03-17 21:33:08.078 -07 000000512 INF: MeasureProfile start
17-03-17 21:33:08.078 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:08.088 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:08.088 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:08.088 -07 000000512 INF: MeasureProfile done
17-03-17 21:33:08.088 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:08.088 -07 000000512 INF: Autofocus finished
17-03-17 21:33:08.288 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:08.288 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:08.298 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176425996645134. ----------
17-03-17 21:33:08.298 -07 000000610 INF: Cycle	52	Tile	10	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:08.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37054, sync = True, waitForSettling = True)
17-03-17 21:33:08.298 -07 000000610 INF: Z Motor: Moving to -0.169622 mm, started at -0.176426 mm, distance = 6.80 um
17-03-17 21:33:08.298 -07 000000610 INF: FPGA: Xmit ZDACW 37054\n [Z Motor]
17-03-17 21:33:08.298 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:33:08.308 -07 000000610 INF: FPGA: 'ZDACW 37054' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:08.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:08.308 -07 000000627 INF: FPGA: Recv ZDACR 37054
17-03-17 21:33:08.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:08.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.468 -07 000000626 INF: FPGA: Recv ZSGSRD 35696
17-03-17 21:33:08.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:08.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.478 -07 000000424 INF: FPGA: Recv ZSGSRD 35694
17-03-17 21:33:08.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.488 -07 000000458 INF: FPGA: Recv ZSGSRD 35697
17-03-17 21:33:08.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.498 -07 000000547 INF: FPGA: Recv ZSGSRD 35693
17-03-17 21:33:08.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:33:08.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.518 -07 000000576 INF: FPGA: Recv ZSGSRD 35700
17-03-17 21:33:08.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.528 -07 000000569 INF: FPGA: Recv ZSGSRD 35694
17-03-17 21:33:08.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.538 -07 000000458 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:33:08.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.548 -07 000000547 INF: FPGA: Recv ZSGSRD 35693
17-03-17 21:33:08.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:08.558 -07 000000415 INF: FPGA: Recv ZSGSRD 35695
17-03-17 21:33:08.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:08.568 -07 000000476 INF: FPGA: Recv ZPIEZORD 31711
17-03-17 21:33:08.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:08.578 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -8.8 V.
17-03-17 21:33:08.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35695 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35694 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35692 (-168.7 uncal um), Max = 35700 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:33:08.578 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35695, posNoise = 5, negNoise = 3
17-03-17 21:33:08.578 -07 000000610 INF: Z Motor: After move to -0.169622, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:08.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:33:08.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:08.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:08.578 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:08.578 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:08.578 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:08.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:08.578 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:08.578 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:08.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:08.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:08.578 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:33:08.578 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:08.588 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:08.588 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:08.588 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:08.588 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:08.598 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:33:08.598 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:33:08.598 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:33:08.598 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:08.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37231 150\n [Camera]
17-03-17 21:33:08.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:09.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:09.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:09.228 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:09.238 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:09.238 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:33:09.238 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:09.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:09.238 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:09.238 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:09.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:33:09.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37231 819
17-03-17 21:33:09.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 972
17-03-17 21:33:09.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:33:09.618 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:33:09.618 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:09.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:33:09.618 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:33:09.618 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:09.618 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:09.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:09.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:33:09.628 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:33:09.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:09.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:09.788 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:09.788 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:09.788 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:33:09.788 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:09.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:09.788 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:09.788 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:09.788 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:33:09.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1372
17-03-17 21:33:09.978 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:09.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37231 150' command took 2 ms to send, 1374 ms to get response, and 1379 ms overall
17-03-17 21:33:09.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:09.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169635604411292. ------
17-03-17 21:33:09.978 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:09.978 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17603 mm
17-03-17 21:33:09.978 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:10.108 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:10.108 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-17 21:33:10.108 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:10.108 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:33:10.108 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:33:10.108 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38455, sync = True, waitForSettling = False)
17-03-17 21:33:10.108 -07 000000458 INF: Z Motor: Moving to -0.176036 mm, started at -0.169636 mm, distance = -6.40 um
17-03-17 21:33:10.118 -07 000000458 INF: FPGA: Xmit ZDACW 38455\n [Z Motor]
17-03-17 21:33:10.118 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:33:10.128 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:10.128 -07 000000458 INF: FPGA: 'ZDACW 38455' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:33:10.128 -07 000000415 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:33:10.138 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:33:10.138 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:10.138 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:10.138 -07 000000476 INF: FPGA: Recv ZDACR 38455
17-03-17 21:33:10.138 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:10.138 -07 000000576 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:33:10.148 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:10.148 -07 000000458 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 21:33:10.148 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:10.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:33:10.178 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:33:10.178 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:10.178 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:33:10.178 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:33:10.178 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:10.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:10.188 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:33:10.188 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:33:10.188 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:33:10.308 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:10.308 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:33:10.518 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:33:10.518 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:33:10.558 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:10.558 -07 000000431 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:33:10.568 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:10.568 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:10.568 -07 000000576 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:33:10.568 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.190 mm/sec
17-03-17 21:33:11.518 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:11.518 -07 000000475 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:33:11.528 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:11.528 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:11.548 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:11.548 -07 000000576 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:11.548 -07 000000576 INF: Y Motor: Moved to 68.2046 after 1437 ms (table move)
17-03-17 21:33:11.548 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176036 mm (DAC = 38455)
17-03-17 21:33:11.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.558 -07 000000512 INF: FPGA: Recv ZSGSRD 36696
17-03-17 21:33:11.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:33:11.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.558 -07 000000626 INF: FPGA: Recv ZSGSRD 36698
17-03-17 21:33:11.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.568 -07 000000627 INF: FPGA: Recv ZSGSRD 36692
17-03-17 21:33:11.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.578 -07 000000415 INF: FPGA: Recv ZSGSRD 36696
17-03-17 21:33:11.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.588 -07 000000431 INF: FPGA: Recv ZSGSRD 36698
17-03-17 21:33:11.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:11.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.598 -07 000000576 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:33:11.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.608 -07 000000429 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:33:11.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.618 -07 000000459 INF: FPGA: Recv ZSGSRD 36688
17-03-17 21:33:11.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.628 -07 000000438 INF: FPGA: Recv ZSGSRD 36692
17-03-17 21:33:11.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:11.638 -07 000000424 INF: FPGA: Recv ZSGSRD 36698
17-03-17 21:33:11.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.648 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:11.648 -07 000000576 INF: FPGA: Recv ZPIEZORD 33018
17-03-17 21:33:11.658 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:11.658 -07 000000382 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.1 V.
17-03-17 21:33:11.658 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36694 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36694 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36688 (-175.1 uncal um), Max = 36698 (-175.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:11.658 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36694, posNoise = 4, negNoise = 6
17-03-17 21:33:11.658 -07 000000382 INF: Z Motor: After move to -0.176036, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:11.658 -07 000000382 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:33:11.658 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:11.708 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 21:33:11.708 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:11.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:11.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:11.708 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:11.708 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:11.708 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:11.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:11.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:11.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:11.718 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:11.718 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:11.728 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:33:11.728 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:33:11.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:11.758 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.026244,
17-03-17 21:33:11.778 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:33:11.888 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:11.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:11.978 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:33:11.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:33:11.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:11.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:12.018 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:12.018 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:12.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 21:33:12.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:33:12.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:12.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:33:12.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:33:12.118 -07 000000501 INF: Autofocus start
17-03-17 21:33:12.118 -07 000000501 INF: MeasureProfile start
17-03-17 21:33:12.118 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:12.118 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:12.128 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:12.128 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:12.128 -07 000000501 INF: MeasureProfile done
17-03-17 21:33:12.128 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:33:12.128 -07 000000501 INF: Autofocus finished
17-03-17 21:33:12.328 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:12.328 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:12.328 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.176053392340911. ----------
17-03-17 21:33:12.328 -07 000000610 INF: Cycle	52	Tile	11	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:12.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36935, sync = True, waitForSettling = True)
17-03-17 21:33:12.338 -07 000000610 INF: Z Motor: Moving to -0.169078 mm, started at -0.176053 mm, distance = 6.98 um
17-03-17 21:33:12.338 -07 000000610 INF: FPGA: Xmit ZDACW 36935\n [Z Motor]
17-03-17 21:33:12.338 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:33:12.348 -07 000000610 INF: FPGA: 'ZDACW 36935' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:12.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:12.348 -07 000000438 INF: FPGA: Recv ZDACR 36935
17-03-17 21:33:12.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.508 -07 000000512 INF: FPGA: Recv ZSGSRD 35609
17-03-17 21:33:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.518 -07 000000415 INF: FPGA: Recv ZSGSRD 35612
17-03-17 21:33:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.528 -07 000000459 INF: FPGA: Recv ZSGSRD 35604
17-03-17 21:33:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.538 -07 000000429 INF: FPGA: Recv ZSGSRD 35609
17-03-17 21:33:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.548 -07 000000626 INF: FPGA: Recv ZSGSRD 35613
17-03-17 21:33:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.558 -07 000000382 INF: FPGA: Recv ZSGSRD 35612
17-03-17 21:33:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35611
17-03-17 21:33:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.578 -07 000000012 INF: FPGA: Recv ZSGSRD 35609
17-03-17 21:33:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.588 -07 000000458 INF: FPGA: Recv ZSGSRD 35613
17-03-17 21:33:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:12.598 -07 000000438 INF: FPGA: Recv ZSGSRD 35613
17-03-17 21:33:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:12.608 -07 000000512 INF: FPGA: Recv ZPIEZORD 31611
17-03-17 21:33:12.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:12.618 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.8 V.
17-03-17 21:33:12.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35613 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:12.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 3, negNoise = 6
17-03-17 21:33:12.618 -07 000000610 INF: Z Motor: After move to -0.169078, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:12.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:33:12.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:12.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:12.618 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:12.618 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:12.618 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:12.618 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:12.618 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:12.618 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:12.618 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:33:12.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:12.618 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:12.618 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:12.628 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:12.628 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:12.628 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:12.628 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:12.638 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:33:12.638 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:12.638 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:33:12.638 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:33:12.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37111 150\n [Camera]
17-03-17 21:33:12.838 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:13.268 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:13.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:13.278 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:13.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:13.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:13.278 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:13.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:13.278 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:13.278 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:13.278 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:13.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37111 819
17-03-17 21:33:13.618 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:13.648 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:33:13.648 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:33:13.648 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:13.648 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 21:33:13.648 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 21:33:13.648 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:13.658 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:13.658 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:33:13.658 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:13.668 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:33:13.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:13.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:13.828 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:13.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:13.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:13.828 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:13.838 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:13.838 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:33:13.838 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:13.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:33:14.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:33:14.018 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:14.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37111 150' command took 2 ms to send, 1373 ms to get response, and 1378 ms overall
17-03-17 21:33:14.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:14.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169089546379243. ------
17-03-17 21:33:14.138 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:14.138 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17567 mm
17-03-17 21:33:14.138 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:14.138 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:14.138 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:33:14.138 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38374, sync = True, waitForSettling = False)
17-03-17 21:33:14.138 -07 000000458 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:33:14.138 -07 000000569 INF: Z Motor: Moving to -0.175665 mm, started at -0.169090 mm, distance = -6.58 um
17-03-17 21:33:14.148 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:14.148 -07 000000569 INF: FPGA: Xmit ZDACW 38374\n [Z Motor]
17-03-17 21:33:14.148 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:33:14.158 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:14.158 -07 000000569 INF: FPGA: 'ZDACW 38374' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:33:14.158 -07 000000512 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:33:14.168 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:33:14.168 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:14.168 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:14.168 -07 000000458 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:14.168 -07 000000458 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:33:14.178 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:14.178 -07 000000012 INF: FPGA: Recv ZDACR 38374
17-03-17 21:33:14.188 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:14.188 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:14.188 -07 000000569 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 21:33:14.238 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:33:14.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:33:14.238 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:33:14.238 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:14.238 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:33:14.238 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:14.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:14.238 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:14.238 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 21:33:14.248 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:33:14.368 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:14.368 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:33:14.558 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:33:14.558 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:33:14.598 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:14.598 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:33:14.608 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:14.608 -07 000000458 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:14.608 -07 000000458 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:33:14.608 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.127 mm/sec
17-03-17 21:33:15.558 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:15.558 -07 000000415 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:33:15.568 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:15.568 -07 000000458 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:15.588 -07 000000458 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:15.588 -07 000000458 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:33:15.588 -07 000000458 INF: Y Motor: Moved to 69.0269 after 1448 ms (table move)
17-03-17 21:33:15.588 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175665 mm (DAC = 38374)
17-03-17 21:33:15.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.598 -07 000000382 INF: FPGA: Recv ZSGSRD 36639
17-03-17 21:33:15.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:33:15.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.598 -07 000000480 INF: FPGA: Recv ZSGSRD 36638
17-03-17 21:33:15.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.608 -07 000000475 INF: FPGA: Recv ZSGSRD 36637
17-03-17 21:33:15.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.618 -07 000000608 INF: FPGA: Recv ZSGSRD 36642
17-03-17 21:33:15.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.628 -07 000000458 INF: FPGA: Recv ZSGSRD 36637
17-03-17 21:33:15.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.638 -07 000000459 INF: FPGA: Recv ZSGSRD 36635
17-03-17 21:33:15.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.648 -07 000000547 INF: FPGA: Recv ZSGSRD 36633
17-03-17 21:33:15.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36631
17-03-17 21:33:15.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.668 -07 000000382 INF: FPGA: Recv ZSGSRD 36636
17-03-17 21:33:15.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:15.678 -07 000000458 INF: FPGA: Recv ZSGSRD 36631
17-03-17 21:33:15.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.688 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:15.688 -07 000000424 INF: FPGA: Recv ZPIEZORD 32964
17-03-17 21:33:15.698 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:15.698 -07 000000429 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.1 V.
17-03-17 21:33:15.698 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36636 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36631 (-174.8 uncal um), Max = 36642 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:33:15.698 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36636, posNoise = 6, negNoise = 5
17-03-17 21:33:15.698 -07 000000429 INF: Z Motor: After move to -0.175665, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:15.698 -07 000000429 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:33:15.698 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:15.748 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 21:33:15.748 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:15.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:15.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:15.748 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:15.748 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:15.748 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:15.748 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:15.758 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:15.758 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:15.758 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:15.758 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:15.768 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:33:15.768 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:33:15.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:15.808 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:16.008 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:16.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:16.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:16.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:16.048 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:16.048 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:16.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:33:16.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:33:16.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:16.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:33:16.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:33:16.148 -07 000000512 INF: Autofocus start
17-03-17 21:33:16.148 -07 000000512 INF: MeasureProfile start
17-03-17 21:33:16.148 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:16.148 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:16.158 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:16.158 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:16.158 -07 000000512 INF: MeasureProfile done
17-03-17 21:33:16.158 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:16.158 -07 000000512 INF: Autofocus finished
17-03-17 21:33:16.358 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:16.358 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:16.358 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175680788036689. ----------
17-03-17 21:33:16.368 -07 000000610 INF: Cycle	52	Tile	12	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:16.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36889, sync = True, waitForSettling = True)
17-03-17 21:33:16.368 -07 000000610 INF: Z Motor: Moving to -0.168867 mm, started at -0.175681 mm, distance = 6.81 um
17-03-17 21:33:16.368 -07 000000610 INF: FPGA: Xmit ZDACW 36889\n [Z Motor]
17-03-17 21:33:16.368 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:33:16.378 -07 000000610 INF: FPGA: 'ZDACW 36889' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:16.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:16.378 -07 000000608 INF: FPGA: Recv ZDACR 36889
17-03-17 21:33:16.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:16.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.538 -07 000000569 INF: FPGA: Recv ZSGSRD 35575
17-03-17 21:33:16.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:16.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.548 -07 000000438 INF: FPGA: Recv ZSGSRD 35574
17-03-17 21:33:16.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.558 -07 000000424 INF: FPGA: Recv ZSGSRD 35578
17-03-17 21:33:16.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.568 -07 000000547 INF: FPGA: Recv ZSGSRD 35578
17-03-17 21:33:16.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.578 -07 000000627 INF: FPGA: Recv ZSGSRD 35573
17-03-17 21:33:16.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35569
17-03-17 21:33:16.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.598 -07 000000458 INF: FPGA: Recv ZSGSRD 35575
17-03-17 21:33:16.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.608 -07 000000476 INF: FPGA: Recv ZSGSRD 35583
17-03-17 21:33:16.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.618 -07 000000512 INF: FPGA: Recv ZSGSRD 35573
17-03-17 21:33:16.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:16.628 -07 000000501 INF: FPGA: Recv ZSGSRD 35575
17-03-17 21:33:16.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:16.638 -07 000000012 INF: FPGA: Recv ZPIEZORD 31561
17-03-17 21:33:16.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:16.648 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -8.9 V.
17-03-17 21:33:16.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35575 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35575 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35583 (-168.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:16.648 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35575, posNoise = 8, negNoise = 6
17-03-17 21:33:16.648 -07 000000610 INF: Z Motor: After move to -0.168867, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:16.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:33:16.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:16.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:16.648 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:16.648 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:16.648 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:16.648 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:16.648 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:16.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:16.648 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:33:16.648 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:16.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:33:16.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:16.658 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:16.658 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:16.658 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:16.658 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:16.668 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:33:16.668 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:16.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:33:16.668 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:16.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 37066 150\n [Camera]
17-03-17 21:33:16.868 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:16.888 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:16.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:17.128 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.001704,
17-03-17 21:33:17.298 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:17.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:17.308 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:17.308 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:17.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:17.308 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:17.308 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:17.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:17.308 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:17.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:17.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37066 819
17-03-17 21:33:17.648 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:17.708 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:33:17.708 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:33:17.708 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:17.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:33:17.708 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:33:17.708 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:17.708 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:17.708 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:33:17.708 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:17.718 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:33:17.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:17.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:17.858 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:17.858 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:17.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:33:17.858 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:17.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:17.858 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:17.858 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:17.858 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:33:18.048 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:33:18.048 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:18.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 37066 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-17 21:33:18.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:18.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168864698954281. ------
17-03-17 21:33:18.058 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:18.058 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17519 mm
17-03-17 21:33:18.058 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:18.058 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:33:18.058 -07 000000608 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:33:18.058 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:18.058 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38270, sync = True, waitForSettling = False)
17-03-17 21:33:18.058 -07 000000475 INF: Z Motor: Moving to -0.175189 mm, started at -0.168865 mm, distance = -6.32 um
17-03-17 21:33:18.068 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:18.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:18.068 -07 000000627 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:33:18.078 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:33:18.078 -07 000000608 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:18.078 -07 000000608 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:18.078 -07 000000608 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:33:18.078 -07 000000475 INF: FPGA: Xmit ZDACW 38270\n [Z Motor]
17-03-17 21:33:18.078 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:33:18.088 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:18.088 -07 000000475 INF: FPGA: 'ZDACW 38270' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:33:18.098 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:18.108 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:18.108 -07 000000547 INF: FPGA: Recv ZDACR 38270
17-03-17 21:33:18.118 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:18.118 -07 000000475 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:33:18.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:33:18.248 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:33:18.248 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:18.248 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:33:18.248 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:33:18.248 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:18.248 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:18.258 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:33:18.258 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:33:18.258 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:33:18.288 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:18.288 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:33:18.468 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:33:18.468 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:33:18.508 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:18.508 -07 000000475 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:33:18.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:18.518 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:18.518 -07 000000608 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:33:18.518 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 21:33:19.468 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:19.468 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:33:19.478 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:19.478 -07 000000608 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:19.498 -07 000000608 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:19.498 -07 000000608 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:19.498 -07 000000608 INF: Y Motor: Moved to 69.8628 after 1442 ms (table move)
17-03-17 21:33:19.498 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175189 mm (DAC = 38270)
17-03-17 21:33:19.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.508 -07 000000626 INF: FPGA: Recv ZSGSRD 36569
17-03-17 21:33:19.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:33:19.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36560
17-03-17 21:33:19.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:19.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.518 -07 000000576 INF: FPGA: Recv ZSGSRD 36564
17-03-17 21:33:19.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36562
17-03-17 21:33:19.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.538 -07 000000458 INF: FPGA: Recv ZSGSRD 36562
17-03-17 21:33:19.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.548 -07 000000547 INF: FPGA: Recv ZSGSRD 36564
17-03-17 21:33:19.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.558 -07 000000382 INF: FPGA: Recv ZSGSRD 36560
17-03-17 21:33:19.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.568 -07 000000576 INF: FPGA: Recv ZSGSRD 36555
17-03-17 21:33:19.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36558
17-03-17 21:33:19.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:19.588 -07 000000458 INF: FPGA: Recv ZSGSRD 36563
17-03-17 21:33:19.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.598 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:19.598 -07 000000547 INF: FPGA: Recv ZPIEZORD 32882
17-03-17 21:33:19.608 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:19.608 -07 000000431 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.2 V.
17-03-17 21:33:19.608 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36562 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36562 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36555 (-174.3 uncal um), Max = 36569 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:33:19.608 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36562, posNoise = 7, negNoise = 7
17-03-17 21:33:19.608 -07 000000431 INF: Z Motor: After move to -0.175189, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:19.608 -07 000000431 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:33:19.608 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:19.658 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:33:19.658 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:19.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:19.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:19.658 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:19.658 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:19.658 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:19.658 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:19.668 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:33:19.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:19.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:19.668 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:19.678 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:33:19.678 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:33:19.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:19.728 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:19.928 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:19.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:19.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:19.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:33:19.968 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:19.968 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:19.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 21:33:20.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:33:20.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:20.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:20.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:33:20.068 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:20.068 -07 000000476 INF: Autofocus start
17-03-17 21:33:20.068 -07 000000476 INF: MeasureProfile start
17-03-17 21:33:20.068 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:20.078 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:20.078 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:20.088 -07 000000476 INF: MeasureProfile done
17-03-17 21:33:20.088 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:20.088 -07 000000476 INF: Autofocus finished
17-03-17 21:33:20.278 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:20.278 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:33:20.288 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175205396338199. ----------
17-03-17 21:33:20.288 -07 000000610 INF: Cycle	52	Tile	13	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:20.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36785, sync = True, waitForSettling = True)
17-03-17 21:33:20.288 -07 000000610 INF: Z Motor: Moving to -0.168391 mm, started at -0.175205 mm, distance = 6.81 um
17-03-17 21:33:20.288 -07 000000610 INF: FPGA: Xmit ZDACW 36785\n [Z Motor]
17-03-17 21:33:20.288 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:33:20.298 -07 000000610 INF: FPGA: 'ZDACW 36785' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:33:20.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:20.298 -07 000000012 INF: FPGA: Recv ZDACR 36785
17-03-17 21:33:20.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.458 -07 000000475 INF: FPGA: Recv ZSGSRD 35507
17-03-17 21:33:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:20.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.468 -07 000000431 INF: FPGA: Recv ZSGSRD 35498
17-03-17 21:33:20.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.478 -07 000000626 INF: FPGA: Recv ZSGSRD 35498
17-03-17 21:33:20.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35504
17-03-17 21:33:20.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.498 -07 000000547 INF: FPGA: Recv ZSGSRD 35505
17-03-17 21:33:20.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.508 -07 000000458 INF: FPGA: Recv ZSGSRD 35504
17-03-17 21:33:20.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.518 -07 000000569 INF: FPGA: Recv ZSGSRD 35505
17-03-17 21:33:20.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.528 -07 000000480 INF: FPGA: Recv ZSGSRD 35503
17-03-17 21:33:20.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.538 -07 000000608 INF: FPGA: Recv ZSGSRD 35502
17-03-17 21:33:20.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:20.548 -07 000000431 INF: FPGA: Recv ZSGSRD 35503
17-03-17 21:33:20.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:20.558 -07 000000480 INF: FPGA: Recv ZPIEZORD 31479
17-03-17 21:33:20.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:20.568 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -8.9 V.
17-03-17 21:33:20.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35503 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35504 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35498 (-167.5 uncal um), Max = 35507 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:33:20.568 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35503, posNoise = 4, negNoise = 5
17-03-17 21:33:20.568 -07 000000610 INF: Z Motor: After move to -0.168391, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:20.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:33:20.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:20.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:20.568 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:20.568 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:20.568 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:20.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:20.568 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:20.568 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:20.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:20.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:20.568 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:33:20.568 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:20.568 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:20.568 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:20.578 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:20.578 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:20.578 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:33:20.578 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:20.578 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:33:20.578 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:20.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36962 150\n [Camera]
17-03-17 21:33:20.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:21.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:21.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:21.228 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:21.228 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:21.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:33:21.228 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:21.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:21.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:21.228 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:21.228 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:33:21.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36962 819
17-03-17 21:33:21.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:21.598 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:33:21.598 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:33:21.598 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:21.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:33:21.598 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:33:21.598 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:21.598 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:21.608 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:21.608 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:33:21.608 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:33:21.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:21.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:21.778 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:21.778 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:21.778 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:33:21.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:21.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:21.778 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:21.778 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:21.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:33:21.888 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:21.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:21.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:33:21.968 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:21.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36962 150' command took 4 ms to send, 1371 ms to get response, and 1379 ms overall
17-03-17 21:33:21.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:21.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168402155680074. ------
17-03-17 21:33:22.088 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:22.088 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17483 mm
17-03-17 21:33:22.088 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:22.088 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:22.088 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:33:22.088 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:33:22.088 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38191, sync = True, waitForSettling = False)
17-03-17 21:33:22.088 -07 000000424 INF: Z Motor: Moving to -0.174827 mm, started at -0.168402 mm, distance = -6.43 um
17-03-17 21:33:22.098 -07 000000424 INF: FPGA: Xmit ZDACW 38191\n [Z Motor]
17-03-17 21:33:22.098 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:22.098 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:33:22.108 -07 000000424 INF: FPGA: 'ZDACW 38191' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:22.108 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:22.108 -07 000000608 INF: FPGA: Recv ZDACR 38191
17-03-17 21:33:22.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:22.118 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:22.118 -07 000000424 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:33:22.118 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:33:22.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:33:22.128 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:22.128 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:22.128 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:22.128 -07 000000627 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:33:22.138 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:22.178 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:33:22.178 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:33:22.178 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:22.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:33:22.178 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:33:22.178 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:22.178 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:22.178 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:33:22.178 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:33:22.188 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:33:22.328 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:22.328 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 21:33:22.508 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.005817,
17-03-17 21:33:22.508 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:33:22.508 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:33:22.548 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:22.558 -07 000000608 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:33:22.558 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:33:22.558 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:22.558 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:33:22.558 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-17 21:33:23.508 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:23.508 -07 000000576 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:33:23.518 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:23.518 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:23.538 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:23.538 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:23.538 -07 000000627 INF: Y Motor: Moved to 70.6880 after 1445 ms (table move)
17-03-17 21:33:23.538 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174827 mm (DAC = 38191)
17-03-17 21:33:23.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.548 -07 000000424 INF: FPGA: Recv ZSGSRD 36515
17-03-17 21:33:23.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:33:23.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36501
17-03-17 21:33:23.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:23.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.558 -07 000000547 INF: FPGA: Recv ZSGSRD 36502
17-03-17 21:33:23.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.568 -07 000000569 INF: FPGA: Recv ZSGSRD 36509
17-03-17 21:33:23.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.578 -07 000000608 INF: FPGA: Recv ZSGSRD 36502
17-03-17 21:33:23.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.588 -07 000000627 INF: FPGA: Recv ZSGSRD 36507
17-03-17 21:33:23.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.598 -07 000000476 INF: FPGA: Recv ZSGSRD 36504
17-03-17 21:33:23.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.608 -07 000000438 INF: FPGA: Recv ZSGSRD 36499
17-03-17 21:33:23.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.618 -07 000000424 INF: FPGA: Recv ZSGSRD 36498
17-03-17 21:33:23.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:23.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36501
17-03-17 21:33:23.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.638 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:23.638 -07 000000627 INF: FPGA: Recv ZPIEZORD 32816
17-03-17 21:33:23.648 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:23.648 -07 000000512 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.2 V.
17-03-17 21:33:23.648 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36504 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36502 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36498 (-173.9 uncal um), Max = 36515 (-174.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:23.648 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36504, posNoise = 11, negNoise = 6
17-03-17 21:33:23.648 -07 000000512 INF: Z Motor: After move to -0.174827, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:23.648 -07 000000512 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:33:23.648 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:23.698 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:33:23.698 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:23.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:23.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:23.698 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:23.698 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:23.698 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:23.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:23.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:23.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:23.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:23.708 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:23.708 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:33:23.708 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:33:23.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:23.758 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:23.958 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:23.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:23.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:23.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:23.998 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:23.998 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:23.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:33:24.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:33:24.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:24.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:33:24.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:33:24.098 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:24.098 -07 000000429 INF: Autofocus start
17-03-17 21:33:24.098 -07 000000429 INF: MeasureProfile start
17-03-17 21:33:24.098 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:24.108 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:33:24.108 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:24.118 -07 000000429 INF: MeasureProfile done
17-03-17 21:33:24.118 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:24.118 -07 000000429 INF: Autofocus finished
17-03-17 21:33:24.308 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:24.308 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:33:24.308 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174832792033977. ----------
17-03-17 21:33:24.318 -07 000000610 INF: Cycle	52	Tile	14	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:24.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36706, sync = True, waitForSettling = True)
17-03-17 21:33:24.318 -07 000000610 INF: Z Motor: Moving to -0.168029 mm, started at -0.174833 mm, distance = 6.80 um
17-03-17 21:33:24.318 -07 000000610 INF: FPGA: Xmit ZDACW 36706\n [Z Motor]
17-03-17 21:33:24.318 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:33:24.328 -07 000000610 INF: FPGA: 'ZDACW 36706' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:24.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:24.328 -07 000000501 INF: FPGA: Recv ZDACR 36706
17-03-17 21:33:24.338 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:24.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.488 -07 000000547 INF: FPGA: Recv ZSGSRD 35449
17-03-17 21:33:24.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:24.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.498 -07 000000012 INF: FPGA: Recv ZSGSRD 35449
17-03-17 21:33:24.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.508 -07 000000576 INF: FPGA: Recv ZSGSRD 35443
17-03-17 21:33:24.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35452
17-03-17 21:33:24.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35451
17-03-17 21:33:24.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.538 -07 000000475 INF: FPGA: Recv ZSGSRD 35453
17-03-17 21:33:24.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.548 -07 000000459 INF: FPGA: Recv ZSGSRD 35448
17-03-17 21:33:24.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.558 -07 000000480 INF: FPGA: Recv ZSGSRD 35448
17-03-17 21:33:24.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35449
17-03-17 21:33:24.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:24.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35442
17-03-17 21:33:24.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:24.588 -07 000000569 INF: FPGA: Recv ZPIEZORD 31370
17-03-17 21:33:24.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:24.598 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -9.0 V.
17-03-17 21:33:24.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35448 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35449 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35442 (-167.1 uncal um), Max = 35453 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:24.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35448, posNoise = 5, negNoise = 6
17-03-17 21:33:24.598 -07 000000610 INF: Z Motor: After move to -0.168029, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:24.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:33:24.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:24.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:24.598 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:24.598 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:24.598 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:24.598 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:24.598 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:24.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:24.598 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:24.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:24.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:33:24.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:24.598 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:24.598 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:24.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:33:24.608 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:24.618 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:33:24.618 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:33:24.618 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:33:24.618 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:33:24.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36883 150\n [Camera]
17-03-17 21:33:24.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:25.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:25.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:25.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:25.258 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:25.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:25.258 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:25.258 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:25.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:25.258 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:25.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:25.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36883 819
17-03-17 21:33:25.598 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:25.648 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:33:25.648 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:33:25.648 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:25.658 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:33:25.658 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:33:25.658 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:25.658 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:25.658 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:33:25.658 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:25.668 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:33:25.808 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:25.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:25.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:25.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:25.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:25.808 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:25.818 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:25.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:33:25.818 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:25.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:33:25.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:33:25.998 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:25.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36883 150' command took 2 ms to send, 1373 ms to get response, and 1379 ms overall
17-03-17 21:33:25.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:25.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168048824012277. ------
17-03-17 21:33:26.008 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:26.008 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17436 mm
17-03-17 21:33:26.008 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:26.008 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:26.008 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:33:26.008 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:33:26.008 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38090, sync = True, waitForSettling = False)
17-03-17 21:33:26.008 -07 000000626 INF: Z Motor: Moving to -0.174365 mm, started at -0.168049 mm, distance = -6.32 um
17-03-17 21:33:26.018 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:26.018 -07 000000626 INF: FPGA: Xmit ZDACW 38090\n [Z Motor]
17-03-17 21:33:26.018 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:33:26.028 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:26.028 -07 000000626 INF: FPGA: 'ZDACW 38090' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:33:26.028 -07 000000458 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:33:26.038 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:26.038 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:33:26.038 -07 000000569 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:26.038 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:26.038 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:33:26.048 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:26.048 -07 000000480 INF: FPGA: Recv ZDACR 38090
17-03-17 21:33:26.058 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:26.058 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:26.058 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 21:33:26.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:33:26.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:33:26.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:26.208 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:26.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:33:26.238 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:26.238 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:33:26.328 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:33:26.328 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 21:33:26.328 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:26.338 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:33:26.338 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 21:33:26.428 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:33:26.428 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:33:26.468 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:26.468 -07 000000475 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:33:26.478 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:26.478 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:26.478 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:33:26.478 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.155 mm/sec
17-03-17 21:33:26.888 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:26.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:27.428 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:27.428 -07 000000438 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:33:27.438 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:27.438 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:27.458 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:27.458 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:27.458 -07 000000569 INF: Y Motor: Moved to 71.5186 after 1449 ms (table move)
17-03-17 21:33:27.458 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174365 mm (DAC = 38090)
17-03-17 21:33:27.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.468 -07 000000480 INF: FPGA: Recv ZSGSRD 36438
17-03-17 21:33:27.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:33:27.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.468 -07 000000438 INF: FPGA: Recv ZSGSRD 36427
17-03-17 21:33:27.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.478 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36428
17-03-17 21:33:27.488 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.488 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.488 -07 000000547 INF: FPGA: Recv ZSGSRD 36435
17-03-17 21:33:27.498 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.498 -07 000000569 INF: FPGA: Recv ZSGSRD 36434
17-03-17 21:33:27.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.508 -07 000000475 INF: FPGA: Recv ZSGSRD 36437
17-03-17 21:33:27.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36432
17-03-17 21:33:27.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.528 -07 000000576 INF: FPGA: Recv ZSGSRD 36430
17-03-17 21:33:27.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.538 -07 000000512 INF: FPGA: Recv ZSGSRD 36428
17-03-17 21:33:27.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.558 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:27.558 -07 000000547 INF: FPGA: Recv ZSGSRD 36437
17-03-17 21:33:27.568 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:33:27.568 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:27.568 -07 000000438 INF: FPGA: Recv ZPIEZORD 32738
17-03-17 21:33:27.578 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:27.578 -07 000000608 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -8.2 V.
17-03-17 21:33:27.578 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36433 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36433 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36427 (-173.5 uncal um), Max = 36438 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:33:27.578 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36433, posNoise = 5, negNoise = 6
17-03-17 21:33:27.578 -07 000000608 INF: Z Motor: After move to -0.174365, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:27.578 -07 000000608 INF: Z Motor: Settle wait time = 1452 ms, measure time = 113 ms (allowed 150 ms), total time = 1565 ms
17-03-17 21:33:27.578 -07 000000608 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:27.618 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 21:33:27.618 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:27.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:27.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:27.618 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:27.618 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:27.618 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:27.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:27.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:27.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:27.618 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:27.618 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:27.638 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 21:33:27.638 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:33:27.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:27.688 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:27.868 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.997626,
17-03-17 21:33:27.888 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:27.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:27.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:27.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:27.928 -07 000000424 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:33:27.928 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:27.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 21:33:28.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:33:28.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:28.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:33:28.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:33:28.028 -07 000000012 INF: Autofocus start
17-03-17 21:33:28.028 -07 000000012 INF: MeasureProfile start
17-03-17 21:33:28.028 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:28.028 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:28.038 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:28.038 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:28.038 -07 000000012 INF: MeasureProfile done
17-03-17 21:33:28.038 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:28.038 -07 000000012 INF: Autofocus finished
17-03-17 21:33:28.238 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:28.238 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:28.238 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174376672971912. ----------
17-03-17 21:33:28.238 -07 000000610 INF: Cycle	52	Tile	15	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:28.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36605, sync = True, waitForSettling = True)
17-03-17 21:33:28.248 -07 000000610 INF: Z Motor: Moving to -0.167567 mm, started at -0.174377 mm, distance = 6.81 um
17-03-17 21:33:28.248 -07 000000610 INF: FPGA: Xmit ZDACW 36605\n [Z Motor]
17-03-17 21:33:28.248 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:33:28.258 -07 000000610 INF: FPGA: 'ZDACW 36605' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:28.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:28.258 -07 000000626 INF: FPGA: Recv ZDACR 36605
17-03-17 21:33:28.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:28.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.418 -07 000000501 INF: FPGA: Recv ZSGSRD 35373
17-03-17 21:33:28.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:28.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.428 -07 000000576 INF: FPGA: Recv ZSGSRD 35375
17-03-17 21:33:28.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.438 -07 000000415 INF: FPGA: Recv ZSGSRD 35372
17-03-17 21:33:28.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35371
17-03-17 21:33:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35374
17-03-17 21:33:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.468 -07 000000431 INF: FPGA: Recv ZSGSRD 35372
17-03-17 21:33:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.478 -07 000000569 INF: FPGA: Recv ZSGSRD 35377
17-03-17 21:33:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.488 -07 000000512 INF: FPGA: Recv ZSGSRD 35375
17-03-17 21:33:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35373
17-03-17 21:33:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:28.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35372
17-03-17 21:33:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:28.518 -07 000000501 INF: FPGA: Recv ZPIEZORD 31327
17-03-17 21:33:28.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:28.528 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -8.9 V.
17-03-17 21:33:28.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35373 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35373 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35371 (-166.7 uncal um), Max = 35377 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:33:28.528 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35373, posNoise = 4, negNoise = 2
17-03-17 21:33:28.528 -07 000000610 INF: Z Motor: After move to -0.167567, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:28.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:33:28.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:28.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:28.528 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:28.528 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:28.528 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:28.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:28.528 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:28.528 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:28.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:33:28.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:28.528 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:33:28.528 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:28.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:28.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:28.538 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:28.538 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:28.548 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:33:28.548 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:28.548 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:33:28.548 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:28.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36782 150\n [Camera]
17-03-17 21:33:28.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:29.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629
17-03-17 21:33:29.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629
17-03-17 21:33:29.188 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:29.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629
17-03-17 21:33:29.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629
17-03-17 21:33:29.188 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:29.188 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:29.188 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:29.188 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:29.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:29.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36782 819
17-03-17 21:33:29.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:29.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:33:29.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:33:29.568 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:29.568 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:33:29.568 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:33:29.568 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:29.568 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:29.568 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:29.568 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:33:29.578 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:33:29.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:29.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:29.738 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:29.738 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:29.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:33:29.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:29.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:29.738 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:29.738 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:29.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:33:29.928 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1373
17-03-17 21:33:29.928 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:29.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36782 150' command took 2 ms to send, 1374 ms to get response, and 1380 ms overall
17-03-17 21:33:29.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:29.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167567008101645. ------
17-03-17 21:33:29.928 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:29.928 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17396 mm
17-03-17 21:33:29.928 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:29.938 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:33:29.938 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:33:29.938 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:29.938 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:33:29.938 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:29.938 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38002, sync = True, waitForSettling = False)
17-03-17 21:33:29.938 -07 000000012 INF: Z Motor: Moving to -0.173962 mm, started at -0.167567 mm, distance = -6.39 um
17-03-17 21:33:29.938 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:33:29.948 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:29.948 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:29.948 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:29.948 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:33:29.948 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:29.958 -07 000000012 INF: FPGA: Xmit ZDACW 38002\n [Z Motor]
17-03-17 21:33:29.958 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:33:29.968 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:29.968 -07 000000012 INF: FPGA: 'ZDACW 38002' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:33:29.978 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:29.978 -07 000000501 INF: FPGA: Recv ZDACR 38002
17-03-17 21:33:29.988 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:29.988 -07 000000012 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:33:30.118 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:33:30.118 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:33:30.118 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:30.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:33:30.118 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:33:30.118 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:30.118 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:30.128 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:33:30.128 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:33:30.128 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:33:30.148 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:30.148 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 21:33:30.338 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:33:30.338 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:33:30.378 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:30.378 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:33:30.388 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:33:30.388 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:30.388 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:33:30.388 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 21:33:31.338 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:31.338 -07 000000475 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:33:31.348 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:31.348 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:31.368 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:31.368 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:31.368 -07 000000424 INF: Y Motor: Moved to 72.3491 after 1432 ms (table move)
17-03-17 21:33:31.368 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173962 mm (DAC = 38002)
17-03-17 21:33:31.368 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36368
17-03-17 21:33:31.378 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:33:31.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.378 -07 000000382 INF: FPGA: Recv ZSGSRD 36374
17-03-17 21:33:31.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.388 -07 000000012 INF: FPGA: Recv ZSGSRD 36367
17-03-17 21:33:31.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.398 -07 000000569 INF: FPGA: Recv ZSGSRD 36375
17-03-17 21:33:31.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.408 -07 000000431 INF: FPGA: Recv ZSGSRD 36377
17-03-17 21:33:31.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.418 -07 000000626 INF: FPGA: Recv ZSGSRD 36361
17-03-17 21:33:31.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.428 -07 000000512 INF: FPGA: Recv ZSGSRD 36372
17-03-17 21:33:31.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.438 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.438 -07 000000458 INF: FPGA: Recv ZSGSRD 36366
17-03-17 21:33:31.448 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.448 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.448 -07 000000547 INF: FPGA: Recv ZSGSRD 36371
17-03-17 21:33:31.458 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.458 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:31.458 -07 000000012 INF: FPGA: Recv ZSGSRD 36365
17-03-17 21:33:31.468 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.468 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:31.468 -07 000000547 INF: FPGA: Recv ZPIEZORD 32671
17-03-17 21:33:31.478 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:31.478 -07 000000576 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.2 V.
17-03-17 21:33:31.478 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36370 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36370 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36361 (-173.0 uncal um), Max = 36377 (-173.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:33:31.478 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36370, posNoise = 7, negNoise = 9
17-03-17 21:33:31.478 -07 000000576 INF: Z Motor: After move to -0.173962, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:31.478 -07 000000576 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:33:31.478 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:31.528 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:33:31.528 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:31.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:31.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:31.528 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:31.528 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:31.528 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:31.528 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:31.528 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:33:31.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:31.538 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:31.538 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:31.538 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:33:31.538 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:33:31.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:31.588 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:31.788 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:31.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:31.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:31.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:33:31.828 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:31.828 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:31.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:33:31.888 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:31.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:33:31.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:31.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:31.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:33:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:31.928 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:31.928 -07 000000501 INF: Autofocus start
17-03-17 21:33:31.928 -07 000000501 INF: MeasureProfile start
17-03-17 21:33:31.928 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:31.938 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 21:33:31.938 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:31.938 -07 000000501 INF: MeasureProfile done
17-03-17 21:33:31.938 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:33:31.938 -07 000000501 INF: Autofocus finished
17-03-17 21:33:32.138 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:32.138 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:33:32.138 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173971947606981. ----------
17-03-17 21:33:32.138 -07 000000610 INF: Cycle	52	Tile	16	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:32.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36498, sync = True, waitForSettling = True)
17-03-17 21:33:32.148 -07 000000610 INF: Z Motor: Moving to -0.167077 mm, started at -0.173972 mm, distance = 6.89 um
17-03-17 21:33:32.148 -07 000000610 INF: FPGA: Xmit ZDACW 36498\n [Z Motor]
17-03-17 21:33:32.148 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:33:32.158 -07 000000610 INF: FPGA: 'ZDACW 36498' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:32.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:32.158 -07 000000415 INF: FPGA: Recv ZDACR 36498
17-03-17 21:33:32.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:32.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.318 -07 000000382 INF: FPGA: Recv ZSGSRD 35299
17-03-17 21:33:32.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:32.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35299
17-03-17 21:33:32.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.338 -07 000000576 INF: FPGA: Recv ZSGSRD 35293
17-03-17 21:33:32.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.348 -07 000000429 INF: FPGA: Recv ZSGSRD 35298
17-03-17 21:33:32.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.358 -07 000000547 INF: FPGA: Recv ZSGSRD 35297
17-03-17 21:33:32.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.368 -07 000000475 INF: FPGA: Recv ZSGSRD 35299
17-03-17 21:33:32.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35298
17-03-17 21:33:32.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35294
17-03-17 21:33:32.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.398 -07 000000459 INF: FPGA: Recv ZSGSRD 35300
17-03-17 21:33:32.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:32.408 -07 000000512 INF: FPGA: Recv ZSGSRD 35295
17-03-17 21:33:32.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:32.418 -07 000000382 INF: FPGA: Recv ZPIEZORD 31210
17-03-17 21:33:32.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:32.428 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.0 V.
17-03-17 21:33:32.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35297 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35298 (-166.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35293 (-166.2 uncal um), Max = 35300 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:33:32.428 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35297, posNoise = 3, negNoise = 4
17-03-17 21:33:32.428 -07 000000610 INF: Z Motor: After move to -0.167077, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:32.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:33:32.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:32.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:32.428 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:32.428 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:32.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:32.428 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:32.428 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:32.428 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:32.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:33:32.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:32.428 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:32.428 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:32.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:32.428 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:32.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:32.438 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:32.438 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:33:32.438 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:32.448 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:33:32.448 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:32.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36675 150\n [Camera]
17-03-17 21:33:32.648 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:33.078 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:33.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:33.078 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:33.078 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:33.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:33:33.088 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:33.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:33.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:33.088 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:33.088 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:33:33.238 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.024884,
17-03-17 21:33:33.268 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36675 819
17-03-17 21:33:33.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:33.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:33:33.468 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:33:33.468 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:33.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:33:33.468 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:33:33.468 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:33.478 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:33.478 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:33:33.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:33.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:33:33.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:33.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:33.628 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:33.628 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:33.628 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:33:33.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:33.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:33.638 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:33.638 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:33.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:33:33.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:33:33.818 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:33.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36675 150' command took 2 ms to send, 1369 ms to get response, and 1377 ms overall
17-03-17 21:33:33.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:33.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167078767978871. ------
17-03-17 21:33:33.828 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:33.828 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17358 mm
17-03-17 21:33:33.828 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:33.828 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:33:33.828 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:33:33.828 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37919, sync = True, waitForSettling = False)
17-03-17 21:33:33.948 -07 000000476 INF: Z Motor: Moving to -0.173582 mm, started at -0.167079 mm, distance = -6.50 um
17-03-17 21:33:33.948 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:33.948 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:33.948 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 123 ms overall
17-03-17 21:33:33.958 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:33.958 -07 000000458 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:33:33.958 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 122 ms overall
17-03-17 21:33:33.958 -07 000000512 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:33.958 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:33.958 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:33:33.968 -07 000000476 INF: FPGA: Xmit ZDACW 37919\n [Z Motor]
17-03-17 21:33:33.968 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:33:33.978 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:33.978 -07 000000476 INF: FPGA: 'ZDACW 37919' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:33:33.988 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:33.988 -07 000000415 INF: FPGA: Recv ZDACR 37919
17-03-17 21:33:33.998 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:33.998 -07 000000476 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:33:34.038 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:33:34.038 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:33:34.038 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:34.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:33:34.038 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:33:34.038 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:34.048 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:34.048 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:33:34.048 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:33:34.048 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:33:34.158 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:34.158 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-17 21:33:34.348 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:33:34.348 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 21:33:34.388 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:34.388 -07 000000475 INF: FPGA: Recv YRDPOS 149863
17-03-17 21:33:34.398 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:34.398 -07 000000512 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:34.398 -07 000000512 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 21:33:34.398 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.130 mm/sec
17-03-17 21:33:35.348 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:35.348 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:33:35.358 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.358 -07 000000512 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:35.378 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:35.378 -07 000000512 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:33:35.378 -07 000000512 INF: Y Motor: Moved to 73.1758 after 1545 ms (table move)
17-03-17 21:33:35.378 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173582 mm (DAC = 37919)
17-03-17 21:33:35.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.388 -07 000000476 INF: FPGA: Recv ZSGSRD 36317
17-03-17 21:33:35.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:33:35.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.388 -07 000000382 INF: FPGA: Recv ZSGSRD 36312
17-03-17 21:33:35.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:35.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.398 -07 000000458 INF: FPGA: Recv ZSGSRD 36307
17-03-17 21:33:35.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.408 -07 000000501 INF: FPGA: Recv ZSGSRD 36311
17-03-17 21:33:35.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.418 -07 000000438 INF: FPGA: Recv ZSGSRD 36309
17-03-17 21:33:35.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.428 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.428 -07 000000459 INF: FPGA: Recv ZSGSRD 36316
17-03-17 21:33:35.438 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.438 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.438 -07 000000382 INF: FPGA: Recv ZSGSRD 36313
17-03-17 21:33:35.448 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.448 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36318
17-03-17 21:33:35.458 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.458 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.458 -07 000000458 INF: FPGA: Recv ZSGSRD 36304
17-03-17 21:33:35.468 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:35.468 -07 000000501 INF: FPGA: Recv ZSGSRD 36305
17-03-17 21:33:35.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.478 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:35.478 -07 000000547 INF: FPGA: Recv ZPIEZORD 32573
17-03-17 21:33:35.488 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:35.488 -07 000000608 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.786 V. Piezo Error = -8.3 V.
17-03-17 21:33:35.488 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36311 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36312 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36304 (-172.7 uncal um), Max = 36318 (-172.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:33:35.488 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36311, posNoise = 7, negNoise = 7
17-03-17 21:33:35.488 -07 000000608 INF: Z Motor: After move to -0.173582, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:35.488 -07 000000608 INF: Z Motor: Settle wait time = 1429 ms, measure time = 103 ms (allowed 150 ms), total time = 1532 ms
17-03-17 21:33:35.488 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:35.538 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 21:33:35.538 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:35.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:35.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:35.538 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:35.538 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:35.538 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:35.538 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:35.538 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:35.538 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:35.548 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:35.548 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:35.558 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:33:35.558 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:33:35.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:35.608 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:35.808 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:35.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:35.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:35.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:35.848 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:35.848 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:35.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:33:35.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:33:35.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:35.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:35.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:33:35.948 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:35.948 -07 000000476 INF: Autofocus start
17-03-17 21:33:35.948 -07 000000476 INF: MeasureProfile start
17-03-17 21:33:35.948 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:35.958 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:35.958 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:35.958 -07 000000476 INF: MeasureProfile done
17-03-17 21:33:35.958 -07 000000476 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:33:35.958 -07 000000476 INF: Autofocus finished
17-03-17 21:33:36.158 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:36.158 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:36.158 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173592919090617. ----------
17-03-17 21:33:36.158 -07 000000610 INF: Cycle	52	Tile	17	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:36.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36416, sync = True, waitForSettling = True)
17-03-17 21:33:36.168 -07 000000610 INF: Z Motor: Moving to -0.166702 mm, started at -0.173593 mm, distance = 6.89 um
17-03-17 21:33:36.168 -07 000000610 INF: FPGA: Xmit ZDACW 36416\n [Z Motor]
17-03-17 21:33:36.168 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:33:36.178 -07 000000610 INF: FPGA: 'ZDACW 36416' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:36.178 -07 000000608 INF: FPGA: Recv ZDACR 36416
17-03-17 21:33:36.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35236
17-03-17 21:33:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:36.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35242
17-03-17 21:33:36.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35243
17-03-17 21:33:36.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.368 -07 000000424 INF: FPGA: Recv ZSGSRD 35239
17-03-17 21:33:36.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.378 -07 000000501 INF: FPGA: Recv ZSGSRD 35246
17-03-17 21:33:36.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35236
17-03-17 21:33:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.398 -07 000000480 INF: FPGA: Recv ZSGSRD 35241
17-03-17 21:33:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.408 -07 000000512 INF: FPGA: Recv ZSGSRD 35242
17-03-17 21:33:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.418 -07 000000576 INF: FPGA: Recv ZSGSRD 35237
17-03-17 21:33:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:36.428 -07 000000608 INF: FPGA: Recv ZSGSRD 35239
17-03-17 21:33:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:36.438 -07 000000627 INF: FPGA: Recv ZPIEZORD 31157
17-03-17 21:33:36.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:36.448 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.0 V.
17-03-17 21:33:36.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35240 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35240 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35236 (-165.8 uncal um), Max = 35246 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:33:36.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35240, posNoise = 6, negNoise = 4
17-03-17 21:33:36.448 -07 000000610 INF: Z Motor: After move to -0.166702, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:36.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:33:36.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:36.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:36.448 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:36.448 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:36.448 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:36.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:36.448 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:36.448 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:36.448 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:33:36.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:36.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:33:36.448 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:36.458 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:36.458 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:36.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:36.458 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:36.468 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:33:36.468 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:36.468 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:33:36.468 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:33:36.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36592 150\n [Camera]
17-03-17 21:33:36.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:36.888 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:36.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:37.098 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:37.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:37.098 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:37.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:37.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:37.108 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:37.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:37.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:37.108 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:37.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:37.288 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36592 819
17-03-17 21:33:37.438 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:37.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:33:37.478 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:33:37.478 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:37.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:33:37.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:33:37.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:37.488 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:37.488 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:37.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:33:37.498 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:33:37.648 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:37.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:37.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:37.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:37.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:37.658 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:37.668 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:37.668 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:33:37.668 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:37.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:33:37.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:33:37.848 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:37.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36592 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-17 21:33:37.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:37.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166712587886791. ------
17-03-17 21:33:37.848 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:37.848 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17306 mm
17-03-17 21:33:37.848 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:37.848 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:33:37.848 -07 000000476 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:33:37.848 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:37.848 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37805, sync = True, waitForSettling = False)
17-03-17 21:33:37.848 -07 000000459 INF: Z Motor: Moving to -0.173060 mm, started at -0.166713 mm, distance = -6.35 um
17-03-17 21:33:37.858 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:37.858 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:37.858 -07 000000012 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:33:37.868 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:33:37.868 -07 000000476 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:37.868 -07 000000476 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:37.978 -07 000000476 INF: Y Motor: Moving 1355 steps-35
17-03-17 21:33:37.978 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:37.988 -07 000000459 INF: FPGA: Xmit ZDACW 37805\n [Z Motor]
17-03-17 21:33:37.988 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:33:37.998 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:37.998 -07 000000459 INF: FPGA: 'ZDACW 37805' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-17 21:33:38.008 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:38.008 -07 000000429 INF: FPGA: Recv ZDACR 37805
17-03-17 21:33:38.018 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:38.018 -07 000000459 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-17 21:33:38.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:33:38.058 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:33:38.058 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:38.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:33:38.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:33:38.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:38.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:33:38.068 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:33:38.068 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:33:38.068 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:33:38.188 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:38.188 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 116 ms to send, 200 ms to get response, and 330 ms overall
17-03-17 21:33:38.368 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:33:38.368 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:33:38.398 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:38.408 -07 000000480 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:33:38.408 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:33:38.408 -07 000000476 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:38.408 -07 000000476 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:33:38.408 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.847 mm, average velocity = 2.160 mm/sec
17-03-17 21:33:38.608 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471,
17-03-17 21:33:39.358 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:39.358 -07 000000480 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:33:39.368 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:39.368 -07 000000476 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:39.378 -07 000000476 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:39.378 -07 000000476 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:33:39.378 -07 000000476 INF: Y Motor: Moved to 74.0078 after 1529 ms (table move)
17-03-17 21:33:39.388 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173060 mm (DAC = 37805)
17-03-17 21:33:39.388 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.388 -07 000000480 INF: FPGA: Recv ZSGSRD 36234
17-03-17 21:33:39.398 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:39.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.398 -07 000000431 INF: FPGA: Recv ZSGSRD 36223
17-03-17 21:33:39.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.408 -07 000000415 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:33:39.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.418 -07 000000424 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:33:39.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:33:39.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.438 -07 000000415 INF: FPGA: Recv ZSGSRD 36237
17-03-17 21:33:39.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.448 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.448 -07 000000475 INF: FPGA: Recv ZSGSRD 36221
17-03-17 21:33:39.458 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.458 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.458 -07 000000431 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:33:39.468 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.468 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.468 -07 000000382 INF: FPGA: Recv ZSGSRD 36227
17-03-17 21:33:39.478 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.478 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:39.478 -07 000000438 INF: FPGA: Recv ZSGSRD 36235
17-03-17 21:33:39.488 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.488 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:39.488 -07 000000459 INF: FPGA: Recv ZPIEZORD 32531
17-03-17 21:33:39.498 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:39.498 -07 000000569 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.2 V.
17-03-17 21:33:39.498 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36230 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36230 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36221 (-172.1 uncal um), Max = 36237 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:33:39.498 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36230, posNoise = 7, negNoise = 9
17-03-17 21:33:39.498 -07 000000569 INF: Z Motor: After move to -0.173060, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:39.498 -07 000000569 INF: Z Motor: Settle wait time = 1531 ms, measure time = 110 ms (allowed 150 ms), total time = 1641 ms
17-03-17 21:33:39.498 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:39.538 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1684 ms
17-03-17 21:33:39.538 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:39.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:39.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:39.538 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:39.538 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:39.538 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:39.538 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:39.538 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:33:39.538 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:39.548 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 21:33:39.548 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:39.558 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:33:39.558 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:33:39.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:39.608 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:39.808 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:39.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:39.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:39.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:39.848 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:39.848 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:39.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 21:33:39.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:33:39.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:39.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:39.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:33:39.948 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:39.948 -07 000000012 INF: Autofocus start
17-03-17 21:33:39.948 -07 000000012 INF: MeasureProfile start
17-03-17 21:33:39.948 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:39.958 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:39.958 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:39.958 -07 000000012 INF: MeasureProfile done
17-03-17 21:33:39.958 -07 000000012 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:39.958 -07 000000012 INF: Autofocus finished
17-03-17 21:33:40.158 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:40.158 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:40.158 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173072557907134. ----------
17-03-17 21:33:40.158 -07 000000610 INF: Cycle	52	Tile	18	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:40.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36319, sync = True, waitForSettling = True)
17-03-17 21:33:40.168 -07 000000610 INF: Z Motor: Moving to -0.166258 mm, started at -0.173073 mm, distance = 6.81 um
17-03-17 21:33:40.168 -07 000000610 INF: FPGA: Xmit ZDACW 36319\n [Z Motor]
17-03-17 21:33:40.168 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:33:40.178 -07 000000610 INF: FPGA: 'ZDACW 36319' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:40.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:40.178 -07 000000475 INF: FPGA: Recv ZDACR 36319
17-03-17 21:33:40.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:40.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.338 -07 000000569 INF: FPGA: Recv ZSGSRD 35170
17-03-17 21:33:40.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.348 -07 000000424 INF: FPGA: Recv ZSGSRD 35171
17-03-17 21:33:40.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.358 -07 000000576 INF: FPGA: Recv ZSGSRD 35173
17-03-17 21:33:40.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.368 -07 000000476 INF: FPGA: Recv ZSGSRD 35171
17-03-17 21:33:40.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.378 -07 000000475 INF: FPGA: Recv ZSGSRD 35171
17-03-17 21:33:40.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.388 -07 000000608 INF: FPGA: Recv ZSGSRD 35171
17-03-17 21:33:40.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.398 -07 000000459 INF: FPGA: Recv ZSGSRD 35171
17-03-17 21:33:40.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.408 -07 000000627 INF: FPGA: Recv ZSGSRD 35170
17-03-17 21:33:40.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.418 -07 000000480 INF: FPGA: Recv ZSGSRD 35170
17-03-17 21:33:40.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:40.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35169
17-03-17 21:33:40.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:40.438 -07 000000569 INF: FPGA: Recv ZPIEZORD 31121
17-03-17 21:33:40.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:40.448 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -8.9 V.
17-03-17 21:33:40.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35171 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35171 (-165.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35169 (-165.4 uncal um), Max = 35173 (-165.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:33:40.448 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35171, posNoise = 2, negNoise = 2
17-03-17 21:33:40.448 -07 000000610 INF: Z Motor: After move to -0.166258, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:40.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:33:40.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:40.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:40.448 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:40.448 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:40.448 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:40.448 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:40.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:40.448 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:40.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:33:40.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:40.448 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:40.448 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:40.458 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:40.458 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:40.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:33:40.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:40.468 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:33:40.468 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:33:40.468 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:33:40.468 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:33:40.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36496 150\n [Camera]
17-03-17 21:33:40.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:41.108 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:41.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:41.108 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:41.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:41.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:41.108 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:41.108 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:41.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:41.108 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:41.108 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:41.298 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36496 819
17-03-17 21:33:41.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:41.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:33:41.488 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:33:41.488 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:41.488 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:33:41.488 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:33:41.488 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:41.498 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:33:41.498 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:33:41.498 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:41.498 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:33:41.658 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:41.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:41.658 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:41.658 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:41.658 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:33:41.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:41.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:41.658 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:41.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:41.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:33:41.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:33:41.848 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:41.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36496 150' command took 2 ms to send, 1374 ms to get response, and 1377 ms overall
17-03-17 21:33:41.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:33:41.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.16626931724901. ------
17-03-17 21:33:41.848 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:41.848 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17271 mm
17-03-17 21:33:41.848 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:41.858 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:41.858 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:33:41.858 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:41.858 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:33:41.858 -07 000000431 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:33:41.858 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 37729, sync = True, waitForSettling = False)
17-03-17 21:33:41.858 -07 000000458 INF: Z Motor: Moving to -0.172712 mm, started at -0.166269 mm, distance = -6.44 um
17-03-17 21:33:41.868 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:41.868 -07 000000480 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:33:41.878 -07 000000458 INF: FPGA: Xmit ZDACW 37729\n [Z Motor]
17-03-17 21:33:41.878 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:33:41.878 -07 000000431 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:41.878 -07 000000431 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:41.878 -07 000000431 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:33:41.878 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:33:41.888 -07 000000458 INF: FPGA: 'ZDACW 37729' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:33:41.888 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:41.888 -07 000000012 INF: FPGA: Recv ZDACR 37729
17-03-17 21:33:41.888 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:41.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:41.898 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:41.898 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:41.898 -07 000000458 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:33:42.058 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:42.058 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 21:33:42.058 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:33:42.058 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:33:42.058 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:42.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:33:42.058 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:33:42.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:42.068 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:42.068 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:33:42.068 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:33:42.068 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:33:42.268 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:33:42.268 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:33:42.298 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:42.298 -07 000000608 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:33:42.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:42.308 -07 000000431 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:42.308 -07 000000431 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:33:42.308 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 21:33:43.258 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:43.258 -07 000000415 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:33:43.268 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:43.268 -07 000000431 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:43.278 -07 000000431 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:43.278 -07 000000431 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:43.278 -07 000000431 INF: Y Motor: Moved to 74.8315 after 1422 ms (table move)
17-03-17 21:33:43.288 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172712 mm (DAC = 37729)
17-03-17 21:33:43.288 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36185
17-03-17 21:33:43.298 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:43.298 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36168
17-03-17 21:33:43.308 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.308 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36172
17-03-17 21:33:43.318 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.318 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:33:43.328 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.328 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36172
17-03-17 21:33:43.338 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.338 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.338 -07 000000627 INF: FPGA: Recv ZSGSRD 36180
17-03-17 21:33:43.348 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.348 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:33:43.358 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.358 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.358 -07 000000431 INF: FPGA: Recv ZSGSRD 36178
17-03-17 21:33:43.368 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.368 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36166
17-03-17 21:33:43.378 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.378 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:43.378 -07 000000415 INF: FPGA: Recv ZSGSRD 36169
17-03-17 21:33:43.388 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.388 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:43.388 -07 000000382 INF: FPGA: Recv ZPIEZORD 32452
17-03-17 21:33:43.398 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:43.398 -07 000000438 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.2 V.
17-03-17 21:33:43.398 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36175 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36175 (-171.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36166 (-171.8 uncal um), Max = 36185 (-171.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:33:43.398 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36175, posNoise = 10, negNoise = 9
17-03-17 21:33:43.398 -07 000000438 INF: Z Motor: After move to -0.172712, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:43.398 -07 000000438 INF: Z Motor: Settle wait time = 1427 ms, measure time = 109 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:33:43.398 -07 000000438 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:43.448 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:33:43.448 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:43.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:43.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:43.448 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:43.448 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:43.448 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:43.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:43.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:43.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:43.458 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:43.458 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:43.458 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:33:43.458 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:33:43.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:43.508 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:43.708 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:43.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:43.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:43.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) start.
17-03-17 21:33:43.748 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:43.748 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:43.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:33:43.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 594000200, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:33:43.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:43.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:33:43.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:33:43.848 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:43.848 -07 000000501 INF: Autofocus start
17-03-17 21:33:43.848 -07 000000501 INF: MeasureProfile start
17-03-17 21:33:43.848 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:43.858 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:43.858 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:43.858 -07 000000501 INF: MeasureProfile done
17-03-17 21:33:43.858 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:33:43.858 -07 000000501 INF: Autofocus finished
17-03-17 21:33:43.988 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.977204,
17-03-17 21:33:44.058 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:44.058 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:44.058 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172719226239338. ----------
17-03-17 21:33:44.068 -07 000000610 INF: Cycle	52	Tile	19	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:44.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36244, sync = True, waitForSettling = True)
17-03-17 21:33:44.068 -07 000000610 INF: Z Motor: Moving to -0.165914 mm, started at -0.172719 mm, distance = 6.80 um
17-03-17 21:33:44.068 -07 000000610 INF: FPGA: Xmit ZDACW 36244\n [Z Motor]
17-03-17 21:33:44.068 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:33:44.078 -07 000000610 INF: FPGA: 'ZDACW 36244' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:44.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:44.078 -07 000000608 INF: FPGA: Recv ZDACR 36244
17-03-17 21:33:44.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:44.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35118
17-03-17 21:33:44.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:44.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.248 -07 000000382 INF: FPGA: Recv ZSGSRD 35124
17-03-17 21:33:44.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.258 -07 000000459 INF: FPGA: Recv ZSGSRD 35115
17-03-17 21:33:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.268 -07 000000424 INF: FPGA: Recv ZSGSRD 35109
17-03-17 21:33:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.278 -07 000000458 INF: FPGA: Recv ZSGSRD 35121
17-03-17 21:33:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.298 -07 000000012 INF: FPGA: Recv ZSGSRD 35117
17-03-17 21:33:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:44.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.318 -07 000000576 INF: FPGA: Recv ZSGSRD 35117
17-03-17 21:33:44.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:44.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.338 -07 000000458 INF: FPGA: Recv ZSGSRD 35119
17-03-17 21:33:44.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:44.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.368 -07 000000547 INF: FPGA: Recv ZSGSRD 35115
17-03-17 21:33:44.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:44.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:44.378 -07 000000431 INF: FPGA: Recv ZSGSRD 35122
17-03-17 21:33:44.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:44.388 -07 000000424 INF: FPGA: Recv ZPIEZORD 31063
17-03-17 21:33:44.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:44.398 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -8.9 V.
17-03-17 21:33:44.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35118 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35118 (-165.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35109 (-165.0 uncal um), Max = 35124 (-165.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:33:44.398 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35118, posNoise = 6, negNoise = 9
17-03-17 21:33:44.398 -07 000000610 INF: Z Motor: After move to -0.165914, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:44.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 21:33:44.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:44.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:44.398 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:44.398 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:44.398 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:44.398 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:44.398 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:44.398 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:44.398 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:33:44.398 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:44.398 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:33:44.398 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:44.408 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:44.408 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:44.408 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 21:33:44.408 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:44.418 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:33:44.418 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:33:44.418 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:33:44.418 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:33:44.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 36420 150\n [Camera]
17-03-17 21:33:44.628 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:45.058 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:45.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:45.058 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:45.058 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:45.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:33:45.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:45.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:45.058 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:45.058 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:45.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:33:45.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36420 819
17-03-17 21:33:45.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:45.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:33:45.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:33:45.458 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:45.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:33:45.458 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:33:45.458 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:45.468 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:45.468 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:33:45.468 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:45.468 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:33:45.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:45.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:45.608 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:45.608 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:45.608 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:33:45.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:45.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:45.618 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:45.618 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:45.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:33:45.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:33:45.798 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:45.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 36420 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-17 21:33:46.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:33:46.018 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:33:46.018 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:46.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 21:33:46.018 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:33:46.018 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:46.018 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:46.028 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:33:46.028 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:33:46.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:33:46.028 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:33:46.158 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 131 ms.
17-03-17 21:33:46.158 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:33:46.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:33:46.198 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:33:46.198 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:33:46.198 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 21:33:46.208 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:33:46.208 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:33:46.708 -07 000000438 INF: FPGA: Recv EMIN
17-03-17 21:33:46.708 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:33:46.708 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:33:46.708 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 21:33:46.718 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:46.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:33:46.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165928834005496. ------
17-03-17 21:33:46.718 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:46.718 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14043 mm
17-03-17 21:33:46.718 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:46.718 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:46.718 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:33:46.718 -07 000000415 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:33:46.728 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:46.728 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:33:46.728 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30676, sync = True, waitForSettling = False)
17-03-17 21:33:46.728 -07 000000608 INF: Z Motor: Moving to -0.140426 mm, started at -0.165929 mm, distance = 25.50 um
17-03-17 21:33:46.728 -07 000000627 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:33:46.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:46.738 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:46.738 -07 000000415 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:46.738 -07 000000415 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:33:46.738 -07 000000415 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:33:46.748 -07 000000608 INF: FPGA: Xmit ZDACW 30676\n [Z Motor]
17-03-17 21:33:46.748 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:33:46.758 -07 000000608 INF: FPGA: 'ZDACW 30676' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:33:46.758 -07 000000415 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:33:46.768 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:46.768 -07 000000012 INF: FPGA: Recv ZDACR 30676
17-03-17 21:33:46.778 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:46.778 -07 000000608 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:33:46.888 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:46.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:46.938 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:46.938 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:33:48.378 -07 000000382 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:33:48.378 -07 000000415 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-17 21:33:48.378 -07 000000415 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:33:48.378 -07 000000415 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:33:48.378 -07 000000415 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-17 21:33:49.348 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.000345,
17-03-17 21:33:51.228 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:51.228 -07 000000012 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:33:51.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:51.238 -07 000000415 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:51.268 -07 000000415 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:51.268 -07 000000415 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 21:33:51.268 -07 000000415 INF: Y Motor: Moved to 59.9111 after 4542 ms
17-03-17 21:33:51.268 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140426 mm (DAC = 30676)
17-03-17 21:33:51.268 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.268 -07 000000576 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:33:51.278 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:51.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.278 -07 000000569 INF: FPGA: Recv ZSGSRD 31144
17-03-17 21:33:51.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.288 -07 000000480 INF: FPGA: Recv ZSGSRD 31148
17-03-17 21:33:51.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.298 -07 000000382 INF: FPGA: Recv ZSGSRD 31149
17-03-17 21:33:51.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.308 -07 000000438 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:33:51.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:51.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.318 -07 000000459 INF: FPGA: Recv ZSGSRD 31149
17-03-17 21:33:51.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.328 -07 000000480 INF: FPGA: Recv ZSGSRD 31148
17-03-17 21:33:51.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.338 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.338 -07 000000569 INF: FPGA: Recv ZSGSRD 31149
17-03-17 21:33:51.348 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.348 -07 000000576 INF: FPGA: Recv ZSGSRD 31142
17-03-17 21:33:51.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:51.358 -07 000000512 INF: FPGA: Recv ZSGSRD 31151
17-03-17 21:33:51.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.368 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:51.368 -07 000000626 INF: FPGA: Recv ZPIEZORD 26852
17-03-17 21:33:51.378 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:51.378 -07 000000424 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.681 V. Piezo Error = -9.4 V.
17-03-17 21:33:51.378 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31149 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31149 (-139.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31142 (-139.6 uncal um), Max = 31154 (-139.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:33:51.378 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31149, posNoise = 5, negNoise = 7
17-03-17 21:33:51.378 -07 000000424 INF: Z Motor: After move to -0.140426, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:51.378 -07 000000424 INF: Z Motor: Settle wait time = 4543 ms, measure time = 106 ms (allowed 150 ms), total time = 4649 ms
17-03-17 21:33:51.378 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:51.428 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4705 ms
17-03-17 21:33:51.428 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:51.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:51.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:51.428 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:51.428 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:51.428 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:51.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:51.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:33:51.428 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:33:51.458 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:33:51.458 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:51.458 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:33:51.458 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:51.478 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:33:51.478 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 21:33:51.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:51.518 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:51.718 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:51.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:51.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:51.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:51.758 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:51.758 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:51.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:33:51.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:33:51.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:51.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:51.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:33:51.888 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:51.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:51.958 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:51.958 -07 000000627 INF: Image SNR check: start
17-03-17 21:33:51.958 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:51.968 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:51.968 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:51.968 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=58.24]
17-03-17 21:33:51.968 -07 000000627 INF: Autofocus start
17-03-17 21:33:51.968 -07 000000627 INF: MeasureProfile start
17-03-17 21:33:51.978 -07 000000627 INF: MeasureProfile done
17-03-17 21:33:51.978 -07 000000627 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:33:51.988 -07 000000627 INF: Autofocus finished
17-03-17 21:33:52.168 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:52.168 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:33:52.168 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140431136014847. ----------
17-03-17 21:33:52.168 -07 000000610 INF: Cycle	52	Tile	1	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:52.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29171, sync = True, waitForSettling = True)
17-03-17 21:33:52.178 -07 000000610 INF: Z Motor: Moving to -0.133536 mm, started at -0.140431 mm, distance = 6.89 um
17-03-17 21:33:52.178 -07 000000610 INF: FPGA: Xmit ZDACW 29171\n [Z Motor]
17-03-17 21:33:52.178 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:33:52.188 -07 000000610 INF: FPGA: 'ZDACW 29171' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:52.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:52.188 -07 000000431 INF: FPGA: Recv ZDACR 29171
17-03-17 21:33:52.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:52.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.348 -07 000000576 INF: FPGA: Recv ZSGSRD 30076
17-03-17 21:33:52.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:52.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.358 -07 000000475 INF: FPGA: Recv ZSGSRD 30072
17-03-17 21:33:52.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.368 -07 000000458 INF: FPGA: Recv ZSGSRD 30078
17-03-17 21:33:52.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.378 -07 000000627 INF: FPGA: Recv ZSGSRD 30072
17-03-17 21:33:52.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30077
17-03-17 21:33:52.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.398 -07 000000459 INF: FPGA: Recv ZSGSRD 30079
17-03-17 21:33:52.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.408 -07 000000424 INF: FPGA: Recv ZSGSRD 30074
17-03-17 21:33:52.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.418 -07 000000458 INF: FPGA: Recv ZSGSRD 30075
17-03-17 21:33:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.428 -07 000000547 INF: FPGA: Recv ZSGSRD 30074
17-03-17 21:33:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:52.438 -07 000000480 INF: FPGA: Recv ZSGSRD 30071
17-03-17 21:33:52.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:52.448 -07 000000438 INF: FPGA: Recv ZPIEZORD 25710
17-03-17 21:33:52.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:52.458 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.451 V. Piezo Error = -9.6 V.
17-03-17 21:33:52.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30075 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30074 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30071 (-132.7 uncal um), Max = 30079 (-132.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:33:52.458 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30075, posNoise = 4, negNoise = 4
17-03-17 21:33:52.458 -07 000000610 INF: Z Motor: After move to -0.133536, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:52.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:33:52.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:52.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:52.458 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:52.458 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:52.458 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:52.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:52.458 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:52.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:52.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:52.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:52.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:33:52.458 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:33:52.468 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:52.468 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:52.468 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:33:52.468 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:33:52.478 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:33:52.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:52.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:33:52.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:52.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:33:52.488 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 21:33:52.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29347 150\n [Camera]
17-03-17 21:33:52.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:53.128 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:53.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:53.128 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:53.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:53.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:53.138 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:53.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:33:53.138 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:53.138 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:53.138 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:33:53.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29347 819
17-03-17 21:33:53.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:53.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:33:53.518 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:33:53.518 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:53.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:33:53.518 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:33:53.518 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:53.518 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:33:53.518 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:33:53.528 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:33:53.528 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:33:53.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:33:53.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:33:53.678 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:53.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:33:53.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:33:53.688 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:53.808 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:53.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:33:53.808 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:53.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:33:53.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:33:53.868 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:53.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29347 150' command took 2 ms to send, 1369 ms to get response, and 1377 ms overall
17-03-17 21:33:53.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:33:53.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133531532174596. ------
17-03-17 21:33:53.878 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:53.878 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13998 mm
17-03-17 21:33:53.878 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:53.878 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:33:53.878 -07 000000547 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 21:33:53.878 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30578, sync = True, waitForSettling = False)
17-03-17 21:33:53.878 -07 000000626 INF: Z Motor: Moving to -0.139977 mm, started at -0.133532 mm, distance = -6.45 um
17-03-17 21:33:53.878 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:53.888 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:33:53.888 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:53.888 -07 000000476 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:33:53.898 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:33:53.898 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:53.898 -07 000000547 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:53.898 -07 000000547 INF: Y Motor: Moving 1330 steps2
17-03-17 21:33:53.898 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:53.908 -07 000000626 INF: FPGA: Xmit ZDACW 30578\n [Z Motor]
17-03-17 21:33:53.908 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:33:53.918 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:53.918 -07 000000626 INF: FPGA: 'ZDACW 30578' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:33:53.928 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:53.928 -07 000000012 INF: FPGA: Recv ZDACR 30578
17-03-17 21:33:53.938 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:33:53.938 -07 000000626 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:33:54.098 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:54.098 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 21:33:54.198 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:33:54.198 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:33:54.198 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:54.198 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:33:54.198 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:33:54.198 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:54.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:54.198 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:54.198 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 21:33:54.208 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 21:33:54.288 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:33:54.288 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:33:54.318 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:54.328 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:33:54.328 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:33:54.328 -07 000000547 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:54.328 -07 000000547 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:33:54.328 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 21:33:54.718 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.974486,
17-03-17 21:33:55.278 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:55.278 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:33:55.288 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:55.288 -07 000000547 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:55.308 -07 000000547 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:55.308 -07 000000547 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:55.308 -07 000000547 INF: Y Motor: Moved to 60.7329 after 1426 ms (table move)
17-03-17 21:33:55.308 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139977 mm (DAC = 30578)
17-03-17 21:33:55.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.318 -07 000000569 INF: FPGA: Recv ZSGSRD 31089
17-03-17 21:33:55.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:33:55.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.318 -07 000000576 INF: FPGA: Recv ZSGSRD 31084
17-03-17 21:33:55.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:55.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.328 -07 000000512 INF: FPGA: Recv ZSGSRD 31076
17-03-17 21:33:55.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.338 -07 000000012 INF: FPGA: Recv ZSGSRD 31076
17-03-17 21:33:55.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.348 -07 000000480 INF: FPGA: Recv ZSGSRD 31085
17-03-17 21:33:55.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.358 -07 000000458 INF: FPGA: Recv ZSGSRD 31085
17-03-17 21:33:55.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.368 -07 000000475 INF: FPGA: Recv ZSGSRD 31085
17-03-17 21:33:55.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.378 -07 000000547 INF: FPGA: Recv ZSGSRD 31073
17-03-17 21:33:55.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.388 -07 000000626 INF: FPGA: Recv ZSGSRD 31086
17-03-17 21:33:55.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:55.398 -07 000000415 INF: FPGA: Recv ZSGSRD 31078
17-03-17 21:33:55.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.408 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:55.408 -07 000000458 INF: FPGA: Recv ZPIEZORD 27072
17-03-17 21:33:55.418 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:55.418 -07 000000382 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.666 V. Piezo Error = -8.8 V.
17-03-17 21:33:55.418 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31082 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31084 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31073 (-139.1 uncal um), Max = 31089 (-139.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:33:55.418 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31082, posNoise = 7, negNoise = 9
17-03-17 21:33:55.418 -07 000000382 INF: Z Motor: After move to -0.139977, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:55.418 -07 000000382 INF: Z Motor: Settle wait time = 1429 ms, measure time = 102 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:33:55.418 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:55.468 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:33:55.468 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:55.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:55.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:55.468 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:55.468 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:55.468 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:55.468 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:55.468 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:55.468 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:55.478 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:55.478 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:55.488 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:33:55.488 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:33:55.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:55.538 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:33:55.738 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:33:55.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:33:55.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:55.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:33:55.768 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:55.768 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:55.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:33:55.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:33:55.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:55.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:55.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:33:55.878 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:55.878 -07 000000476 INF: Autofocus start
17-03-17 21:33:55.878 -07 000000476 INF: MeasureProfile start
17-03-17 21:33:55.878 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:55.888 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:55.888 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:55.888 -07 000000476 INF: MeasureProfile done
17-03-17 21:33:55.888 -07 000000476 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:33:55.888 -07 000000476 INF: Autofocus finished
17-03-17 21:33:56.088 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:33:56.088 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:33:56.088 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140000713801349. ----------
17-03-17 21:33:56.088 -07 000000610 INF: Cycle	52	Tile	2	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:33:56.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29119, sync = True, waitForSettling = True)
17-03-17 21:33:56.098 -07 000000610 INF: Z Motor: Moving to -0.133298 mm, started at -0.140001 mm, distance = 6.70 um
17-03-17 21:33:56.098 -07 000000610 INF: FPGA: Xmit ZDACW 29119\n [Z Motor]
17-03-17 21:33:56.098 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:33:56.108 -07 000000610 INF: FPGA: 'ZDACW 29119' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:33:56.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:56.108 -07 000000475 INF: FPGA: Recv ZDACR 29119
17-03-17 21:33:56.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:33:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.268 -07 000000626 INF: FPGA: Recv ZSGSRD 30037
17-03-17 21:33:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:56.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.278 -07 000000382 INF: FPGA: Recv ZSGSRD 30044
17-03-17 21:33:56.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.288 -07 000000480 INF: FPGA: Recv ZSGSRD 30042
17-03-17 21:33:56.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.298 -07 000000429 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:33:56.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.308 -07 000000438 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:33:56.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.318 -07 000000012 INF: FPGA: Recv ZSGSRD 30038
17-03-17 21:33:56.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.328 -07 000000476 INF: FPGA: Recv ZSGSRD 30040
17-03-17 21:33:56.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.338 -07 000000547 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:33:56.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30040
17-03-17 21:33:56.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:56.358 -07 000000431 INF: FPGA: Recv ZSGSRD 30043
17-03-17 21:33:56.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:56.368 -07 000000438 INF: FPGA: Recv ZPIEZORD 25726
17-03-17 21:33:56.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:56.378 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.5 V.
17-03-17 21:33:56.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30040 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30037 (-132.5 uncal um), Max = 30044 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:33:56.378 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30040, posNoise = 4, negNoise = 3
17-03-17 21:33:56.378 -07 000000610 INF: Z Motor: After move to -0.133298, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:56.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:33:56.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:56.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:56.378 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:56.378 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:56.378 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:33:56.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:33:56.378 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:33:56.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:56.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:33:56.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:33:56.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:56.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:33:56.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:33:56.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:33:56.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:33:56.388 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:33:56.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:33:56.398 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:33:56.398 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:33:56.398 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:33:56.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29295 150\n [Camera]
17-03-17 21:33:56.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:33:56.888 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:33:56.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:33:57.038 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:33:57.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:33:57.038 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:57.038 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:33:57.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:33:57.038 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:57.038 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:57.038 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:33:57.038 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:57.038 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:33:57.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29295 819
17-03-17 21:33:57.378 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:33:57.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:33:57.438 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:33:57.438 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:57.448 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:33:57.448 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:33:57.448 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:57.448 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:57.448 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:33:57.448 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:57.458 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:33:57.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1179
17-03-17 21:33:57.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1179
17-03-17 21:33:57.588 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:33:57.598 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:33:57.598 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:33:57.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1179
17-03-17 21:33:57.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1179
17-03-17 21:33:57.598 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:33:57.598 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:33:57.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:33:57.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:33:57.778 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:33:57.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29295 150' command took 2 ms to send, 1367 ms to get response, and 1377 ms overall
17-03-17 21:33:57.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:33:57.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133306684749634. ------
17-03-17 21:33:57.788 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:57.788 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13976 mm
17-03-17 21:33:57.788 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:33:57.788 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:33:57.788 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:57.788 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30530, sync = True, waitForSettling = False)
17-03-17 21:33:57.788 -07 000000459 INF: Z Motor: Moving to -0.139757 mm, started at -0.133307 mm, distance = -6.45 um
17-03-17 21:33:57.788 -07 000000476 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:33:57.798 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:33:57.798 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:57.798 -07 000000501 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:33:57.808 -07 000000459 INF: FPGA: Xmit ZDACW 30530\n [Z Motor]
17-03-17 21:33:57.808 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:57.808 -07 000000476 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:57.808 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:33:57.808 -07 000000476 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:33:57.808 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:33:57.818 -07 000000459 INF: FPGA: 'ZDACW 30530' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:33:57.818 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:33:57.828 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:33:57.838 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:33:57.838 -07 000000415 INF: FPGA: Recv ZDACR 30530
17-03-17 21:33:57.848 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:33:57.848 -07 000000459 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:33:57.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:33:57.978 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:33:57.978 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:57.988 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:57.988 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:33:57.988 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:33:57.988 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:57.988 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:33:57.988 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:33:57.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:33:58.018 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:33:58.018 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:33:58.198 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:33:58.198 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 394 ms overall
17-03-17 21:33:58.238 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:58.248 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:33:58.248 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:33:58.248 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:58.248 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:33:58.248 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-17 21:33:59.198 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:33:59.198 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:33:59.208 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:59.208 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:33:59.228 -07 000000476 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:33:59.228 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:33:59.228 -07 000000476 INF: Y Motor: Moved to 61.5640 after 1436 ms (table move)
17-03-17 21:33:59.228 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139757 mm (DAC = 30530)
17-03-17 21:33:59.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.238 -07 000000569 INF: FPGA: Recv ZSGSRD 31049
17-03-17 21:33:59.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:33:59.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.238 -07 000000627 INF: FPGA: Recv ZSGSRD 31039
17-03-17 21:33:59.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:33:59.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.248 -07 000000512 INF: FPGA: Recv ZSGSRD 31049
17-03-17 21:33:59.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.258 -07 000000576 INF: FPGA: Recv ZSGSRD 31047
17-03-17 21:33:59.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.268 -07 000000476 INF: FPGA: Recv ZSGSRD 31040
17-03-17 21:33:59.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.278 -07 000000424 INF: FPGA: Recv ZSGSRD 31044
17-03-17 21:33:59.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.288 -07 000000429 INF: FPGA: Recv ZSGSRD 31047
17-03-17 21:33:59.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.298 -07 000000512 INF: FPGA: Recv ZSGSRD 31041
17-03-17 21:33:59.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.308 -07 000000576 INF: FPGA: Recv ZSGSRD 31051
17-03-17 21:33:59.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:33:59.318 -07 000000547 INF: FPGA: Recv ZSGSRD 31049
17-03-17 21:33:59.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:33:59.328 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:33:59.328 -07 000000382 INF: FPGA: Recv ZPIEZORD 27061
17-03-17 21:33:59.338 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:33:59.338 -07 000000431 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -8.8 V.
17-03-17 21:33:59.338 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31046 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31047 (-139.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31039 (-138.9 uncal um), Max = 31051 (-139.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:33:59.338 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31046, posNoise = 5, negNoise = 7
17-03-17 21:33:59.338 -07 000000431 INF: Z Motor: After move to -0.139757, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:33:59.338 -07 000000431 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:33:59.338 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:33:59.388 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:33:59.388 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:33:59.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:33:59.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:33:59.388 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:33:59.388 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:33:59.388 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:33:59.388 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:33:59.388 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:33:59.388 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:33:59.398 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:33:59.398 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:33:59.408 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:33:59.408 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:33:59.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:33:59.458 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:33:59.648 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:33:59.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:33:59.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:33:59.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199916248, 0x0, 559484976) start.
17-03-17 21:33:59.688 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:33:59.688 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:33:59.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:33:59.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199916248, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:33:59.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:33:59.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:33:59.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:33:59.798 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:33:59.798 -07 000000626 INF: Autofocus start
17-03-17 21:33:59.798 -07 000000626 INF: MeasureProfile start
17-03-17 21:33:59.798 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:33:59.808 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:33:59.808 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:33:59.818 -07 000000626 INF: MeasureProfile done
17-03-17 21:33:59.818 -07 000000626 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:33:59.818 -07 000000626 INF: Autofocus finished
17-03-17 21:34:00.008 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:00.008 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:00.008 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139769442164246. ----------
17-03-17 21:34:00.008 -07 000000610 INF: Cycle	52	Tile	3	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:00.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29008, sync = True, waitForSettling = True)
17-03-17 21:34:00.018 -07 000000610 INF: Z Motor: Moving to -0.132790 mm, started at -0.139769 mm, distance = 6.98 um
17-03-17 21:34:00.018 -07 000000610 INF: FPGA: Xmit ZDACW 29008\n [Z Motor]
17-03-17 21:34:00.018 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:34:00.028 -07 000000610 INF: FPGA: 'ZDACW 29008' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:00.028 -07 000000415 INF: FPGA: Recv ZDACR 29008
17-03-17 21:34:00.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:00.088 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.985358,
17-03-17 21:34:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.188 -07 000000547 INF: FPGA: Recv ZSGSRD 29956
17-03-17 21:34:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29960
17-03-17 21:34:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.208 -07 000000501 INF: FPGA: Recv ZSGSRD 29961
17-03-17 21:34:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.218 -07 000000431 INF: FPGA: Recv ZSGSRD 29955
17-03-17 21:34:00.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29963
17-03-17 21:34:00.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.238 -07 000000547 INF: FPGA: Recv ZSGSRD 29964
17-03-17 21:34:00.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.248 -07 000000459 INF: FPGA: Recv ZSGSRD 29957
17-03-17 21:34:00.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.258 -07 000000608 INF: FPGA: Recv ZSGSRD 29961
17-03-17 21:34:00.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.268 -07 000000431 INF: FPGA: Recv ZSGSRD 29958
17-03-17 21:34:00.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:00.278 -07 000000627 INF: FPGA: Recv ZSGSRD 29958
17-03-17 21:34:00.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:00.288 -07 000000626 INF: FPGA: Recv ZPIEZORD 25642
17-03-17 21:34:00.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:00.298 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.5 V.
17-03-17 21:34:00.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29959 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29959 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29955 (-132.0 uncal um), Max = 29964 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:34:00.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29959, posNoise = 5, negNoise = 4
17-03-17 21:34:00.298 -07 000000610 INF: Z Motor: After move to -0.132790, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:00.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:34:00.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:00.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:00.298 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:00.298 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:00.298 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:00.298 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:00.298 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:00.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:00.298 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:34:00.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:00.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:00.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:00.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:00.298 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:00.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:00.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:00.308 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:34:00.308 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:34:00.318 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:34:00.318 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:34:00.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29184 150\n [Camera]
17-03-17 21:34:00.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:00.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:00.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:00.948 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:00.948 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:00.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:34:00.958 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:00.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:00.958 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:00.958 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:00.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:34:01.148 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29184 819
17-03-17 21:34:01.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:01.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:34:01.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:34:01.328 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:34:01.328 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:01.328 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:34:01.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:01.338 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:01.338 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:34:01.338 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:34:01.348 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:34:01.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:01.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:01.508 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:01.508 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:01.508 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:34:01.508 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:01.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:01.508 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:01.508 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:01.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:34:01.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:34:01.698 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:01.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29184 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-17 21:34:01.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:01.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132786323566152. ------
17-03-17 21:34:01.698 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:01.698 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13918 mm
17-03-17 21:34:01.698 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:01.698 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:34:01.698 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:34:01.698 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30405, sync = True, waitForSettling = False)
17-03-17 21:34:01.698 -07 000000424 INF: Z Motor: Moving to -0.139185 mm, started at -0.132786 mm, distance = -6.40 um
17-03-17 21:34:01.698 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:01.708 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:01.708 -07 000000424 INF: FPGA: Xmit ZDACW 30405\n [Z Motor]
17-03-17 21:34:01.708 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:34:01.718 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:01.718 -07 000000424 INF: FPGA: 'ZDACW 30405' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:01.718 -07 000000429 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:34:01.728 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:34:01.728 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:01.728 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:01.728 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:01.728 -07 000000480 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:34:01.738 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:01.738 -07 000000415 INF: FPGA: Recv ZDACR 30405
17-03-17 21:34:01.748 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:01.748 -07 000000424 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:01.748 -07 000000424 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:34:01.888 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:01.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:01.908 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:34:01.908 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:34:01.908 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:01.908 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:34:01.908 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:34:01.908 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:01.908 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:01.908 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:34:01.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:01.918 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:34:01.928 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:01.928 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:34:02.118 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:34:02.118 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 21:34:02.158 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:02.168 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:34:02.168 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:34:02.168 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:02.168 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:34:02.168 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 21:34:03.118 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:03.118 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:34:03.128 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:03.128 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:03.148 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:03.148 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:03.148 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1446 ms (table move)
17-03-17 21:34:03.148 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139185 mm (DAC = 30405)
17-03-17 21:34:03.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.158 -07 000000012 INF: FPGA: Recv ZSGSRD 30963
17-03-17 21:34:03.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:34:03.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30953
17-03-17 21:34:03.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:03.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:34:03.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.178 -07 000000569 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:34:03.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.188 -07 000000547 INF: FPGA: Recv ZSGSRD 30952
17-03-17 21:34:03.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30953
17-03-17 21:34:03.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.208 -07 000000576 INF: FPGA: Recv ZSGSRD 30949
17-03-17 21:34:03.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.218 -07 000000438 INF: FPGA: Recv ZSGSRD 30952
17-03-17 21:34:03.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.228 -07 000000501 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:34:03.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:03.238 -07 000000547 INF: FPGA: Recv ZSGSRD 30963
17-03-17 21:34:03.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.248 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:03.248 -07 000000012 INF: FPGA: Recv ZPIEZORD 26961
17-03-17 21:34:03.258 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.258 -07 000000431 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 21:34:03.258 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30956 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30955 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30949 (-138.3 uncal um), Max = 30963 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:34:03.258 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30956, posNoise = 7, negNoise = 7
17-03-17 21:34:03.258 -07 000000431 INF: Z Motor: After move to -0.139185, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:03.258 -07 000000431 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:34:03.258 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:03.308 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:34:03.308 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:03.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:03.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:03.308 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:03.308 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:03.308 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:03.318 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:03.318 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:03.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:03.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:03.318 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:03.318 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:34:03.318 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:34:03.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:03.368 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:03.568 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:03.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:03.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:03.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 21:34:03.608 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:03.608 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:03.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:34:03.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:34:03.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:03.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:03.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:34:03.708 -07 000000475 INF: Autofocus start
17-03-17 21:34:03.708 -07 000000475 INF: MeasureProfile start
17-03-17 21:34:03.708 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:03.708 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:03.718 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:03.718 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:03.718 -07 000000475 INF: MeasureProfile done
17-03-17 21:34:03.718 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:34:03.718 -07 000000475 INF: Autofocus finished
17-03-17 21:34:03.918 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:03.918 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:03.918 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139191263071487. ----------
17-03-17 21:34:03.918 -07 000000610 INF: Cycle	52	Tile	4	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:03.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28929, sync = True, waitForSettling = True)
17-03-17 21:34:03.928 -07 000000610 INF: Z Motor: Moving to -0.132428 mm, started at -0.139191 mm, distance = 6.76 um
17-03-17 21:34:03.928 -07 000000610 INF: FPGA: Xmit ZDACW 28929\n [Z Motor]
17-03-17 21:34:03.928 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:34:03.938 -07 000000610 INF: FPGA: 'ZDACW 28929' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:03.938 -07 000000012 INF: FPGA: Recv ZDACR 28929
17-03-17 21:34:03.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:03.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29907
17-03-17 21:34:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.108 -07 000000480 INF: FPGA: Recv ZSGSRD 29895
17-03-17 21:34:04.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:34:04.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.128 -07 000000438 INF: FPGA: Recv ZSGSRD 29905
17-03-17 21:34:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.138 -07 000000501 INF: FPGA: Recv ZSGSRD 29905
17-03-17 21:34:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29901
17-03-17 21:34:04.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29903
17-03-17 21:34:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:34:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29901
17-03-17 21:34:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:04.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29900
17-03-17 21:34:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:04.198 -07 000000608 INF: FPGA: Recv ZPIEZORD 25603
17-03-17 21:34:04.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:04.208 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.4 V.
17-03-17 21:34:04.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29904 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29904 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29895 (-131.6 uncal um), Max = 29912 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:34:04.208 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29904, posNoise = 8, negNoise = 9
17-03-17 21:34:04.208 -07 000000610 INF: Z Motor: After move to -0.132428, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:04.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:34:04.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:04.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:04.208 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:04.208 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:04.208 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:04.208 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:04.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:04.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:04.208 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:04.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:04.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:04.218 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:04.218 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:04.218 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:04.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:04.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:04.228 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:34:04.228 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:34:04.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:34:04.228 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:34:04.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29106 150\n [Camera]
17-03-17 21:34:04.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:34:04.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:04.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:04.868 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:04.868 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:04.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:34:04.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:04.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:04.878 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:04.878 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:04.878 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:34:05.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29106 819
17-03-17 21:34:05.208 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:05.248 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:34:05.248 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:34:05.248 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:05.258 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:05.258 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:34:05.258 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:34:05.258 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:05.258 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:34:05.268 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:05.268 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:34:05.418 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:05.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:05.418 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:05.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:05.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:34:05.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:05.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:05.428 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:05.428 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:05.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 21:34:05.458 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.001704,
17-03-17 21:34:05.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:05.618 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:05.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29106 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-17 21:34:05.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:05.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132432991898355. ------
17-03-17 21:34:05.618 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:05.618 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13919 mm
17-03-17 21:34:05.618 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:05.618 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:34:05.618 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:34:05.618 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30405, sync = True, waitForSettling = False)
17-03-17 21:34:05.618 -07 000000415 INF: Z Motor: Moving to -0.139185 mm, started at -0.132433 mm, distance = -6.75 um
17-03-17 21:34:05.618 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:05.628 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:05.628 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:05.628 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:34:05.638 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:34:05.638 -07 000000608 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:05.638 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:05.638 -07 000000608 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:34:05.638 -07 000000415 INF: FPGA: Xmit ZDACW 30405\n [Z Motor]
17-03-17 21:34:05.638 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:34:05.648 -07 000000415 INF: FPGA: 'ZDACW 30405' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:34:05.648 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:05.658 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:05.668 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:05.668 -07 000000475 INF: FPGA: Recv ZDACR 30405
17-03-17 21:34:05.678 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:05.678 -07 000000415 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:34:05.818 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:34:05.818 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:34:05.818 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:05.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:34:05.828 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:34:05.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:05.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:05.828 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:34:05.828 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:34:05.838 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:34:05.848 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:05.848 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:34:06.028 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:34:06.028 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:34:06.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:06.068 -07 000000431 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:34:06.078 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:06.078 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:06.078 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:34:06.078 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 21:34:06.888 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:06.898 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:07.028 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:07.028 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:34:07.038 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:07.038 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:07.058 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:07.058 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:07.058 -07 000000608 INF: Y Motor: Moved to 63.2241 after 1437 ms (table move)
17-03-17 21:34:07.058 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139185 mm (DAC = 30405)
17-03-17 21:34:07.058 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.068 -07 000000438 INF: FPGA: Recv ZSGSRD 30965
17-03-17 21:34:07.068 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:34:07.068 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.068 -07 000000382 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:34:07.078 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:07.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.078 -07 000000627 INF: FPGA: Recv ZSGSRD 30954
17-03-17 21:34:07.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.088 -07 000000458 INF: FPGA: Recv ZSGSRD 30956
17-03-17 21:34:07.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30960
17-03-17 21:34:07.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.108 -07 000000431 INF: FPGA: Recv ZSGSRD 30961
17-03-17 21:34:07.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.118 -07 000000458 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:34:07.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.128 -07 000000382 INF: FPGA: Recv ZSGSRD 30949
17-03-17 21:34:07.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.138 -07 000000501 INF: FPGA: Recv ZSGSRD 30956
17-03-17 21:34:07.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:07.148 -07 000000569 INF: FPGA: Recv ZSGSRD 30956
17-03-17 21:34:07.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.158 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:07.158 -07 000000459 INF: FPGA: Recv ZPIEZORD 26959
17-03-17 21:34:07.168 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.168 -07 000000480 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 21:34:07.168 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30957 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30957 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30949 (-138.3 uncal um), Max = 30965 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:34:07.168 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30957, posNoise = 8, negNoise = 8
17-03-17 21:34:07.168 -07 000000480 INF: Z Motor: After move to -0.139185, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:07.168 -07 000000480 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:34:07.168 -07 000000480 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:07.218 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:34:07.218 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:07.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:07.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:07.218 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:07.218 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:07.218 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:07.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:07.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:07.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:07.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:07.218 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:07.238 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:34:07.238 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:34:07.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:07.288 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:07.488 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:07.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:07.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:07.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:34:07.518 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:07.528 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:07.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:34:07.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 21:34:07.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:07.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:34:07.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:34:07.628 -07 000000415 INF: Autofocus start
17-03-17 21:34:07.628 -07 000000415 INF: MeasureProfile start
17-03-17 21:34:07.628 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:07.628 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:07.638 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:07.638 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:07.638 -07 000000415 INF: MeasureProfile done
17-03-17 21:34:07.638 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:34:07.638 -07 000000415 INF: Autofocus finished
17-03-17 21:34:07.838 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:07.838 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:34:07.838 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139197687283629. ----------
17-03-17 21:34:07.838 -07 000000610 INF: Cycle	52	Tile	5	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:07.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28900, sync = True, waitForSettling = True)
17-03-17 21:34:07.848 -07 000000610 INF: Z Motor: Moving to -0.132296 mm, started at -0.139198 mm, distance = 6.90 um
17-03-17 21:34:07.848 -07 000000610 INF: FPGA: Xmit ZDACW 28900\n [Z Motor]
17-03-17 21:34:07.848 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:34:07.858 -07 000000610 INF: FPGA: 'ZDACW 28900' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:07.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:07.858 -07 000000569 INF: FPGA: Recv ZDACR 28900
17-03-17 21:34:07.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:07.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:08.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29880
17-03-17 21:34:08.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:08.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.028 -07 000000480 INF: FPGA: Recv ZSGSRD 29883
17-03-17 21:34:08.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.038 -07 000000627 INF: FPGA: Recv ZSGSRD 29888
17-03-17 21:34:08.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.048 -07 000000459 INF: FPGA: Recv ZSGSRD 29884
17-03-17 21:34:08.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.058 -07 000000424 INF: FPGA: Recv ZSGSRD 29886
17-03-17 21:34:08.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:08.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.068 -07 000000626 INF: FPGA: Recv ZSGSRD 29886
17-03-17 21:34:08.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.078 -07 000000547 INF: FPGA: Recv ZSGSRD 29886
17-03-17 21:34:08.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.088 -07 000000569 INF: FPGA: Recv ZSGSRD 29883
17-03-17 21:34:08.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.098 -07 000000501 INF: FPGA: Recv ZSGSRD 29879
17-03-17 21:34:08.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:08.108 -07 000000608 INF: FPGA: Recv ZSGSRD 29880
17-03-17 21:34:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:08.118 -07 000000438 INF: FPGA: Recv ZPIEZORD 25573
17-03-17 21:34:08.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:08.128 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.5 V.
17-03-17 21:34:08.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29884 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29888 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:08.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29884, posNoise = 4, negNoise = 5
17-03-17 21:34:08.128 -07 000000610 INF: Z Motor: After move to -0.132296, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:08.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:34:08.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:08.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:08.128 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:08.128 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:08.128 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:08.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:08.128 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:08.128 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:08.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:08.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:08.128 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:08.128 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:08.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:08.128 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:08.138 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:08.138 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:08.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:34:08.138 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:34:08.138 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:34:08.138 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:08.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29077 150\n [Camera]
17-03-17 21:34:08.348 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:08.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:08.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:08.778 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:08.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:08.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 21:34:08.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:08.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:08.788 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:08.788 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:08.788 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 21:34:08.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29077 819
17-03-17 21:34:09.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:09.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:34:09.158 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:34:09.158 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:09.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:34:09.158 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:34:09.158 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:09.168 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:34:09.168 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:34:09.168 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:34:09.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:34:09.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:09.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:09.338 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:09.338 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:09.338 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 21:34:09.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:09.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:09.338 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:09.338 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:09.338 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 21:34:09.528 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:09.528 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:09.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29077 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:34:09.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:09.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132304507655519. ------
17-03-17 21:34:09.528 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:09.528 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13870 mm
17-03-17 21:34:09.528 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:09.538 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30300, sync = True, waitForSettling = False)
17-03-17 21:34:09.538 -07 000000608 INF: Z Motor: Moving to -0.138705 mm, started at -0.132305 mm, distance = -6.40 um
17-03-17 21:34:09.538 -07 000000608 INF: FPGA: Xmit ZDACW 30300\n [Z Motor]
17-03-17 21:34:09.538 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:34:09.538 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 21:34:09.538 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:09.538 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 21:34:09.538 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:34:09.548 -07 000000608 INF: FPGA: 'ZDACW 30300' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:09.548 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:09.548 -07 000000512 INF: FPGA: Recv ZDACR 30300
17-03-17 21:34:09.558 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:09.558 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:09.558 -07 000000608 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 21:34:09.558 -07 000000480 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:34:09.568 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:09.568 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:34:09.568 -07 000000424 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:09.568 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:09.568 -07 000000424 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:34:09.578 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:09.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:34:09.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:34:09.738 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:09.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:34:09.738 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:34:09.738 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:09.738 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:09.738 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:34:09.738 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:34:09.748 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:34:09.768 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:09.768 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 227 ms overall
17-03-17 21:34:09.948 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:34:09.948 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 21:34:09.988 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:09.988 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:34:09.998 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:09.998 -07 000000424 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:09.998 -07 000000424 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 21:34:09.998 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.189 mm/sec
17-03-17 21:34:10.828 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.019446,
17-03-17 21:34:10.948 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:10.948 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:34:10.958 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:10.958 -07 000000424 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:10.978 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:10.978 -07 000000424 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:10.978 -07 000000424 INF: Y Motor: Moved to 64.0571 after 1439 ms (table move)
17-03-17 21:34:10.978 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138705 mm (DAC = 30300)
17-03-17 21:34:10.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:10.978 -07 000000459 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:34:10.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:10.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:10.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:34:10.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:10.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:10.998 -07 000000547 INF: FPGA: Recv ZSGSRD 30881
17-03-17 21:34:11.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.008 -07 000000512 INF: FPGA: Recv ZSGSRD 30880
17-03-17 21:34:11.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.018 -07 000000475 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:34:11.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.028 -07 000000569 INF: FPGA: Recv ZSGSRD 30883
17-03-17 21:34:11.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.038 -07 000000382 INF: FPGA: Recv ZSGSRD 30884
17-03-17 21:34:11.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.048 -07 000000608 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:34:11.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.058 -07 000000501 INF: FPGA: Recv ZSGSRD 30880
17-03-17 21:34:11.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30886
17-03-17 21:34:11.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.078 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:11.078 -07 000000576 INF: FPGA: Recv ZPIEZORD 26870
17-03-17 21:34:11.088 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.088 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -8.8 V.
17-03-17 21:34:11.088 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30882 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30882 (-137.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30879 (-137.9 uncal um), Max = 30886 (-137.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:34:11.088 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30882, posNoise = 4, negNoise = 3
17-03-17 21:34:11.088 -07 000000626 INF: Z Motor: After move to -0.138705, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:11.088 -07 000000626 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:34:11.088 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:11.138 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:34:11.138 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:11.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:11.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:11.138 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:11.138 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:11.148 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:11.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:11.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:11.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:11.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:11.148 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:11.158 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:34:11.158 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:34:11.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:11.218 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:11.418 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:11.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:11.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:11.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-17 21:34:11.458 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:11.458 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:11.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 299 ms overall
17-03-17 21:34:11.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:34:11.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:11.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:34:11.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:34:11.558 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:11.558 -07 000000608 INF: Autofocus start
17-03-17 21:34:11.558 -07 000000608 INF: MeasureProfile start
17-03-17 21:34:11.558 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:11.568 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:11.568 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:11.568 -07 000000608 INF: MeasureProfile done
17-03-17 21:34:11.568 -07 000000608 INF: X=25  Z correction [um]=0.0963114
17-03-17 21:34:11.568 -07 000000608 INF: Autofocus finished
17-03-17 21:34:11.768 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:11.768 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:11.768 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138715871372997. ----------
17-03-17 21:34:11.778 -07 000000610 INF: Cycle	52	Tile	6	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:11.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28833, sync = True, waitForSettling = True)
17-03-17 21:34:11.778 -07 000000610 INF: Z Motor: Moving to -0.131989 mm, started at -0.138716 mm, distance = 6.73 um
17-03-17 21:34:11.778 -07 000000610 INF: FPGA: Xmit ZDACW 28833\n [Z Motor]
17-03-17 21:34:11.778 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:34:11.788 -07 000000610 INF: FPGA: 'ZDACW 28833' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:11.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:11.788 -07 000000424 INF: FPGA: Recv ZDACR 28833
17-03-17 21:34:11.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:11.888 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:11.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:11.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.948 -07 000000459 INF: FPGA: Recv ZSGSRD 29834
17-03-17 21:34:11.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:11.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.958 -07 000000431 INF: FPGA: Recv ZSGSRD 29839
17-03-17 21:34:11.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.968 -07 000000458 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:34:11.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.978 -07 000000608 INF: FPGA: Recv ZSGSRD 29827
17-03-17 21:34:11.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.988 -07 000000429 INF: FPGA: Recv ZSGSRD 29831
17-03-17 21:34:11.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:11.998 -07 000000459 INF: FPGA: Recv ZSGSRD 29840
17-03-17 21:34:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:12.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:34:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:12.018 -07 000000547 INF: FPGA: Recv ZSGSRD 29833
17-03-17 21:34:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:12.028 -07 000000480 INF: FPGA: Recv ZSGSRD 29835
17-03-17 21:34:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:12.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:12.038 -07 000000576 INF: FPGA: Recv ZSGSRD 29834
17-03-17 21:34:12.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:12.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:12.048 -07 000000415 INF: FPGA: Recv ZPIEZORD 25529
17-03-17 21:34:12.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:12.058 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.5 V.
17-03-17 21:34:12.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29835 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29827 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:34:12.058 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29835, posNoise = 5, negNoise = 8
17-03-17 21:34:12.058 -07 000000610 INF: Z Motor: After move to -0.131989, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:12.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:34:12.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:12.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:12.058 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:12.058 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:12.058 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:12.058 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:12.058 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:12.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:12.058 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:12.058 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:12.058 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:12.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:12.058 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:34:12.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:12.068 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:12.068 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:12.068 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:34:12.068 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:12.078 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:34:12.078 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:34:12.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 29010 150\n [Camera]
17-03-17 21:34:12.278 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:12.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:12.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:12.708 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:12.708 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:12.708 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 21:34:12.718 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:12.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:12.718 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:12.718 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:12.718 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 21:34:12.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29010 819
17-03-17 21:34:13.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:13.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:34:13.098 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:34:13.098 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:13.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:34:13.098 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:34:13.098 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:13.108 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:13.108 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:13.108 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:34:13.108 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:34:13.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:13.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:13.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:13.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:13.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:13.398 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:13.398 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:13.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 21:34:13.408 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:13.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:34:13.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:34:13.458 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:13.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 29010 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:34:13.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:13.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131989721260573. ------
17-03-17 21:34:13.458 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:13.458 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13852 mm
17-03-17 21:34:13.458 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:13.458 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:34:13.458 -07 000000627 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:34:13.458 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30260, sync = True, waitForSettling = False)
17-03-17 21:34:13.468 -07 000000431 INF: Z Motor: Moving to -0.138521 mm, started at -0.131990 mm, distance = -6.53 um
17-03-17 21:34:13.468 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:13.468 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:13.468 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:13.468 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:34:13.478 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:13.478 -07 000000627 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:13.478 -07 000000627 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:13.478 -07 000000627 INF: Y Motor: Moving 1337 steps-11
17-03-17 21:34:13.478 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:13.488 -07 000000431 INF: FPGA: Xmit ZDACW 30260\n [Z Motor]
17-03-17 21:34:13.488 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:34:13.498 -07 000000431 INF: FPGA: 'ZDACW 30260' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:13.498 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:13.508 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:13.508 -07 000000569 INF: FPGA: Recv ZDACR 30260
17-03-17 21:34:13.518 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:13.518 -07 000000431 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:34:13.678 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:13.678 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:34:13.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:34:13.798 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:34:13.798 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:13.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:34:13.798 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:34:13.798 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:13.808 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:13.808 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:13.808 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 541 ms.
17-03-17 21:34:13.808 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:34:13.868 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:34:13.868 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 21:34:13.908 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:13.908 -07 000000424 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:34:13.918 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:13.918 -07 000000627 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:13.918 -07 000000627 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:34:13.918 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 21:34:14.868 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:14.868 -07 000000012 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:34:14.878 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:14.878 -07 000000627 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:14.898 -07 000000627 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:14.898 -07 000000627 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:34:14.898 -07 000000627 INF: Y Motor: Moved to 64.8794 after 1434 ms (table move)
17-03-17 21:34:14.898 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138521 mm (DAC = 30260)
17-03-17 21:34:14.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.908 -07 000000480 INF: FPGA: Recv ZSGSRD 30865
17-03-17 21:34:14.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:14.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.908 -07 000000012 INF: FPGA: Recv ZSGSRD 30854
17-03-17 21:34:14.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.918 -07 000000415 INF: FPGA: Recv ZSGSRD 30854
17-03-17 21:34:14.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30859
17-03-17 21:34:14.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.938 -07 000000501 INF: FPGA: Recv ZSGSRD 30848
17-03-17 21:34:14.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30858
17-03-17 21:34:14.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30849
17-03-17 21:34:14.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.968 -07 000000415 INF: FPGA: Recv ZSGSRD 30843
17-03-17 21:34:14.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30850
17-03-17 21:34:14.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:14.988 -07 000000626 INF: FPGA: Recv ZSGSRD 30854
17-03-17 21:34:14.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:14.998 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:14.998 -07 000000476 INF: FPGA: Recv ZPIEZORD 26850
17-03-17 21:34:15.008 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.008 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -8.8 V.
17-03-17 21:34:15.008 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30853 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30843 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:34:15.008 -07 000000429 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30853, posNoise = 12, negNoise = 10
17-03-17 21:34:15.008 -07 000000429 INF: Z Motor: After move to -0.138521, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:15.008 -07 000000429 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:34:15.008 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:15.058 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:34:15.058 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:15.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:15.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:15.058 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:15.058 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:15.058 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:15.058 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:15.058 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:15.058 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:15.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:15.068 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:15.078 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:34:15.078 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:34:15.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:15.128 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:15.328 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:15.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:15.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:15.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 21:34:15.368 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:15.368 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:15.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 21:34:15.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:34:15.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:15.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:15.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:34:15.468 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:15.468 -07 000000475 INF: Autofocus start
17-03-17 21:34:15.468 -07 000000475 INF: MeasureProfile start
17-03-17 21:34:15.468 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:15.478 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:15.478 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:15.478 -07 000000475 INF: MeasureProfile done
17-03-17 21:34:15.478 -07 000000475 INF: X=12  Z correction [um]=0.03377635
17-03-17 21:34:15.478 -07 000000475 INF: Autofocus finished
17-03-17 21:34:15.678 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:15.678 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:34:15.678 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138529569220886. ----------
17-03-17 21:34:15.678 -07 000000610 INF: Cycle	52	Tile	7	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:15.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28780, sync = True, waitForSettling = True)
17-03-17 21:34:15.688 -07 000000610 INF: Z Motor: Moving to -0.131746 mm, started at -0.138530 mm, distance = 6.78 um
17-03-17 21:34:15.688 -07 000000610 INF: FPGA: Xmit ZDACW 28780\n [Z Motor]
17-03-17 21:34:15.688 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:34:15.698 -07 000000610 INF: FPGA: 'ZDACW 28780' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:15.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:15.698 -07 000000480 INF: FPGA: Recv ZDACR 28780
17-03-17 21:34:15.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:15.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.858 -07 000000438 INF: FPGA: Recv ZSGSRD 29796
17-03-17 21:34:15.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:15.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.868 -07 000000012 INF: FPGA: Recv ZSGSRD 29800
17-03-17 21:34:15.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29803
17-03-17 21:34:15.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:15.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:34:15.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.908 -07 000000627 INF: FPGA: Recv ZSGSRD 29803
17-03-17 21:34:15.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.918 -07 000000438 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:34:15.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.928 -07 000000576 INF: FPGA: Recv ZSGSRD 29802
17-03-17 21:34:15.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.938 -07 000000569 INF: FPGA: Recv ZSGSRD 29796
17-03-17 21:34:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.948 -07 000000608 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:34:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:15.958 -07 000000547 INF: FPGA: Recv ZSGSRD 29800
17-03-17 21:34:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:15.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:15.968 -07 000000012 INF: FPGA: Recv ZPIEZORD 25499
17-03-17 21:34:15.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:15.978 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.4 V.
17-03-17 21:34:15.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29795 (-130.9 uncal um), Max = 29803 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:34:15.978 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 5, negNoise = 3
17-03-17 21:34:15.978 -07 000000610 INF: Z Motor: After move to -0.131746, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:15.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:34:15.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:15.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:15.978 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:15.978 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:15.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:15.978 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:15.978 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:15.978 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:15.978 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:15.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:15.978 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:15.978 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:15.988 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:15.988 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:15.988 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:15.988 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:15.998 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:34:15.998 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:34:15.998 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:34:15.998 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:15.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28957 150\n [Camera]
17-03-17 21:34:16.198 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.014009,
17-03-17 21:34:16.198 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:16.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:16.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:16.628 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:16.638 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:16.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:16.638 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:16.638 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:16.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:34:16.648 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:16.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:34:16.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28957 819
17-03-17 21:34:16.888 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:16.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:16.978 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:17.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:34:17.018 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:34:17.018 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:17.018 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:34:17.018 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:34:17.018 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:17.028 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:17.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:34:17.028 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:17.038 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:34:17.188 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:17.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:17.188 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:17.318 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:17.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:17.318 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:17.318 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:17.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:34:17.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:17.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:34:17.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:34:17.378 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:17.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28957 150' command took 2 ms to send, 1372 ms to get response, and 1377 ms overall
17-03-17 21:34:17.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:17.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131752025411328. ------
17-03-17 21:34:17.378 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:17.378 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13844 mm
17-03-17 21:34:17.378 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:17.378 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:34:17.378 -07 000000627 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 21:34:17.378 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30242, sync = True, waitForSettling = False)
17-03-17 21:34:17.388 -07 000000475 INF: Z Motor: Moving to -0.138439 mm, started at -0.131752 mm, distance = -6.69 um
17-03-17 21:34:17.388 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:17.388 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:17.388 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:34:17.388 -07 000000429 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:34:17.398 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:17.398 -07 000000627 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:17.398 -07 000000627 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:17.398 -07 000000627 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:34:17.398 -07 000000475 INF: FPGA: Xmit ZDACW 30242\n [Z Motor]
17-03-17 21:34:17.398 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:34:17.408 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:17.408 -07 000000475 INF: FPGA: 'ZDACW 30242' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:17.418 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:17.428 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:17.428 -07 000000458 INF: FPGA: Recv ZDACR 30242
17-03-17 21:34:17.438 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:34:17.438 -07 000000475 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:34:17.608 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:17.608 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 21:34:17.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:34:17.708 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:34:17.708 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:17.708 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:34:17.708 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:34:17.708 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:17.718 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:34:17.718 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-17 21:34:17.718 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:17.718 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:34:17.798 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:34:17.798 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 21:34:17.828 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:17.838 -07 000000476 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:34:17.838 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:34:17.838 -07 000000627 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:17.838 -07 000000627 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:34:17.838 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.108 mm/sec
17-03-17 21:34:18.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:18.788 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:34:18.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:18.798 -07 000000627 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:18.818 -07 000000627 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:18.818 -07 000000627 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:34:18.818 -07 000000627 INF: Y Motor: Moved to 65.7144 after 1436 ms (table move)
17-03-17 21:34:18.818 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138439 mm (DAC = 30242)
17-03-17 21:34:18.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.828 -07 000000476 INF: FPGA: Recv ZSGSRD 30847
17-03-17 21:34:18.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:34:18.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.828 -07 000000429 INF: FPGA: Recv ZSGSRD 30836
17-03-17 21:34:18.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:18.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30836
17-03-17 21:34:18.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.848 -07 000000415 INF: FPGA: Recv ZSGSRD 30848
17-03-17 21:34:18.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.858 -07 000000626 INF: FPGA: Recv ZSGSRD 30843
17-03-17 21:34:18.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.868 -07 000000480 INF: FPGA: Recv ZSGSRD 30847
17-03-17 21:34:18.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.878 -07 000000576 INF: FPGA: Recv ZSGSRD 30842
17-03-17 21:34:18.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30834
17-03-17 21:34:18.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.898 -07 000000382 INF: FPGA: Recv ZSGSRD 30837
17-03-17 21:34:18.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:18.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:18.908 -07 000000458 INF: FPGA: Recv ZSGSRD 30835
17-03-17 21:34:18.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.918 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:18.918 -07 000000627 INF: FPGA: Recv ZPIEZORD 26887
17-03-17 21:34:18.928 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:18.928 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.615 V. Piezo Error = -8.7 V.
17-03-17 21:34:18.928 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30840 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30840 (-137.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30834 (-137.6 uncal um), Max = 30848 (-137.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:34:18.928 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30840, posNoise = 8, negNoise = 6
17-03-17 21:34:18.928 -07 000000431 INF: Z Motor: After move to -0.138439, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:18.928 -07 000000431 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:34:18.928 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:18.978 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:34:18.978 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:18.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:18.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:18.978 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:18.978 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:18.978 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:18.978 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:18.978 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:18.978 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:18.978 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:18.988 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:18.998 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:34:18.998 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:34:18.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:19.048 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:19.248 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:19.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:19.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:19.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:34:19.278 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:19.288 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:19.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:34:19.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:34:19.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:19.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:19.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:34:19.388 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:19.388 -07 000000626 INF: Autofocus start
17-03-17 21:34:19.388 -07 000000626 INF: MeasureProfile start
17-03-17 21:34:19.398 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:19.398 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 8 ms overall
17-03-17 21:34:19.398 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:19.408 -07 000000626 INF: MeasureProfile done
17-03-17 21:34:19.408 -07 000000626 INF: X=5  Z correction [um]=0.0001036296
17-03-17 21:34:19.408 -07 000000626 INF: Autofocus finished
17-03-17 21:34:19.598 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:19.608 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-17 21:34:19.608 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138446054463043. ----------
17-03-17 21:34:19.608 -07 000000610 INF: Cycle	52	Tile	8	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:19.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28755, sync = True, waitForSettling = True)
17-03-17 21:34:19.608 -07 000000610 INF: Z Motor: Moving to -0.131632 mm, started at -0.138446 mm, distance = 6.81 um
17-03-17 21:34:19.608 -07 000000610 INF: FPGA: Xmit ZDACW 28755\n [Z Motor]
17-03-17 21:34:19.608 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:34:19.618 -07 000000610 INF: FPGA: 'ZDACW 28755' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:19.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:19.618 -07 000000424 INF: FPGA: Recv ZDACR 28755
17-03-17 21:34:19.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.778 -07 000000576 INF: FPGA: Recv ZSGSRD 29784
17-03-17 21:34:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.788 -07 000000512 INF: FPGA: Recv ZSGSRD 29786
17-03-17 21:34:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-17 21:34:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29783
17-03-17 21:34:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29773
17-03-17 21:34:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.828 -07 000000476 INF: FPGA: Recv ZSGSRD 29782
17-03-17 21:34:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.838 -07 000000459 INF: FPGA: Recv ZSGSRD 29783
17-03-17 21:34:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.848 -07 000000431 INF: FPGA: Recv ZSGSRD 29781
17-03-17 21:34:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.858 -07 000000569 INF: FPGA: Recv ZSGSRD 29783
17-03-17 21:34:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:19.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29779
17-03-17 21:34:19.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:19.878 -07 000000608 INF: FPGA: Recv ZPIEZORD 25490
17-03-17 21:34:19.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:19.888 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.4 V.
17-03-17 21:34:19.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29782 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29773 (-130.8 uncal um), Max = 29786 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:34:19.888 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29782, posNoise = 4, negNoise = 9
17-03-17 21:34:19.888 -07 000000610 INF: Z Motor: After move to -0.131632, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:19.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:34:19.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:19.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:19.888 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:19.888 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:19.888 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:19.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:19.888 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:19.888 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:19.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:34:19.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:19.888 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:19.888 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:19.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:34:19.888 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:19.888 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:19.888 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:19.898 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:34:19.898 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:34:19.898 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:34:19.898 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:19.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28932 150\n [Camera]
17-03-17 21:34:20.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:20.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 629
17-03-17 21:34:20.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 629
17-03-17 21:34:20.548 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:20.548 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:20.548 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:34:20.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 629
17-03-17 21:34:20.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 629
17-03-17 21:34:20.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:20.548 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:20.548 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:34:20.728 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28932 819
17-03-17 21:34:20.878 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:20.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:34:20.918 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:34:20.918 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:20.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:34:20.918 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:34:20.918 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:20.928 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:20.928 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:20.928 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:34:20.938 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:34:21.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:21.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:21.098 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:21.208 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:21.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:21.208 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:21.208 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:21.208 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:34:21.208 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:21.208 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:34:21.278 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:21.288 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:21.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28932 150' command took 2 ms to send, 1370 ms to get response, and 1378 ms overall
17-03-17 21:34:21.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:21.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.13164923801706. ------
17-03-17 21:34:21.288 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:21.288 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13803 mm
17-03-17 21:34:21.288 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:21.288 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:34:21.288 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:34:21.298 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30153, sync = True, waitForSettling = False)
17-03-17 21:34:21.298 -07 000000501 INF: Z Motor: Moving to -0.138032 mm, started at -0.131649 mm, distance = -6.38 um
17-03-17 21:34:21.298 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:21.298 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:21.298 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 21:34:21.298 -07 000000431 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:34:21.308 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:21.308 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:21.308 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:21.308 -07 000000480 INF: Y Motor: Moving 1341 steps-18
17-03-17 21:34:21.308 -07 000000501 INF: FPGA: Xmit ZDACW 30153\n [Z Motor]
17-03-17 21:34:21.308 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:34:21.318 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:21.318 -07 000000501 INF: FPGA: 'ZDACW 30153' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:21.328 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:21.338 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:21.338 -07 000000547 INF: FPGA: Recv ZDACR 30153
17-03-17 21:34:21.348 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:21.348 -07 000000501 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:34:21.518 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:21.518 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:34:21.568 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.019446,
17-03-17 21:34:21.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:34:21.598 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:34:21.598 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:21.608 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:34:21.608 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:34:21.608 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:21.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:34:21.608 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 21:34:21.608 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:21.618 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:34:21.698 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:34:21.698 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:34:21.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:21.738 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:34:21.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:21.748 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:21.748 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:34:21.748 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 21:34:21.888 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:21.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:22.698 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:22.698 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:34:22.708 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:22.708 -07 000000480 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:22.728 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:22.728 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:34:22.728 -07 000000480 INF: Y Motor: Moved to 66.5396 after 1435 ms (table move)
17-03-17 21:34:22.728 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138032 mm (DAC = 30153)
17-03-17 21:34:22.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30784
17-03-17 21:34:22.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:34:22.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.738 -07 000000438 INF: FPGA: Recv ZSGSRD 30777
17-03-17 21:34:22.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:22.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.748 -07 000000576 INF: FPGA: Recv ZSGSRD 30770
17-03-17 21:34:22.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.758 -07 000000459 INF: FPGA: Recv ZSGSRD 30775
17-03-17 21:34:22.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.768 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.768 -07 000000501 INF: FPGA: Recv ZSGSRD 30775
17-03-17 21:34:22.778 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.778 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.778 -07 000000458 INF: FPGA: Recv ZSGSRD 30785
17-03-17 21:34:22.788 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.788 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.788 -07 000000424 INF: FPGA: Recv ZSGSRD 30779
17-03-17 21:34:22.798 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.798 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:34:22.808 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.808 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.808 -07 000000608 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:34:22.818 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.818 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:22.818 -07 000000431 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:34:22.828 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.828 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:22.828 -07 000000458 INF: FPGA: Recv ZPIEZORD 26833
17-03-17 21:34:22.838 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:22.838 -07 000000475 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.7 V.
17-03-17 21:34:22.838 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30776 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30769 (-137.2 uncal um), Max = 30785 (-137.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:34:22.838 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30776, posNoise = 9, negNoise = 7
17-03-17 21:34:22.838 -07 000000475 INF: Z Motor: After move to -0.138032, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:22.838 -07 000000475 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:34:22.838 -07 000000475 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:22.888 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:34:22.888 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:22.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:22.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:22.888 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:22.888 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:22.888 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:22.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:22.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:34:22.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:22.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:22.898 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:22.898 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:34:22.898 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:34:22.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:22.948 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:23.148 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:23.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:23.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:23.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 21:34:23.188 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:23.188 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:23.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:34:23.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 21:34:23.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:23.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:23.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:34:23.288 -07 000000459 INF: Autofocus start
17-03-17 21:34:23.288 -07 000000459 INF: MeasureProfile start
17-03-17 21:34:23.288 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:23.298 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:23.298 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:34:23.298 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:23.298 -07 000000459 INF: MeasureProfile done
17-03-17 21:34:23.298 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:34:23.298 -07 000000459 INF: Autofocus finished
17-03-17 21:34:23.498 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:23.498 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:34:23.498 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.13803490488597. ----------
17-03-17 21:34:23.508 -07 000000610 INF: Cycle	52	Tile	9	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:23.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28648, sync = True, waitForSettling = True)
17-03-17 21:34:23.508 -07 000000610 INF: Z Motor: Moving to -0.131142 mm, started at -0.138035 mm, distance = 6.89 um
17-03-17 21:34:23.508 -07 000000610 INF: FPGA: Xmit ZDACW 28648\n [Z Motor]
17-03-17 21:34:23.508 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:34:23.518 -07 000000610 INF: FPGA: 'ZDACW 28648' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:34:23.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:23.518 -07 000000626 INF: FPGA: Recv ZDACR 28648
17-03-17 21:34:23.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29710
17-03-17 21:34:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.688 -07 000000424 INF: FPGA: Recv ZSGSRD 29708
17-03-17 21:34:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.698 -07 000000431 INF: FPGA: Recv ZSGSRD 29699
17-03-17 21:34:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.708 -07 000000576 INF: FPGA: Recv ZSGSRD 29701
17-03-17 21:34:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29705
17-03-17 21:34:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.728 -07 000000501 INF: FPGA: Recv ZSGSRD 29707
17-03-17 21:34:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.738 -07 000000476 INF: FPGA: Recv ZSGSRD 29700
17-03-17 21:34:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.748 -07 000000431 INF: FPGA: Recv ZSGSRD 29704
17-03-17 21:34:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.758 -07 000000627 INF: FPGA: Recv ZSGSRD 29704
17-03-17 21:34:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:23.768 -07 000000626 INF: FPGA: Recv ZSGSRD 29702
17-03-17 21:34:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:23.778 -07 000000475 INF: FPGA: Recv ZPIEZORD 25397
17-03-17 21:34:23.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:23.788 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.5 V.
17-03-17 21:34:23.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29704 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29704 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29699 (-130.3 uncal um), Max = 29710 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:23.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29704, posNoise = 6, negNoise = 5
17-03-17 21:34:23.788 -07 000000610 INF: Z Motor: After move to -0.131142, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:23.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:34:23.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:23.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:23.788 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:23.788 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:23.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:23.788 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:23.788 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:23.788 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:23.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:23.788 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:23.788 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:34:23.788 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:23.798 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:23.798 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:23.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:23.798 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:23.808 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:34:23.808 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:34:23.808 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:34:23.808 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:34:23.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28825 150\n [Camera]
17-03-17 21:34:24.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:24.448 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:24.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:24.448 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:24.458 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:24.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:34:24.458 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:24.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:24.458 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:24.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:24.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:34:24.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28825 819
17-03-17 21:34:24.788 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:24.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:34:24.838 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:34:24.838 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:24.848 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:34:24.848 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:34:24.848 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:24.848 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:24.848 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:34:24.848 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:24.858 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:34:24.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:24.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:24.998 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:25.108 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:25.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:25.108 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:25.108 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:25.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:34:25.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:25.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:34:25.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:25.188 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:25.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28825 150' command took 2 ms to send, 1368 ms to get response, and 1378 ms overall
17-03-17 21:34:25.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:25.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131148149470002. ------
17-03-17 21:34:25.198 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:25.198 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13791 mm
17-03-17 21:34:25.198 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:25.198 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:34:25.198 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 21:34:25.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:25.198 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30127, sync = True, waitForSettling = False)
17-03-17 21:34:25.198 -07 000000576 INF: Z Motor: Moving to -0.137913 mm, started at -0.131148 mm, distance = -6.76 um
17-03-17 21:34:25.208 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:25.208 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:25.208 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:34:25.218 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:34:25.218 -07 000000569 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:25.218 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:25.218 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:34:25.218 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:25.228 -07 000000576 INF: FPGA: Xmit ZDACW 30127\n [Z Motor]
17-03-17 21:34:25.228 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:34:25.238 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:25.238 -07 000000576 INF: FPGA: 'ZDACW 30127' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:34:25.248 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:25.248 -07 000000547 INF: FPGA: Recv ZDACR 30127
17-03-17 21:34:25.258 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:25.258 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:34:25.418 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:25.418 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 21:34:25.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:34:25.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:34:25.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:25.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:34:25.518 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:34:25.518 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:25.518 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:25.518 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 21:34:25.518 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:25.528 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:34:25.608 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:34:25.608 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:34:25.648 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:25.648 -07 000000458 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:34:25.658 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:25.658 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:25.658 -07 000000569 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:34:25.658 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 21:34:26.608 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:26.608 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:34:26.618 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:26.618 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:26.638 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:26.638 -07 000000569 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:26.638 -07 000000569 INF: Y Motor: Moved to 67.3721 after 1438 ms (table move)
17-03-17 21:34:26.638 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137913 mm (DAC = 30127)
17-03-17 21:34:26.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30763
17-03-17 21:34:26.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:34:26.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.648 -07 000000382 INF: FPGA: Recv ZSGSRD 30759
17-03-17 21:34:26.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:26.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.658 -07 000000501 INF: FPGA: Recv ZSGSRD 30763
17-03-17 21:34:26.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.668 -07 000000476 INF: FPGA: Recv ZSGSRD 30765
17-03-17 21:34:26.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30763
17-03-17 21:34:26.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.688 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.688 -07 000000459 INF: FPGA: Recv ZSGSRD 30756
17-03-17 21:34:26.698 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.698 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.698 -07 000000382 INF: FPGA: Recv ZSGSRD 30761
17-03-17 21:34:26.708 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.708 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.708 -07 000000569 INF: FPGA: Recv ZSGSRD 30760
17-03-17 21:34:26.718 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.718 -07 000000512 INF: FPGA: Recv ZSGSRD 30751
17-03-17 21:34:26.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:26.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30757
17-03-17 21:34:26.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.738 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:26.738 -07 000000480 INF: FPGA: Recv ZPIEZORD 26765
17-03-17 21:34:26.748 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:26.748 -07 000000415 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -8.8 V.
17-03-17 21:34:26.748 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30760 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30760 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30751 (-137.1 uncal um), Max = 30765 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:34:26.748 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30760, posNoise = 5, negNoise = 9
17-03-17 21:34:26.748 -07 000000415 INF: Z Motor: After move to -0.137913, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:26.748 -07 000000415 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:34:26.748 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:26.798 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:34:26.798 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:26.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:26.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:26.798 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:26.798 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:26.798 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:26.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:26.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:26.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:26.808 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:26.808 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:26.818 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:34:26.818 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:34:26.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:26.868 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:26.888 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:26.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:26.938 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.039839,
17-03-17 21:34:27.068 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:27.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:27.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:27.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 21:34:27.108 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:27.108 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:27.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:34:27.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:34:27.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:27.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:27.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:34:27.208 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:27.208 -07 000000501 INF: Autofocus start
17-03-17 21:34:27.208 -07 000000501 INF: MeasureProfile start
17-03-17 21:34:27.208 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:27.218 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:27.218 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:27.218 -07 000000501 INF: MeasureProfile done
17-03-17 21:34:27.218 -07 000000501 INF: X=-1  Z correction [um]=-0.008270801
17-03-17 21:34:27.218 -07 000000501 INF: Autofocus finished
17-03-17 21:34:27.418 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:27.418 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:27.418 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137932117491702. ----------
17-03-17 21:34:27.418 -07 000000610 INF: Cycle	52	Tile	10	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:27.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28638, sync = True, waitForSettling = True)
17-03-17 21:34:27.428 -07 000000610 INF: Z Motor: Moving to -0.131096 mm, started at -0.137932 mm, distance = 6.84 um
17-03-17 21:34:27.428 -07 000000610 INF: FPGA: Xmit ZDACW 28638\n [Z Motor]
17-03-17 21:34:27.428 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:34:27.438 -07 000000610 INF: FPGA: 'ZDACW 28638' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:27.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:27.438 -07 000000415 INF: FPGA: Recv ZDACR 28638
17-03-17 21:34:27.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29697
17-03-17 21:34:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.608 -07 000000480 INF: FPGA: Recv ZSGSRD 29695
17-03-17 21:34:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29698
17-03-17 21:34:27.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29687
17-03-17 21:34:27.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29702
17-03-17 21:34:27.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.648 -07 000000475 INF: FPGA: Recv ZSGSRD 29696
17-03-17 21:34:27.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.658 -07 000000012 INF: FPGA: Recv ZSGSRD 29695
17-03-17 21:34:27.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.668 -07 000000476 INF: FPGA: Recv ZSGSRD 29700
17-03-17 21:34:27.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.678 -07 000000627 INF: FPGA: Recv ZSGSRD 29695
17-03-17 21:34:27.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:27.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29700
17-03-17 21:34:27.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:27.698 -07 000000429 INF: FPGA: Recv ZPIEZORD 25376
17-03-17 21:34:27.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:27.708 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 21:34:27.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29696 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29687 (-130.3 uncal um), Max = 29702 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:34:27.708 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29696, posNoise = 6, negNoise = 9
17-03-17 21:34:27.708 -07 000000610 INF: Z Motor: After move to -0.131096, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:27.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:34:27.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:27.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:27.708 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:27.708 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:27.708 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:27.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:27.708 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:27.708 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:27.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:27.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:27.708 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:27.708 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:27.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:34:27.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:27.718 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:27.718 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:27.728 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:34:27.728 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:34:27.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:34:27.728 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:34:27.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28814 150\n [Camera]
17-03-17 21:34:27.928 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:28.358 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:28.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:28.358 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:28.358 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:28.358 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:34:28.368 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:28.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:28.368 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:28.368 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:28.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:34:28.558 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28814 819
17-03-17 21:34:28.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:28.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:34:28.738 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:34:28.738 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:28.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:34:28.738 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:34:28.738 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:28.748 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:34:28.748 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:34:28.748 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:28.748 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:34:28.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:28.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:29.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:29.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:29.028 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:29.028 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:29.028 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:29.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:34:29.028 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:29.028 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:34:29.108 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:29.108 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:29.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28814 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-17 21:34:29.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:29.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.131096755772868. ------
17-03-17 21:34:29.108 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:29.108 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13757 mm
17-03-17 21:34:29.108 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:29.118 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:29.118 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:34:29.118 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:29.118 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:34:29.118 -07 000000475 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 21:34:29.118 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 21:34:29.118 -07 000000012 INF: Z Motor: Moving to -0.137569 mm, started at -0.131097 mm, distance = -6.47 um
17-03-17 21:34:29.128 -07 000000012 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 21:34:29.128 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:34:29.138 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:29.138 -07 000000012 INF: FPGA: 'ZDACW 30052' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:34:29.138 -07 000000459 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:34:29.148 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:34:29.148 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:29.148 -07 000000475 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:29.148 -07 000000458 INF: FPGA: Recv ZDACR 30052
17-03-17 21:34:29.148 -07 000000475 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:29.148 -07 000000475 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:34:29.158 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:29.158 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:29.158 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:34:29.318 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:29.318 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:34:29.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:34:29.418 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:34:29.418 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:29.418 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:29.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:34:29.428 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:34:29.428 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:29.428 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:34:29.428 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:29.428 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:34:29.528 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:34:29.528 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:34:29.568 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:29.568 -07 000000576 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:34:29.578 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:29.578 -07 000000475 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:29.578 -07 000000475 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:34:29.578 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-17 21:34:30.528 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:30.528 -07 000000626 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:34:30.538 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:30.538 -07 000000475 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:30.558 -07 000000475 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:30.558 -07 000000475 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:30.558 -07 000000475 INF: Y Motor: Moved to 68.2051 after 1439 ms (table move)
17-03-17 21:34:30.558 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 21:34:30.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.558 -07 000000459 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:34:30.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:30.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.568 -07 000000626 INF: FPGA: Recv ZSGSRD 30702
17-03-17 21:34:30.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.578 -07 000000476 INF: FPGA: Recv ZSGSRD 30705
17-03-17 21:34:30.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.588 -07 000000627 INF: FPGA: Recv ZSGSRD 30711
17-03-17 21:34:30.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.598 -07 000000458 INF: FPGA: Recv ZSGSRD 30707
17-03-17 21:34:30.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.608 -07 000000438 INF: FPGA: Recv ZSGSRD 30705
17-03-17 21:34:30.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.618 -07 000000626 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:34:30.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.628 -07 000000480 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:34:30.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.638 -07 000000459 INF: FPGA: Recv ZSGSRD 30696
17-03-17 21:34:30.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:30.648 -07 000000475 INF: FPGA: Recv ZSGSRD 30707
17-03-17 21:34:30.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.658 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:30.658 -07 000000438 INF: FPGA: Recv ZPIEZORD 26705
17-03-17 21:34:30.668 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:30.668 -07 000000415 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -8.8 V.
17-03-17 21:34:30.668 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30704 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30704 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30696 (-136.7 uncal um), Max = 30711 (-136.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:34:30.668 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30704, posNoise = 7, negNoise = 8
17-03-17 21:34:30.668 -07 000000415 INF: Z Motor: After move to -0.137569, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:30.668 -07 000000415 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:34:30.668 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:30.718 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 21:34:30.718 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:30.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:30.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:30.718 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:30.718 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:30.718 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:30.718 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:30.718 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:30.718 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:30.728 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:30.728 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:30.738 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:34:30.738 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:34:30.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:30.788 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:30.988 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:30.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:30.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:30.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 21:34:31.028 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:31.028 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:31.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 21:34:31.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:34:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:31.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:31.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:34:31.128 -07 000000501 INF: Autofocus start
17-03-17 21:34:31.128 -07 000000501 INF: MeasureProfile start
17-03-17 21:34:31.128 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:31.128 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:31.138 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:31.138 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:31.138 -07 000000501 INF: MeasureProfile done
17-03-17 21:34:31.138 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:34:31.138 -07 000000501 INF: Autofocus finished
17-03-17 21:34:31.338 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:31.338 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:31.338 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137572361611763. ----------
17-03-17 21:34:31.348 -07 000000610 INF: Cycle	52	Tile	11	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:31.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28576, sync = True, waitForSettling = True)
17-03-17 21:34:31.348 -07 000000610 INF: Z Motor: Moving to -0.130813 mm, started at -0.137572 mm, distance = 6.76 um
17-03-17 21:34:31.348 -07 000000610 INF: FPGA: Xmit ZDACW 28576\n [Z Motor]
17-03-17 21:34:31.348 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:34:31.358 -07 000000610 INF: FPGA: 'ZDACW 28576' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:31.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:31.358 -07 000000627 INF: FPGA: Recv ZDACR 28576
17-03-17 21:34:31.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:31.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29652
17-03-17 21:34:31.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:31.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.528 -07 000000475 INF: FPGA: Recv ZSGSRD 29657
17-03-17 21:34:31.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29655
17-03-17 21:34:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.548 -07 000000382 INF: FPGA: Recv ZSGSRD 29653
17-03-17 21:34:31.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.558 -07 000000547 INF: FPGA: Recv ZSGSRD 29652
17-03-17 21:34:31.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.568 -07 000000458 INF: FPGA: Recv ZSGSRD 29649
17-03-17 21:34:31.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.578 -07 000000501 INF: FPGA: Recv ZSGSRD 29653
17-03-17 21:34:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29650
17-03-17 21:34:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29647
17-03-17 21:34:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:31.608 -07 000000438 INF: FPGA: Recv ZSGSRD 29652
17-03-17 21:34:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:31.618 -07 000000626 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 21:34:31.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:31.628 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.4 V.
17-03-17 21:34:31.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29652 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29647 (-130.0 uncal um), Max = 29657 (-130.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:31.628 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29652, posNoise = 5, negNoise = 5
17-03-17 21:34:31.628 -07 000000610 INF: Z Motor: After move to -0.130813, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:31.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:34:31.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:31.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:31.628 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:31.628 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:31.628 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:31.628 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:31.628 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:31.628 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:31.628 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:34:31.628 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:31.628 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:31.628 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:31.628 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:31.638 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:31.638 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:31.638 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:31.638 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:34:31.638 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:34:31.648 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:34:31.648 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:34:31.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28753 150\n [Camera]
17-03-17 21:34:31.848 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:31.888 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:31.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:32.278 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:32.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:32.288 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:32.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:32.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:34:32.288 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:32.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:32.288 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:32.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:32.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:34:32.308 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.014009,
17-03-17 21:34:32.478 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28753 819
17-03-17 21:34:32.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:32.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:34:32.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:34:32.658 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:32.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:34:32.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:34:32.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:32.668 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:32.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:32.668 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:34:32.678 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:34:32.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:32.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:32.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:32.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:32.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:32.838 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:32.838 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:32.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) start.
17-03-17 21:34:32.838 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:32.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:34:33.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:33.028 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:33.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28753 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:34:33.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:33.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130814090438631. ------
17-03-17 21:34:33.028 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:33.028 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13746 mm
17-03-17 21:34:33.028 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:33.038 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:34:33.038 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30028, sync = True, waitForSettling = False)
17-03-17 21:34:33.038 -07 000000458 INF: Z Motor: Moving to -0.137459 mm, started at -0.130814 mm, distance = -6.65 um
17-03-17 21:34:33.038 -07 000000458 INF: FPGA: Xmit ZDACW 30028\n [Z Motor]
17-03-17 21:34:33.038 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:33.038 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:33.038 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 21:34:33.038 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:34:33.048 -07 000000458 INF: FPGA: 'ZDACW 30028' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:33.048 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:33.048 -07 000000576 INF: FPGA: Recv ZDACR 30028
17-03-17 21:34:33.058 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:33.058 -07 000000458 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 21:34:33.058 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:33.058 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:34:33.068 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:33.068 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:34:33.068 -07 000000569 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:33.068 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:33.068 -07 000000569 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:34:33.078 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:33.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:34:33.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:34:33.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:33.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2233535248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:34:33.238 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:34:33.238 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:33.248 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:33.248 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:34:33.248 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:33.258 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:34:33.268 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:33.268 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 233 ms overall
17-03-17 21:34:33.448 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:34:33.448 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:34:33.488 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:33.488 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:34:33.498 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:33.498 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:33.498 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:34:33.498 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.181 mm/sec
17-03-17 21:34:34.448 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:34.448 -07 000000459 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:34:34.458 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:34.458 -07 000000569 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:34.478 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:34.478 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:34:34.478 -07 000000569 INF: Y Motor: Moved to 69.0278 after 1443 ms (table move)
17-03-17 21:34:34.478 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137459 mm (DAC = 30028)
17-03-17 21:34:34.478 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.488 -07 000000431 INF: FPGA: Recv ZSGSRD 30692
17-03-17 21:34:34.488 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:34.488 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.488 -07 000000459 INF: FPGA: Recv ZSGSRD 30683
17-03-17 21:34:34.498 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.498 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30676
17-03-17 21:34:34.508 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.508 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.508 -07 000000608 INF: FPGA: Recv ZSGSRD 30696
17-03-17 21:34:34.518 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.518 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.518 -07 000000476 INF: FPGA: Recv ZSGSRD 30693
17-03-17 21:34:34.528 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.528 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.528 -07 000000429 INF: FPGA: Recv ZSGSRD 30690
17-03-17 21:34:34.538 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.538 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.538 -07 000000476 INF: FPGA: Recv ZSGSRD 30688
17-03-17 21:34:34.548 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.548 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.548 -07 000000608 INF: FPGA: Recv ZSGSRD 30683
17-03-17 21:34:34.558 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.558 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.558 -07 000000424 INF: FPGA: Recv ZSGSRD 30684
17-03-17 21:34:34.568 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.568 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:34.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30688
17-03-17 21:34:34.578 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.578 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:34.578 -07 000000012 INF: FPGA: Recv ZPIEZORD 26721
17-03-17 21:34:34.588 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:34.588 -07 000000480 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -8.7 V.
17-03-17 21:34:34.588 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30687 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30676 (-136.6 uncal um), Max = 30696 (-136.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:34:34.588 -07 000000480 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30687, posNoise = 9, negNoise = 11
17-03-17 21:34:34.588 -07 000000480 INF: Z Motor: After move to -0.137459, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:34.588 -07 000000480 INF: Z Motor: Settle wait time = 1447 ms, measure time = 103 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:34:34.588 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:34.638 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:34:34.638 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:34.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:34.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:34.638 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:34.638 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:34.638 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:34.638 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:34.638 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:34.638 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:34.648 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:34:34.648 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:34.658 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:34:34.658 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:34:34.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:34.708 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:34.908 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:34.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:34.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:34.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:34:34.948 -07 000000459 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:34:34.948 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:34.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 21:34:35.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:34:35.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:35.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:34:35.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:34:35.048 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:35.048 -07 000000480 INF: Autofocus start
17-03-17 21:34:35.048 -07 000000480 INF: MeasureProfile start
17-03-17 21:34:35.048 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:35.058 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:35.058 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:35.058 -07 000000480 INF: MeasureProfile done
17-03-17 21:34:35.058 -07 000000480 INF: X=9  Z correction [um]=0.01934518
17-03-17 21:34:35.058 -07 000000480 INF: Autofocus finished
17-03-17 21:34:35.258 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:35.258 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:35.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137463150005353. ----------
17-03-17 21:34:35.258 -07 000000610 INF: Cycle	52	Tile	12	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:35.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28545, sync = True, waitForSettling = True)
17-03-17 21:34:35.268 -07 000000610 INF: Z Motor: Moving to -0.130671 mm, started at -0.137463 mm, distance = 6.79 um
17-03-17 21:34:35.268 -07 000000610 INF: FPGA: Xmit ZDACW 28545\n [Z Motor]
17-03-17 21:34:35.268 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:34:35.278 -07 000000610 INF: FPGA: 'ZDACW 28545' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:35.278 -07 000000382 INF: FPGA: Recv ZDACR 28545
17-03-17 21:34:35.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:35.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29631
17-03-17 21:34:35.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.448 -07 000000576 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:34:35.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.458 -07 000000458 INF: FPGA: Recv ZSGSRD 29631
17-03-17 21:34:35.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.468 -07 000000429 INF: FPGA: Recv ZSGSRD 29628
17-03-17 21:34:35.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29631
17-03-17 21:34:35.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.488 -07 000000012 INF: FPGA: Recv ZSGSRD 29634
17-03-17 21:34:35.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.498 -07 000000475 INF: FPGA: Recv ZSGSRD 29626
17-03-17 21:34:35.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.508 -07 000000431 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:34:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.518 -07 000000627 INF: FPGA: Recv ZSGSRD 29631
17-03-17 21:34:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:35.528 -07 000000512 INF: FPGA: Recv ZSGSRD 29634
17-03-17 21:34:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:35.538 -07 000000415 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 21:34:35.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:35.548 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.4 V.
17-03-17 21:34:35.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29631 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29631 (-129.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29626 (-129.9 uncal um), Max = 29634 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:35.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29631, posNoise = 3, negNoise = 5
17-03-17 21:34:35.548 -07 000000610 INF: Z Motor: After move to -0.130671, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:35.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:34:35.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:35.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:35.548 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:35.548 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:35.548 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:35.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:35.548 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:35.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:35.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:35.548 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:35.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:34:35.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:35.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:35.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:35.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:35.558 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:35.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:34:35.558 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:35.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:34:35.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:34:35.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28722 150\n [Camera]
17-03-17 21:34:35.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:36.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 627
17-03-17 21:34:36.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 627
17-03-17 21:34:36.198 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:36.198 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:36.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:34:36.208 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 627
17-03-17 21:34:36.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 627
17-03-17 21:34:36.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:36.208 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:36.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:34:36.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28722 819
17-03-17 21:34:36.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:36.588 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:34:36.588 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:34:36.588 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:36.588 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:34:36.588 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:34:36.588 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:36.588 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:36.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:34:36.588 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:36.598 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:34:36.748 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:36.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:36.868 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:36.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:36.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:36.868 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:36.868 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:36.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:34:36.878 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:36.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:34:36.888 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:36.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:36.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1374
17-03-17 21:34:36.948 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:36.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28722 150' command took 2 ms to send, 1373 ms to get response, and 1381 ms overall
17-03-17 21:34:36.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:36.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130679181983654. ------
17-03-17 21:34:36.948 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:36.948 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13711 mm
17-03-17 21:34:36.948 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:36.958 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:36.958 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:34:36.958 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29951, sync = True, waitForSettling = False)
17-03-17 21:34:36.958 -07 000000424 INF: Z Motor: Moving to -0.137107 mm, started at -0.130679 mm, distance = -6.43 um
17-03-17 21:34:36.958 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:34:36.958 -07 000000382 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 21:34:36.958 -07 000000424 INF: FPGA: Xmit ZDACW 29951\n [Z Motor]
17-03-17 21:34:36.958 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:34:36.968 -07 000000424 INF: FPGA: 'ZDACW 29951' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:36.968 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:36.968 -07 000000626 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:34:36.978 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:34:36.978 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:36.978 -07 000000382 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:36.978 -07 000000382 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:34:36.978 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:36.988 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:36.988 -07 000000626 INF: FPGA: Recv ZDACR 29951
17-03-17 21:34:36.998 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:36.998 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:36.998 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:34:37.178 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:37.178 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 21:34:37.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:34:37.268 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:34:37.268 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:37.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:34:37.268 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:34:37.268 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:37.268 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:37.278 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:37.278 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:34:37.278 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:34:37.378 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:34:37.378 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 21:34:37.408 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:37.418 -07 000000512 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:34:37.418 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:34:37.418 -07 000000382 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:37.418 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:34:37.418 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.112 mm/sec
17-03-17 21:34:37.678 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471,
17-03-17 21:34:38.368 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:38.368 -07 000000459 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:34:38.378 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:38.378 -07 000000382 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:38.398 -07 000000382 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:38.398 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:38.398 -07 000000382 INF: Y Motor: Moved to 69.8638 after 1441 ms (table move)
17-03-17 21:34:38.398 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137107 mm (DAC = 29951)
17-03-17 21:34:38.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.408 -07 000000608 INF: FPGA: Recv ZSGSRD 30637
17-03-17 21:34:38.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:38.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30633
17-03-17 21:34:38.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.418 -07 000000626 INF: FPGA: Recv ZSGSRD 30632
17-03-17 21:34:38.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.428 -07 000000424 INF: FPGA: Recv ZSGSRD 30625
17-03-17 21:34:38.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30627
17-03-17 21:34:38.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.448 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.448 -07 000000501 INF: FPGA: Recv ZSGSRD 30630
17-03-17 21:34:38.458 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.458 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.458 -07 000000424 INF: FPGA: Recv ZSGSRD 30633
17-03-17 21:34:38.468 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.468 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.468 -07 000000431 INF: FPGA: Recv ZSGSRD 30639
17-03-17 21:34:38.478 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.478 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.478 -07 000000012 INF: FPGA: Recv ZSGSRD 30636
17-03-17 21:34:38.488 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.488 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:38.488 -07 000000415 INF: FPGA: Recv ZSGSRD 30631
17-03-17 21:34:38.498 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.498 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:38.498 -07 000000547 INF: FPGA: Recv ZPIEZORD 26660
17-03-17 21:34:38.508 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:38.508 -07 000000569 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -8.7 V.
17-03-17 21:34:38.508 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30632 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30632 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30625 (-136.3 uncal um), Max = 30639 (-136.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:34:38.508 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30632, posNoise = 7, negNoise = 7
17-03-17 21:34:38.508 -07 000000569 INF: Z Motor: After move to -0.137107, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:38.508 -07 000000569 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:34:38.508 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:38.558 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 21:34:38.558 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:38.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:38.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:38.558 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:38.558 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:38.558 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:38.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:38.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:38.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:38.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:38.568 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:38.578 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:34:38.578 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:34:38.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:38.628 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:38.828 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:38.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:38.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:38.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:34:38.868 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:38.868 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:38.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:34:38.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:34:38.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:38.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:38.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:34:38.968 -07 000000576 INF: Autofocus start
17-03-17 21:34:38.968 -07 000000576 INF: MeasureProfile start
17-03-17 21:34:38.968 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:38.968 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:38.978 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:34:38.978 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:38.978 -07 000000576 INF: MeasureProfile done
17-03-17 21:34:38.978 -07 000000576 INF: X=-4  Z correction [um]=-0.02287426
17-03-17 21:34:38.978 -07 000000576 INF: Autofocus finished
17-03-17 21:34:39.178 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:39.178 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:39.178 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.137109818337557. ----------
17-03-17 21:34:39.178 -07 000000610 INF: Cycle	52	Tile	13	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:39.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28459, sync = True, waitForSettling = True)
17-03-17 21:34:39.188 -07 000000610 INF: Z Motor: Moving to -0.130277 mm, started at -0.137110 mm, distance = 6.83 um
17-03-17 21:34:39.188 -07 000000610 INF: FPGA: Xmit ZDACW 28459\n [Z Motor]
17-03-17 21:34:39.188 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:34:39.198 -07 000000610 INF: FPGA: 'ZDACW 28459' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:34:39.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:39.198 -07 000000627 INF: FPGA: Recv ZDACR 28459
17-03-17 21:34:39.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.358 -07 000000512 INF: FPGA: Recv ZSGSRD 29569
17-03-17 21:34:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29570
17-03-17 21:34:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.378 -07 000000608 INF: FPGA: Recv ZSGSRD 29567
17-03-17 21:34:39.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29569
17-03-17 21:34:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.398 -07 000000547 INF: FPGA: Recv ZSGSRD 29569
17-03-17 21:34:39.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29565
17-03-17 21:34:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29566
17-03-17 21:34:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.428 -07 000000480 INF: FPGA: Recv ZSGSRD 29571
17-03-17 21:34:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29567
17-03-17 21:34:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:39.448 -07 000000480 INF: FPGA: Recv ZSGSRD 29569
17-03-17 21:34:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:39.458 -07 000000569 INF: FPGA: Recv ZPIEZORD 25304
17-03-17 21:34:39.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:39.468 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.4 V.
17-03-17 21:34:39.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29568 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29569 (-129.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29565 (-129.5 uncal um), Max = 29571 (-129.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:34:39.468 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29568, posNoise = 3, negNoise = 3
17-03-17 21:34:39.468 -07 000000610 INF: Z Motor: After move to -0.130277, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:39.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:34:39.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:39.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:39.468 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:39.468 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:39.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:39.468 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:39.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:34:39.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:39.468 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:39.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:39.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:39.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:39.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:34:39.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:39.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:39.478 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:39.488 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:34:39.488 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:34:39.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:34:39.488 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:34:39.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28636 150\n [Camera]
17-03-17 21:34:39.698 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:40.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:40.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:40.128 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:40.128 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:40.128 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:34:40.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:40.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:40.128 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:40.128 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:40.128 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:34:40.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28636 819
17-03-17 21:34:40.468 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:40.508 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:34:40.508 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:34:40.508 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:40.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:34:40.518 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:34:40.518 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:40.518 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:40.518 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:34:40.518 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:40.528 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:34:40.678 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:40.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:40.678 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:40.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:40.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:40.688 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:40.688 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:40.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:34:40.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:40.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:34:40.868 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:34:40.868 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:40.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28636 150' command took 2 ms to send, 1369 ms to get response, and 1378 ms overall
17-03-17 21:34:40.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:40.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130274456618723. ------
17-03-17 21:34:40.878 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:40.878 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13665 mm
17-03-17 21:34:40.878 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:40.878 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:40.878 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:34:40.878 -07 000000012 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 21:34:40.878 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29851, sync = True, waitForSettling = False)
17-03-17 21:34:40.878 -07 000000475 INF: Z Motor: Moving to -0.136649 mm, started at -0.130274 mm, distance = -6.37 um
17-03-17 21:34:40.888 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:40.888 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:40.888 -07 000000424 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:34:40.898 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:40.898 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:40.898 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:40.898 -07 000000012 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:40.898 -07 000000012 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:34:40.908 -07 000000475 INF: FPGA: Xmit ZDACW 29851\n [Z Motor]
17-03-17 21:34:40.908 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:34:40.918 -07 000000475 INF: FPGA: 'ZDACW 29851' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:34:40.918 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:40.928 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:40.928 -07 000000627 INF: FPGA: Recv ZDACR 29851
17-03-17 21:34:40.938 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:40.938 -07 000000475 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:34:41.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:34:41.068 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:34:41.068 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:41.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:34:41.078 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:34:41.078 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:41.078 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:41.078 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:41.078 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:34:41.088 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:34:41.098 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:41.098 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 21:34:41.288 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:34:41.328 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 405 ms to get response, and 434 ms overall
17-03-17 21:34:41.368 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:41.368 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:34:41.378 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:34:41.378 -07 000000012 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:41.378 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:34:41.378 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 435 ms, distance = 0.839 mm, average velocity = 1.928 mm/sec
17-03-17 21:34:41.888 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:41.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:42.328 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:42.328 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:34:42.338 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:42.338 -07 000000012 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:42.358 -07 000000012 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:42.358 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:42.358 -07 000000012 INF: Y Motor: Moved to 70.6890 after 1475 ms (table move)
17-03-17 21:34:42.358 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136649 mm (DAC = 29851)
17-03-17 21:34:42.358 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.368 -07 000000429 INF: FPGA: Recv ZSGSRD 30558
17-03-17 21:34:42.368 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:42.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.368 -07 000000424 INF: FPGA: Recv ZSGSRD 30568
17-03-17 21:34:42.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.378 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.378 -07 000000438 INF: FPGA: Recv ZSGSRD 30557
17-03-17 21:34:42.388 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.388 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30557
17-03-17 21:34:42.398 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.398 -07 000000512 INF: FPGA: Recv ZSGSRD 30555
17-03-17 21:34:42.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.408 -07 000000480 INF: FPGA: Recv ZSGSRD 30555
17-03-17 21:34:42.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.418 -07 000000501 INF: FPGA: Recv ZSGSRD 30567
17-03-17 21:34:42.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.428 -07 000000459 INF: FPGA: Recv ZSGSRD 30563
17-03-17 21:34:42.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.438 -07 000000626 INF: FPGA: Recv ZSGSRD 30558
17-03-17 21:34:42.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.448 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:42.448 -07 000000424 INF: FPGA: Recv ZSGSRD 30560
17-03-17 21:34:42.458 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.458 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:42.458 -07 000000576 INF: FPGA: Recv ZPIEZORD 26616
17-03-17 21:34:42.468 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:42.468 -07 000000569 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.7 V.
17-03-17 21:34:42.468 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30560 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30558 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30555 (-135.8 uncal um), Max = 30568 (-135.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:42.468 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30560, posNoise = 8, negNoise = 5
17-03-17 21:34:42.468 -07 000000569 INF: Z Motor: After move to -0.136649, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:42.468 -07 000000569 INF: Z Motor: Settle wait time = 1477 ms, measure time = 104 ms (allowed 150 ms), total time = 1581 ms
17-03-17 21:34:42.468 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:42.518 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-17 21:34:42.518 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:42.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:42.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:42.518 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:42.518 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:42.518 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:42.518 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:42.518 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:42.518 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:42.528 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:42.528 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:42.538 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:34:42.538 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:34:42.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:42.588 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:42.788 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:42.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:42.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:42.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199916248, 0x0, 559484976) start.
17-03-17 21:34:42.828 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:42.828 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:42.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 21:34:42.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199916248, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:34:42.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:42.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:42.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:34:42.928 -07 000000475 INF: Autofocus start
17-03-17 21:34:42.928 -07 000000475 INF: MeasureProfile start
17-03-17 21:34:42.928 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:42.928 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:42.938 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:42.938 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:42.938 -07 000000475 INF: MeasureProfile done
17-03-17 21:34:42.938 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:34:42.938 -07 000000475 INF: Autofocus finished
17-03-17 21:34:43.048 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.979922,
17-03-17 21:34:43.138 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:43.138 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:43.138 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.13664727506335. ----------
17-03-17 21:34:43.138 -07 000000610 INF: Cycle	52	Tile	14	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:43.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28358, sync = True, waitForSettling = True)
17-03-17 21:34:43.148 -07 000000610 INF: Z Motor: Moving to -0.129815 mm, started at -0.136647 mm, distance = 6.83 um
17-03-17 21:34:43.148 -07 000000610 INF: FPGA: Xmit ZDACW 28358\n [Z Motor]
17-03-17 21:34:43.148 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:34:43.158 -07 000000610 INF: FPGA: 'ZDACW 28358' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:43.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:43.158 -07 000000608 INF: FPGA: Recv ZDACR 28358
17-03-17 21:34:43.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:43.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.318 -07 000000480 INF: FPGA: Recv ZSGSRD 29501
17-03-17 21:34:43.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:43.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.328 -07 000000429 INF: FPGA: Recv ZSGSRD 29496
17-03-17 21:34:43.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.338 -07 000000475 INF: FPGA: Recv ZSGSRD 29489
17-03-17 21:34:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.348 -07 000000512 INF: FPGA: Recv ZSGSRD 29488
17-03-17 21:34:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:43.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.368 -07 000000626 INF: FPGA: Recv ZSGSRD 29495
17-03-17 21:34:43.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:43.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.378 -07 000000415 INF: FPGA: Recv ZSGSRD 29502
17-03-17 21:34:43.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.408 -07 000000512 INF: FPGA: Recv ZSGSRD 29498
17-03-17 21:34:43.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:43.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.418 -07 000000382 INF: FPGA: Recv ZSGSRD 29493
17-03-17 21:34:43.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29501
17-03-17 21:34:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:43.458 -07 000000382 INF: FPGA: Recv ZSGSRD 29502
17-03-17 21:34:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:43.468 -07 000000459 INF: FPGA: Recv ZPIEZORD 25256
17-03-17 21:34:43.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:43.478 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.3 V.
17-03-17 21:34:43.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29496 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29497 (-129.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29488 (-129.0 uncal um), Max = 29502 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:34:43.478 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29496, posNoise = 6, negNoise = 8
17-03-17 21:34:43.478 -07 000000610 INF: Z Motor: After move to -0.129815, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:43.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 21:34:43.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:43.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:43.478 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:43.478 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:43.478 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:43.478 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:43.478 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:43.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:43.478 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:43.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:43.478 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:43.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:43.488 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:43.488 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:43.488 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:43.488 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:43.498 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:34:43.498 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:43.498 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:34:43.498 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:43.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28535 150\n [Camera]
17-03-17 21:34:43.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:44.128 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:44.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:44.128 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:44.128 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:44.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:34:44.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:44.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:44.138 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:44.138 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:44.138 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:34:44.328 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28535 819
17-03-17 21:34:44.468 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:44.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:34:44.508 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:34:44.508 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:44.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:34:44.518 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:34:44.518 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:44.518 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:44.518 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:34:44.518 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:44.528 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:34:44.678 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:44.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:44.688 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:44.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:44.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:44.688 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:44.688 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:44.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:34:44.698 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:44.698 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:34:44.878 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:44.878 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:44.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28535 150' command took 2 ms to send, 1371 ms to get response, and 1378 ms overall
17-03-17 21:34:44.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:44.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129811913344516. ------
17-03-17 21:34:44.878 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:44.878 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13606 mm
17-03-17 21:34:44.878 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:44.878 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:44.888 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:44.888 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:44.888 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29722, sync = True, waitForSettling = False)
17-03-17 21:34:44.888 -07 000000458 INF: Z Motor: Moving to -0.136059 mm, started at -0.129812 mm, distance = -6.25 um
17-03-17 21:34:44.888 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:34:44.888 -07 000000382 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 21:34:44.898 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:44.898 -07 000000608 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:34:44.908 -07 000000458 INF: FPGA: Xmit ZDACW 29722\n [Z Motor]
17-03-17 21:34:44.908 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:34:44.908 -07 000000382 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:44.908 -07 000000382 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:44.908 -07 000000382 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:34:44.908 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:34:44.918 -07 000000458 INF: FPGA: 'ZDACW 29722' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:34:44.918 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:44.928 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:44.928 -07 000000415 INF: FPGA: Recv ZDACR 29722
17-03-17 21:34:44.938 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:44.938 -07 000000458 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:34:45.078 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:34:45.078 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:34:45.078 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:45.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:34:45.078 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:34:45.078 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:45.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:45.078 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:45.078 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:34:45.088 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:45.088 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:45.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:34:45.288 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:34:45.288 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:34:45.328 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:45.328 -07 000000459 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:34:45.338 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:34:45.338 -07 000000382 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:45.338 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:34:45.338 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-17 21:34:46.288 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:46.288 -07 000000012 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:34:46.298 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:46.298 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:46.318 -07 000000382 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:46.318 -07 000000382 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:34:46.318 -07 000000382 INF: Y Motor: Moved to 71.5195 after 1430 ms (table move)
17-03-17 21:34:46.318 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136059 mm (DAC = 29722)
17-03-17 21:34:46.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30472
17-03-17 21:34:46.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:46.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.328 -07 000000626 INF: FPGA: Recv ZSGSRD 30469
17-03-17 21:34:46.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.338 -07 000000415 INF: FPGA: Recv ZSGSRD 30466
17-03-17 21:34:46.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.348 -07 000000438 INF: FPGA: Recv ZSGSRD 30467
17-03-17 21:34:46.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.358 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.358 -07 000000382 INF: FPGA: Recv ZSGSRD 30475
17-03-17 21:34:46.368 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.368 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.368 -07 000000512 INF: FPGA: Recv ZSGSRD 30470
17-03-17 21:34:46.378 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.378 -07 000000424 INF: FPGA: Recv ZSGSRD 30471
17-03-17 21:34:46.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.388 -07 000000480 INF: FPGA: Recv ZSGSRD 30463
17-03-17 21:34:46.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.398 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.398 -07 000000431 INF: FPGA: Recv ZSGSRD 30470
17-03-17 21:34:46.408 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:46.408 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:46.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30464
17-03-17 21:34:46.418 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.418 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:46.418 -07 000000547 INF: FPGA: Recv ZPIEZORD 26487
17-03-17 21:34:46.428 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:46.428 -07 000000476 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.535 V. Piezo Error = -8.8 V.
17-03-17 21:34:46.428 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30469 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30470 (-135.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30463 (-135.2 uncal um), Max = 30475 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:34:46.428 -07 000000476 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30469, posNoise = 6, negNoise = 6
17-03-17 21:34:46.428 -07 000000476 INF: Z Motor: After move to -0.136059, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:46.428 -07 000000476 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:34:46.428 -07 000000476 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:46.478 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:34:46.478 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:46.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:46.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:46.478 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:46.478 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:46.478 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:46.478 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:46.478 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:46.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:46.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:46.488 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:46.498 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:34:46.498 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:34:46.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:46.538 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:46.738 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:46.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:46.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:46.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:34:46.778 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:46.778 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:46.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:34:46.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:34:46.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:46.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:46.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:34:46.888 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:46.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:46.978 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:46.978 -07 000000382 INF: Autofocus start
17-03-17 21:34:46.978 -07 000000382 INF: MeasureProfile start
17-03-17 21:34:46.978 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:46.988 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:46.988 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:46.988 -07 000000382 INF: MeasureProfile done
17-03-17 21:34:46.988 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:34:46.988 -07 000000382 INF: Autofocus finished
17-03-17 21:34:47.188 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:47.188 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:47.188 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.13606267175845. ----------
17-03-17 21:34:47.188 -07 000000610 INF: Cycle	52	Tile	15	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:47.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28230, sync = True, waitForSettling = True)
17-03-17 21:34:47.198 -07 000000610 INF: Z Motor: Moving to -0.129229 mm, started at -0.136063 mm, distance = 6.83 um
17-03-17 21:34:47.198 -07 000000610 INF: FPGA: Xmit ZDACW 28230\n [Z Motor]
17-03-17 21:34:47.198 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:34:47.208 -07 000000610 INF: FPGA: 'ZDACW 28230' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:47.208 -07 000000458 INF: FPGA: Recv ZDACR 28230
17-03-17 21:34:47.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.368 -07 000000569 INF: FPGA: Recv ZSGSRD 29407
17-03-17 21:34:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.378 -07 000000576 INF: FPGA: Recv ZSGSRD 29404
17-03-17 21:34:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.388 -07 000000476 INF: FPGA: Recv ZSGSRD 29409
17-03-17 21:34:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.398 -07 000000501 INF: FPGA: Recv ZSGSRD 29404
17-03-17 21:34:47.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.408 -07 000000429 INF: FPGA: Recv ZSGSRD 29409
17-03-17 21:34:47.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.418 -07 000000431 INF: FPGA: Recv ZSGSRD 29405
17-03-17 21:34:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.428 -07 000000458 INF: FPGA: Recv ZSGSRD 29406
17-03-17 21:34:47.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.438 -07 000000431 INF: FPGA: Recv ZSGSRD 29411
17-03-17 21:34:47.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29402
17-03-17 21:34:47.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:47.458 -07 000000382 INF: FPGA: Recv ZSGSRD 29403
17-03-17 21:34:47.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:47.468 -07 000000547 INF: FPGA: Recv ZPIEZORD 25152
17-03-17 21:34:47.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:47.478 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -9.3 V.
17-03-17 21:34:47.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29406 (-128.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29402 (-128.4 uncal um), Max = 29411 (-128.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:34:47.478 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 5, negNoise = 4
17-03-17 21:34:47.478 -07 000000610 INF: Z Motor: After move to -0.129229, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:47.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:34:47.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:47.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:47.478 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:47.478 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:47.478 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:47.478 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:47.478 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:47.478 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:47.478 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:47.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:47.478 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:47.478 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:47.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:34:47.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:47.488 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:34:47.488 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:47.488 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:34:47.488 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:34:47.498 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:34:47.498 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:34:47.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28406 150\n [Camera]
17-03-17 21:34:47.698 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:48.128 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:48.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:48.128 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:48.128 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:48.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) start.
17-03-17 21:34:48.138 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:48.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:48.138 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:48.138 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:48.138 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:34:48.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28406 819
17-03-17 21:34:48.418 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.978563,
17-03-17 21:34:48.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:48.518 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2233535248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:34:48.518 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:34:48.518 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:48.628 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 488 ms.
17-03-17 21:34:48.628 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 488 ms.
17-03-17 21:34:48.628 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:48.628 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 112 ms.
17-03-17 21:34:48.628 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 21:34:48.628 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:34:48.638 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 21:34:48.678 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:48.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:48.688 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:48.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:48.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:48.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:48.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:48.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:34:48.698 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:48.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:34:48.878 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:48.878 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:48.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28406 150' command took 2 ms to send, 1372 ms to get response, and 1378 ms overall
17-03-17 21:34:48.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:48.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129233734251758. ------
17-03-17 21:34:48.878 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:48.878 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13552 mm
17-03-17 21:34:48.878 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:48.888 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:48.888 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:34:48.888 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:48.888 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29605, sync = True, waitForSettling = False)
17-03-17 21:34:48.888 -07 000000429 INF: Z Motor: Moving to -0.135523 mm, started at -0.129234 mm, distance = -6.29 um
17-03-17 21:34:48.888 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:34:48.888 -07 000000480 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 21:34:48.898 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:48.898 -07 000000438 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:34:48.908 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:34:48.908 -07 000000429 INF: FPGA: Xmit ZDACW 29605\n [Z Motor]
17-03-17 21:34:48.908 -07 000000480 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:48.908 -07 000000480 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:48.908 -07 000000480 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:34:48.908 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:34:48.918 -07 000000429 INF: FPGA: 'ZDACW 29605' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:34:48.918 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:48.918 -07 000000626 INF: FPGA: Recv ZDACR 29605
17-03-17 21:34:48.928 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:48.928 -07 000000429 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:34:48.928 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:49.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:34:49.078 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:34:49.078 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:49.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:34:49.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:34:49.078 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:49.078 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:49.078 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:49.078 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:34:49.088 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:34:49.088 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:49.088 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:34:49.298 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:34:49.298 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 21:34:49.338 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:49.348 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:34:49.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:34:49.348 -07 000000480 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:49.348 -07 000000480 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:34:49.348 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 21:34:50.298 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:50.298 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:34:50.308 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:50.308 -07 000000480 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:50.328 -07 000000480 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:50.328 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:50.328 -07 000000480 INF: Y Motor: Moved to 72.3496 after 1440 ms (table move)
17-03-17 21:34:50.328 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135523 mm (DAC = 29605)
17-03-17 21:34:50.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.338 -07 000000012 INF: FPGA: Recv ZSGSRD 30392
17-03-17 21:34:50.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:50.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.338 -07 000000480 INF: FPGA: Recv ZSGSRD 30386
17-03-17 21:34:50.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.348 -07 000000382 INF: FPGA: Recv ZSGSRD 30381
17-03-17 21:34:50.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.358 -07 000000476 INF: FPGA: Recv ZSGSRD 30386
17-03-17 21:34:50.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.368 -07 000000459 INF: FPGA: Recv ZSGSRD 30385
17-03-17 21:34:50.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.378 -07 000000626 INF: FPGA: Recv ZSGSRD 30385
17-03-17 21:34:50.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.388 -07 000000475 INF: FPGA: Recv ZSGSRD 30386
17-03-17 21:34:50.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.398 -07 000000382 INF: FPGA: Recv ZSGSRD 30384
17-03-17 21:34:50.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.408 -07 000000476 INF: FPGA: Recv ZSGSRD 30380
17-03-17 21:34:50.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:50.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30386
17-03-17 21:34:50.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.428 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:50.428 -07 000000415 INF: FPGA: Recv ZPIEZORD 26423
17-03-17 21:34:50.438 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:50.438 -07 000000512 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -8.7 V.
17-03-17 21:34:50.438 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30385 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30386 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30380 (-134.7 uncal um), Max = 30392 (-134.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:50.438 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30385, posNoise = 7, negNoise = 5
17-03-17 21:34:50.438 -07 000000512 INF: Z Motor: After move to -0.135523, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:50.438 -07 000000512 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:34:50.438 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:50.488 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:34:50.488 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:50.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:50.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:50.488 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:50.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:50.488 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:50.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:50.488 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:50.488 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:50.498 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:50.498 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:50.498 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:34:50.498 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:34:50.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:50.548 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:34:50.748 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:34:50.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:34:50.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:50.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 21:34:50.788 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:50.788 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:50.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:34:50.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:34:50.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:50.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:50.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:34:50.888 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:50.888 -07 000000458 INF: Autofocus start
17-03-17 21:34:50.888 -07 000000458 INF: MeasureProfile start
17-03-17 21:34:50.888 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:50.898 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:50.898 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:50.898 -07 000000458 INF: MeasureProfile done
17-03-17 21:34:50.898 -07 000000458 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:34:50.898 -07 000000458 INF: Autofocus finished
17-03-17 21:34:51.098 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:51.098 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:51.098 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135523037938542. ----------
17-03-17 21:34:51.098 -07 000000610 INF: Cycle	52	Tile	16	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:51.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28112, sync = True, waitForSettling = True)
17-03-17 21:34:51.108 -07 000000610 INF: Z Motor: Moving to -0.128688 mm, started at -0.135523 mm, distance = 6.83 um
17-03-17 21:34:51.108 -07 000000610 INF: FPGA: Xmit ZDACW 28112\n [Z Motor]
17-03-17 21:34:51.108 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:34:51.118 -07 000000610 INF: FPGA: 'ZDACW 28112' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:34:51.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:51.118 -07 000000012 INF: FPGA: Recv ZDACR 28112
17-03-17 21:34:51.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:51.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29325
17-03-17 21:34:51.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:51.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.288 -07 000000627 INF: FPGA: Recv ZSGSRD 29323
17-03-17 21:34:51.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.298 -07 000000476 INF: FPGA: Recv ZSGSRD 29321
17-03-17 21:34:51.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29322
17-03-17 21:34:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.318 -07 000000424 INF: FPGA: Recv ZSGSRD 29322
17-03-17 21:34:51.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29324
17-03-17 21:34:51.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.338 -07 000000458 INF: FPGA: Recv ZSGSRD 29320
17-03-17 21:34:51.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.348 -07 000000459 INF: FPGA: Recv ZSGSRD 29323
17-03-17 21:34:51.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.358 -07 000000415 INF: FPGA: Recv ZSGSRD 29328
17-03-17 21:34:51.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:51.368 -07 000000424 INF: FPGA: Recv ZSGSRD 29327
17-03-17 21:34:51.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:51.378 -07 000000576 INF: FPGA: Recv ZPIEZORD 25021
17-03-17 21:34:51.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:51.388 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.4 V.
17-03-17 21:34:51.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29324 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29323 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29320 (-127.9 uncal um), Max = 29328 (-128.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:34:51.388 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29324, posNoise = 4, negNoise = 4
17-03-17 21:34:51.388 -07 000000610 INF: Z Motor: After move to -0.128688, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:51.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:34:51.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:51.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:51.388 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:51.388 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:51.388 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:51.388 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:51.388 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:51.388 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:34:51.388 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:51.388 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:51.388 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:34:51.388 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:51.398 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:51.398 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:51.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:34:51.398 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:51.408 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:34:51.408 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:34:51.408 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:34:51.408 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:34:51.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28289 150\n [Camera]
17-03-17 21:34:51.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:51.888 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:51.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:52.038 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:52.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:52.048 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:52.048 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:52.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:34:52.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:52.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:52.048 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:52.048 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:52.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:34:52.238 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28289 819
17-03-17 21:34:52.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:52.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:34:52.438 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:34:52.438 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:52.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:34:52.438 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:34:52.438 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:52.448 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:52.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:34:52.448 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:52.458 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:34:52.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:52.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:52.598 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:52.598 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:52.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:52.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:52.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:34:52.598 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:52.598 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:52.598 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:34:52.788 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1371
17-03-17 21:34:52.788 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:52.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28289 150' command took 2 ms to send, 1373 ms to get response, and 1378 ms overall
17-03-17 21:34:52.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:52.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128706948856133. ------
17-03-17 21:34:52.788 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:52.788 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13528 mm
17-03-17 21:34:52.788 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:52.798 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:34:52.798 -07 000000429 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:34:52.798 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:52.798 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29553, sync = True, waitForSettling = False)
17-03-17 21:34:52.798 -07 000000569 INF: Z Motor: Moving to -0.135285 mm, started at -0.128707 mm, distance = -6.58 um
17-03-17 21:34:52.798 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:52.798 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:34:52.798 -07 000000626 INF: FPGA: Recv YRDPOS 148173
17-03-17 21:34:52.808 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:52.808 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:52.808 -07 000000429 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:52.808 -07 000000429 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:52.808 -07 000000429 INF: Y Motor: Moving 1348 steps-27
17-03-17 21:34:52.818 -07 000000569 INF: FPGA: Xmit ZDACW 29553\n [Z Motor]
17-03-17 21:34:52.818 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:34:52.828 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:52.828 -07 000000569 INF: FPGA: 'ZDACW 29553' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:34:52.838 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:52.838 -07 000000501 INF: FPGA: Recv ZDACR 29553
17-03-17 21:34:52.848 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:52.848 -07 000000569 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:34:52.988 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:34:52.988 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:34:52.988 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:52.988 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:52.998 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:34:52.998 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:34:52.998 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:52.998 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:52.998 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:34:52.998 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:34:53.008 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:53.008 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 21:34:53.198 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:34:53.208 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-17 21:34:53.238 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:53.248 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:34:53.248 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:34:53.248 -07 000000429 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:53.248 -07 000000429 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:34:53.248 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 21:34:53.788 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 4.003063,
17-03-17 21:34:54.198 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:54.198 -07 000000431 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:34:54.208 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:54.208 -07 000000429 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:54.228 -07 000000429 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:54.228 -07 000000429 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:34:54.228 -07 000000429 INF: Y Motor: Moved to 73.1763 after 1435 ms (table move)
17-03-17 21:34:54.228 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135285 mm (DAC = 29553)
17-03-17 21:34:54.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.238 -07 000000512 INF: FPGA: Recv ZSGSRD 30348
17-03-17 21:34:54.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:54.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.248 -07 000000429 INF: FPGA: Recv ZSGSRD 30351
17-03-17 21:34:54.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.258 -07 000000459 INF: FPGA: Recv ZSGSRD 30348
17-03-17 21:34:54.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30355
17-03-17 21:34:54.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30353
17-03-17 21:34:54.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.288 -07 000000424 INF: FPGA: Recv ZSGSRD 30345
17-03-17 21:34:54.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30353
17-03-17 21:34:54.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.308 -07 000000429 INF: FPGA: Recv ZSGSRD 30348
17-03-17 21:34:54.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.318 -07 000000501 INF: FPGA: Recv ZSGSRD 30341
17-03-17 21:34:54.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:54.328 -07 000000476 INF: FPGA: Recv ZSGSRD 30343
17-03-17 21:34:54.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.338 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:54.338 -07 000000569 INF: FPGA: Recv ZPIEZORD 26397
17-03-17 21:34:54.348 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:54.348 -07 000000012 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -8.7 V.
17-03-17 21:34:54.348 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30348 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30348 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30341 (-134.4 uncal um), Max = 30355 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:34:54.348 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30348, posNoise = 7, negNoise = 7
17-03-17 21:34:54.348 -07 000000012 INF: Z Motor: After move to -0.135285, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:54.348 -07 000000012 INF: Z Motor: Settle wait time = 1435 ms, measure time = 111 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:34:54.348 -07 000000012 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:54.388 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:34:54.388 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:54.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:54.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:54.388 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:54.388 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:54.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:54.388 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:54.388 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:54.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:54.398 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:54.398 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:54.398 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:34:54.398 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:34:54.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:54.448 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:34:54.648 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:34:54.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:34:54.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:54.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 21:34:54.688 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:54.688 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:54.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:34:54.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:34:54.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:54.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:34:54.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:34:54.788 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:54.788 -07 000000475 INF: Autofocus start
17-03-17 21:34:54.788 -07 000000475 INF: MeasureProfile start
17-03-17 21:34:54.788 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:54.798 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:54.798 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:54.798 -07 000000475 INF: MeasureProfile done
17-03-17 21:34:54.798 -07 000000475 INF: X=23  Z correction [um]=0.08669062
17-03-17 21:34:54.798 -07 000000475 INF: Autofocus finished
17-03-17 21:34:54.998 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:54.998 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:54.998 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135285342089297. ----------
17-03-17 21:34:54.998 -07 000000610 INF: Cycle	52	Tile	17	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:55.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28084, sync = True, waitForSettling = True)
17-03-17 21:34:55.008 -07 000000610 INF: Z Motor: Moving to -0.128560 mm, started at -0.135285 mm, distance = 6.73 um
17-03-17 21:34:55.008 -07 000000610 INF: FPGA: Xmit ZDACW 28084\n [Z Motor]
17-03-17 21:34:55.008 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:34:55.018 -07 000000610 INF: FPGA: 'ZDACW 28084' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:55.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:55.018 -07 000000480 INF: FPGA: Recv ZDACR 28084
17-03-17 21:34:55.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:55.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29303
17-03-17 21:34:55.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:55.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.188 -07 000000458 INF: FPGA: Recv ZSGSRD 29313
17-03-17 21:34:55.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.198 -07 000000012 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:34:55.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.208 -07 000000627 INF: FPGA: Recv ZSGSRD 29299
17-03-17 21:34:55.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29303
17-03-17 21:34:55.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.228 -07 000000569 INF: FPGA: Recv ZSGSRD 29304
17-03-17 21:34:55.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.238 -07 000000475 INF: FPGA: Recv ZSGSRD 29309
17-03-17 21:34:55.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29295
17-03-17 21:34:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.258 -07 000000512 INF: FPGA: Recv ZSGSRD 29304
17-03-17 21:34:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:55.268 -07 000000424 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:34:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:55.278 -07 000000438 INF: FPGA: Recv ZPIEZORD 24989
17-03-17 21:34:55.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:55.288 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 21:34:55.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29304 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29295 (-127.7 uncal um), Max = 29313 (-127.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:34:55.288 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29304, posNoise = 9, negNoise = 9
17-03-17 21:34:55.288 -07 000000610 INF: Z Motor: After move to -0.128560, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:55.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:34:55.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:55.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:55.288 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:55.288 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:55.288 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:55.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:55.288 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:55.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:55.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:55.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:55.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:55.288 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:55.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:55.298 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:55.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:34:55.298 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:55.308 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:34:55.308 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:34:55.308 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:34:55.308 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:34:55.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28261 150\n [Camera]
17-03-17 21:34:55.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:55.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:55.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:55.948 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:55.948 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:55.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:34:55.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:55.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:55.948 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:55.948 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:55.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:34:56.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28261 819
17-03-17 21:34:56.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:34:56.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:34:56.338 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:34:56.338 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:56.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:34:56.338 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:34:56.338 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:56.348 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:56.348 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:34:56.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:34:56.348 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:34:56.498 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:34:56.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:34:56.498 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:56.498 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:56.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:34:56.498 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:34:56.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:34:56.498 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:56.498 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:56.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:34:56.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:34:56.688 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:34:56.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28261 150' command took 2 ms to send, 1366 ms to get response, and 1377 ms overall
17-03-17 21:34:56.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:34:56.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128578464613298. ------
17-03-17 21:34:56.698 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13486 mm
17-03-17 21:34:56.698 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:34:56.698 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:56.698 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:34:56.698 -07 000000431 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:34:56.698 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29461, sync = True, waitForSettling = False)
17-03-17 21:34:56.698 -07 000000547 INF: Z Motor: Moving to -0.134864 mm, started at -0.128578 mm, distance = -6.29 um
17-03-17 21:34:56.708 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:56.708 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:56.708 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 21:34:56.708 -07 000000475 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:34:56.718 -07 000000547 INF: FPGA: Xmit ZDACW 29461\n [Z Motor]
17-03-17 21:34:56.718 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:34:56.718 -07 000000431 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:56.718 -07 000000431 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:34:56.718 -07 000000431 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:34:56.718 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:34:56.728 -07 000000547 INF: FPGA: 'ZDACW 29461' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:34:56.728 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:34:56.738 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:34:56.748 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:56.748 -07 000000458 INF: FPGA: Recv ZDACR 29461
17-03-17 21:34:56.758 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:34:56.758 -07 000000547 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:34:56.888 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:34:56.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:34:56.898 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:34:56.898 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:34:56.898 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:56.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:34:56.908 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:34:56.908 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:56.908 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:34:56.908 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:34:56.908 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:34:56.918 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:34:56.928 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:34:56.928 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:34:57.108 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:34:57.108 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:34:57.138 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:57.148 -07 000000458 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:34:57.148 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:34:57.148 -07 000000431 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:57.148 -07 000000431 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:34:57.148 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 21:34:58.098 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:34:58.098 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:34:58.108 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:58.108 -07 000000431 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:34:58.118 -07 000000431 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:34:58.118 -07 000000431 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:34:58.118 -07 000000431 INF: Y Motor: Moved to 74.0083 after 1421 ms (table move)
17-03-17 21:34:58.128 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134864 mm (DAC = 29461)
17-03-17 21:34:58.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30282
17-03-17 21:34:58.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:34:58.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.138 -07 000000512 INF: FPGA: Recv ZSGSRD 30283
17-03-17 21:34:58.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.148 -07 000000480 INF: FPGA: Recv ZSGSRD 30281
17-03-17 21:34:58.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30283
17-03-17 21:34:58.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30288
17-03-17 21:34:58.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.178 -07 000000459 INF: FPGA: Recv ZSGSRD 30285
17-03-17 21:34:58.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.188 -07 000000576 INF: FPGA: Recv ZSGSRD 30288
17-03-17 21:34:58.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30279
17-03-17 21:34:58.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.208 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.208 -07 000000458 INF: FPGA: Recv ZSGSRD 30281
17-03-17 21:34:58.218 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.218 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:58.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30286
17-03-17 21:34:58.228 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.228 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:58.228 -07 000000424 INF: FPGA: Recv ZPIEZORD 26323
17-03-17 21:34:58.238 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.238 -07 000000569 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -8.7 V.
17-03-17 21:34:58.238 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30284 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30283 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30279 (-134.1 uncal um), Max = 30288 (-134.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:34:58.238 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30284, posNoise = 4, negNoise = 5
17-03-17 21:34:58.238 -07 000000569 INF: Z Motor: After move to -0.134864, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:58.238 -07 000000569 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 21:34:58.238 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:34:58.288 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 21:34:58.288 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:34:58.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:58.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:58.288 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:58.288 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:58.288 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:34:58.288 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:58.298 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:34:58.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:34:58.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:58.298 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:34:58.308 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:34:58.308 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:34:58.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:34:58.348 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:34:58.548 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:34:58.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:34:58.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:34:58.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:34:58.588 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:34:58.588 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:34:58.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:34:58.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:34:58.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:34:58.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:34:58.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:34:58.688 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:34:58.688 -07 000000626 INF: Autofocus start
17-03-17 21:34:58.688 -07 000000626 INF: MeasureProfile start
17-03-17 21:34:58.688 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:34:58.698 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:34:58.698 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:34:58.708 -07 000000626 INF: MeasureProfile done
17-03-17 21:34:58.708 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:34:58.708 -07 000000626 INF: Autofocus finished
17-03-17 21:34:58.898 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:34:58.898 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:34:58.898 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134874192512224. ----------
17-03-17 21:34:58.908 -07 000000610 INF: Cycle	52	Tile	18	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:34:58.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27968, sync = True, waitForSettling = True)
17-03-17 21:34:58.908 -07 000000610 INF: Z Motor: Moving to -0.128029 mm, started at -0.134874 mm, distance = 6.84 um
17-03-17 21:34:58.908 -07 000000610 INF: FPGA: Xmit ZDACW 27968\n [Z Motor]
17-03-17 21:34:58.908 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:34:58.918 -07 000000610 INF: FPGA: 'ZDACW 27968' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:34:58.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:34:58.918 -07 000000424 INF: FPGA: Recv ZDACR 27968
17-03-17 21:34:58.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:58.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:34:59.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29219
17-03-17 21:34:59.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:34:59.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.088 -07 000000415 INF: FPGA: Recv ZSGSRD 29220
17-03-17 21:34:59.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29221
17-03-17 21:34:59.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.108 -07 000000429 INF: FPGA: Recv ZSGSRD 29220
17-03-17 21:34:59.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.118 -07 000000431 INF: FPGA: Recv ZSGSRD 29217
17-03-17 21:34:59.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29218
17-03-17 21:34:59.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.138 -07 000000012 INF: FPGA: Recv ZSGSRD 29213
17-03-17 21:34:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.158 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471,
17-03-17 21:34:59.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29221
17-03-17 21:34:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29215
17-03-17 21:34:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:34:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:34:59.198 -07 000000458 INF: FPGA: Recv ZSGSRD 29226
17-03-17 21:34:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:34:59.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:34:59.218 -07 000000431 INF: FPGA: Recv ZPIEZORD 24938
17-03-17 21:34:59.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:34:59.228 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.4 V.
17-03-17 21:34:59.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29219 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29220 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29213 (-127.2 uncal um), Max = 29226 (-127.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:34:59.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29219, posNoise = 7, negNoise = 6
17-03-17 21:34:59.228 -07 000000610 INF: Z Motor: After move to -0.128029, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:34:59.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 321 ms)
17-03-17 21:34:59.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:34:59.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:34:59.228 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:34:59.228 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:34:59.228 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:34:59.228 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:34:59.228 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:34:59.228 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:34:59.228 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:34:59.228 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:34:59.228 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:34:59.228 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:34:59.238 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:34:59.238 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:34:59.238 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:34:59.238 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:34:59.238 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:34:59.238 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:34:59.248 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:34:59.248 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:34:59.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28145 150\n [Camera]
17-03-17 21:34:59.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:34:59.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:34:59.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:34:59.878 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:34:59.878 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:34:59.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:34:59.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:34:59.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:34:59.888 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:34:59.888 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:34:59.888 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:35:00.078 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28145 819
17-03-17 21:35:00.218 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:35:00.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:35:00.268 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:35:00.268 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:00.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:35:00.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:35:00.268 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:00.268 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:35:00.268 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:35:00.268 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:35:00.278 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:35:00.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:35:00.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:35:00.438 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:35:00.438 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:35:00.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:35:00.438 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:35:00.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:35:00.438 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:35:00.438 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:35:00.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:35:00.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1370
17-03-17 21:35:00.628 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:35:00.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28145 150' command took 2 ms to send, 1371 ms to get response, and 1377 ms overall
17-03-17 21:35:00.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:35:00.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128032406581248. ------
17-03-17 21:35:00.628 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:35:00.628 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13446 mm
17-03-17 21:35:00.628 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:35:00.638 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:35:00.638 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:35:00.638 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:35:00.638 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:35:00.638 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:35:00.638 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29373, sync = True, waitForSettling = False)
17-03-17 21:35:00.638 -07 000000480 INF: Z Motor: Moving to -0.134461 mm, started at -0.128032 mm, distance = -6.43 um
17-03-17 21:35:00.638 -07 000000459 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:35:00.648 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:35:00.648 -07 000000382 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:35:00.648 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:35:00.648 -07 000000382 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:35:00.648 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:35:00.658 -07 000000480 INF: FPGA: Xmit ZDACW 29373\n [Z Motor]
17-03-17 21:35:00.658 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:35:00.668 -07 000000480 INF: FPGA: 'ZDACW 29373' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:35:00.668 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:35:00.678 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:35:00.678 -07 000000608 INF: FPGA: Recv ZDACR 29373
17-03-17 21:35:00.688 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:35:00.688 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:35:00.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:35:00.838 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:35:00.838 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:00.838 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:35:00.838 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:35:00.838 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:00.848 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:35:00.848 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:35:00.848 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 21:35:00.848 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:35:00.848 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:35:00.858 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 21:35:01.038 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:35:01.038 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:35:01.068 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:35:01.068 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:35:01.078 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:35:01.078 -07 000000382 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:35:01.078 -07 000000382 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:35:01.078 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 21:35:01.888 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:35:01.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 51. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=785, R2=806, Total=1591. Warn if over 250 bubbles per interval.
17-03-17 21:35:02.028 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:35:02.028 -07 000000475 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:35:02.038 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:35:02.038 -07 000000382 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:35:02.048 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:35:02.048 -07 000000382 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:35:02.048 -07 000000382 INF: Y Motor: Moved to 74.8325 after 1415 ms (table move)
17-03-17 21:35:02.048 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134461 mm (DAC = 29373)
17-03-17 21:35:02.058 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.058 -07 000000415 INF: FPGA: Recv ZSGSRD 30227
17-03-17 21:35:02.068 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:35:02.068 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.068 -07 000000576 INF: FPGA: Recv ZSGSRD 30216
17-03-17 21:35:02.078 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.078 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30211
17-03-17 21:35:02.088 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.088 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.088 -07 000000429 INF: FPGA: Recv ZSGSRD 30218
17-03-17 21:35:02.098 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.098 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.098 -07 000000480 INF: FPGA: Recv ZSGSRD 30220
17-03-17 21:35:02.108 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.108 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.108 -07 000000382 INF: FPGA: Recv ZSGSRD 30223
17-03-17 21:35:02.118 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.118 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.118 -07 000000626 INF: FPGA: Recv ZSGSRD 30224
17-03-17 21:35:02.128 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.128 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30217
17-03-17 21:35:02.138 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.138 -07 000000569 INF: FPGA: Recv ZSGSRD 30223
17-03-17 21:35:02.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30215
17-03-17 21:35:02.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.158 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:35:02.158 -07 000000382 INF: FPGA: Recv ZPIEZORD 26241
17-03-17 21:35:02.168 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.168 -07 000000476 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.482 V. Piezo Error = -8.8 V.
17-03-17 21:35:02.168 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30219 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30219 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30211 (-133.6 uncal um), Max = 30227 (-133.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:35:02.168 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30219, posNoise = 8, negNoise = 8
17-03-17 21:35:02.168 -07 000000476 INF: Z Motor: After move to -0.134461, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:35:02.168 -07 000000476 INF: Z Motor: Settle wait time = 1417 ms, measure time = 111 ms (allowed 150 ms), total time = 1528 ms
17-03-17 21:35:02.168 -07 000000476 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:35:02.208 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 21:35:02.208 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:35:02.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:35:02.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:35:02.208 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:35:02.208 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:35:02.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:35:02.208 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:35:02.208 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:35:02.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:35:02.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:35:02.218 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:35:02.218 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:35:02.218 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:35:02.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:35:02.268 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:35:02.468 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:35:02.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:35:02.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:35:02.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-17 21:35:02.508 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:35:02.508 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:35:02.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:35:02.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:35:02.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:02.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:35:02.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:35:02.608 -07 000000480 INF: Autofocus start
17-03-17 21:35:02.608 -07 000000480 INF: MeasureProfile start
17-03-17 21:35:02.608 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:35:02.608 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:35:02.618 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:35:02.618 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:35:02.618 -07 000000480 INF: MeasureProfile done
17-03-17 21:35:02.618 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:35:02.618 -07 000000480 INF: Autofocus finished
17-03-17 21:35:02.818 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:35:02.818 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:35:02.818 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134456618723009. ----------
17-03-17 21:35:02.818 -07 000000610 INF: Cycle	52	Tile	19	Exposure Settings		A	434	G	209	T	209	C	434
17-03-17 21:35:02.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27881, sync = True, waitForSettling = True)
17-03-17 21:35:02.828 -07 000000610 INF: Z Motor: Moving to -0.127631 mm, started at -0.134457 mm, distance = 6.83 um
17-03-17 21:35:02.828 -07 000000610 INF: FPGA: Xmit ZDACW 27881\n [Z Motor]
17-03-17 21:35:02.828 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:35:02.838 -07 000000610 INF: FPGA: 'ZDACW 27881' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:35:02.838 -07 000000627 INF: FPGA: Recv ZDACR 27881
17-03-17 21:35:02.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:02.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:35:02.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:02.998 -07 000000424 INF: FPGA: Recv ZSGSRD 29160
17-03-17 21:35:03.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:35:03.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.008 -07 000000627 INF: FPGA: Recv ZSGSRD 29155
17-03-17 21:35:03.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29157
17-03-17 21:35:03.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.028 -07 000000569 INF: FPGA: Recv ZSGSRD 29156
17-03-17 21:35:03.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.038 -07 000000459 INF: FPGA: Recv ZSGSRD 29164
17-03-17 21:35:03.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29157
17-03-17 21:35:03.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.058 -07 000000576 INF: FPGA: Recv ZSGSRD 29153
17-03-17 21:35:03.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.068 -07 000000012 INF: FPGA: Recv ZSGSRD 29163
17-03-17 21:35:03.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29156
17-03-17 21:35:03.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:35:03.088 -07 000000429 INF: FPGA: Recv ZSGSRD 29159
17-03-17 21:35:03.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:35:03.098 -07 000000012 INF: FPGA: Recv ZPIEZORD 24843
17-03-17 21:35:03.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:35:03.108 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.254 V. Piezo Error = -9.5 V.
17-03-17 21:35:03.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29158 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29157 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29153 (-126.8 uncal um), Max = 29164 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:35:03.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29158, posNoise = 6, negNoise = 5
17-03-17 21:35:03.108 -07 000000610 INF: Z Motor: After move to -0.127631, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:35:03.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:35:03.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:35:03.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:35:03.108 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:35:03.108 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:35:03.108 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:35:03.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:35:03.108 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:35:03.108 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:35:03.108 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:35:03.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:35:03.108 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:35:03.108 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:35:03.108 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:35:03.108 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:35:03.108 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:35:03.118 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:35:03.118 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:35:03.118 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:35:03.118 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:35:03.118 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:35:03.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 434 434 209 209 28058 150\n [Camera]
17-03-17 21:35:03.328 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:35:03.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 626
17-03-17 21:35:03.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 626
17-03-17 21:35:03.758 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:35:03.758 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:35:03.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:35:03.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 626
17-03-17 21:35:03.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 626
17-03-17 21:35:03.768 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:35:03.768 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:35:03.768 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:35:03.958 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28058 819
17-03-17 21:35:04.108 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 969
17-03-17 21:35:04.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:35:04.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:35:04.148 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:04.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:35:04.148 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:35:04.148 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:04.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:35:04.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:35:04.158 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:35:04.158 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:35:04.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1178
17-03-17 21:35:04.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1178
17-03-17 21:35:04.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:35:04.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1178
17-03-17 21:35:04.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1178
17-03-17 21:35:04.448 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:35:04.448 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:35:04.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:35:04.448 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:35:04.448 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:35:04.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1374
17-03-17 21:35:04.508 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:35:04.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 434 434 209 209 28058 150' command took 2 ms to send, 1375 ms to get response, and 1381 ms overall
17-03-17 21:35:04.568 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471,
17-03-17 21:35:04.848 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:35:04.848 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:35:04.848 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:04.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:35:04.848 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:35:04.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:35:04.848 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:35:04.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:35:04.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 538 ms.
17-03-17 21:35:04.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:35:04.858 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:35:04.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:35:04.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:35:04.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:35:04.948 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 21:35:04.948 -07 000000610 INF: Imaging Cycle 52: ScanTilesCommand Cycle 52 time end. Duration was 159146 ms.
17-03-17 21:35:04.948 -07 000000610 INF: =================== Cycle #52 ===================
17-03-17 21:35:04.948 -07 000000610 INF: ===================  ===================
17-03-17 21:35:04.948 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:35:04.958 -07 000000627 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 21:35:04.958 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:35:04.958 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 21:35:04.958 -07 000000459 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 52, FrontChillerTemperature: 3.989471, FrontChillerHeatSinkTemperature: 0.482176, AmbientTemperature: 18.9783, FlowCellCompartmentTemperature: 22.00417, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.72086, GreenLEDSensorTemperature: 26.50723, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-17 21:35:04.998 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.