17-03-17 21:44:07.678 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:07.678 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:44:07.678 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 21:44:07.678 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:44:07.688 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:44:07.688 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:44:07.688 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:44:07.688 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:44:07.688 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:44:07.688 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:44:07.808 -07 000000458 INF: FPGA: Recv YMVTO 154377 871
17-03-17 21:44:07.808 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 116 ms overall
17-03-17 21:44:07.808 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 21:44:07.808 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 21:44:07.808 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.729 mm/sec
17-03-17 21:44:10.808 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:44:10.808 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:44:10.818 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:44:10.818 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:44:10.828 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:44:10.828 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:44:10.828 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3150 ms
17-03-17 21:44:10.838 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 60° ===================
17-03-17 21:44:10.838 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:44:10.838 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:44:10.838 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:44:10.848 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:44:10.848 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:44:10.848 -07 000000476 INF: FPGA: Recv TEC2EN 
17-03-17 21:44:10.858 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:44:10.858 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 60° ===================
17-03-17 21:44:10.858 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:10.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:44:10.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:10.888 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:44:10.888 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:44:10.888 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:44:11.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:44:11.208 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:44:11.208 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:44:11.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:11.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:44:11.278 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:44:11.378 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:11.378 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:44:11.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:11.408 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:44:11.408 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:44:11.408 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:44:11.538 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:44:11.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:11.908 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:44:11.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=805, R2=832, Total=1637. Warn if over 250 bubbles per interval.
17-03-17 21:44:12.448 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.993549,
17-03-17 21:44:14.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:14.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:15.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:15.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:15.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:15.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:15.638 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:44:15.638 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:15.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:15.798 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:44:15.798 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:44:15.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:15.958 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:44:15.958 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:44:15.958 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:44:16.088 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:44:16.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:16.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:16.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:16.578 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:44:16.578 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:16.908 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 21:44:16.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=807, R2=834, Total=1641. Warn if over 250 bubbles per interval.
17-03-17 21:44:17.798 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:44:17.798 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:44:17.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:17.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:44:17.818 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:44:17.818 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:44:17.828 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.02213,
17-03-17 21:44:17.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:44:17.968 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:44:17.968 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:44:18.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:18.038 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:44:18.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:44:18.138 -07 000000610 INF: =================== Cycle #55, Pumping Reagent CMS (4) ===================
17-03-17 21:44:18.138 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:44:18.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:18.168 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:44:18.168 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:44:18.168 -07 000000610 INF: =================== Cycle #55, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:44:18.298 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:44:18.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:19.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:19.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:20.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:20.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:20.258 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:44:20.258 -07 000000610 INF: =================== Cycle #55, Pumping Reagent CMS (4) ===================
17-03-17 21:44:20.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:20.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:44:20.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:44:20.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:20.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:44:20.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:44:20.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:44:20.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:44:20.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:21.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:21.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:21.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:44:21.198 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:21.908 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 21:44:21.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=810, R2=834, Total=1644. Warn if over 250 bubbles per interval.
17-03-17 21:44:22.418 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:44:22.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:44:22.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:22.438 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:44:22.438 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:44:22.438 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:44:22.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:44:22.608 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:44:22.608 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:44:22.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:22.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:44:22.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:44:22.778 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:22.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:44:22.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:22.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:44:22.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:44:22.818 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:44:22.948 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:44:22.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:23.188 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.004458,
17-03-17 21:44:23.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:23.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:23.888 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:44:23.888 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:24.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:24.048 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:44:24.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:44:24.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:24.208 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:44:24.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:44:24.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:44:24.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:44:24.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:24.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:24.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:24.828 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:44:24.828 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:24.828 -07 000000438 INF: WaitCommand(10000) start
17-03-17 21:44:24.828 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:44:24.828 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:44:26.048 -07 000000547 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:44:26.048 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 21:44:26.078 -07 000000547 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:44:26.078 -07 000000547 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:44:26.208 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:44:26.248 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:26.908 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 2
17-03-17 21:44:26.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=2, R2=6, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=812, R2=840, Total=1652. Warn if over 250 bubbles per interval.
17-03-17 21:44:27.778 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:27.808 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:28.228 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:28.258 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:28.258 -07 000000547 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:44:28.258 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:44:28.258 -07 000000547 INF: ===================  ===================
17-03-17 21:44:28.558 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.96762,
17-03-17 21:44:31.908 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:44:31.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=812, R2=840, Total=1652. Warn if over 250 bubbles per interval.
17-03-17 21:44:33.928 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.964938,
17-03-17 21:44:34.838 -07 000000438 INF: WaitCommand(10000) end
17-03-17 21:44:34.838 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:34.838 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:44:34.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:34.868 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:44:34.868 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:44:34.868 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:44:34.998 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:44:35.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:36.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 21:44:36.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=814, R2=841, Total=1655. Warn if over 250 bubbles per interval.
17-03-17 21:44:39.308 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.999021,
17-03-17 21:44:41.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:41.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:41.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:41.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:41.908 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 11
17-03-17 21:44:41.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=11, R2=8, Total=19. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=825, R2=849, Total=1674. Warn if over 250 bubbles per interval.
17-03-17 21:44:42.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:42.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:42.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:42.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:42.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:42.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:42.998 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:44:42.998 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:43.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:43.158 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:44:43.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:44:43.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:43.318 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:44:43.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:44:43.318 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:44:43.448 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:44:43.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:43.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:43.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:43.938 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:44:43.938 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:44.668 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.999021,
17-03-17 21:44:45.158 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:44:45.158 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:44:45.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:45.178 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:44:45.178 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:44:45.178 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:44:45.388 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:44:45.408 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:44:45.408 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:44:45.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:45.478 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:44:45.478 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:44:45.578 -07 000000610 INF: =================== Cycle #55, Pumping Reagent IMT (1) ===================
17-03-17 21:44:45.578 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:44:45.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:45.608 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:44:45.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:44:45.608 -07 000000610 INF: =================== Cycle #55, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:44:45.738 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:44:45.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:46.908 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 8
17-03-17 21:44:46.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=8, R2=7, Total=15. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=833, R2=856, Total=1689. Warn if over 250 bubbles per interval.
17-03-17 21:44:47.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:47.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:47.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:47.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:47.698 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:44:47.698 -07 000000610 INF: =================== Cycle #55, Pumping Reagent IMT (1) ===================
17-03-17 21:44:47.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:47.858 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:44:47.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:44:47.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:48.018 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:44:48.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:44:48.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:44:48.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:44:48.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:48.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:48.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:48.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:44:48.638 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:49.858 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:44:49.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:44:49.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:49.878 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:44:49.878 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:44:49.878 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:44:50.038 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.027603,
17-03-17 21:44:50.108 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:44:50.128 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:44:50.128 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:44:50.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:44:50.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:44:50.198 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:44:50.298 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:50.298 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:44:50.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:50.328 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:44:50.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:44:50.328 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:44:50.458 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:44:50.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:44:51.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:51.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:51.398 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:44:51.398 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:44:51.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:51.558 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:44:51.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:44:51.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:44:51.718 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:44:51.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:44:51.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:44:51.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:44:51.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:51.908 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 9 R1 7
17-03-17 21:44:51.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=7, R2=9, Total=16. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:44:52.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:44:52.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:44:52.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:44:52.338 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:52.338 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 65° ===================
17-03-17 21:44:52.338 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:44:52.338 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:44:52.338 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:44:52.348 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:44:52.348 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:44:52.348 -07 000000475 INF: FPGA: Recv TEC2EN 
17-03-17 21:44:52.358 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:44:52.358 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 65° ===================
17-03-17 21:44:52.358 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:44:52.358 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:44:55.408 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.994908,
17-03-17 21:44:56.908 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:44:56.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:00.778 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.005817,
17-03-17 21:45:01.908 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:01.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:06.148 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.015368,
17-03-17 21:45:06.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:06.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:11.518 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.989471,
17-03-17 21:45:11.908 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:11.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:16.888 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.001704,
17-03-17 21:45:16.908 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:16.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:21.908 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:21.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:22.258 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.993549,
17-03-17 21:45:22.368 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:45:22.368 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:45:22.368 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:45:22.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:45:22.498 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:45:22.498 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:45:22.498 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:45:22.628 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:45:22.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:45:23.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:23.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:23.238 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 21:45:23.238 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:45:23.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:45:23.398 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:45:23.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:45:23.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:45:23.558 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:45:23.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:45:23.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:45:23.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:45:23.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:24.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:24.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:24.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:45:24.178 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:45:24.178 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:45:24.178 -07 000000512 INF: WaitCommand(30000) start
17-03-17 21:45:24.178 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:45:25.398 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:45:25.398 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 21:45:25.428 -07 000000480 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:45:25.428 -07 000000480 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:45:25.558 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:45:25.598 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:45:26.908 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:26.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:27.628 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.052111,
17-03-17 21:45:27.938 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:27.968 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:45:28.388 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:28.418 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:28.418 -07 000000480 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:45:28.418 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:45:28.418 -07 000000480 INF: ===================  ===================
17-03-17 21:45:31.908 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:31.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:32.998 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.028963,
17-03-17 21:45:36.908 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:36.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:38.368 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.005817,
17-03-17 21:45:41.908 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:41.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:43.738 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.993549,
17-03-17 21:45:46.908 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:46.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:49.108 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.019446,
17-03-17 21:45:51.908 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:45:51.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=840, R2=865, Total=1705. Warn if over 250 bubbles per interval.
17-03-17 21:45:54.188 -07 000000512 INF: WaitCommand(30000) end
17-03-17 21:45:54.188 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 22° ===================
17-03-17 21:45:54.188 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:45:54.188 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:45:54.188 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:45:54.198 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:45:54.198 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:45:54.198 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-17 21:45:54.208 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:45:54.208 -07 000000610 INF: =================== Cycle #55, Flow Cell Temp 22° ===================
17-03-17 21:45:54.208 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:45:54.208 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:45:54.208 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:45:54.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:45:54.248 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:45:54.248 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:45:54.248 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:45:54.378 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:45:54.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:45:54.478 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.985358,
17-03-17 21:45:56.908 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 4
17-03-17 21:45:56.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=4, R2=2, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:45:57.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:57.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:45:57.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:58.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:45:58.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:58.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:58.478 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:45:58.478 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:45:58.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:45:58.638 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:45:58.638 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:45:58.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:45:58.798 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:45:58.798 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:45:58.798 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:45:58.928 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:45:58.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:59.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:45:59.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:45:59.418 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:45:59.418 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:45:59.848 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.981281,
17-03-17 21:46:00.638 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:46:00.638 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:46:00.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:46:00.658 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:46:00.658 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:46:00.658 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:46:00.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:46:00.828 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:46:00.828 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:46:00.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:46:00.898 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:46:00.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:46:00.998 -07 000000610 INF: =================== Cycle #55, Pumping Reagent USM (2) ===================
17-03-17 21:46:00.998 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:46:00.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:46:01.028 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:46:01.028 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:46:01.028 -07 000000610 INF: =================== Cycle #55, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:46:01.158 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:46:01.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:46:01.908 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:01.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:02.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:02.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:46:03.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:03.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:03.118 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 21:46:03.118 -07 000000610 INF: =================== Cycle #55, Pumping Reagent USM (2) ===================
17-03-17 21:46:03.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:46:03.278 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:46:03.278 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:46:03.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:46:03.438 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:46:03.438 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:46:03.438 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:46:03.568 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:46:03.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:04.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:04.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:04.058 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:46:04.058 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:46:05.228 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.978563,
17-03-17 21:46:05.278 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:46:05.278 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:46:05.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:46:05.298 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:46:05.298 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:46:05.298 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:46:05.448 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:46:05.468 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:46:05.468 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:46:05.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:46:05.538 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:46:05.538 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:46:05.638 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:46:05.638 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:46:05.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:46:05.668 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:46:05.668 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:46:05.668 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:46:05.798 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:46:05.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:46:06.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:06.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:06.738 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:46:06.738 -07 000000610 INF: =================== Cycle #55, Pumping Reagent PR2 (3) ===================
17-03-17 21:46:06.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:46:06.898 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:46:06.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:46:06.908 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:06.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:07.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:46:07.058 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:46:07.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:46:07.058 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:46:07.188 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:46:07.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:07.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:07.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:07.678 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:46:07.678 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:46:07.678 -07 000000547 INF: WaitCommand(10000) start
17-03-17 21:46:07.678 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:46:07.678 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:46:08.898 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:46:08.898 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-17 21:46:08.928 -07 000000576 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:46:08.928 -07 000000576 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:46:09.058 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:46:09.098 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:46:10.588 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.978563,
17-03-17 21:46:10.628 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:10.658 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:46:11.078 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-17 21:46:11.108 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:46:11.108 -07 000000576 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:46:11.108 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:46:11.108 -07 000000576 INF: ===================  ===================
17-03-17 21:46:11.908 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:11.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:15.958 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.007176,
17-03-17 21:46:16.908 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:16.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:17.688 -07 000000547 INF: WaitCommand(10000) end
17-03-17 21:46:17.688 -07 000000610 INF: =================== Cycle #55, Imaging ===================
17-03-17 21:46:17.688 -07 000000610 INF: Imaging Cycle 55: ScanTilesCommand Cycle 55 time start.
17-03-17 21:46:17.688 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:46:17.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:46:17.718 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:46:17.718 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:46:17.718 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:46:18.018 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:46:18.038 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:46:18.038 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:46:18.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:46:18.108 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:46:18.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:18.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:18.108 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:46:18.108 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:18.108 -07 000000569 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:46:18.118 -07 000000429 INF: FPGA: Recv EXLED1ON 
17-03-17 21:46:18.118 -07 000000569 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:18.118 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:46:18.118 -07 000000576 INF: FPGA: Recv EXLED1ADCR 23189
17-03-17 21:46:18.128 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:18.128 -07 000000569 INF: RedLED: Using Red data: Photodiode ADC 23189 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.1 mW
17-03-17 21:46:18.128 -07 000000569 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:46:18.128 -07 000000459 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:46:18.138 -07 000000569 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:18.138 -07 000000569 INF: RedLED: LED was on for 19 ms
17-03-17 21:46:18.138 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 21:46:18.138 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:46:18.138 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:18.138 -07 000000569 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:46:18.138 -07 000000431 INF: FPGA: Recv EXLED2ON 
17-03-17 21:46:18.148 -07 000000569 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:46:18.148 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:46:18.148 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 21:46:18.158 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:18.158 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 21:46:18.158 -07 000000569 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:46:18.158 -07 000000415 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:46:18.168 -07 000000569 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:18.168 -07 000000569 INF: GreenLED: LED was on for 19 ms
17-03-17 21:46:18.168 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:46:18.168 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:46:18.168 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 21:46:18.178 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:46:18.178 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:46:18.678 -07 000000569 INF: FPGA: Recv EMOUT
17-03-17 21:46:18.678 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:46:18.678 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:46:18.678 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 21:46:18.688 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:46:18.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:46:18.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127698347549877. ------
17-03-17 21:46:18.688 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:18.688 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17946 mm
17-03-17 21:46:18.688 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:18.688 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:46:18.688 -07 000000627 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 21:46:18.688 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:18.688 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 39203, sync = True, waitForSettling = False)
17-03-17 21:46:18.688 -07 000000480 INF: Z Motor: Moving to -0.179460 mm, started at -0.127698 mm, distance = -51.76 um
17-03-17 21:46:18.698 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:46:18.698 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:18.698 -07 000000608 INF: FPGA: Recv YRDPOS 154379
17-03-17 21:46:18.708 -07 000000480 INF: FPGA: Xmit ZDACW 39203\n [Z Motor]
17-03-17 21:46:18.708 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:46:18.708 -07 000000627 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:18.708 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:46:18.708 -07 000000627 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:46:18.708 -07 000000627 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:46:18.718 -07 000000480 INF: FPGA: 'ZDACW 39203' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:46:18.718 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:46:18.728 -07 000000627 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:46:18.738 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:18.738 -07 000000501 INF: FPGA: Recv ZDACR 39203
17-03-17 21:46:18.748 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:46:18.748 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:46:18.918 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:46:18.918 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:46:20.408 -07 000000501 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 21:46:20.408 -07 000000627 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1703 ms overall
17-03-17 21:46:20.408 -07 000000627 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:46:20.408 -07 000000627 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-17 21:46:20.408 -07 000000627 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 21:46:21.328 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.000345,
17-03-17 21:46:21.908 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:21.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:23.258 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:23.258 -07 000000608 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:46:23.268 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:23.268 -07 000000627 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:23.288 -07 000000627 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:23.288 -07 000000627 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:46:23.288 -07 000000627 INF: Y Motor: Moved to 59.9102 after 4597 ms
17-03-17 21:46:23.288 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179460 mm (DAC = 39203)
17-03-17 21:46:23.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.298 -07 000000501 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:46:23.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:46:23.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.308 -07 000000569 INF: FPGA: Recv ZSGSRD 37229
17-03-17 21:46:23.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:23.308 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.308 -07 000000012 INF: FPGA: Recv ZSGSRD 37223
17-03-17 21:46:23.318 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:46:23.318 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.318 -07 000000501 INF: FPGA: Recv ZSGSRD 37219
17-03-17 21:46:23.328 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.328 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.328 -07 000000424 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:46:23.338 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.338 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.338 -07 000000512 INF: FPGA: Recv ZSGSRD 37223
17-03-17 21:46:23.348 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.348 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.348 -07 000000608 INF: FPGA: Recv ZSGSRD 37221
17-03-17 21:46:23.358 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.358 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.358 -07 000000415 INF: FPGA: Recv ZSGSRD 37221
17-03-17 21:46:23.368 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.368 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.368 -07 000000458 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:46:23.378 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.378 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:23.378 -07 000000576 INF: FPGA: Recv ZSGSRD 37225
17-03-17 21:46:23.388 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.388 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:23.388 -07 000000459 INF: FPGA: Recv ZPIEZORD 33721
17-03-17 21:46:23.398 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:23.398 -07 000000429 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -7.8 V.
17-03-17 21:46:23.398 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37225 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37224 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37219 (-178.5 uncal um), Max = 37232 (-178.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:46:23.398 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37225, posNoise = 7, negNoise = 6
17-03-17 21:46:23.398 -07 000000429 INF: Z Motor: After move to -0.179460, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:23.398 -07 000000429 INF: Z Motor: Settle wait time = 4599 ms, measure time = 102 ms (allowed 150 ms), total time = 4701 ms
17-03-17 21:46:23.398 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:23.448 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 21:46:23.448 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:23.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:23.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:23.448 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:23.448 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:23.448 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:46:23.448 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:23.448 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:46:23.448 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:46:23.478 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:46:23.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:46:23.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:46:23.478 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:46:23.498 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:46:23.498 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 21:46:23.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:46:23.538 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:46:23.738 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:46:23.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:46:23.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:46:23.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619385640, 0x0, 559484976) start.
17-03-17 21:46:23.778 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:46:23.778 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:46:23.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:46:23.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619385640, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:46:23.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:23.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:46:23.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:46:23.978 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:23.978 -07 000000475 INF: Image SNR check: start
17-03-17 21:46:23.978 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:23.988 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:46:23.988 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:46:23.988 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=60.23]
17-03-17 21:46:23.998 -07 000000475 INF: Autofocus start
17-03-17 21:46:23.998 -07 000000475 INF: MeasureProfile start
17-03-17 21:46:24.008 -07 000000475 INF: MeasureProfile done
17-03-17 21:46:24.008 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:46:24.008 -07 000000475 INF: Autofocus finished
17-03-17 21:46:24.188 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:46:24.188 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:46:24.188 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179464648988187. ----------
17-03-17 21:46:24.188 -07 000000610 INF: Cycle	55	Tile	1	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:24.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37717, sync = True, waitForSettling = True)
17-03-17 21:46:24.198 -07 000000610 INF: Z Motor: Moving to -0.172657 mm, started at -0.179465 mm, distance = 6.81 um
17-03-17 21:46:24.198 -07 000000610 INF: FPGA: Xmit ZDACW 37717\n [Z Motor]
17-03-17 21:46:24.198 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:46:24.208 -07 000000610 INF: FPGA: 'ZDACW 37717' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:24.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:24.208 -07 000000576 INF: FPGA: Recv ZDACR 37717
17-03-17 21:46:24.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:24.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.368 -07 000000415 INF: FPGA: Recv ZSGSRD 36173
17-03-17 21:46:24.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:24.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36162
17-03-17 21:46:24.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.388 -07 000000431 INF: FPGA: Recv ZSGSRD 36168
17-03-17 21:46:24.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.398 -07 000000458 INF: FPGA: Recv ZSGSRD 36165
17-03-17 21:46:24.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.408 -07 000000576 INF: FPGA: Recv ZSGSRD 36171
17-03-17 21:46:24.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.418 -07 000000424 INF: FPGA: Recv ZSGSRD 36171
17-03-17 21:46:24.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.428 -07 000000476 INF: FPGA: Recv ZSGSRD 36165
17-03-17 21:46:24.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.438 -07 000000429 INF: FPGA: Recv ZSGSRD 36165
17-03-17 21:46:24.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36169
17-03-17 21:46:24.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:24.458 -07 000000626 INF: FPGA: Recv ZSGSRD 36166
17-03-17 21:46:24.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:24.468 -07 000000608 INF: FPGA: Recv ZPIEZORD 32312
17-03-17 21:46:24.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:24.478 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.755 V. Piezo Error = -8.5 V.
17-03-17 21:46:24.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36168 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36167 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36162 (-171.8 uncal um), Max = 36173 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:46:24.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36168, posNoise = 5, negNoise = 6
17-03-17 21:46:24.478 -07 000000610 INF: Z Motor: After move to -0.172657, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:24.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:46:24.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:24.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:24.478 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:24.478 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:24.478 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:24.478 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:24.478 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:24.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:24.478 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:24.478 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:46:24.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:24.478 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:24.488 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:46:24.488 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:24.498 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:46:24.498 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:46:24.508 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:46:24.508 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:24.508 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:46:24.508 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:24.518 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:46:24.518 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 21:46:24.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37894 150\n [Camera]
17-03-17 21:46:24.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:25.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:25.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:25.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:25.278 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:25.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:25.278 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:25.278 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:25.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:46:25.288 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:25.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:46:25.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37894 823
17-03-17 21:46:25.498 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:25.678 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:46:25.678 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:46:25.678 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:25.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:46:25.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:46:25.678 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:25.688 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:25.688 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 21:46:25.688 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:25.688 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:46:25.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:25.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:25.718 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:25.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:25.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:25.718 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:25.828 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:25.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:46:25.828 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:25.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:46:25.908 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:46:25.908 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:25.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37894 150' command took 2 ms to send, 1373 ms to get response, and 1386 ms overall
17-03-17 21:46:25.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:46:25.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172674256754345. ------
17-03-17 21:46:25.908 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:25.908 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17890 mm
17-03-17 21:46:25.908 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:25.918 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:25.918 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:46:25.918 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:46:25.918 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:46:25.918 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39081, sync = True, waitForSettling = False)
17-03-17 21:46:25.918 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:25.918 -07 000000547 INF: Z Motor: Moving to -0.178901 mm, started at -0.172674 mm, distance = -6.23 um
17-03-17 21:46:25.918 -07 000000476 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:46:25.928 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:46:25.928 -07 000000424 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:25.928 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:25.928 -07 000000424 INF: Y Motor: Moving 1332 steps2
17-03-17 21:46:25.928 -07 000000547 INF: FPGA: Xmit ZDACW 39081\n [Z Motor]
17-03-17 21:46:25.928 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:46:25.938 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:46:25.938 -07 000000547 INF: FPGA: 'ZDACW 39081' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:46:25.948 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:25.958 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:25.958 -07 000000382 INF: FPGA: Recv ZDACR 39081
17-03-17 21:46:25.968 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:46:25.968 -07 000000547 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:46:26.138 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:46:26.138 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 21:46:26.238 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 21:46:26.238 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 21:46:26.238 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:26.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 21:46:26.238 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:46:26.238 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:26.238 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:26.238 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 21:46:26.238 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:26.248 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 21:46:26.318 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:46:26.318 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:46:26.348 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:26.358 -07 000000382 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:46:26.358 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:46:26.358 -07 000000424 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:26.358 -07 000000424 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:46:26.358 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 21:46:26.708 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.027603,
17-03-17 21:46:26.908 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:26.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:27.308 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:27.308 -07 000000475 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:46:27.318 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:27.318 -07 000000424 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:27.338 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:27.338 -07 000000424 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:27.338 -07 000000424 INF: Y Motor: Moved to 60.7324 after 1422 ms (table move)
17-03-17 21:46:27.338 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178901 mm (DAC = 39081)
17-03-17 21:46:27.338 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.348 -07 000000512 INF: FPGA: Recv ZSGSRD 37138
17-03-17 21:46:27.348 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:46:27.348 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.348 -07 000000476 INF: FPGA: Recv ZSGSRD 37137
17-03-17 21:46:27.358 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:27.358 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.358 -07 000000626 INF: FPGA: Recv ZSGSRD 37136
17-03-17 21:46:27.368 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.368 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.368 -07 000000480 INF: FPGA: Recv ZSGSRD 37139
17-03-17 21:46:27.378 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.378 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.378 -07 000000415 INF: FPGA: Recv ZSGSRD 37144
17-03-17 21:46:27.388 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.388 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.388 -07 000000512 INF: FPGA: Recv ZSGSRD 37142
17-03-17 21:46:27.398 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.398 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.398 -07 000000475 INF: FPGA: Recv ZSGSRD 37139
17-03-17 21:46:27.408 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.408 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.408 -07 000000382 INF: FPGA: Recv ZSGSRD 37139
17-03-17 21:46:27.418 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.418 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.418 -07 000000431 INF: FPGA: Recv ZSGSRD 37136
17-03-17 21:46:27.428 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.428 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:27.428 -07 000000569 INF: FPGA: Recv ZSGSRD 37132
17-03-17 21:46:27.438 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.438 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:27.438 -07 000000608 INF: FPGA: Recv ZPIEZORD 33579
17-03-17 21:46:27.448 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:27.448 -07 000000429 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.963 V. Piezo Error = -7.9 V.
17-03-17 21:46:27.448 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37138 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37138 (-178.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37132 (-178.0 uncal um), Max = 37144 (-178.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:46:27.448 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37138, posNoise = 6, negNoise = 6
17-03-17 21:46:27.448 -07 000000429 INF: Z Motor: After move to -0.178901, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:27.448 -07 000000429 INF: Z Motor: Settle wait time = 1425 ms, measure time = 102 ms (allowed 150 ms), total time = 1527 ms
17-03-17 21:46:27.448 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:27.498 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 21:46:27.498 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:27.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:27.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:27.498 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:27.498 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:46:27.498 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:27.498 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:27.498 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:46:27.498 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:46:27.508 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:46:27.508 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:46:27.518 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:46:27.518 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:46:27.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:46:27.568 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:46:27.768 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:46:27.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:46:27.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:46:27.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619385640, 0x0, 559484976) start.
17-03-17 21:46:27.798 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:46:27.808 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:46:27.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 21:46:27.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619385640, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:46:27.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:27.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:46:27.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:46:27.908 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:27.908 -07 000000480 INF: Autofocus start
17-03-17 21:46:27.908 -07 000000480 INF: MeasureProfile start
17-03-17 21:46:27.908 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:27.918 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:46:27.918 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:46:27.918 -07 000000480 INF: MeasureProfile done
17-03-17 21:46:27.918 -07 000000480 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:46:27.918 -07 000000480 INF: Autofocus finished
17-03-17 21:46:28.118 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:46:28.118 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:46:28.118 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178905742531853. ----------
17-03-17 21:46:28.118 -07 000000610 INF: Cycle	55	Tile	2	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:28.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37632, sync = True, waitForSettling = True)
17-03-17 21:46:28.128 -07 000000610 INF: Z Motor: Moving to -0.172268 mm, started at -0.178906 mm, distance = 6.64 um
17-03-17 21:46:28.128 -07 000000610 INF: FPGA: Xmit ZDACW 37632\n [Z Motor]
17-03-17 21:46:28.128 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:46:28.138 -07 000000610 INF: FPGA: 'ZDACW 37632' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:28.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:28.138 -07 000000012 INF: FPGA: Recv ZDACR 37632
17-03-17 21:46:28.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.298 -07 000000475 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:46:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:28.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.308 -07 000000512 INF: FPGA: Recv ZSGSRD 36104
17-03-17 21:46:28.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.318 -07 000000431 INF: FPGA: Recv ZSGSRD 36108
17-03-17 21:46:28.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.328 -07 000000458 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:46:28.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.338 -07 000000608 INF: FPGA: Recv ZSGSRD 36105
17-03-17 21:46:28.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.348 -07 000000459 INF: FPGA: Recv ZSGSRD 36110
17-03-17 21:46:28.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.358 -07 000000415 INF: FPGA: Recv ZSGSRD 36111
17-03-17 21:46:28.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.368 -07 000000547 INF: FPGA: Recv ZSGSRD 36099
17-03-17 21:46:28.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.378 -07 000000576 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:46:28.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:28.388 -07 000000569 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:46:28.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:28.398 -07 000000459 INF: FPGA: Recv ZPIEZORD 32206
17-03-17 21:46:28.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:28.408 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.6 V.
17-03-17 21:46:28.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36106 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36106 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36099 (-171.4 uncal um), Max = 36111 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:46:28.408 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36106, posNoise = 5, negNoise = 7
17-03-17 21:46:28.408 -07 000000610 INF: Z Motor: After move to -0.172268, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:28.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:46:28.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:28.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:28.408 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:28.408 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:28.408 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:28.408 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:28.408 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:28.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:28.408 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:46:28.408 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:28.408 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:28.408 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:28.418 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:46:28.418 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:28.418 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:46:28.418 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:28.428 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:46:28.428 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:28.428 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:46:28.428 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:46:28.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37809 150\n [Camera]
17-03-17 21:46:28.638 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:29.068 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:29.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:29.068 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:29.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:29.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:29.078 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:29.078 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:29.078 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 21:46:29.078 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:29.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:46:29.268 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37809 823
17-03-17 21:46:29.418 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 976
17-03-17 21:46:29.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:46:29.478 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:46:29.478 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:29.478 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:29.478 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:46:29.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:46:29.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:46:29.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:29.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:29.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:46:29.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:29.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:29.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:29.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:29.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:46:29.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:29.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:29.628 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:29.628 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:29.628 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:46:29.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:46:29.818 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:29.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37809 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall
17-03-17 21:46:29.818 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172618
17-03-17 21:46:29.818 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17262 mm
17-03-17 21:46:29.818 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:29.828 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:46:29.828 -07 000000459 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:46:29.828 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:29.828 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37708, sync = True, waitForSettling = False)
17-03-17 21:46:29.828 -07 000000429 INF: Z Motor: Moving to -0.172616 mm, started at -0.172276 mm, distance = -0.34 um
17-03-17 21:46:29.828 -07 000000608 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:46:29.838 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:29.838 -07 000000459 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:29.838 -07 000000429 INF: FPGA: Xmit ZDACW 37708\n [Z Motor]
17-03-17 21:46:29.838 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:46:29.838 -07 000000459 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:29.838 -07 000000459 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:46:29.848 -07 000000429 INF: FPGA: 'ZDACW 37708' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:46:29.848 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:29.858 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:29.858 -07 000000424 INF: FPGA: Recv ZDACR 37708
17-03-17 21:46:29.868 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:46:29.868 -07 000000429 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:46:30.018 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:46:30.018 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:46:30.018 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:30.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:46:30.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:46:30.018 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:30.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:30.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:46:30.028 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:46:30.028 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:46:30.218 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:46:30.218 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:46:30.258 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:30.258 -07 000000576 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:46:30.268 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:46:30.268 -07 000000459 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:30.268 -07 000000459 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:46:30.268 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.182 mm/sec
17-03-17 21:46:31.218 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:31.218 -07 000000431 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:46:31.228 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:31.228 -07 000000459 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:31.248 -07 000000459 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:31.248 -07 000000459 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:31.248 -07 000000459 INF: Y Motor: Moved to 61.5630 after 1425 ms (table move)
17-03-17 21:46:31.248 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172616 mm (DAC = 37708)
17-03-17 21:46:31.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.258 -07 000000429 INF: FPGA: Recv ZSGSRD 36164
17-03-17 21:46:31.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:31.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36155
17-03-17 21:46:31.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36160
17-03-17 21:46:31.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.278 -07 000000431 INF: FPGA: Recv ZSGSRD 36159
17-03-17 21:46:31.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36163
17-03-17 21:46:31.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.298 -07 000000576 INF: FPGA: Recv ZSGSRD 36169
17-03-17 21:46:31.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.308 -07 000000012 INF: FPGA: Recv ZSGSRD 36156
17-03-17 21:46:31.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36154
17-03-17 21:46:31.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.328 -07 000000458 INF: FPGA: Recv ZSGSRD 36160
17-03-17 21:46:31.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.338 -07 000000475 INF: FPGA: Recv ZSGSRD 36154
17-03-17 21:46:31.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:31.348 -07 000000429 INF: FPGA: Recv ZPIEZORD 32293
17-03-17 21:46:31.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.358 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.6 V.
17-03-17 21:46:31.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36159 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36160 (-171.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36154 (-171.7 uncal um), Max = 36169 (-171.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:46:31.358 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36159, posNoise = 10, negNoise = 5
17-03-17 21:46:31.358 -07 000000610 INF: Z Motor: After move to -0.172616, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:31.358 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 105 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:46:31.358 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:31.408 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:46:31.408 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:31.408 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.172616438845069. ----------
17-03-17 21:46:31.408 -07 000000610 INF: Cycle	55	Tile	3	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:31.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37532, sync = True, waitForSettling = True)
17-03-17 21:46:31.408 -07 000000610 INF: Z Motor: Moving to -0.171810 mm, started at -0.172616 mm, distance = 0.81 um
17-03-17 21:46:31.408 -07 000000610 INF: FPGA: Xmit ZDACW 37532\n [Z Motor]
17-03-17 21:46:31.418 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:46:31.418 -07 000000610 INF: FPGA: 'ZDACW 37532' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:46:31.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:31.418 -07 000000501 INF: FPGA: Recv ZDACR 37532
17-03-17 21:46:31.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:46:31.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:31.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36036
17-03-17 21:46:31.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:31.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36030
17-03-17 21:46:31.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.598 -07 000000424 INF: FPGA: Recv ZSGSRD 36035
17-03-17 21:46:31.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.608 -07 000000512 INF: FPGA: Recv ZSGSRD 36029
17-03-17 21:46:31.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36030
17-03-17 21:46:31.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.628 -07 000000431 INF: FPGA: Recv ZSGSRD 36035
17-03-17 21:46:31.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36037
17-03-17 21:46:31.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.648 -07 000000415 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:46:31.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.658 -07 000000476 INF: FPGA: Recv ZSGSRD 36036
17-03-17 21:46:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:31.668 -07 000000480 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:46:31.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:31.678 -07 000000458 INF: FPGA: Recv ZPIEZORD 32144
17-03-17 21:46:31.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:31.688 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.6 V.
17-03-17 21:46:31.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36033 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36033 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36029 (-170.9 uncal um), Max = 36037 (-171.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:46:31.688 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36033, posNoise = 4, negNoise = 4
17-03-17 21:46:31.688 -07 000000610 INF: Z Motor: After move to -0.171810, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:31.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:46:31.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:31.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:31.688 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:31.688 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:31.688 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:31.688 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:31.688 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:31.688 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:31.688 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:31.688 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:31.688 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:31.688 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:31.698 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:31.698 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:31.698 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:46:31.698 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:31.708 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:46:31.708 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:31.708 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:46:31.708 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:46:31.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37708 150\n [Camera]
17-03-17 21:46:31.908 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:31.918 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:32.068 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.018051,
17-03-17 21:46:32.348 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:32.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:32.348 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:32.348 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:32.348 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:46:32.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:32.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:32.358 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:32.358 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:32.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:46:32.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37708 823
17-03-17 21:46:32.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:32.728 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:46:32.728 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:46:32.728 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:32.728 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:46:32.728 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:46:32.728 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:32.738 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:32.738 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:46:32.738 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:32.738 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:46:32.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:32.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:32.908 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:32.908 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:32.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:46:32.908 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:32.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:32.908 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:32.908 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:32.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:46:33.098 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:46:33.098 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:33.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37708 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-17 21:46:33.098 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172132
17-03-17 21:46:33.098 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17213 mm
17-03-17 21:46:33.098 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:33.108 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37602, sync = True, waitForSettling = False)
17-03-17 21:46:33.108 -07 000000431 INF: Z Motor: Moving to -0.172131 mm, started at -0.171807 mm, distance = -0.32 um
17-03-17 21:46:33.108 -07 000000431 INF: FPGA: Xmit ZDACW 37602\n [Z Motor]
17-03-17 21:46:33.108 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:46:33.108 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-17 21:46:33.108 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:46:33.118 -07 000000431 INF: FPGA: 'ZDACW 37602' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:33.118 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:33.118 -07 000000458 INF: FPGA: Recv ZDACR 37602
17-03-17 21:46:33.128 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:33.128 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:33.128 -07 000000431 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 21:46:33.128 -07 000000382 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:46:33.138 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:46:33.138 -07 000000501 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:33.138 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:33.138 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:46:33.138 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:33.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:46:33.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:46:33.288 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:33.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:46:33.288 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:46:33.288 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:33.288 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:33.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:33.298 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:46:33.298 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:46:33.518 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:46:33.518 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 379 ms overall
17-03-17 21:46:33.558 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:33.558 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:46:33.568 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:33.568 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:33.568 -07 000000501 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:46:33.568 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.215 mm/sec
17-03-17 21:46:34.518 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:34.518 -07 000000415 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:46:34.528 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:34.528 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:34.548 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:34.548 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:34.548 -07 000000501 INF: Y Motor: Moved to 62.3950 after 1442 ms (table move)
17-03-17 21:46:34.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172131 mm (DAC = 37602)
17-03-17 21:46:34.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.548 -07 000000459 INF: FPGA: Recv ZSGSRD 36084
17-03-17 21:46:34.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:46:34.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.558 -07 000000458 INF: FPGA: Recv ZSGSRD 36084
17-03-17 21:46:34.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36076
17-03-17 21:46:34.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.578 -07 000000382 INF: FPGA: Recv ZSGSRD 36089
17-03-17 21:46:34.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.588 -07 000000569 INF: FPGA: Recv ZSGSRD 36086
17-03-17 21:46:34.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.598 -07 000000547 INF: FPGA: Recv ZSGSRD 36093
17-03-17 21:46:34.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.608 -07 000000627 INF: FPGA: Recv ZSGSRD 36092
17-03-17 21:46:34.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36083
17-03-17 21:46:34.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.628 -07 000000415 INF: FPGA: Recv ZSGSRD 36082
17-03-17 21:46:34.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36081
17-03-17 21:46:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:34.648 -07 000000480 INF: FPGA: Recv ZPIEZORD 32262
17-03-17 21:46:34.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:34.658 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.5 V.
17-03-17 21:46:34.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36085 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36084 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36076 (-171.2 uncal um), Max = 36093 (-171.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:46:34.658 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36085, posNoise = 8, negNoise = 9
17-03-17 21:46:34.658 -07 000000610 INF: Z Motor: After move to -0.172131, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:34.658 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:46:34.658 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:34.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:46:34.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:34.708 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.172141047146579. ----------
17-03-17 21:46:34.708 -07 000000610 INF: Cycle	55	Tile	4	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:34.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37425, sync = True, waitForSettling = True)
17-03-17 21:46:34.708 -07 000000610 INF: Z Motor: Moving to -0.171321 mm, started at -0.172141 mm, distance = 0.82 um
17-03-17 21:46:34.708 -07 000000610 INF: FPGA: Xmit ZDACW 37425\n [Z Motor]
17-03-17 21:46:34.708 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:46:34.718 -07 000000610 INF: FPGA: 'ZDACW 37425' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:46:34.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:34.718 -07 000000608 INF: FPGA: Recv ZDACR 37425
17-03-17 21:46:34.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:34.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.878 -07 000000626 INF: FPGA: Recv ZSGSRD 35959
17-03-17 21:46:34.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.888 -07 000000012 INF: FPGA: Recv ZSGSRD 35958
17-03-17 21:46:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.898 -07 000000547 INF: FPGA: Recv ZSGSRD 35960
17-03-17 21:46:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.908 -07 000000458 INF: FPGA: Recv ZSGSRD 35957
17-03-17 21:46:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.918 -07 000000480 INF: FPGA: Recv ZSGSRD 35967
17-03-17 21:46:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35960
17-03-17 21:46:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.938 -07 000000012 INF: FPGA: Recv ZSGSRD 35962
17-03-17 21:46:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.948 -07 000000459 INF: FPGA: Recv ZSGSRD 35956
17-03-17 21:46:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.958 -07 000000512 INF: FPGA: Recv ZSGSRD 35955
17-03-17 21:46:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:34.968 -07 000000608 INF: FPGA: Recv ZSGSRD 35961
17-03-17 21:46:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:34.978 -07 000000382 INF: FPGA: Recv ZPIEZORD 32082
17-03-17 21:46:34.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:34.988 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -8.6 V.
17-03-17 21:46:34.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35960 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35960 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35955 (-170.4 uncal um), Max = 35967 (-170.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:46:34.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35960, posNoise = 7, negNoise = 5
17-03-17 21:46:34.988 -07 000000610 INF: Z Motor: After move to -0.171321, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:34.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:46:34.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:34.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:34.988 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:34.988 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:34.988 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:34.988 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:34.988 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:34.988 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:34.988 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:34.988 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:34.988 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:34.988 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:34.998 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:34.998 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:34.998 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:46:34.998 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:35.008 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:46:35.008 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:46:35.008 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 21:46:35.008 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:35.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37602 150\n [Camera]
17-03-17 21:46:35.218 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:35.648 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:35.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:35.658 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:35.658 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:35.658 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:46:35.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:35.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:35.658 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:35.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:35.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:46:35.848 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37602 823
17-03-17 21:46:35.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:36.048 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:46:36.048 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:46:36.048 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:36.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:46:36.048 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:46:36.048 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:36.058 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:36.058 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:46:36.058 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:36.058 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:46:36.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:36.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:36.208 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:36.208 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:36.208 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:46:36.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:36.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:36.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:36.208 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:36.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:46:36.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:46:36.398 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:36.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37602 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-17 21:46:36.398 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171898
17-03-17 21:46:36.398 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17190 mm
17-03-17 21:46:36.398 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:36.408 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37551, sync = True, waitForSettling = False)
17-03-17 21:46:36.408 -07 000000429 INF: Z Motor: Moving to -0.171897 mm, started at -0.171338 mm, distance = -0.56 um
17-03-17 21:46:36.408 -07 000000429 INF: FPGA: Xmit ZDACW 37551\n [Z Motor]
17-03-17 21:46:36.408 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:46:36.408 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:46:36.408 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:46:36.418 -07 000000429 INF: FPGA: 'ZDACW 37551' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:36.418 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:36.418 -07 000000415 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:46:36.428 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:46:36.428 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:36.428 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:36.428 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:46:36.428 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:36.428 -07 000000431 INF: FPGA: Recv ZDACR 37551
17-03-17 21:46:36.438 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:46:36.438 -07 000000429 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:46:36.438 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:36.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:46:36.588 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:46:36.588 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:36.588 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:36.588 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:46:36.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:46:36.588 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:46:36.588 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:36.598 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:36.598 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:46:36.808 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:46:36.808 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 21:46:36.848 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:36.858 -07 000000415 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:46:36.858 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:46:36.858 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:36.858 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:46:36.858 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 21:46:36.908 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:36.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:37.448 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.001704,
17-03-17 21:46:37.808 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:37.808 -07 000000476 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:46:37.818 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.818 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:37.838 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:37.838 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:37.838 -07 000000512 INF: Y Motor: Moved to 63.2236 after 1433 ms (table move)
17-03-17 21:46:37.838 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171897 mm (DAC = 37551)
17-03-17 21:46:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36044
17-03-17 21:46:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:37.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.848 -07 000000429 INF: FPGA: Recv ZSGSRD 36042
17-03-17 21:46:37.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.858 -07 000000547 INF: FPGA: Recv ZSGSRD 36048
17-03-17 21:46:37.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.868 -07 000000415 INF: FPGA: Recv ZSGSRD 36048
17-03-17 21:46:37.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.878 -07 000000512 INF: FPGA: Recv ZSGSRD 36059
17-03-17 21:46:37.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.888 -07 000000480 INF: FPGA: Recv ZSGSRD 36052
17-03-17 21:46:37.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.898 -07 000000627 INF: FPGA: Recv ZSGSRD 36048
17-03-17 21:46:37.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.908 -07 000000569 INF: FPGA: Recv ZSGSRD 36047
17-03-17 21:46:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.918 -07 000000458 INF: FPGA: Recv ZSGSRD 36042
17-03-17 21:46:37.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:37.928 -07 000000512 INF: FPGA: Recv ZSGSRD 36048
17-03-17 21:46:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:37.938 -07 000000459 INF: FPGA: Recv ZPIEZORD 32193
17-03-17 21:46:37.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:37.948 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.730 V. Piezo Error = -8.5 V.
17-03-17 21:46:37.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36048 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36048 (-171.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36042 (-171.0 uncal um), Max = 36059 (-171.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:46:37.948 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36048, posNoise = 11, negNoise = 6
17-03-17 21:46:37.948 -07 000000610 INF: Z Motor: After move to -0.171897, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:37.948 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:46:37.948 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:37.998 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:46:37.998 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:37.998 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.171903351297334. ----------
17-03-17 21:46:37.998 -07 000000610 INF: Cycle	55	Tile	5	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:37.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True)
17-03-17 21:46:37.998 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.171903 mm, distance = 0.82 um
17-03-17 21:46:37.998 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor]
17-03-17 21:46:37.998 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:46:38.008 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:46:38.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:38.008 -07 000000476 INF: FPGA: Recv ZDACR 37374
17-03-17 21:46:38.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35930
17-03-17 21:46:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.188 -07 000000458 INF: FPGA: Recv ZSGSRD 35924
17-03-17 21:46:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35924
17-03-17 21:46:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35923
17-03-17 21:46:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.238 -07 000000608 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35918
17-03-17 21:46:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:38.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35929
17-03-17 21:46:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:38.268 -07 000000512 INF: FPGA: Recv ZPIEZORD 32003
17-03-17 21:46:38.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:38.278 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -8.7 V.
17-03-17 21:46:38.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35923 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35918 (-170.2 uncal um), Max = 35930 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:46:38.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35923, posNoise = 7, negNoise = 5
17-03-17 21:46:38.278 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:38.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:46:38.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:38.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:38.278 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:38.278 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:38.278 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:38.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:38.278 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:38.278 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:38.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:38.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:38.278 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:38.278 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:38.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:46:38.288 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:38.288 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:46:38.288 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:38.298 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:46:38.298 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:38.298 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:46:38.298 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:38.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37551 150\n [Camera]
17-03-17 21:46:38.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:38.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:38.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:38.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:38.938 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:38.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:46:38.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:38.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:38.938 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:38.948 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:38.948 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:46:39.128 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37551 823
17-03-17 21:46:39.278 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:39.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:46:39.318 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:46:39.318 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:39.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:46:39.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:46:39.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:39.318 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:39.318 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:46:39.328 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:39.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:46:39.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:39.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:39.498 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:39.498 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:39.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:46:39.498 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:39.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:39.498 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:39.498 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:39.498 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:46:39.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:46:39.688 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:39.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37551 150' command took 2 ms to send, 1372 ms to get response, and 1383 ms overall
17-03-17 21:46:39.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:46:39.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.171100324779614. ------
17-03-17 21:46:39.688 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17745 mm
17-03-17 21:46:39.688 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:39.688 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:39.698 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38764, sync = True, waitForSettling = False)
17-03-17 21:46:39.698 -07 000000438 INF: Z Motor: Moving to -0.177450 mm, started at -0.171100 mm, distance = -6.35 um
17-03-17 21:46:39.698 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:39.698 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:46:39.698 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:46:39.708 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:39.708 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:39.708 -07 000000458 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:46:39.718 -07 000000438 INF: FPGA: Xmit ZDACW 38764\n [Z Motor]
17-03-17 21:46:39.718 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:46:39.718 -07 000000424 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:39.718 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:39.718 -07 000000424 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:46:39.718 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:46:39.728 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:46:39.728 -07 000000438 INF: FPGA: 'ZDACW 38764' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:46:39.738 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:39.748 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:39.748 -07 000000512 INF: FPGA: Recv ZDACR 38764
17-03-17 21:46:39.758 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:46:39.758 -07 000000438 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 21:46:39.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:46:39.878 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:46:39.878 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:39.878 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:46:39.878 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:46:39.878 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:39.878 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:39.878 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:46:39.878 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:39.888 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:46:39.928 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:46:39.928 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:46:40.108 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:46:40.108 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:46:40.148 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:40.158 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:46:40.158 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:46:40.158 -07 000000424 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:40.158 -07 000000424 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:46:40.158 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:46:41.108 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:41.108 -07 000000475 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:46:41.118 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.118 -07 000000424 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:41.138 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:41.138 -07 000000424 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:46:41.138 -07 000000424 INF: Y Motor: Moved to 64.0566 after 1439 ms (table move)
17-03-17 21:46:41.138 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177450 mm (DAC = 38764)
17-03-17 21:46:41.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.138 -07 000000476 INF: FPGA: Recv ZSGSRD 36916
17-03-17 21:46:41.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:41.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.148 -07 000000459 INF: FPGA: Recv ZSGSRD 36916
17-03-17 21:46:41.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.158 -07 000000415 INF: FPGA: Recv ZSGSRD 36917
17-03-17 21:46:41.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.168 -07 000000501 INF: FPGA: Recv ZSGSRD 36915
17-03-17 21:46:41.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.178 -07 000000475 INF: FPGA: Recv ZSGSRD 36907
17-03-17 21:46:41.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.188 -07 000000476 INF: FPGA: Recv ZSGSRD 36917
17-03-17 21:46:41.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36904
17-03-17 21:46:41.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36907
17-03-17 21:46:41.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36904
17-03-17 21:46:41.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:41.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36916
17-03-17 21:46:41.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.238 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:41.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 33319
17-03-17 21:46:41.248 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:46:41.248 -07 000000382 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -8.0 V.
17-03-17 21:46:41.248 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36912 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36916 (-176.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36904 (-176.5 uncal um), Max = 36917 (-176.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:46:41.248 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36912, posNoise = 5, negNoise = 8
17-03-17 21:46:41.248 -07 000000382 INF: Z Motor: After move to -0.177450, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:41.248 -07 000000382 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:46:41.248 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:41.298 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:46:41.298 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:41.298 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:41.298 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:46:41.298 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:41.308 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:41.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:41.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:46:41.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:46:41.308 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:46:41.318 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:46:41.318 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:46:41.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:46:41.368 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:46:41.568 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:46:41.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:46:41.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:46:41.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) start.
17-03-17 21:46:41.608 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:46:41.608 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:46:41.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:46:41.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2386300176, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:46:41.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:41.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:46:41.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:46:41.708 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:41.708 -07 000000626 INF: Autofocus start
17-03-17 21:46:41.708 -07 000000626 INF: MeasureProfile start
17-03-17 21:46:41.708 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:41.718 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:46:41.718 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:46:41.718 -07 000000626 INF: MeasureProfile done
17-03-17 21:46:41.718 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:46:41.718 -07 000000626 INF: Autofocus finished
17-03-17 21:46:41.908 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:41.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:41.918 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:46:41.918 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 21:46:41.928 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177453870587815. ----------
17-03-17 21:46:41.928 -07 000000610 INF: Cycle	55	Tile	6	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:41.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37315, sync = True, waitForSettling = True)
17-03-17 21:46:41.928 -07 000000610 INF: Z Motor: Moving to -0.170817 mm, started at -0.177454 mm, distance = 6.64 um
17-03-17 21:46:41.928 -07 000000610 INF: FPGA: Xmit ZDACW 37315\n [Z Motor]
17-03-17 21:46:41.928 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:46:41.938 -07 000000610 INF: FPGA: 'ZDACW 37315' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:46:41.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:41.938 -07 000000458 INF: FPGA: Recv ZDACR 37315
17-03-17 21:46:41.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:41.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.098 -07 000000424 INF: FPGA: Recv ZSGSRD 35879
17-03-17 21:46:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.108 -07 000000569 INF: FPGA: Recv ZSGSRD 35886
17-03-17 21:46:42.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.118 -07 000000012 INF: FPGA: Recv ZSGSRD 35879
17-03-17 21:46:42.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.128 -07 000000480 INF: FPGA: Recv ZSGSRD 35881
17-03-17 21:46:42.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35877
17-03-17 21:46:42.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.148 -07 000000475 INF: FPGA: Recv ZSGSRD 35880
17-03-17 21:46:42.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.158 -07 000000382 INF: FPGA: Recv ZSGSRD 35886
17-03-17 21:46:42.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35880
17-03-17 21:46:42.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35882
17-03-17 21:46:42.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:42.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35877
17-03-17 21:46:42.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:42.198 -07 000000475 INF: FPGA: Recv ZPIEZORD 31942
17-03-17 21:46:42.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:42.208 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -8.7 V.
17-03-17 21:46:42.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35881 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35880 (-169.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35877 (-169.9 uncal um), Max = 35886 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:46:42.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35881, posNoise = 5, negNoise = 4
17-03-17 21:46:42.208 -07 000000610 INF: Z Motor: After move to -0.170817, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:42.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:46:42.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:42.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:42.208 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:42.208 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:42.208 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:42.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:42.208 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:42.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:42.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:42.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:42.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:42.208 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:42.218 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:46:42.218 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:42.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:42.218 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:42.228 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:46:42.228 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:46:42.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:46:42.228 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:46:42.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37492 150\n [Camera]
17-03-17 21:46:42.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:42.818 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.028963,
17-03-17 21:46:42.868 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:42.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:42.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:42.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:42.868 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:42.868 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:42.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:46:42.868 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:42.868 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:42.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 21:46:43.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37492 823
17-03-17 21:46:43.208 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:43.248 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:46:43.248 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:46:43.248 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:43.248 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:46:43.248 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:46:43.248 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:43.258 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:46:43.258 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:46:43.258 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:46:43.258 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:46:43.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:46:43.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:46:43.418 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:43.418 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:43.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 21:46:43.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:46:43.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:46:43.428 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:43.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:43.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 21:46:43.608 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:46:43.608 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:43.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37492 150' command took 2 ms to send, 1378 ms to get response, and 1386 ms overall
17-03-17 21:46:43.618 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171356
17-03-17 21:46:43.618 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17136 mm
17-03-17 21:46:43.618 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:43.618 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:46:43.618 -07 000000547 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:46:43.618 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:43.618 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 37433, sync = True, waitForSettling = False)
17-03-17 21:46:43.618 -07 000000458 INF: Z Motor: Moving to -0.171357 mm, started at -0.170831 mm, distance = -0.53 um
17-03-17 21:46:43.618 -07 000000459 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:46:43.628 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:46:43.628 -07 000000547 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:43.628 -07 000000547 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:43.628 -07 000000547 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:46:43.628 -07 000000458 INF: FPGA: Xmit ZDACW 37433\n [Z Motor]
17-03-17 21:46:43.628 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:46:43.638 -07 000000458 INF: FPGA: 'ZDACW 37433' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:46:43.638 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:43.638 -07 000000438 INF: FPGA: Recv ZDACR 37433
17-03-17 21:46:43.648 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:43.648 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:43.648 -07 000000458 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 21:46:43.808 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:46:43.808 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:46:43.808 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:43.808 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:46:43.808 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:46:43.808 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:43.808 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:43.818 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:46:43.818 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:46:43.818 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:46:44.018 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:46:44.018 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:46:44.058 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:44.068 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:46:44.068 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:46:44.068 -07 000000547 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:44.068 -07 000000547 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:46:44.068 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 21:46:45.018 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:45.018 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:46:45.028 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:45.028 -07 000000547 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:45.048 -07 000000547 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:45.048 -07 000000547 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:45.048 -07 000000547 INF: Y Motor: Moved to 64.8784 after 1429 ms (table move)
17-03-17 21:46:45.048 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171357 mm (DAC = 37433)
17-03-17 21:46:45.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35963
17-03-17 21:46:45.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:45.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35962
17-03-17 21:46:45.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:45.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.068 -07 000000459 INF: FPGA: Recv ZSGSRD 35970
17-03-17 21:46:45.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.078 -07 000000429 INF: FPGA: Recv ZSGSRD 35967
17-03-17 21:46:45.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.088 -07 000000512 INF: FPGA: Recv ZSGSRD 35968
17-03-17 21:46:45.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35968
17-03-17 21:46:45.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35966
17-03-17 21:46:45.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.118 -07 000000608 INF: FPGA: Recv ZSGSRD 35959
17-03-17 21:46:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35955
17-03-17 21:46:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35960
17-03-17 21:46:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:45.148 -07 000000012 INF: FPGA: Recv ZPIEZORD 32086
17-03-17 21:46:45.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.158 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.712 V. Piezo Error = -8.6 V.
17-03-17 21:46:45.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35964 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35964 (-170.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35955 (-170.4 uncal um), Max = 35970 (-170.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:46:45.158 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35964, posNoise = 6, negNoise = 9
17-03-17 21:46:45.158 -07 000000610 INF: Z Motor: After move to -0.171357, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:45.158 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 102 ms (allowed 150 ms), total time = 1533 ms
17-03-17 21:46:45.158 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:45.208 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 21:46:45.208 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:45.208 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.171363717477426. ----------
17-03-17 21:46:45.208 -07 000000610 INF: Cycle	55	Tile	7	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:45.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37256, sync = True, waitForSettling = True)
17-03-17 21:46:45.208 -07 000000610 INF: Z Motor: Moving to -0.170547 mm, started at -0.171364 mm, distance = 0.82 um
17-03-17 21:46:45.208 -07 000000610 INF: FPGA: Xmit ZDACW 37256\n [Z Motor]
17-03-17 21:46:45.208 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:46:45.218 -07 000000610 INF: FPGA: 'ZDACW 37256' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:46:45.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:45.218 -07 000000626 INF: FPGA: Recv ZDACR 37256
17-03-17 21:46:45.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:45.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.378 -07 000000476 INF: FPGA: Recv ZSGSRD 35837
17-03-17 21:46:45.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:45.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.388 -07 000000501 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:46:45.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35844
17-03-17 21:46:45.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.408 -07 000000459 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:46:45.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35827
17-03-17 21:46:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35836
17-03-17 21:46:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.438 -07 000000627 INF: FPGA: Recv ZSGSRD 35839
17-03-17 21:46:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.448 -07 000000012 INF: FPGA: Recv ZSGSRD 35840
17-03-17 21:46:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.458 -07 000000576 INF: FPGA: Recv ZSGSRD 35831
17-03-17 21:46:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:45.468 -07 000000626 INF: FPGA: Recv ZSGSRD 35840
17-03-17 21:46:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:45.478 -07 000000512 INF: FPGA: Recv ZPIEZORD 31895
17-03-17 21:46:45.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:45.488 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -8.7 V.
17-03-17 21:46:45.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35837 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35827 (-169.6 uncal um), Max = 35844 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:46:45.488 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35837, posNoise = 7, negNoise = 10
17-03-17 21:46:45.488 -07 000000610 INF: Z Motor: After move to -0.170547, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:45.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:46:45.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:45.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:45.488 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:45.488 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:45.488 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:45.488 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:45.488 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:45.488 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:45.488 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:45.488 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:45.488 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:45.488 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:45.498 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:46:45.498 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:45.498 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:45.498 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:45.498 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:46:45.498 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:46:45.508 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:46:45.508 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:46:45.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37433 150\n [Camera]
17-03-17 21:46:45.708 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:46.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:46.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:46.148 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:46.148 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:46.148 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 21:46:46.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:46.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:46.148 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:46.148 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:46.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 21:46:46.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37433 823
17-03-17 21:46:46.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:46.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:46:46.528 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:46:46.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:46.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:46:46.528 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:46:46.528 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:46.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:46.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:46:46.538 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:46.538 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:46:46.698 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:46.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:46.698 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:46.698 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:46.698 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 21:46:46.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:46.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:46.698 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:46.708 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:46.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) start.
17-03-17 21:46:46.888 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:46:46.888 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:46.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37433 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-17 21:46:46.888 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.171056
17-03-17 21:46:46.898 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17106 mm
17-03-17 21:46:46.898 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:46.898 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:46:46.898 -07 000000627 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:46:46.898 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:46.898 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37367, sync = True, waitForSettling = False)
17-03-17 21:46:46.898 -07 000000415 INF: Z Motor: Moving to -0.171055 mm, started at -0.170548 mm, distance = -0.51 um
17-03-17 21:46:46.898 -07 000000475 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:46:46.908 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:46:46.908 -07 000000627 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:46.908 -07 000000627 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:46.908 -07 000000627 INF: Y Motor: Moving 1351 steps-29
17-03-17 21:46:46.908 -07 000000415 INF: FPGA: Xmit ZDACW 37367\n [Z Motor]
17-03-17 21:46:46.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:46.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:46.908 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:46:46.918 -07 000000415 INF: FPGA: 'ZDACW 37367' command took 3 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:46:46.918 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:46.928 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:46.928 -07 000000608 INF: FPGA: Recv ZDACR 37367
17-03-17 21:46:46.938 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:46:46.938 -07 000000415 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 21:46:47.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:46:47.088 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:46:47.088 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:47.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 3122434152, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:46:47.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:46:47.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:47.088 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:47.088 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:46:47.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:47.098 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:46:47.298 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:46:47.298 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 387 ms overall
17-03-17 21:46:47.338 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:47.338 -07 000000438 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:46:47.348 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:47.348 -07 000000627 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:47.348 -07 000000627 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:46:47.348 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 21:46:48.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.028963,
17-03-17 21:46:48.298 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:48.298 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:46:48.308 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:48.308 -07 000000627 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:48.328 -07 000000627 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:48.328 -07 000000627 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:48.328 -07 000000627 INF: Y Motor: Moved to 65.7139 after 1435 ms (table move)
17-03-17 21:46:48.338 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171055 mm (DAC = 37367)
17-03-17 21:46:48.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:46:48.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.348 -07 000000424 INF: FPGA: Recv ZSGSRD 35919
17-03-17 21:46:48.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35916
17-03-17 21:46:48.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.368 -07 000000480 INF: FPGA: Recv ZSGSRD 35913
17-03-17 21:46:48.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:48.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:48.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.388 -07 000000438 INF: FPGA: Recv ZSGSRD 35923
17-03-17 21:46:48.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.398 -07 000000429 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:48.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.408 -07 000000547 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:46:48.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:46:48.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35921
17-03-17 21:46:48.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:48.438 -07 000000476 INF: FPGA: Recv ZPIEZORD 31982
17-03-17 21:46:48.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.448 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.7 V.
17-03-17 21:46:48.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35912 (-170.2 uncal um), Max = 35923 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:46:48.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 5, negNoise = 6
17-03-17 21:46:48.448 -07 000000610 INF: Z Motor: After move to -0.171055, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:48.448 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 110 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:46:48.448 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:48.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 21:46:48.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:48.488 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.171068203718905. ----------
17-03-17 21:46:48.488 -07 000000610 INF: Cycle	55	Tile	8	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:48.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37190, sync = True, waitForSettling = True)
17-03-17 21:46:48.488 -07 000000610 INF: Z Motor: Moving to -0.170245 mm, started at -0.171068 mm, distance = 0.82 um
17-03-17 21:46:48.498 -07 000000610 INF: FPGA: Xmit ZDACW 37190\n [Z Motor]
17-03-17 21:46:48.498 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:46:48.508 -07 000000610 INF: FPGA: 'ZDACW 37190' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:46:48.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:48.508 -07 000000012 INF: FPGA: Recv ZDACR 37190
17-03-17 21:46:48.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:48.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.668 -07 000000576 INF: FPGA: Recv ZSGSRD 35793
17-03-17 21:46:48.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:48.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.678 -07 000000627 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:46:48.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35794
17-03-17 21:46:48.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.698 -07 000000512 INF: FPGA: Recv ZSGSRD 35795
17-03-17 21:46:48.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35799
17-03-17 21:46:48.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.718 -07 000000576 INF: FPGA: Recv ZSGSRD 35788
17-03-17 21:46:48.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.728 -07 000000626 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:46:48.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.738 -07 000000476 INF: FPGA: Recv ZSGSRD 35791
17-03-17 21:46:48.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.748 -07 000000459 INF: FPGA: Recv ZSGSRD 35793
17-03-17 21:46:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:48.758 -07 000000627 INF: FPGA: Recv ZSGSRD 35795
17-03-17 21:46:48.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:48.768 -07 000000012 INF: FPGA: Recv ZPIEZORD 31839
17-03-17 21:46:48.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:48.778 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -8.7 V.
17-03-17 21:46:48.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35793 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35793 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35788 (-169.4 uncal um), Max = 35799 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:46:48.778 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35793, posNoise = 6, negNoise = 5
17-03-17 21:46:48.778 -07 000000610 INF: Z Motor: After move to -0.170245, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:48.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 21:46:48.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:48.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:48.778 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:48.778 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:48.778 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:48.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:48.778 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:48.778 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:48.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:48.778 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:48.778 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:48.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:48.788 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:48.788 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:48.788 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:46:48.788 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:48.798 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:46:48.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:48.798 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:46:48.798 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:46:48.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37367 150\n [Camera]
17-03-17 21:46:49.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:49.438 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:49.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:49.438 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:49.438 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:49.438 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 3157856416, 0x0, 391868352) start.
17-03-17 21:46:49.448 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:49.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:49.448 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:49.598 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:49.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:46:49.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37367 823
17-03-17 21:46:49.788 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:49.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 3157856416, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:46:49.838 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:46:49.838 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:49.848 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:49.848 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:46:49.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:46:49.968 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:46:49.968 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:49.968 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:49.978 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 21:46:49.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:49.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:49.998 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:49.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:49.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:49.998 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:50.008 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:50.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:46:50.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:50.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:46:50.188 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:46:50.188 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:50.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37367 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-17 21:46:50.188 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170790
17-03-17 21:46:50.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17079 mm
17-03-17 21:46:50.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:50.188 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:46:50.188 -07 000000459 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 21:46:50.188 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:50.198 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37309, sync = True, waitForSettling = False)
17-03-17 21:46:50.198 -07 000000547 INF: Z Motor: Moving to -0.170790 mm, started at -0.170265 mm, distance = -0.52 um
17-03-17 21:46:50.198 -07 000000547 INF: FPGA: Xmit ZDACW 37309\n [Z Motor]
17-03-17 21:46:50.198 -07 000000501 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:46:50.198 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:46:50.198 -07 000000459 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:50.198 -07 000000459 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:50.198 -07 000000459 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:46:50.198 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:46:50.208 -07 000000547 INF: FPGA: 'ZDACW 37309' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:50.208 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:50.208 -07 000000012 INF: FPGA: Recv ZDACR 37309
17-03-17 21:46:50.218 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:50.218 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:50.218 -07 000000547 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 21:46:50.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:46:50.388 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:46:50.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:50.388 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:50.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:46:50.388 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:46:50.388 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:50.388 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:50.388 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:46:50.398 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:46:50.588 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:46:50.588 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:46:50.628 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:50.638 -07 000000547 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:46:50.638 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:50.638 -07 000000459 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:50.638 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:46:50.638 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.123 mm/sec
17-03-17 21:46:51.588 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:51.588 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:46:51.598 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:51.598 -07 000000459 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:51.618 -07 000000459 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:51.618 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:51.618 -07 000000459 INF: Y Motor: Moved to 66.5386 after 1425 ms (table move)
17-03-17 21:46:51.618 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170790 mm (DAC = 37309)
17-03-17 21:46:51.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.628 -07 000000501 INF: FPGA: Recv ZSGSRD 35875
17-03-17 21:46:51.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:51.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35878
17-03-17 21:46:51.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.638 -07 000000438 INF: FPGA: Recv ZSGSRD 35875
17-03-17 21:46:51.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35880
17-03-17 21:46:51.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.658 -07 000000576 INF: FPGA: Recv ZSGSRD 35884
17-03-17 21:46:51.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.668 -07 000000458 INF: FPGA: Recv ZSGSRD 35877
17-03-17 21:46:51.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35874
17-03-17 21:46:51.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35872
17-03-17 21:46:51.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.698 -07 000000512 INF: FPGA: Recv ZSGSRD 35875
17-03-17 21:46:51.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.708 -07 000000626 INF: FPGA: Recv ZSGSRD 35876
17-03-17 21:46:51.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:51.718 -07 000000382 INF: FPGA: Recv ZPIEZORD 31989
17-03-17 21:46:51.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.728 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -8.6 V.
17-03-17 21:46:51.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35877 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35876 (-169.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35872 (-169.9 uncal um), Max = 35884 (-170.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:46:51.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35877, posNoise = 7, negNoise = 5
17-03-17 21:46:51.728 -07 000000610 INF: Z Motor: After move to -0.170790, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:51.728 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 103 ms (allowed 150 ms), total time = 1529 ms
17-03-17 21:46:51.728 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:51.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:46:51.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:51.778 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.170804811021093. ----------
17-03-17 21:46:51.778 -07 000000610 INF: Cycle	55	Tile	9	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:51.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37132, sync = True, waitForSettling = True)
17-03-17 21:46:51.778 -07 000000610 INF: Z Motor: Moving to -0.169979 mm, started at -0.170805 mm, distance = 0.83 um
17-03-17 21:46:51.778 -07 000000610 INF: FPGA: Xmit ZDACW 37132\n [Z Motor]
17-03-17 21:46:51.788 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:46:51.788 -07 000000610 INF: FPGA: 'ZDACW 37132' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:46:51.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:51.788 -07 000000627 INF: FPGA: Recv ZDACR 37132
17-03-17 21:46:51.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:51.908 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:51.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:51.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.948 -07 000000576 INF: FPGA: Recv ZSGSRD 35751
17-03-17 21:46:51.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:51.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35757
17-03-17 21:46:51.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.968 -07 000000569 INF: FPGA: Recv ZSGSRD 35749
17-03-17 21:46:51.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.978 -07 000000459 INF: FPGA: Recv ZSGSRD 35751
17-03-17 21:46:51.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:51.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35750
17-03-17 21:46:51.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:51.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:51.998 -07 000000512 INF: FPGA: Recv ZSGSRD 35751
17-03-17 21:46:52.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:52.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:52.008 -07 000000415 INF: FPGA: Recv ZSGSRD 35750
17-03-17 21:46:52.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:52.018 -07 000000424 INF: FPGA: Recv ZSGSRD 35747
17-03-17 21:46:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:52.028 -07 000000626 INF: FPGA: Recv ZSGSRD 35756
17-03-17 21:46:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:52.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35751
17-03-17 21:46:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:52.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:52.048 -07 000000012 INF: FPGA: Recv ZPIEZORD 31810
17-03-17 21:46:52.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:52.058 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.7 V.
17-03-17 21:46:52.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35751 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35751 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35747 (-169.1 uncal um), Max = 35757 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:46:52.058 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35751, posNoise = 6, negNoise = 4
17-03-17 21:46:52.058 -07 000000610 INF: Z Motor: After move to -0.169979, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:52.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 21:46:52.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:52.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:52.058 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:52.058 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:52.058 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:52.058 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:52.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:52.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:52.058 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:52.058 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:52.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:46:52.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:52.068 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:46:52.068 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:52.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:52.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:52.078 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:46:52.078 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:46:52.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:46:52.078 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:46:52.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37309 150\n [Camera]
17-03-17 21:46:52.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:52.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 631
17-03-17 21:46:52.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 631
17-03-17 21:46:52.728 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:52.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 631
17-03-17 21:46:52.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 631
17-03-17 21:46:52.728 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:52.838 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:52.848 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:46:52.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:52.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:46:52.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37309 824
17-03-17 21:46:53.068 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:53.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:46:53.218 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:46:53.218 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:53.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:46:53.218 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:46:53.218 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:53.218 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:53.218 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 21:46:53.218 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:53.228 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 21:46:53.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:53.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:53.278 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:53.278 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:53.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:53.278 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:53.278 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:53.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:46:53.288 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:53.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:46:53.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:46:53.468 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:53.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37309 150' command took 2 ms to send, 1375 ms to get response, and 1384 ms overall
17-03-17 21:46:53.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:46:53.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169995360291231. ------
17-03-17 21:46:53.478 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:53.478 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17669 mm
17-03-17 21:46:53.478 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:53.478 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:46:53.478 -07 000000547 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:46:53.478 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38599, sync = True, waitForSettling = False)
17-03-17 21:46:53.478 -07 000000438 INF: Z Motor: Moving to -0.176695 mm, started at -0.169995 mm, distance = -6.70 um
17-03-17 21:46:53.478 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:53.488 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:46:53.488 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:53.488 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:46:53.498 -07 000000438 INF: FPGA: Xmit ZDACW 38599\n [Z Motor]
17-03-17 21:46:53.498 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:46:53.498 -07 000000547 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:53.498 -07 000000547 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:53.498 -07 000000547 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:46:53.498 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:46:53.508 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:46:53.508 -07 000000438 INF: FPGA: 'ZDACW 38599' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:46:53.518 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:53.528 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:53.528 -07 000000415 INF: FPGA: Recv ZDACR 38599
17-03-17 21:46:53.538 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:46:53.538 -07 000000438 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:46:53.548 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.009895,
17-03-17 21:46:53.658 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:46:53.658 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:46:53.658 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:53.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:46:53.668 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:46:53.668 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:53.668 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:46:53.668 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:53.668 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:46:53.668 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:46:53.708 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:46:53.708 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:46:53.888 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:46:53.888 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:46:53.928 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:53.938 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:46:53.938 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:46:53.938 -07 000000547 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:53.938 -07 000000547 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:46:53.938 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:46:54.888 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:54.888 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:46:54.898 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.898 -07 000000547 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:54.918 -07 000000547 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:54.918 -07 000000547 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:46:54.918 -07 000000547 INF: Y Motor: Moved to 67.3716 after 1438 ms (table move)
17-03-17 21:46:54.918 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176695 mm (DAC = 38599)
17-03-17 21:46:54.918 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.928 -07 000000626 INF: FPGA: Recv ZSGSRD 36806
17-03-17 21:46:54.928 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:46:54.928 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.928 -07 000000458 INF: FPGA: Recv ZSGSRD 36795
17-03-17 21:46:54.938 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:46:54.938 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.938 -07 000000608 INF: FPGA: Recv ZSGSRD 36796
17-03-17 21:46:54.948 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.948 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.948 -07 000000424 INF: FPGA: Recv ZSGSRD 36796
17-03-17 21:46:54.958 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.958 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.958 -07 000000512 INF: FPGA: Recv ZSGSRD 36795
17-03-17 21:46:54.968 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.968 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.968 -07 000000475 INF: FPGA: Recv ZSGSRD 36798
17-03-17 21:46:54.978 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.978 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36795
17-03-17 21:46:54.988 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.988 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.988 -07 000000459 INF: FPGA: Recv ZSGSRD 36791
17-03-17 21:46:54.998 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:54.998 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:54.998 -07 000000429 INF: FPGA: Recv ZSGSRD 36793
17-03-17 21:46:55.008 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:55.008 -07 000000547 INF: FPGA: Recv ZSGSRD 36795
17-03-17 21:46:55.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.018 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:55.018 -07 000000569 INF: FPGA: Recv ZPIEZORD 33181
17-03-17 21:46:55.028 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.028 -07 000000012 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.0 V.
17-03-17 21:46:55.028 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36796 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36795 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36791 (-175.8 uncal um), Max = 36806 (-175.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:46:55.028 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36796, posNoise = 10, negNoise = 5
17-03-17 21:46:55.028 -07 000000012 INF: Z Motor: After move to -0.176695, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:55.028 -07 000000012 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:46:55.028 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:55.078 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:46:55.078 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:55.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:55.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:55.078 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:55.078 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:46:55.078 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:55.078 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:55.078 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:55.078 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:46:55.088 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:46:55.088 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:46:55.098 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:46:55.098 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:46:55.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:46:55.138 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:46:55.338 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:46:55.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:46:55.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:46:55.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:46:55.378 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:46:55.378 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 21:46:55.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:46:55.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 21:46:55.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:55.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:46:55.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:46:55.578 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:46:55.578 -07 000000501 INF: Autofocus start
17-03-17 21:46:55.578 -07 000000501 INF: MeasureProfile start
17-03-17 21:46:55.578 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:46:55.588 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:46:55.588 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:46:55.588 -07 000000501 INF: MeasureProfile done
17-03-17 21:46:55.588 -07 000000501 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 21:46:55.588 -07 000000501 INF: Autofocus finished
17-03-17 21:46:55.788 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:46:55.788 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:46:55.788 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176708661979371. ----------
17-03-17 21:46:55.788 -07 000000610 INF: Cycle	55	Tile	10	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:55.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37042, sync = True, waitForSettling = True)
17-03-17 21:46:55.798 -07 000000610 INF: Z Motor: Moving to -0.169567 mm, started at -0.176709 mm, distance = 7.14 um
17-03-17 21:46:55.798 -07 000000610 INF: FPGA: Xmit ZDACW 37042\n [Z Motor]
17-03-17 21:46:55.798 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:46:55.808 -07 000000610 INF: FPGA: 'ZDACW 37042' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:55.808 -07 000000429 INF: FPGA: Recv ZDACR 37042
17-03-17 21:46:55.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:55.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:55.968 -07 000000512 INF: FPGA: Recv ZSGSRD 35684
17-03-17 21:46:55.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:55.978 -07 000000438 INF: FPGA: Recv ZSGSRD 35690
17-03-17 21:46:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:55.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35683
17-03-17 21:46:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:55.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35680
17-03-17 21:46:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:56.008 -07 000000626 INF: FPGA: Recv ZSGSRD 35690
17-03-17 21:46:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:56.018 -07 000000476 INF: FPGA: Recv ZSGSRD 35680
17-03-17 21:46:56.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:56.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:46:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:56.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35684
17-03-17 21:46:56.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:56.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:46:56.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:56.058 -07 000000431 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:46:56.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:56.068 -07 000000576 INF: FPGA: Recv ZPIEZORD 31697
17-03-17 21:46:56.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:56.078 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -8.8 V.
17-03-17 21:46:56.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35686 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35686 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35680 (-168.7 uncal um), Max = 35690 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:46:56.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35686, posNoise = 4, negNoise = 6
17-03-17 21:46:56.078 -07 000000610 INF: Z Motor: After move to -0.169567, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:56.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:46:56.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:56.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:56.078 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:56.078 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:56.078 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:56.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:56.078 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:56.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:56.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:46:56.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:56.078 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:46:56.078 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:56.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:56.078 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:56.088 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:46:56.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:56.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:46:56.098 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:46:56.098 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:46:56.098 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:46:56.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37218 150\n [Camera]
17-03-17 21:46:56.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:46:56.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:46:56.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:46:56.738 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:56.738 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:56.738 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:46:56.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:46:56.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:46:56.748 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:56.748 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:56.748 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:46:56.908 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:46:56.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:46:56.938 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37218 823
17-03-17 21:46:57.078 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:46:57.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:46:57.118 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:46:57.118 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:46:57.118 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:57.118 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:46:57.118 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:57.128 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:46:57.128 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:46:57.128 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:46:57.128 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:46:57.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:46:57.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:46:57.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:46:57.298 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:46:57.298 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 21:46:57.298 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:46:57.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:46:57.298 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:46:57.298 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:46:57.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:46:57.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:46:57.488 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:46:57.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37218 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall
17-03-17 21:46:57.488 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169906
17-03-17 21:46:57.488 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16991 mm
17-03-17 21:46:57.488 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:46:57.488 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:46:57.488 -07 000000480 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:46:57.488 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37116, sync = True, waitForSettling = False)
17-03-17 21:46:57.488 -07 000000415 INF: Z Motor: Moving to -0.169906 mm, started at -0.169578 mm, distance = -0.33 um
17-03-17 21:46:57.488 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:57.498 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:46:57.508 -07 000000415 INF: FPGA: Xmit ZDACW 37116\n [Z Motor]
17-03-17 21:46:57.508 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:57.508 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:57.508 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:46:57.508 -07 000000480 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:46:57.508 -07 000000480 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:46:57.518 -07 000000415 INF: FPGA: 'ZDACW 37116' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:46:57.518 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:57.518 -07 000000569 INF: FPGA: Recv ZDACR 37116
17-03-17 21:46:57.528 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:46:57.528 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:57.528 -07 000000415 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 21:46:57.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:46:57.678 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:46:57.678 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:57.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:46:57.688 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:46:57.688 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:46:57.688 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:46:57.688 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:46:57.688 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:46:57.698 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:46:57.898 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:46:57.898 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:46:57.948 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:57.948 -07 000000512 INF: FPGA: Recv YRDPOS 139682
17-03-17 21:46:57.958 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:57.958 -07 000000480 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:57.958 -07 000000480 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:46:57.958 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-17 21:46:58.918 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.98264,
17-03-17 21:46:58.928 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:46:58.928 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:46:58.938 -07 000000480 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:46:58.938 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:46:58.958 -07 000000480 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:46:58.958 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:46:58.958 -07 000000480 INF: Y Motor: Moved to 68.2046 after 1465 ms (table move)
17-03-17 21:46:58.958 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169906 mm (DAC = 37116)
17-03-17 21:46:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:58.968 -07 000000424 INF: FPGA: Recv ZSGSRD 35743
17-03-17 21:46:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:46:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:58.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35738
17-03-17 21:46:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:46:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:58.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35732
17-03-17 21:46:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.008 -07 000000012 INF: FPGA: Recv ZSGSRD 35733
17-03-17 21:46:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35740
17-03-17 21:46:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.028 -07 000000627 INF: FPGA: Recv ZSGSRD 35738
17-03-17 21:46:59.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.038 -07 000000476 INF: FPGA: Recv ZSGSRD 35742
17-03-17 21:46:59.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.048 -07 000000608 INF: FPGA: Recv ZSGSRD 35745
17-03-17 21:46:59.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.058 -07 000000459 INF: FPGA: Recv ZSGSRD 35739
17-03-17 21:46:59.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35737
17-03-17 21:46:59.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:59.078 -07 000000431 INF: FPGA: Recv ZPIEZORD 31822
17-03-17 21:46:59.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.088 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -8.7 V.
17-03-17 21:46:59.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35739 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35732 (-169.0 uncal um), Max = 35745 (-169.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:46:59.088 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35739, posNoise = 6, negNoise = 7
17-03-17 21:46:59.088 -07 000000610 INF: Z Motor: After move to -0.169906, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:59.088 -07 000000610 INF: Z Motor: Settle wait time = 1467 ms, measure time = 123 ms (allowed 150 ms), total time = 1590 ms
17-03-17 21:46:59.088 -07 000000610 INF: Z Motor: Waiting extra 27 ms after reading position to reach expected total of 150 ms
17-03-17 21:46:59.118 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-17 21:46:59.118 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:46:59.118 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.16991826974553. ----------
17-03-17 21:46:59.118 -07 000000610 INF: Cycle	55	Tile	11	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:46:59.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36939, sync = True, waitForSettling = True)
17-03-17 21:46:59.118 -07 000000610 INF: Z Motor: Moving to -0.169096 mm, started at -0.169918 mm, distance = 0.82 um
17-03-17 21:46:59.118 -07 000000610 INF: FPGA: Xmit ZDACW 36939\n [Z Motor]
17-03-17 21:46:59.118 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:46:59.128 -07 000000610 INF: FPGA: 'ZDACW 36939' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:46:59.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:46:59.128 -07 000000627 INF: FPGA: Recv ZDACR 36939
17-03-17 21:46:59.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:46:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.288 -07 000000480 INF: FPGA: Recv ZSGSRD 35617
17-03-17 21:46:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:46:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35614
17-03-17 21:46:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.308 -07 000000626 INF: FPGA: Recv ZSGSRD 35606
17-03-17 21:46:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.318 -07 000000476 INF: FPGA: Recv ZSGSRD 35619
17-03-17 21:46:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.328 -07 000000627 INF: FPGA: Recv ZSGSRD 35616
17-03-17 21:46:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.338 -07 000000012 INF: FPGA: Recv ZSGSRD 35611
17-03-17 21:46:59.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35612
17-03-17 21:46:59.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35614
17-03-17 21:46:59.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.368 -07 000000382 INF: FPGA: Recv ZSGSRD 35621
17-03-17 21:46:59.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:46:59.378 -07 000000429 INF: FPGA: Recv ZSGSRD 35606
17-03-17 21:46:59.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:46:59.388 -07 000000608 INF: FPGA: Recv ZPIEZORD 31651
17-03-17 21:46:59.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:46:59.398 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -8.8 V.
17-03-17 21:46:59.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35614 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35614 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35606 (-168.2 uncal um), Max = 35621 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:46:59.398 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35614, posNoise = 7, negNoise = 8
17-03-17 21:46:59.398 -07 000000610 INF: Z Motor: After move to -0.169096, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:46:59.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:46:59.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:46:59.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:46:59.398 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:46:59.398 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:46:59.398 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:46:59.398 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:46:59.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:46:59.398 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:46:59.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:46:59.398 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:46:59.398 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:46:59.398 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:46:59.398 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:46:59.408 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:46:59.408 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:46:59.408 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:46:59.408 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:46:59.408 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:46:59.418 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:46:59.418 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:46:59.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37116 150\n [Camera]
17-03-17 21:46:59.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 21:47:00.058 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:00.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:00.058 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:00.058 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:00.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:47:00.058 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:00.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:00.058 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:00.058 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:00.058 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:47:00.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37116 823
17-03-17 21:47:00.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:00.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:47:00.428 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:47:00.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:00.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:47:00.438 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:47:00.438 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:00.438 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:00.438 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:00.438 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:47:00.448 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:47:00.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:00.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:00.608 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:00.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:00.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:00.748 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:00.748 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:00.748 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:47:00.748 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:00.748 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:47:00.798 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:00.798 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:00.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37116 150' command took 2 ms to send, 1378 ms to get response, and 1385 ms overall
17-03-17 21:47:00.808 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169698
17-03-17 21:47:00.808 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16970 mm
17-03-17 21:47:00.808 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:00.808 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37070, sync = True, waitForSettling = False)
17-03-17 21:47:00.808 -07 000000438 INF: Z Motor: Moving to -0.169696 mm, started at -0.169115 mm, distance = -0.58 um
17-03-17 21:47:00.808 -07 000000438 INF: FPGA: Xmit ZDACW 37070\n [Z Motor]
17-03-17 21:47:00.808 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:47:00.808 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:47:00.808 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:47:00.818 -07 000000438 INF: FPGA: 'ZDACW 37070' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:00.818 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:00.818 -07 000000512 INF: FPGA: Recv ZDACR 37070
17-03-17 21:47:00.828 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:00.828 -07 000000438 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 21:47:00.828 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:00.828 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:47:00.838 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:47:00.838 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:00.838 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:00.838 -07 000000576 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:47:00.838 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:01.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:47:01.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:47:01.128 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:01.128 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:01.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:47:01.128 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:47:01.128 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:01.128 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:01.128 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 21:47:01.138 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:47:01.208 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:47:01.208 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 21:47:01.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:01.258 -07 000000569 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:47:01.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:01.258 -07 000000576 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:01.258 -07 000000576 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:47:01.258 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-17 21:47:01.908 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:01.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:02.208 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:02.208 -07 000000512 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:47:02.218 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.218 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:02.238 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:02.238 -07 000000576 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:47:02.238 -07 000000576 INF: Y Motor: Moved to 69.0269 after 1428 ms (table move)
17-03-17 21:47:02.238 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169696 mm (DAC = 37070)
17-03-17 21:47:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.238 -07 000000476 INF: FPGA: Recv ZSGSRD 35700
17-03-17 21:47:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.248 -07 000000569 INF: FPGA: Recv ZSGSRD 35708
17-03-17 21:47:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35706
17-03-17 21:47:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.268 -07 000000512 INF: FPGA: Recv ZSGSRD 35708
17-03-17 21:47:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.278 -07 000000012 INF: FPGA: Recv ZSGSRD 35709
17-03-17 21:47:02.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.288 -07 000000547 INF: FPGA: Recv ZSGSRD 35702
17-03-17 21:47:02.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.298 -07 000000429 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:47:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.308 -07 000000431 INF: FPGA: Recv ZSGSRD 35700
17-03-17 21:47:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.318 -07 000000626 INF: FPGA: Recv ZSGSRD 35704
17-03-17 21:47:02.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.328 -07 000000627 INF: FPGA: Recv ZSGSRD 35707
17-03-17 21:47:02.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:02.338 -07 000000382 INF: FPGA: Recv ZPIEZORD 31794
17-03-17 21:47:02.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.348 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -8.6 V.
17-03-17 21:47:02.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35705 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35705 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35700 (-168.8 uncal um), Max = 35709 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:47:02.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35705, posNoise = 4, negNoise = 5
17-03-17 21:47:02.348 -07 000000610 INF: Z Motor: After move to -0.169696, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:02.348 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:47:02.348 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:02.398 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 21:47:02.398 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:02.398 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.16969984653271. ----------
17-03-17 21:47:02.398 -07 000000610 INF: Cycle	55	Tile	12	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:02.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36894, sync = True, waitForSettling = True)
17-03-17 21:47:02.398 -07 000000610 INF: Z Motor: Moving to -0.168890 mm, started at -0.169700 mm, distance = 0.81 um
17-03-17 21:47:02.398 -07 000000610 INF: FPGA: Xmit ZDACW 36894\n [Z Motor]
17-03-17 21:47:02.398 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:47:02.408 -07 000000610 INF: FPGA: 'ZDACW 36894' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:02.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:02.408 -07 000000547 INF: FPGA: Recv ZDACR 36894
17-03-17 21:47:02.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:02.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.568 -07 000000415 INF: FPGA: Recv ZSGSRD 35587
17-03-17 21:47:02.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.578 -07 000000627 INF: FPGA: Recv ZSGSRD 35582
17-03-17 21:47:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.588 -07 000000480 INF: FPGA: Recv ZSGSRD 35577
17-03-17 21:47:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.598 -07 000000501 INF: FPGA: Recv ZSGSRD 35581
17-03-17 21:47:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.608 -07 000000458 INF: FPGA: Recv ZSGSRD 35581
17-03-17 21:47:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.618 -07 000000424 INF: FPGA: Recv ZSGSRD 35575
17-03-17 21:47:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.628 -07 000000569 INF: FPGA: Recv ZSGSRD 35579
17-03-17 21:47:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.638 -07 000000608 INF: FPGA: Recv ZSGSRD 35582
17-03-17 21:47:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.648 -07 000000627 INF: FPGA: Recv ZSGSRD 35586
17-03-17 21:47:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:02.658 -07 000000512 INF: FPGA: Recv ZSGSRD 35583
17-03-17 21:47:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:02.668 -07 000000569 INF: FPGA: Recv ZPIEZORD 31598
17-03-17 21:47:02.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:02.678 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -8.8 V.
17-03-17 21:47:02.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35581 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35582 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35575 (-168.0 uncal um), Max = 35587 (-168.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:47:02.678 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35581, posNoise = 6, negNoise = 6
17-03-17 21:47:02.678 -07 000000610 INF: Z Motor: After move to -0.168890, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:02.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:47:02.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:02.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:02.678 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:02.678 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:02.678 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:02.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:02.678 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:02.678 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:02.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:02.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:02.678 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:02.678 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:02.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:02.678 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:02.688 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:02.688 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:02.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 21:47:02.698 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:47:02.698 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:47:02.698 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:47:02.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 37070 150\n [Camera]
17-03-17 21:47:02.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:03.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:03.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:03.338 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:03.338 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:03.338 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:47:03.338 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:03.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:03.338 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:03.338 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:03.338 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:47:03.528 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37070 823
17-03-17 21:47:03.678 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:03.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:47:03.718 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:47:03.718 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:03.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:03.718 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:03.718 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:03.718 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:03.718 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:03.718 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:47:03.728 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:47:03.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:03.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:03.888 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:03.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:03.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:03.998 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:04.008 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:04.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:47:04.008 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:04.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:47:04.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:47:04.078 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:04.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 37070 150' command took 2 ms to send, 1379 ms to get response, and 1383 ms overall
17-03-17 21:47:04.088 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169222
17-03-17 21:47:04.088 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16922 mm
17-03-17 21:47:04.088 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:04.088 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:47:04.088 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:47:04.088 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:04.088 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 36967, sync = True, waitForSettling = False)
17-03-17 21:47:04.088 -07 000000480 INF: Z Motor: Moving to -0.169224 mm, started at -0.168903 mm, distance = -0.32 um
17-03-17 21:47:04.088 -07 000000501 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:47:04.098 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:04.098 -07 000000627 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:04.098 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:04.098 -07 000000627 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:47:04.098 -07 000000480 INF: FPGA: Xmit ZDACW 36967\n [Z Motor]
17-03-17 21:47:04.098 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:47:04.108 -07 000000480 INF: FPGA: 'ZDACW 36967' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:47:04.108 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:04.108 -07 000000382 INF: FPGA: Recv ZDACR 36967
17-03-17 21:47:04.118 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:04.118 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:04.118 -07 000000480 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:47:04.318 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.999021,
17-03-17 21:47:04.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:47:04.388 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:47:04.388 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:04.388 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:04.388 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:04.388 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:04.388 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:47:04.388 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:04.388 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 21:47:04.398 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:47:04.488 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:47:04.488 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 21:47:04.528 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:04.538 -07 000000424 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:47:04.538 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:47:04.538 -07 000000627 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:04.538 -07 000000627 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:47:04.538 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.120 mm/sec
17-03-17 21:47:05.488 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:05.488 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:47:05.498 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:05.498 -07 000000627 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:05.518 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:05.518 -07 000000627 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:47:05.518 -07 000000627 INF: Y Motor: Moved to 69.8628 after 1428 ms (table move)
17-03-17 21:47:05.518 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169224 mm (DAC = 36967)
17-03-17 21:47:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.528 -07 000000547 INF: FPGA: Recv ZSGSRD 35634
17-03-17 21:47:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 21:47:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:47:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35632
17-03-17 21:47:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.548 -07 000000382 INF: FPGA: Recv ZSGSRD 35636
17-03-17 21:47:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.558 -07 000000438 INF: FPGA: Recv ZSGSRD 35635
17-03-17 21:47:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.568 -07 000000431 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:47:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.578 -07 000000458 INF: FPGA: Recv ZSGSRD 35630
17-03-17 21:47:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.588 -07 000000459 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:47:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.598 -07 000000475 INF: FPGA: Recv ZSGSRD 35638
17-03-17 21:47:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.608 -07 000000415 INF: FPGA: Recv ZSGSRD 35638
17-03-17 21:47:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:05.618 -07 000000576 INF: FPGA: Recv ZPIEZORD 31699
17-03-17 21:47:05.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.628 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -8.7 V.
17-03-17 21:47:05.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35633 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35633 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35626 (-168.3 uncal um), Max = 35638 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:47:05.628 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35633, posNoise = 5, negNoise = 7
17-03-17 21:47:05.628 -07 000000610 INF: Z Motor: After move to -0.169224, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:05.628 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:47:05.628 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:05.678 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 21:47:05.678 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:05.678 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.169237303258503. ----------
17-03-17 21:47:05.678 -07 000000610 INF: Cycle	55	Tile	13	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:05.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36790, sync = True, waitForSettling = True)
17-03-17 21:47:05.678 -07 000000610 INF: Z Motor: Moving to -0.168414 mm, started at -0.169237 mm, distance = 0.82 um
17-03-17 21:47:05.678 -07 000000610 INF: FPGA: Xmit ZDACW 36790\n [Z Motor]
17-03-17 21:47:05.678 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:47:05.688 -07 000000610 INF: FPGA: 'ZDACW 36790' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:05.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:05.688 -07 000000431 INF: FPGA: Recv ZDACR 36790
17-03-17 21:47:05.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.848 -07 000000512 INF: FPGA: Recv ZSGSRD 35508
17-03-17 21:47:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.858 -07 000000458 INF: FPGA: Recv ZSGSRD 35507
17-03-17 21:47:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.868 -07 000000608 INF: FPGA: Recv ZSGSRD 35505
17-03-17 21:47:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35511
17-03-17 21:47:05.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.888 -07 000000480 INF: FPGA: Recv ZSGSRD 35501
17-03-17 21:47:05.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.898 -07 000000576 INF: FPGA: Recv ZSGSRD 35501
17-03-17 21:47:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.908 -07 000000438 INF: FPGA: Recv ZSGSRD 35507
17-03-17 21:47:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35503
17-03-17 21:47:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35506
17-03-17 21:47:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:05.938 -07 000000415 INF: FPGA: Recv ZSGSRD 35510
17-03-17 21:47:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:05.948 -07 000000576 INF: FPGA: Recv ZPIEZORD 31520
17-03-17 21:47:05.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:05.958 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -8.8 V.
17-03-17 21:47:05.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35506 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35506 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35501 (-167.5 uncal um), Max = 35511 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:47:05.958 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35506, posNoise = 5, negNoise = 5
17-03-17 21:47:05.958 -07 000000610 INF: Z Motor: After move to -0.168414, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:05.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:47:05.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:05.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:05.958 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:05.958 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:05.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:05.958 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:05.958 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:05.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:05.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:05.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:05.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:05.958 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:05.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:05.958 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:05.968 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:47:05.968 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:05.978 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 21:47:05.978 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:47:05.978 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:47:05.978 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:05.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36967 150\n [Camera]
17-03-17 21:47:06.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:06.618 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:06.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:06.618 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:06.618 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:06.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:47:06.628 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:06.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:06.628 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:06.628 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:06.628 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:47:06.808 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36967 823
17-03-17 21:47:06.908 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:06.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:06.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:06.998 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:47:06.998 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:47:06.998 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:06.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:47:06.998 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:47:06.998 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:07.008 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:07.008 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:47:07.008 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:07.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:47:07.178 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:07.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:07.178 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:07.178 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:07.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:47:07.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:07.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:07.178 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:07.178 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:07.178 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:47:07.368 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:47:07.368 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:07.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36967 150' command took 2 ms to send, 1372 ms to get response, and 1383 ms overall
17-03-17 21:47:07.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:47:07.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.1684214283165. ------
17-03-17 21:47:07.368 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:07.368 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17486 mm
17-03-17 21:47:07.368 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:07.378 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:07.378 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:47:07.378 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:47:07.378 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:47:07.378 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:07.378 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38198, sync = True, waitForSettling = False)
17-03-17 21:47:07.378 -07 000000480 INF: Z Motor: Moving to -0.174859 mm, started at -0.168421 mm, distance = -6.44 um
17-03-17 21:47:07.378 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:47:07.388 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:07.388 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:47:07.388 -07 000000627 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:07.388 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:07.388 -07 000000627 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:47:07.398 -07 000000480 INF: FPGA: Xmit ZDACW 38198\n [Z Motor]
17-03-17 21:47:07.398 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:47:07.408 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:07.408 -07 000000480 INF: FPGA: 'ZDACW 38198' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:47:07.418 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:07.418 -07 000000547 INF: FPGA: Recv ZDACR 38198
17-03-17 21:47:07.428 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:07.428 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:47:07.558 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:47:07.558 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:47:07.558 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:07.558 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:07.558 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:47:07.558 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:07.558 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:07.558 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:47:07.558 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:07.568 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:47:07.588 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:47:07.588 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 21:47:07.778 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:47:07.778 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:47:07.818 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:07.828 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:47:07.828 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:47:07.828 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:07.828 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:47:07.828 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 21:47:08.778 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:08.778 -07 000000431 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:47:08.788 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:08.788 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:08.808 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:08.808 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:08.808 -07 000000627 INF: Y Motor: Moved to 70.6880 after 1433 ms (table move)
17-03-17 21:47:08.808 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174859 mm (DAC = 38198)
17-03-17 21:47:08.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.818 -07 000000458 INF: FPGA: Recv ZSGSRD 36514
17-03-17 21:47:08.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:47:08.818 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.818 -07 000000438 INF: FPGA: Recv ZSGSRD 36512
17-03-17 21:47:08.828 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.828 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.828 -07 000000459 INF: FPGA: Recv ZSGSRD 36513
17-03-17 21:47:08.838 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.838 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.838 -07 000000429 INF: FPGA: Recv ZSGSRD 36508
17-03-17 21:47:08.848 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.848 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36518
17-03-17 21:47:08.858 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.858 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.858 -07 000000476 INF: FPGA: Recv ZSGSRD 36513
17-03-17 21:47:08.868 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.868 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.868 -07 000000512 INF: FPGA: Recv ZSGSRD 36505
17-03-17 21:47:08.878 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.878 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.878 -07 000000459 INF: FPGA: Recv ZSGSRD 36507
17-03-17 21:47:08.888 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.888 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.888 -07 000000458 INF: FPGA: Recv ZSGSRD 36501
17-03-17 21:47:08.898 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.898 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:08.898 -07 000000012 INF: FPGA: Recv ZSGSRD 36512
17-03-17 21:47:08.908 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.908 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:08.908 -07 000000476 INF: FPGA: Recv ZPIEZORD 32840
17-03-17 21:47:08.918 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:08.918 -07 000000576 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.1 V.
17-03-17 21:47:08.918 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36510 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36501 (-173.9 uncal um), Max = 36518 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:47:08.918 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36510, posNoise = 8, negNoise = 9
17-03-17 21:47:08.918 -07 000000576 INF: Z Motor: After move to -0.174859, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:08.918 -07 000000576 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:47:08.918 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:08.968 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:47:08.968 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:08.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:08.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:08.968 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:08.968 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:08.968 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:47:08.968 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:08.968 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:08.968 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:47:08.978 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:08.978 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:47:08.988 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:47:08.988 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:47:08.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:47:09.038 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:47:09.238 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:47:09.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:47:09.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:47:09.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:47:09.278 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:47:09.278 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:47:09.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:47:09.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 21:47:09.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:09.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:47:09.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:47:09.378 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:09.378 -07 000000627 INF: Autofocus start
17-03-17 21:47:09.378 -07 000000627 INF: MeasureProfile start
17-03-17 21:47:09.378 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:09.388 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:47:09.388 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:47:09.388 -07 000000627 INF: MeasureProfile done
17-03-17 21:47:09.388 -07 000000627 INF: X=64  Z correction [um]=0.2557664
17-03-17 21:47:09.388 -07 000000627 INF: Autofocus finished
17-03-17 21:47:09.588 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:47:09.588 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:47:09.588 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174871337306828. ----------
17-03-17 21:47:09.588 -07 000000610 INF: Cycle	55	Tile	14	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:09.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36767, sync = True, waitForSettling = True)
17-03-17 21:47:09.598 -07 000000610 INF: Z Motor: Moving to -0.168309 mm, started at -0.174871 mm, distance = 6.56 um
17-03-17 21:47:09.598 -07 000000610 INF: FPGA: Xmit ZDACW 36767\n [Z Motor]
17-03-17 21:47:09.598 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:47:09.608 -07 000000610 INF: FPGA: 'ZDACW 36767' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:09.608 -07 000000476 INF: FPGA: Recv ZDACR 36767
17-03-17 21:47:09.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:09.678 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.014009,
17-03-17 21:47:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.768 -07 000000415 INF: FPGA: Recv ZSGSRD 35495
17-03-17 21:47:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.778 -07 000000475 INF: FPGA: Recv ZSGSRD 35492
17-03-17 21:47:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.788 -07 000000382 INF: FPGA: Recv ZSGSRD 35492
17-03-17 21:47:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.798 -07 000000626 INF: FPGA: Recv ZSGSRD 35491
17-03-17 21:47:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.808 -07 000000459 INF: FPGA: Recv ZSGSRD 35492
17-03-17 21:47:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.818 -07 000000627 INF: FPGA: Recv ZSGSRD 35487
17-03-17 21:47:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.828 -07 000000429 INF: FPGA: Recv ZSGSRD 35487
17-03-17 21:47:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.838 -07 000000512 INF: FPGA: Recv ZSGSRD 35492
17-03-17 21:47:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.848 -07 000000438 INF: FPGA: Recv ZSGSRD 35491
17-03-17 21:47:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:09.858 -07 000000382 INF: FPGA: Recv ZSGSRD 35494
17-03-17 21:47:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:09.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:09.868 -07 000000438 INF: FPGA: Recv ZPIEZORD 31493
17-03-17 21:47:09.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:09.878 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -8.8 V.
17-03-17 21:47:09.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35491 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35492 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35487 (-167.4 uncal um), Max = 35495 (-167.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:47:09.878 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35491, posNoise = 4, negNoise = 4
17-03-17 21:47:09.878 -07 000000610 INF: Z Motor: After move to -0.168309, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:09.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:47:09.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:09.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:09.878 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:09.878 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:09.878 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:09.878 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:09.878 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:09.878 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:09.878 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:09.878 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:09.878 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:09.878 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:09.888 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:47:09.888 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:09.888 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:47:09.888 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:09.898 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:47:09.898 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:47:09.898 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:47:09.898 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:47:09.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36943 150\n [Camera]
17-03-17 21:47:10.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:10.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:10.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:10.548 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:10.548 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:10.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:47:10.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:10.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:10.548 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:10.678 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:10.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:47:10.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36943 823
17-03-17 21:47:10.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:10.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:47:10.928 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:47:10.928 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:10.938 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:10.938 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:47:11.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:47:11.048 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:47:11.048 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:11.048 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:11.058 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 21:47:11.098 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:11.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:11.098 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:11.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:11.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:11.108 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:11.108 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:11.108 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:47:11.118 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:11.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:47:11.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:11.288 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:11.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36943 150' command took 2 ms to send, 1378 ms to get response, and 1384 ms overall
17-03-17 21:47:11.298 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168653
17-03-17 21:47:11.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16865 mm
17-03-17 21:47:11.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:11.298 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36842, sync = True, waitForSettling = False)
17-03-17 21:47:11.298 -07 000000382 INF: Z Motor: Moving to -0.168652 mm, started at -0.168325 mm, distance = -0.33 um
17-03-17 21:47:11.298 -07 000000382 INF: FPGA: Xmit ZDACW 36842\n [Z Motor]
17-03-17 21:47:11.298 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:47:11.298 -07 000000576 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:47:11.298 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:47:11.308 -07 000000382 INF: FPGA: 'ZDACW 36842' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:11.308 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:11.308 -07 000000512 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:47:11.318 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:47:11.318 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:11.318 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:11.318 -07 000000576 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:11.318 -07 000000576 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:47:11.318 -07 000000012 INF: FPGA: Recv ZDACR 36842
17-03-17 21:47:11.328 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:11.328 -07 000000382 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 21:47:11.328 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:11.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:47:11.488 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:47:11.488 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:11.488 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:11.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:47:11.488 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:47:11.488 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:11.498 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:47:11.498 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:47:11.498 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:47:11.698 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:47:11.698 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:47:11.738 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:11.738 -07 000000512 INF: FPGA: Recv YRDPOS 146469
17-03-17 21:47:11.748 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:11.748 -07 000000576 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:11.748 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:47:11.748 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec
17-03-17 21:47:11.908 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:11.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:12.698 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:12.698 -07 000000415 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:47:12.708 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:12.708 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:12.728 -07 000000576 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:12.728 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:47:12.728 -07 000000576 INF: Y Motor: Moved to 71.5186 after 1429 ms (table move)
17-03-17 21:47:12.728 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168652 mm (DAC = 36842)
17-03-17 21:47:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.738 -07 000000475 INF: FPGA: Recv ZSGSRD 35547
17-03-17 21:47:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:47:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.738 -07 000000608 INF: FPGA: Recv ZSGSRD 35541
17-03-17 21:47:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.748 -07 000000459 INF: FPGA: Recv ZSGSRD 35543
17-03-17 21:47:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.758 -07 000000627 INF: FPGA: Recv ZSGSRD 35545
17-03-17 21:47:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35544
17-03-17 21:47:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.778 -07 000000547 INF: FPGA: Recv ZSGSRD 35545
17-03-17 21:47:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.788 -07 000000608 INF: FPGA: Recv ZSGSRD 35537
17-03-17 21:47:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.798 -07 000000476 INF: FPGA: Recv ZSGSRD 35541
17-03-17 21:47:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35533
17-03-17 21:47:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:12.818 -07 000000576 INF: FPGA: Recv ZSGSRD 35542
17-03-17 21:47:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:12.828 -07 000000475 INF: FPGA: Recv ZPIEZORD 31542
17-03-17 21:47:12.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.838 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.8 V.
17-03-17 21:47:12.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35542 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35533 (-167.7 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:47:12.838 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35542, posNoise = 5, negNoise = 9
17-03-17 21:47:12.838 -07 000000610 INF: Z Motor: After move to -0.168652, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:12.838 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:47:12.838 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:12.888 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 21:47:12.888 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:12.888 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.168652699953603. ----------
17-03-17 21:47:12.888 -07 000000610 INF: Cycle	55	Tile	15	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:12.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36665, sync = True, waitForSettling = True)
17-03-17 21:47:12.888 -07 000000610 INF: Z Motor: Moving to -0.167842 mm, started at -0.168653 mm, distance = 0.81 um
17-03-17 21:47:12.888 -07 000000610 INF: FPGA: Xmit ZDACW 36665\n [Z Motor]
17-03-17 21:47:12.888 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:47:12.898 -07 000000610 INF: FPGA: 'ZDACW 36665' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:12.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:12.898 -07 000000476 INF: FPGA: Recv ZDACR 36665
17-03-17 21:47:12.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:12.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.058 -07 000000012 INF: FPGA: Recv ZSGSRD 35421
17-03-17 21:47:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:13.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.068 -07 000000626 INF: FPGA: Recv ZSGSRD 35420
17-03-17 21:47:13.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.078 -07 000000424 INF: FPGA: Recv ZSGSRD 35421
17-03-17 21:47:13.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.088 -07 000000429 INF: FPGA: Recv ZSGSRD 35416
17-03-17 21:47:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35413
17-03-17 21:47:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.108 -07 000000547 INF: FPGA: Recv ZSGSRD 35420
17-03-17 21:47:13.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.118 -07 000000576 INF: FPGA: Recv ZSGSRD 35420
17-03-17 21:47:13.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.128 -07 000000480 INF: FPGA: Recv ZSGSRD 35412
17-03-17 21:47:13.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35415
17-03-17 21:47:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:13.148 -07 000000476 INF: FPGA: Recv ZSGSRD 35422
17-03-17 21:47:13.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:13.158 -07 000000012 INF: FPGA: Recv ZPIEZORD 31413
17-03-17 21:47:13.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:13.168 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.595 V. Piezo Error = -8.8 V.
17-03-17 21:47:13.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35418 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35420 (-167.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35412 (-166.9 uncal um), Max = 35422 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:47:13.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35418, posNoise = 4, negNoise = 6
17-03-17 21:47:13.168 -07 000000610 INF: Z Motor: After move to -0.167842, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:13.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:47:13.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:13.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:13.168 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:13.168 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:13.168 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:13.168 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:13.168 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:13.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:13.168 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:13.168 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:13.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:13.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:13.178 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:47:13.178 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:13.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:13.178 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:13.188 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:47:13.188 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:47:13.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:47:13.188 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:13.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36842 150\n [Camera]
17-03-17 21:47:13.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:13.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:13.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:13.828 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:13.828 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:13.828 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 21:47:13.838 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:13.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:13.838 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:13.838 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:13.838 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:47:14.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36842 823
17-03-17 21:47:14.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:14.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:47:14.218 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:47:14.218 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:14.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:47:14.218 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:47:14.218 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:14.218 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:14.228 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:14.228 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:47:14.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:47:14.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:14.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:14.388 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:14.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:14.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:14.388 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:14.388 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:14.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:47:14.388 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:14.388 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:47:14.578 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:14.578 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:14.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36842 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall
17-03-17 21:47:14.578 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.168095
17-03-17 21:47:14.578 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16809 mm
17-03-17 21:47:14.578 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:14.578 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:47:14.578 -07 000000459 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:47:14.578 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36720, sync = True, waitForSettling = False)
17-03-17 21:47:14.578 -07 000000476 INF: Z Motor: Moving to -0.168093 mm, started at -0.167856 mm, distance = -0.24 um
17-03-17 21:47:14.578 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:14.588 -07 000000458 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:47:14.598 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:14.598 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:14.598 -07 000000459 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:14.598 -07 000000476 INF: FPGA: Xmit ZDACW 36720\n [Z Motor]
17-03-17 21:47:14.598 -07 000000459 INF: Y Motor: Moving 1350 steps-30
17-03-17 21:47:14.598 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:47:14.608 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:14.608 -07 000000476 INF: FPGA: 'ZDACW 36720' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:47:14.618 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:14.618 -07 000000501 INF: FPGA: Recv ZDACR 36720
17-03-17 21:47:14.628 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:14.628 -07 000000476 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:47:14.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:14.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:47:14.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:14.768 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:47:14.768 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:47:14.768 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:14.778 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:14.778 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:47:14.778 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:14.778 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:47:14.978 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:47:14.978 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:47:15.018 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:15.028 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:47:15.028 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:47:15.028 -07 000000459 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:15.028 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:47:15.028 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.192 mm/sec
17-03-17 21:47:15.048 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.999021,
17-03-17 21:47:15.978 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:15.978 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:47:15.988 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:15.988 -07 000000459 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:16.008 -07 000000459 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:16.008 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:16.008 -07 000000459 INF: Y Motor: Moved to 72.3491 after 1425 ms (table move)
17-03-17 21:47:16.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168093 mm (DAC = 36720)
17-03-17 21:47:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.008 -07 000000626 INF: FPGA: Recv ZSGSRD 35454
17-03-17 21:47:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.018 -07 000000458 INF: FPGA: Recv ZSGSRD 35450
17-03-17 21:47:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.028 -07 000000382 INF: FPGA: Recv ZSGSRD 35457
17-03-17 21:47:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.038 -07 000000431 INF: FPGA: Recv ZSGSRD 35459
17-03-17 21:47:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.048 -07 000000476 INF: FPGA: Recv ZSGSRD 35457
17-03-17 21:47:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.058 -07 000000501 INF: FPGA: Recv ZSGSRD 35459
17-03-17 21:47:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.068 -07 000000458 INF: FPGA: Recv ZSGSRD 35452
17-03-17 21:47:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.078 -07 000000429 INF: FPGA: Recv ZSGSRD 35454
17-03-17 21:47:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35453
17-03-17 21:47:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.098 -07 000000569 INF: FPGA: Recv ZSGSRD 35461
17-03-17 21:47:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:16.108 -07 000000512 INF: FPGA: Recv ZPIEZORD 31475
17-03-17 21:47:16.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.118 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -8.8 V.
17-03-17 21:47:16.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35456 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35456 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35450 (-167.2 uncal um), Max = 35461 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:47:16.118 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35456, posNoise = 5, negNoise = 6
17-03-17 21:47:16.118 -07 000000610 INF: Z Motor: After move to -0.168093, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:16.118 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 105 ms (allowed 150 ms), total time = 1532 ms
17-03-17 21:47:16.118 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:16.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:47:16.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:16.168 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.168100217709411. ----------
17-03-17 21:47:16.168 -07 000000610 INF: Cycle	55	Tile	16	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:16.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36544, sync = True, waitForSettling = True)
17-03-17 21:47:16.168 -07 000000610 INF: Z Motor: Moving to -0.167288 mm, started at -0.168100 mm, distance = 0.81 um
17-03-17 21:47:16.168 -07 000000610 INF: FPGA: Xmit ZDACW 36544\n [Z Motor]
17-03-17 21:47:16.168 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:47:16.178 -07 000000610 INF: FPGA: 'ZDACW 36544' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:16.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:16.178 -07 000000429 INF: FPGA: Recv ZDACR 36544
17-03-17 21:47:16.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35332
17-03-17 21:47:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35330
17-03-17 21:47:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.358 -07 000000608 INF: FPGA: Recv ZSGSRD 35333
17-03-17 21:47:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.368 -07 000000431 INF: FPGA: Recv ZSGSRD 35331
17-03-17 21:47:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.378 -07 000000480 INF: FPGA: Recv ZSGSRD 35332
17-03-17 21:47:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.388 -07 000000627 INF: FPGA: Recv ZSGSRD 35332
17-03-17 21:47:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.398 -07 000000459 INF: FPGA: Recv ZSGSRD 35332
17-03-17 21:47:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.408 -07 000000512 INF: FPGA: Recv ZSGSRD 35330
17-03-17 21:47:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35334
17-03-17 21:47:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:16.428 -07 000000476 INF: FPGA: Recv ZSGSRD 35330
17-03-17 21:47:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:16.438 -07 000000626 INF: FPGA: Recv ZPIEZORD 31296
17-03-17 21:47:16.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:16.448 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -8.9 V.
17-03-17 21:47:16.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35332 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35332 (-166.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35330 (-166.4 uncal um), Max = 35334 (-166.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:47:16.448 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35332, posNoise = 2, negNoise = 2
17-03-17 21:47:16.448 -07 000000610 INF: Z Motor: After move to -0.167288, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:16.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:47:16.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:16.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:16.448 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:16.448 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:16.448 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:16.448 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:16.448 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:16.448 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:16.448 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:16.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:16.448 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:16.448 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:16.458 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:16.458 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:16.458 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:47:16.458 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:16.468 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:47:16.468 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:47:16.468 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:47:16.468 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:47:16.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36720 150\n [Camera]
17-03-17 21:47:16.678 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:16.908 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:16.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:17.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:17.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:17.108 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:17.108 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:17.108 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:47:17.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:17.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:17.118 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:17.118 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:17.118 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:47:17.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36720 823
17-03-17 21:47:17.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:17.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:47:17.508 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:47:17.508 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:17.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:47:17.518 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:47:17.518 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:17.518 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:17.518 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:47:17.518 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:17.528 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:47:17.668 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:17.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:17.668 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:17.668 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:17.668 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:47:17.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:17.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:17.668 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:17.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:17.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:47:17.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:47:17.858 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:17.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36720 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-17 21:47:17.858 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167787
17-03-17 21:47:17.858 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16779 mm
17-03-17 21:47:17.858 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:17.858 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 36653, sync = True, waitForSettling = False)
17-03-17 21:47:17.858 -07 000000012 INF: Z Motor: Moving to -0.167787 mm, started at -0.167304 mm, distance = -0.48 um
17-03-17 21:47:17.868 -07 000000012 INF: FPGA: Xmit ZDACW 36653\n [Z Motor]
17-03-17 21:47:17.868 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:47:17.868 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:47:17.868 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:47:17.878 -07 000000012 INF: FPGA: 'ZDACW 36653' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:17.878 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:17.878 -07 000000458 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:47:17.888 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:47:17.888 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:17.888 -07 000000475 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:17.888 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:17.888 -07 000000475 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:47:17.888 -07 000000569 INF: FPGA: Recv ZDACR 36653
17-03-17 21:47:17.898 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:17.898 -07 000000012 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 21:47:17.898 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:18.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:18.048 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:18.048 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:18.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:47:18.048 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:47:18.048 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:18.048 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:18.048 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:47:18.058 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:18.058 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:47:18.268 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:47:18.268 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:47:18.308 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:18.318 -07 000000476 INF: FPGA: Recv YRDPOS 149863
17-03-17 21:47:18.318 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:18.318 -07 000000475 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:18.318 -07 000000475 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 21:47:18.318 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.174 mm/sec
17-03-17 21:47:19.268 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:19.268 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:47:19.278 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:19.278 -07 000000475 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:19.298 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:19.298 -07 000000475 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:47:19.298 -07 000000475 INF: Y Motor: Moved to 73.1758 after 1435 ms (table move)
17-03-17 21:47:19.298 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167787 mm (DAC = 36653)
17-03-17 21:47:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.308 -07 000000476 INF: FPGA: Recv ZSGSRD 35413
17-03-17 21:47:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:47:19.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.308 -07 000000569 INF: FPGA: Recv ZSGSRD 35414
17-03-17 21:47:19.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:47:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.318 -07 000000458 INF: FPGA: Recv ZSGSRD 35408
17-03-17 21:47:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.328 -07 000000576 INF: FPGA: Recv ZSGSRD 35398
17-03-17 21:47:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.338 -07 000000459 INF: FPGA: Recv ZSGSRD 35410
17-03-17 21:47:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.348 -07 000000476 INF: FPGA: Recv ZSGSRD 35412
17-03-17 21:47:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35406
17-03-17 21:47:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.368 -07 000000438 INF: FPGA: Recv ZSGSRD 35406
17-03-17 21:47:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35407
17-03-17 21:47:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.388 -07 000000512 INF: FPGA: Recv ZSGSRD 35411
17-03-17 21:47:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:19.398 -07 000000476 INF: FPGA: Recv ZPIEZORD 31447
17-03-17 21:47:19.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.408 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -8.7 V.
17-03-17 21:47:19.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35408 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35409 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35398 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:47:19.408 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35408, posNoise = 6, negNoise = 10
17-03-17 21:47:19.408 -07 000000610 INF: Z Motor: After move to -0.167787, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:19.408 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 101 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:47:19.408 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:19.458 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:47:19.458 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:19.458 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.167791855526607. ----------
17-03-17 21:47:19.458 -07 000000610 INF: Cycle	55	Tile	17	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:19.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36476, sync = True, waitForSettling = True)
17-03-17 21:47:19.458 -07 000000610 INF: Z Motor: Moving to -0.166976 mm, started at -0.167792 mm, distance = 0.82 um
17-03-17 21:47:19.458 -07 000000610 INF: FPGA: Xmit ZDACW 36476\n [Z Motor]
17-03-17 21:47:19.458 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:47:19.468 -07 000000610 INF: FPGA: 'ZDACW 36476' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:19.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:19.468 -07 000000429 INF: FPGA: Recv ZDACR 36476
17-03-17 21:47:19.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:19.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:47:19.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:19.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.638 -07 000000626 INF: FPGA: Recv ZSGSRD 35283
17-03-17 21:47:19.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.648 -07 000000627 INF: FPGA: Recv ZSGSRD 35286
17-03-17 21:47:19.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.658 -07 000000480 INF: FPGA: Recv ZSGSRD 35287
17-03-17 21:47:19.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.668 -07 000000458 INF: FPGA: Recv ZSGSRD 35278
17-03-17 21:47:19.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35282
17-03-17 21:47:19.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35282
17-03-17 21:47:19.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.698 -07 000000608 INF: FPGA: Recv ZSGSRD 35285
17-03-17 21:47:19.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.708 -07 000000512 INF: FPGA: Recv ZSGSRD 35282
17-03-17 21:47:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:19.718 -07 000000012 INF: FPGA: Recv ZSGSRD 35281
17-03-17 21:47:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:19.728 -07 000000547 INF: FPGA: Recv ZPIEZORD 31230
17-03-17 21:47:19.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:19.738 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -8.9 V.
17-03-17 21:47:19.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35282 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35282 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35273 (-166.1 uncal um), Max = 35287 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:47:19.738 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35282, posNoise = 5, negNoise = 9
17-03-17 21:47:19.738 -07 000000610 INF: Z Motor: After move to -0.166976, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:19.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:47:19.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:19.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:19.738 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:19.738 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:19.738 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:19.738 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:19.738 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:19.738 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:19.738 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:19.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:19.738 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:19.738 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:19.748 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:19.748 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:19.748 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:47:19.748 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:19.758 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:47:19.758 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:19.758 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:47:19.758 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:19.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36653 150\n [Camera]
17-03-17 21:47:19.958 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:20.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:20.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:20.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:20.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:20.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:47:20.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:20.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:20.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:20.408 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:20.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:47:20.418 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.99219,
17-03-17 21:47:20.598 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36653 823
17-03-17 21:47:20.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:20.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:47:20.798 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:47:20.798 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:20.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:47:20.798 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:47:20.798 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:20.798 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:20.798 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:47:20.798 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:20.808 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:47:20.958 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:20.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:20.958 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:20.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:20.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:47:20.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:20.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:20.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:20.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:20.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:47:21.148 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:21.148 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:21.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36653 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall
17-03-17 21:47:21.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:47:21.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166982404796745. ------
17-03-17 21:47:21.148 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:21.158 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17334 mm
17-03-17 21:47:21.158 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:21.158 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:21.158 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:47:21.158 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:47:21.158 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37865, sync = True, waitForSettling = False)
17-03-17 21:47:21.158 -07 000000626 INF: Z Motor: Moving to -0.173335 mm, started at -0.166982 mm, distance = -6.35 um
17-03-17 21:47:21.168 -07 000000626 INF: FPGA: Xmit ZDACW 37865\n [Z Motor]
17-03-17 21:47:21.168 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:21.168 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:47:21.178 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:21.178 -07 000000626 INF: FPGA: 'ZDACW 37865' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:47:21.178 -07 000000438 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:47:21.188 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:47:21.188 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:47:21.188 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:21.188 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:21.188 -07 000000569 INF: Y Motor: Moving 1355 steps-35
17-03-17 21:47:21.198 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:21.198 -07 000000438 INF: FPGA: Recv ZDACR 37865
17-03-17 21:47:21.208 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:47:21.208 -07 000000626 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:47:21.208 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:21.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:21.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:21.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:21.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:21.338 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:47:21.338 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:21.338 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:21.338 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:47:21.338 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:21.348 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:47:21.388 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:47:21.388 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:47:21.578 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:47:21.578 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:47:21.618 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:21.618 -07 000000438 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:47:21.628 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:21.628 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:21.628 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:47:21.628 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 21:47:21.908 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:21.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:22.578 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:22.578 -07 000000512 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:47:22.588 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:22.588 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:22.598 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:22.598 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:22.598 -07 000000569 INF: Y Motor: Moved to 74.0073 after 1444 ms (table move)
17-03-17 21:47:22.608 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173335 mm (DAC = 37865)
17-03-17 21:47:22.608 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.608 -07 000000458 INF: FPGA: Recv ZSGSRD 36275
17-03-17 21:47:22.618 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:47:22.618 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.618 -07 000000512 INF: FPGA: Recv ZSGSRD 36279
17-03-17 21:47:22.628 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.628 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.628 -07 000000012 INF: FPGA: Recv ZSGSRD 36266
17-03-17 21:47:22.638 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.638 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.638 -07 000000608 INF: FPGA: Recv ZSGSRD 36272
17-03-17 21:47:22.648 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.648 -07 000000547 INF: FPGA: Recv ZSGSRD 36275
17-03-17 21:47:22.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.658 -07 000000475 INF: FPGA: Recv ZSGSRD 36271
17-03-17 21:47:22.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.668 -07 000000512 INF: FPGA: Recv ZSGSRD 36273
17-03-17 21:47:22.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.678 -07 000000012 INF: FPGA: Recv ZSGSRD 36273
17-03-17 21:47:22.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.688 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.688 -07 000000626 INF: FPGA: Recv ZSGSRD 36279
17-03-17 21:47:22.698 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.698 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:22.698 -07 000000547 INF: FPGA: Recv ZSGSRD 36283
17-03-17 21:47:22.708 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.708 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:22.708 -07 000000501 INF: FPGA: Recv ZPIEZORD 32582
17-03-17 21:47:22.718 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:22.718 -07 000000476 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.2 V.
17-03-17 21:47:22.718 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36275 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36274 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36266 (-172.4 uncal um), Max = 36283 (-172.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:47:22.718 -07 000000476 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36275, posNoise = 8, negNoise = 9
17-03-17 21:47:22.718 -07 000000476 INF: Z Motor: After move to -0.173335, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:22.718 -07 000000476 INF: Z Motor: Settle wait time = 1448 ms, measure time = 108 ms (allowed 150 ms), total time = 1556 ms
17-03-17 21:47:22.718 -07 000000476 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:22.768 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:47:22.768 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:22.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:22.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:22.768 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:22.768 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:22.768 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:47:22.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:22.778 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:22.778 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:47:22.778 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:22.778 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:47:22.788 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:47:22.788 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:47:22.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:47:22.838 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:47:23.038 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:47:23.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:47:23.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:47:23.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:47:23.068 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:47:23.078 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:47:23.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:47:23.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:47:23.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:23.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:47:23.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:47:23.178 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:23.178 -07 000000475 INF: Autofocus start
17-03-17 21:47:23.178 -07 000000475 INF: MeasureProfile start
17-03-17 21:47:23.178 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:23.188 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:47:23.188 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:47:23.188 -07 000000475 INF: MeasureProfile done
17-03-17 21:47:23.188 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:47:23.188 -07 000000475 INF: Autofocus finished
17-03-17 21:47:23.388 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:47:23.388 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:47:23.388 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173361647453514. ----------
17-03-17 21:47:23.388 -07 000000610 INF: Cycle	55	Tile	18	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:23.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36362, sync = True, waitForSettling = True)
17-03-17 21:47:23.398 -07 000000610 INF: Z Motor: Moving to -0.166455 mm, started at -0.173362 mm, distance = 6.91 um
17-03-17 21:47:23.398 -07 000000610 INF: FPGA: Xmit ZDACW 36362\n [Z Motor]
17-03-17 21:47:23.398 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:47:23.408 -07 000000610 INF: FPGA: 'ZDACW 36362' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:23.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:23.408 -07 000000627 INF: FPGA: Recv ZDACR 36362
17-03-17 21:47:23.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:23.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.568 -07 000000547 INF: FPGA: Recv ZSGSRD 35199
17-03-17 21:47:23.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:23.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.578 -07 000000429 INF: FPGA: Recv ZSGSRD 35206
17-03-17 21:47:23.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35199
17-03-17 21:47:23.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.598 -07 000000415 INF: FPGA: Recv ZSGSRD 35198
17-03-17 21:47:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.608 -07 000000424 INF: FPGA: Recv ZSGSRD 35208
17-03-17 21:47:23.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.618 -07 000000012 INF: FPGA: Recv ZSGSRD 35202
17-03-17 21:47:23.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.628 -07 000000476 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:47:23.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.638 -07 000000012 INF: FPGA: Recv ZSGSRD 35196
17-03-17 21:47:23.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.648 -07 000000476 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:47:23.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:23.658 -07 000000012 INF: FPGA: Recv ZSGSRD 35200
17-03-17 21:47:23.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:23.668 -07 000000480 INF: FPGA: Recv ZPIEZORD 31151
17-03-17 21:47:23.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:23.678 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -8.9 V.
17-03-17 21:47:23.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35200 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35199 (-165.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35194 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:47:23.678 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35200, posNoise = 8, negNoise = 6
17-03-17 21:47:23.678 -07 000000610 INF: Z Motor: After move to -0.166455, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:23.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:47:23.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:23.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:23.678 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:23.678 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:23.678 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:23.678 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:23.678 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:23.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:23.678 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:47:23.678 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:23.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:23.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:23.688 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:23.688 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:23.688 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:23.688 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:23.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:47:23.698 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:47:23.698 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:47:23.698 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:47:23.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36539 150\n [Camera]
17-03-17 21:47:23.898 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:24.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:24.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:24.338 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:24.338 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:24.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:47:24.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:24.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:24.338 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:24.338 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:24.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:47:24.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36539 823
17-03-17 21:47:24.678 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:24.728 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:47:24.728 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:47:24.728 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:24.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:47:24.738 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:47:24.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:24.738 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:47:24.738 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:47:24.738 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:47:24.758 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:47:24.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:24.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:24.888 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:25.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:25.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:25.018 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:25.018 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:25.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:47:25.028 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:25.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:47:25.078 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:25.078 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:25.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36539 150' command took 2 ms to send, 1378 ms to get response, and 1383 ms overall
17-03-17 21:47:25.078 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166917
17-03-17 21:47:25.088 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16692 mm
17-03-17 21:47:25.088 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:25.088 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 36463, sync = True, waitForSettling = False)
17-03-17 21:47:25.088 -07 000000382 INF: Z Motor: Moving to -0.166917 mm, started at -0.166456 mm, distance = -0.46 um
17-03-17 21:47:25.088 -07 000000382 INF: FPGA: Xmit ZDACW 36463\n [Z Motor]
17-03-17 21:47:25.088 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:47:25.088 -07 000000424 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 21:47:25.088 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:47:25.098 -07 000000382 INF: FPGA: 'ZDACW 36463' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:47:25.098 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:25.098 -07 000000475 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:47:25.108 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:47:25.108 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:25.108 -07 000000424 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:25.108 -07 000000569 INF: FPGA: Recv ZDACR 36463
17-03-17 21:47:25.108 -07 000000424 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:25.108 -07 000000424 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:47:25.118 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:25.118 -07 000000382 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:47:25.118 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:25.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:47:25.408 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:47:25.408 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:25.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:47:25.408 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:47:25.408 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:25.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:25.408 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:47:25.408 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 21:47:25.418 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:47:25.488 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:47:25.488 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:47:25.518 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:25.518 -07 000000501 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:47:25.528 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:47:25.528 -07 000000424 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:25.528 -07 000000424 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:47:25.528 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.196 mm/sec
17-03-17 21:47:25.788 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.008536,
17-03-17 21:47:26.478 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:26.478 -07 000000512 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:47:26.488 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:26.488 -07 000000424 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:26.498 -07 000000424 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:26.498 -07 000000424 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:26.498 -07 000000424 INF: Y Motor: Moved to 74.8315 after 1412 ms (table move)
17-03-17 21:47:26.498 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166917 mm (DAC = 36463)
17-03-17 21:47:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35272
17-03-17 21:47:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:47:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.508 -07 000000415 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:47:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.518 -07 000000547 INF: FPGA: Recv ZSGSRD 35265
17-03-17 21:47:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35274
17-03-17 21:47:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.538 -07 000000459 INF: FPGA: Recv ZSGSRD 35275
17-03-17 21:47:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35275
17-03-17 21:47:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.558 -07 000000012 INF: FPGA: Recv ZSGSRD 35282
17-03-17 21:47:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.568 -07 000000576 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:47:26.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.578 -07 000000476 INF: FPGA: Recv ZSGSRD 35271
17-03-17 21:47:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35264
17-03-17 21:47:26.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:26.598 -07 000000501 INF: FPGA: Recv ZPIEZORD 31245
17-03-17 21:47:26.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.608 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -8.9 V.
17-03-17 21:47:26.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35273 (-166.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35264 (-166.0 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:47:26.608 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 10, negNoise = 8
17-03-17 21:47:26.608 -07 000000610 INF: Z Motor: After move to -0.166917, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:26.608 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 102 ms (allowed 150 ms), total time = 1517 ms
17-03-17 21:47:26.608 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:26.658 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 21:47:26.658 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:26.658 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.166918162675327. ----------
17-03-17 21:47:26.658 -07 000000610 INF: Cycle	55	Tile	19	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:26.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36286, sync = True, waitForSettling = True)
17-03-17 21:47:26.658 -07 000000610 INF: Z Motor: Moving to -0.166107 mm, started at -0.166918 mm, distance = 0.81 um
17-03-17 21:47:26.658 -07 000000610 INF: FPGA: Xmit ZDACW 36286\n [Z Motor]
17-03-17 21:47:26.658 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:47:26.668 -07 000000610 INF: FPGA: 'ZDACW 36286' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:26.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:26.668 -07 000000576 INF: FPGA: Recv ZDACR 36286
17-03-17 21:47:26.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:26.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.828 -07 000000012 INF: FPGA: Recv ZSGSRD 35144
17-03-17 21:47:26.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35148
17-03-17 21:47:26.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.848 -07 000000501 INF: FPGA: Recv ZSGSRD 35151
17-03-17 21:47:26.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.858 -07 000000424 INF: FPGA: Recv ZSGSRD 35147
17-03-17 21:47:26.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.868 -07 000000438 INF: FPGA: Recv ZSGSRD 35146
17-03-17 21:47:26.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.878 -07 000000012 INF: FPGA: Recv ZSGSRD 35155
17-03-17 21:47:26.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35149
17-03-17 21:47:26.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.898 -07 000000626 INF: FPGA: Recv ZSGSRD 35147
17-03-17 21:47:26.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.908 -07 000000424 INF: FPGA: Recv ZSGSRD 35144
17-03-17 21:47:26.908 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:26.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:26.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:26.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35143
17-03-17 21:47:26.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:26.928 -07 000000431 INF: FPGA: Recv ZPIEZORD 31103
17-03-17 21:47:26.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:26.938 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.537 V. Piezo Error = -8.9 V.
17-03-17 21:47:26.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35147 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35147 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35143 (-165.2 uncal um), Max = 35155 (-165.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:47:26.938 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35147, posNoise = 8, negNoise = 4
17-03-17 21:47:26.938 -07 000000610 INF: Z Motor: After move to -0.166107, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:26.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:47:26.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:26.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:26.938 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:26.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:26.938 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:26.938 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:26.938 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:26.938 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:26.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:26.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:26.938 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:26.938 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:26.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:26.948 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:26.948 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:26.948 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:26.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:47:26.958 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:47:26.958 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:47:26.958 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:47:26.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 36463 150\n [Camera]
17-03-17 21:47:27.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:27.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:27.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:27.598 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:27.598 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:27.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:47:27.598 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:27.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:27.598 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:27.598 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:27.598 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:47:27.788 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36463 823
17-03-17 21:47:27.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:27.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:27.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:47:27.978 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:27.978 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:27.978 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:47:27.978 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:27.988 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:27.988 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:47:27.988 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:27.998 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:47:28.148 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:28.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:28.158 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:28.158 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:28.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 21:47:28.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:28.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:28.158 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:28.278 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:28.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:47:28.348 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:28.348 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:28.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 36463 150' command took 2 ms to send, 1371 ms to get response, and 1384 ms overall
17-03-17 21:47:28.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:47:28.538 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:47:28.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:28.548 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:28.548 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:47:28.548 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:47:28.588 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:47:28.658 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:47:28.658 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:47:28.658 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:28.658 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:47:28.658 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 21:47:28.658 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:47:28.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:47:28.708 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:47:28.708 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:47:28.708 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 21:47:28.718 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:28.718 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:47:29.218 -07 000000459 INF: FPGA: Recv EMIN
17-03-17 21:47:29.218 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:47:29.218 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:47:29.218 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 21:47:29.228 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:47:29.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:47:29.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166115136157607. ------
17-03-17 21:47:29.228 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:29.228 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14043 mm
17-03-17 21:47:29.228 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:29.238 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:29.238 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:29.238 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30676, sync = True, waitForSettling = False)
17-03-17 21:47:29.238 -07 000000569 INF: Z Motor: Moving to -0.140426 mm, started at -0.166115 mm, distance = 25.69 um
17-03-17 21:47:29.238 -07 000000569 INF: FPGA: Xmit ZDACW 30676\n [Z Motor]
17-03-17 21:47:29.238 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:47:29.238 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:47:29.238 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:47:29.248 -07 000000569 INF: FPGA: 'ZDACW 30676' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:29.248 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:29.248 -07 000000458 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:47:29.258 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:47:29.258 -07 000000459 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:29.258 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:47:29.258 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:47:29.258 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:47:29.268 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:29.268 -07 000000512 INF: FPGA: Recv ZDACR 30676
17-03-17 21:47:29.278 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:47:29.278 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:47:29.278 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:47:29.458 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:47:29.458 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:47:30.898 -07 000000415 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:47:30.898 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-17 21:47:30.898 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:47:30.898 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:47:30.898 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-17 21:47:31.168 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.041198,
17-03-17 21:47:31.908 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:31.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:33.748 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:33.748 -07 000000424 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:47:33.758 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.758 -07 000000459 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:33.788 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:33.788 -07 000000459 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 21:47:33.788 -07 000000459 INF: Y Motor: Moved to 59.9111 after 4551 ms
17-03-17 21:47:33.788 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140426 mm (DAC = 30676)
17-03-17 21:47:33.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.788 -07 000000608 INF: FPGA: Recv ZSGSRD 31150
17-03-17 21:47:33.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:33.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.798 -07 000000475 INF: FPGA: Recv ZSGSRD 31150
17-03-17 21:47:33.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.808 -07 000000012 INF: FPGA: Recv ZSGSRD 31143
17-03-17 21:47:33.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.818 -07 000000476 INF: FPGA: Recv ZSGSRD 31152
17-03-17 21:47:33.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.828 -07 000000382 INF: FPGA: Recv ZSGSRD 31148
17-03-17 21:47:33.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.838 -07 000000608 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:47:33.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.848 -07 000000415 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:47:33.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.858 -07 000000569 INF: FPGA: Recv ZSGSRD 31150
17-03-17 21:47:33.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.868 -07 000000627 INF: FPGA: Recv ZSGSRD 31152
17-03-17 21:47:33.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:33.878 -07 000000458 INF: FPGA: Recv ZSGSRD 31147
17-03-17 21:47:33.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.888 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:33.888 -07 000000608 INF: FPGA: Recv ZPIEZORD 26869
17-03-17 21:47:33.898 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:33.898 -07 000000547 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.681 V. Piezo Error = -9.4 V.
17-03-17 21:47:33.898 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31150 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31150 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31143 (-139.6 uncal um), Max = 31154 (-139.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:47:33.898 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31150, posNoise = 4, negNoise = 7
17-03-17 21:47:33.898 -07 000000547 INF: Z Motor: After move to -0.140426, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:33.898 -07 000000547 INF: Z Motor: Settle wait time = 4555 ms, measure time = 104 ms (allowed 150 ms), total time = 4659 ms
17-03-17 21:47:33.898 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:33.948 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4712 ms
17-03-17 21:47:33.948 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:33.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:33.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:33.948 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:33.948 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:33.948 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:47:33.948 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:33.948 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:47:33.948 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:47:33.968 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 21:47:33.968 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:47:33.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:33.978 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:47:33.978 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:47:33.978 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 21:47:33.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:47:34.028 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:47:34.228 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:47:34.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:47:34.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:47:34.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:47:34.268 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:47:34.268 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:47:34.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:47:34.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:47:34.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:34.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:47:34.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:47:34.368 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:34.368 -07 000000012 INF: Image SNR check: start
17-03-17 21:47:34.368 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:34.378 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:47:34.378 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:47:34.378 -07 000000012 INF: Image SNR check: pass  [peak (Max-Min)=60.72]
17-03-17 21:47:34.378 -07 000000012 INF: Autofocus start
17-03-17 21:47:34.378 -07 000000012 INF: MeasureProfile start
17-03-17 21:47:34.388 -07 000000012 INF: MeasureProfile done
17-03-17 21:47:34.388 -07 000000012 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:47:34.388 -07 000000012 INF: Autofocus finished
17-03-17 21:47:34.578 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:47:34.578 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:47:34.578 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140437560226989. ----------
17-03-17 21:47:34.578 -07 000000610 INF: Cycle	55	Tile	1	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:34.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29200, sync = True, waitForSettling = True)
17-03-17 21:47:34.588 -07 000000610 INF: Z Motor: Moving to -0.133669 mm, started at -0.140438 mm, distance = 6.77 um
17-03-17 21:47:34.588 -07 000000610 INF: FPGA: Xmit ZDACW 29200\n [Z Motor]
17-03-17 21:47:34.588 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:47:34.598 -07 000000610 INF: FPGA: 'ZDACW 29200' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:34.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:34.598 -07 000000458 INF: FPGA: Recv ZDACR 29200
17-03-17 21:47:34.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:34.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.758 -07 000000429 INF: FPGA: Recv ZSGSRD 30098
17-03-17 21:47:34.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:34.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30101
17-03-17 21:47:34.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.778 -07 000000576 INF: FPGA: Recv ZSGSRD 30098
17-03-17 21:47:34.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.788 -07 000000547 INF: FPGA: Recv ZSGSRD 30090
17-03-17 21:47:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.798 -07 000000431 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:47:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.808 -07 000000627 INF: FPGA: Recv ZSGSRD 30107
17-03-17 21:47:34.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.818 -07 000000476 INF: FPGA: Recv ZSGSRD 30091
17-03-17 21:47:34.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.828 -07 000000512 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:47:34.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.838 -07 000000459 INF: FPGA: Recv ZSGSRD 30094
17-03-17 21:47:34.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:34.848 -07 000000608 INF: FPGA: Recv ZSGSRD 30099
17-03-17 21:47:34.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:34.858 -07 000000475 INF: FPGA: Recv ZPIEZORD 25722
17-03-17 21:47:34.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:34.868 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.6 V.
17-03-17 21:47:34.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30096 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30096 (-132.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30089 (-132.8 uncal um), Max = 30107 (-132.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:47:34.868 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30096, posNoise = 11, negNoise = 7
17-03-17 21:47:34.868 -07 000000610 INF: Z Motor: After move to -0.133669, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:34.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:47:34.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:34.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:34.868 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:34.868 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:34.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:34.868 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:34.868 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:34.868 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:34.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:34.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:34.868 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:34.868 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:47:34.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:34.868 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:34.878 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:47:34.878 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:47:34.888 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:47:34.888 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:34.888 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:47:34.898 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:34.898 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:47:34.898 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 21:47:34.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29377 150\n [Camera]
17-03-17 21:47:35.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:35.548 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:35.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:35.548 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:35.548 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:35.548 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:47:35.548 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:35.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:35.548 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:35.548 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:35.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:47:35.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29377 823
17-03-17 21:47:35.888 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:35.928 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:47:35.928 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:47:35.928 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:35.928 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:47:35.928 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:47:35.928 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:35.928 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:35.928 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:35.928 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:47:35.938 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:47:36.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:36.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:36.098 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:36.098 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:36.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:47:36.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:36.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:36.098 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:36.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:36.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:47:36.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:36.288 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:36.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29377 150' command took 2 ms to send, 1376 ms to get response, and 1384 ms overall
17-03-17 21:47:36.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:47:36.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133666440629573. ------
17-03-17 21:47:36.298 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:36.298 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14016 mm
17-03-17 21:47:36.298 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:36.298 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:47:36.298 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 21:47:36.298 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:36.298 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30619, sync = True, waitForSettling = False)
17-03-17 21:47:36.298 -07 000000458 INF: Z Motor: Moving to -0.140165 mm, started at -0.133666 mm, distance = -6.50 um
17-03-17 21:47:36.308 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:47:36.308 -07 000000458 INF: FPGA: Xmit ZDACW 30619\n [Z Motor]
17-03-17 21:47:36.308 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:47:36.318 -07 000000458 INF: FPGA: 'ZDACW 30619' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:47:36.318 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:36.318 -07 000000626 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:47:36.328 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:47:36.328 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:47:36.328 -07 000000569 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:36.328 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:36.328 -07 000000569 INF: Y Motor: Moving 1330 steps2
17-03-17 21:47:36.338 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:36.338 -07 000000576 INF: FPGA: Recv ZDACR 30619
17-03-17 21:47:36.348 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:47:36.348 -07 000000458 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:47:36.348 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:36.498 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:47:36.498 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:47:36.498 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:36.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:47:36.498 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:47:36.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:36.508 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:36.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:47:36.508 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:36.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:47:36.528 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.014009,
17-03-17 21:47:36.538 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:47:36.538 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 231 ms overall
17-03-17 21:47:36.718 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:47:36.718 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:47:36.748 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:36.758 -07 000000475 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:47:36.758 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:47:36.758 -07 000000569 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:36.758 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:47:36.758 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 21:47:36.908 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:36.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:37.708 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:37.708 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:47:37.718 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:37.718 -07 000000569 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:37.738 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:37.738 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:37.738 -07 000000569 INF: Y Motor: Moved to 60.7329 after 1438 ms (table move)
17-03-17 21:47:37.738 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140165 mm (DAC = 30619)
17-03-17 21:47:37.738 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.748 -07 000000475 INF: FPGA: Recv ZSGSRD 31118
17-03-17 21:47:37.748 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:47:37.748 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.748 -07 000000501 INF: FPGA: Recv ZSGSRD 31109
17-03-17 21:47:37.758 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:47:37.758 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.758 -07 000000512 INF: FPGA: Recv ZSGSRD 31108
17-03-17 21:47:37.768 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.768 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.768 -07 000000626 INF: FPGA: Recv ZSGSRD 31116
17-03-17 21:47:37.778 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.778 -07 000000415 INF: FPGA: Recv ZSGSRD 31107
17-03-17 21:47:37.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.788 -07 000000458 INF: FPGA: Recv ZSGSRD 31117
17-03-17 21:47:37.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.798 -07 000000608 INF: FPGA: Recv ZSGSRD 31111
17-03-17 21:47:37.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.808 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.808 -07 000000480 INF: FPGA: Recv ZSGSRD 31098
17-03-17 21:47:37.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.818 -07 000000459 INF: FPGA: Recv ZSGSRD 31105
17-03-17 21:47:37.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:37.828 -07 000000429 INF: FPGA: Recv ZSGSRD 31102
17-03-17 21:47:37.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.838 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:37.838 -07 000000382 INF: FPGA: Recv ZPIEZORD 27099
17-03-17 21:47:37.848 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:37.848 -07 000000438 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -8.8 V.
17-03-17 21:47:37.848 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31109 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31108 (-139.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 31098 (-139.3 uncal um), Max = 31118 (-139.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:47:37.848 -07 000000438 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31109, posNoise = 9, negNoise = 11
17-03-17 21:47:37.848 -07 000000438 INF: Z Motor: After move to -0.140165, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:37.848 -07 000000438 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:47:37.848 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:37.898 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:47:37.898 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:37.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:37.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:37.898 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:37.898 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:47:37.898 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:37.898 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:37.898 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:37.898 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:47:37.908 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:37.908 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:47:37.918 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:47:37.918 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:47:37.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:47:37.968 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:47:38.168 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:47:38.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:47:38.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:47:38.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 21:47:38.208 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:47:38.208 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:47:38.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:47:38.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:47:38.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:38.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:47:38.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:47:38.308 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:38.308 -07 000000501 INF: Autofocus start
17-03-17 21:47:38.308 -07 000000501 INF: MeasureProfile start
17-03-17 21:47:38.308 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:38.318 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:38.318 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:47:38.318 -07 000000501 INF: MeasureProfile done
17-03-17 21:47:38.318 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:47:38.318 -07 000000501 INF: Autofocus finished
17-03-17 21:47:38.518 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:47:38.518 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:47:38.518 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140174167529177. ----------
17-03-17 21:47:38.518 -07 000000610 INF: Cycle	55	Tile	2	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:38.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29126, sync = True, waitForSettling = True)
17-03-17 21:47:38.528 -07 000000610 INF: Z Motor: Moving to -0.133330 mm, started at -0.140174 mm, distance = 6.84 um
17-03-17 21:47:38.528 -07 000000610 INF: FPGA: Xmit ZDACW 29126\n [Z Motor]
17-03-17 21:47:38.528 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:47:38.538 -07 000000610 INF: FPGA: 'ZDACW 29126' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:38.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:38.538 -07 000000415 INF: FPGA: Recv ZDACR 29126
17-03-17 21:47:38.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.698 -07 000000480 INF: FPGA: Recv ZSGSRD 30048
17-03-17 21:47:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.708 -07 000000569 INF: FPGA: Recv ZSGSRD 30043
17-03-17 21:47:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30048
17-03-17 21:47:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.728 -07 000000476 INF: FPGA: Recv ZSGSRD 30047
17-03-17 21:47:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30040
17-03-17 21:47:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.748 -07 000000512 INF: FPGA: Recv ZSGSRD 30047
17-03-17 21:47:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.758 -07 000000501 INF: FPGA: Recv ZSGSRD 30044
17-03-17 21:47:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30047
17-03-17 21:47:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.778 -07 000000626 INF: FPGA: Recv ZSGSRD 30043
17-03-17 21:47:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:38.788 -07 000000012 INF: FPGA: Recv ZSGSRD 30046
17-03-17 21:47:38.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:38.798 -07 000000431 INF: FPGA: Recv ZPIEZORD 25725
17-03-17 21:47:38.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:38.808 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.5 V.
17-03-17 21:47:38.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30045 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30046 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30040 (-132.5 uncal um), Max = 30048 (-132.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:47:38.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30045, posNoise = 3, negNoise = 5
17-03-17 21:47:38.808 -07 000000610 INF: Z Motor: After move to -0.133330, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:38.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:47:38.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:38.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:38.808 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:38.808 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:38.808 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:38.808 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:38.808 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:38.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:38.808 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:38.808 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:38.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:38.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:38.818 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:38.818 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:38.818 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:38.818 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:38.828 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:47:38.828 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:47:38.828 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:47:38.828 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:38.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29303 150\n [Camera]
17-03-17 21:47:39.038 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:47:39.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:39.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:39.468 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:39.468 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:39.468 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:47:39.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:39.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:39.478 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:39.478 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:39.478 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:47:39.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29303 823
17-03-17 21:47:39.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:39.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:47:39.868 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:47:39.868 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:39.878 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:39.878 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:47:39.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:47:39.878 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:47:39.878 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:39.878 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:39.888 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:47:40.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:40.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:40.028 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:40.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:40.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:40.148 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:40.148 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:40.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:47:40.148 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:40.148 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:47:40.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:40.218 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:40.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29303 150' command took 2 ms to send, 1373 ms to get response, and 1384 ms overall
17-03-17 21:47:40.218 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133656
17-03-17 21:47:40.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13366 mm
17-03-17 21:47:40.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:40.218 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:47:40.218 -07 000000415 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:47:40.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:40.218 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 29197, sync = True, waitForSettling = False)
17-03-17 21:47:40.218 -07 000000431 INF: Z Motor: Moving to -0.133655 mm, started at -0.133339 mm, distance = -0.32 um
17-03-17 21:47:40.228 -07 000000431 INF: FPGA: Xmit ZDACW 29197\n [Z Motor]
17-03-17 21:47:40.228 -07 000000382 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:47:40.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:47:40.228 -07 000000415 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:40.228 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:47:40.228 -07 000000415 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:40.228 -07 000000415 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:47:40.238 -07 000000431 INF: FPGA: 'ZDACW 29197' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:47:40.238 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:40.248 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:40.248 -07 000000626 INF: FPGA: Recv ZDACR 29197
17-03-17 21:47:40.258 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:40.258 -07 000000431 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 21:47:40.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:47:40.528 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:47:40.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:40.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:40.538 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:47:40.538 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:47:40.538 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:40.538 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:47:40.538 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:40.538 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 21:47:40.608 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:47:40.608 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:47:40.648 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:40.648 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:47:40.658 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:40.658 -07 000000415 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:40.658 -07 000000415 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:47:40.658 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.221 mm/sec
17-03-17 21:47:41.608 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:41.608 -07 000000458 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:47:41.618 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:41.618 -07 000000415 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:41.638 -07 000000415 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:41.638 -07 000000415 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:41.638 -07 000000415 INF: Y Motor: Moved to 61.5640 after 1417 ms (table move)
17-03-17 21:47:41.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133655 mm (DAC = 29197)
17-03-17 21:47:41.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.648 -07 000000424 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:47:41.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:47:41.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.648 -07 000000547 INF: FPGA: Recv ZSGSRD 30087
17-03-17 21:47:41.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.658 -07 000000475 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:47:41.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30099
17-03-17 21:47:41.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.678 -07 000000415 INF: FPGA: Recv ZSGSRD 30101
17-03-17 21:47:41.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.688 -07 000000626 INF: FPGA: Recv ZSGSRD 30096
17-03-17 21:47:41.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.698 -07 000000608 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:47:41.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.708 -07 000000501 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:47:41.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.718 -07 000000569 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:47:41.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.728 -07 000000480 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:47:41.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:41.738 -07 000000424 INF: FPGA: Recv ZPIEZORD 25812
17-03-17 21:47:41.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.748 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.455 V. Piezo Error = -9.4 V.
17-03-17 21:47:41.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30094 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30095 (-132.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30087 (-132.8 uncal um), Max = 30101 (-132.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:47:41.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30094, posNoise = 7, negNoise = 7
17-03-17 21:47:41.748 -07 000000610 INF: Z Motor: After move to -0.133655, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:41.748 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 103 ms (allowed 150 ms), total time = 1522 ms
17-03-17 21:47:41.748 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:41.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 21:47:41.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:41.798 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.133653592205289. ----------
17-03-17 21:47:41.798 -07 000000610 INF: Cycle	55	Tile	3	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:41.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29020, sync = True, waitForSettling = True)
17-03-17 21:47:41.798 -07 000000610 INF: Z Motor: Moving to -0.132845 mm, started at -0.133654 mm, distance = 0.81 um
17-03-17 21:47:41.798 -07 000000610 INF: FPGA: Xmit ZDACW 29020\n [Z Motor]
17-03-17 21:47:41.798 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:47:41.808 -07 000000610 INF: FPGA: 'ZDACW 29020' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:41.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:41.808 -07 000000475 INF: FPGA: Recv ZDACR 29020
17-03-17 21:47:41.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:41.898 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.993549,
17-03-17 21:47:41.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:41.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.968 -07 000000501 INF: FPGA: Recv ZSGSRD 29969
17-03-17 21:47:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.978 -07 000000608 INF: FPGA: Recv ZSGSRD 29970
17-03-17 21:47:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.988 -07 000000476 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:47:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:41.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:41.998 -07 000000512 INF: FPGA: Recv ZSGSRD 29968
17-03-17 21:47:42.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:42.008 -07 000000576 INF: FPGA: Recv ZSGSRD 29971
17-03-17 21:47:42.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:42.018 -07 000000012 INF: FPGA: Recv ZSGSRD 29964
17-03-17 21:47:42.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:42.028 -07 000000627 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:47:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:42.038 -07 000000480 INF: FPGA: Recv ZSGSRD 29971
17-03-17 21:47:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:42.048 -07 000000429 INF: FPGA: Recv ZSGSRD 29970
17-03-17 21:47:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:42.058 -07 000000431 INF: FPGA: Recv ZSGSRD 29975
17-03-17 21:47:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:42.068 -07 000000012 INF: FPGA: Recv ZPIEZORD 25675
17-03-17 21:47:42.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:42.078 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.4 V.
17-03-17 21:47:42.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29971 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29970 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29964 (-132.0 uncal um), Max = 29975 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:47:42.078 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29971, posNoise = 4, negNoise = 7
17-03-17 21:47:42.078 -07 000000610 INF: Z Motor: After move to -0.132845, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:42.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:47:42.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:42.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:42.078 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:42.078 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:42.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:42.078 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:42.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:42.078 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:42.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:42.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:42.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:42.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:42.088 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:42.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:42.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:42.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:42.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:47:42.098 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:47:42.098 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:47:42.098 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:47:42.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29197 150\n [Camera]
17-03-17 21:47:42.298 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:42.738 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 631
17-03-17 21:47:42.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 631
17-03-17 21:47:42.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:42.738 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 631
17-03-17 21:47:42.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 631
17-03-17 21:47:42.738 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:42.748 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:42.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:47:42.748 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:42.748 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:47:42.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29197 825
17-03-17 21:47:43.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:43.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:47:43.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:47:43.128 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:47:43.128 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:43.128 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:43.128 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:43.128 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:43.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:43.138 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:47:43.138 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:47:43.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:43.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:43.288 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:43.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:43.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:47:43.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:43.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:43.298 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:43.418 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:43.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:47:43.478 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:47:43.478 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:43.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29197 150' command took 2 ms to send, 1378 ms to get response, and 1383 ms overall
17-03-17 21:47:43.488 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133160
17-03-17 21:47:43.488 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13316 mm
17-03-17 21:47:43.488 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:43.488 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:47:43.488 -07 000000012 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:47:43.488 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:43.488 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29089, sync = True, waitForSettling = False)
17-03-17 21:47:43.488 -07 000000480 INF: Z Motor: Moving to -0.133161 mm, started at -0.132863 mm, distance = -0.30 um
17-03-17 21:47:43.488 -07 000000547 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:47:43.498 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:43.498 -07 000000012 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:43.498 -07 000000012 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:43.498 -07 000000012 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:47:43.498 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:43.508 -07 000000480 INF: FPGA: Xmit ZDACW 29089\n [Z Motor]
17-03-17 21:47:43.508 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:47:43.518 -07 000000480 INF: FPGA: 'ZDACW 29089' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:47:43.518 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:43.518 -07 000000429 INF: FPGA: Recv ZDACR 29089
17-03-17 21:47:43.528 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:43.528 -07 000000480 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 21:47:43.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:47:43.678 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:47:43.678 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:43.678 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:43.678 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:47:43.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:47:43.798 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:47:43.798 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:43.798 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:47:43.808 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 21:47:43.868 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:47:43.868 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:47:43.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:43.908 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:47:43.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:43.918 -07 000000012 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:43.918 -07 000000012 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:47:43.918 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-17 21:47:44.868 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:44.868 -07 000000415 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:47:44.878 -07 000000012 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:44.878 -07 000000012 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:44.898 -07 000000012 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:44.898 -07 000000012 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:44.898 -07 000000012 INF: Y Motor: Moved to 62.3955 after 1408 ms (table move)
17-03-17 21:47:44.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133161 mm (DAC = 29089)
17-03-17 21:47:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30025
17-03-17 21:47:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.908 -07 000000476 INF: FPGA: Recv ZSGSRD 30021
17-03-17 21:47:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.918 -07 000000501 INF: FPGA: Recv ZSGSRD 30020
17-03-17 21:47:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.928 -07 000000429 INF: FPGA: Recv ZSGSRD 30011
17-03-17 21:47:44.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:44.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.938 -07 000000431 INF: FPGA: Recv ZSGSRD 30016
17-03-17 21:47:44.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.948 -07 000000012 INF: FPGA: Recv ZSGSRD 30015
17-03-17 21:47:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.958 -07 000000480 INF: FPGA: Recv ZSGSRD 30015
17-03-17 21:47:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30015
17-03-17 21:47:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.978 -07 000000512 INF: FPGA: Recv ZSGSRD 30017
17-03-17 21:47:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:44.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30023
17-03-17 21:47:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:44.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:44.998 -07 000000501 INF: FPGA: Recv ZPIEZORD 25751
17-03-17 21:47:45.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.008 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.4 V.
17-03-17 21:47:45.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30018 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30016 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30011 (-132.3 uncal um), Max = 30025 (-132.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:47:45.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30018, posNoise = 7, negNoise = 7
17-03-17 21:47:45.008 -07 000000610 INF: Z Motor: After move to -0.133161, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:45.008 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 107 ms (allowed 150 ms), total time = 1516 ms
17-03-17 21:47:45.008 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:45.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-17 21:47:45.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:45.058 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.133165352082515. ----------
17-03-17 21:47:45.058 -07 000000610 INF: Cycle	55	Tile	4	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:45.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28912, sync = True, waitForSettling = True)
17-03-17 21:47:45.058 -07 000000610 INF: Z Motor: Moving to -0.132351 mm, started at -0.133165 mm, distance = 0.81 um
17-03-17 21:47:45.058 -07 000000610 INF: FPGA: Xmit ZDACW 28912\n [Z Motor]
17-03-17 21:47:45.058 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:47:45.068 -07 000000610 INF: FPGA: 'ZDACW 28912' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:45.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:45.068 -07 000000627 INF: FPGA: Recv ZDACR 28912
17-03-17 21:47:45.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:45.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.228 -07 000000431 INF: FPGA: Recv ZSGSRD 29893
17-03-17 21:47:45.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.238 -07 000000438 INF: FPGA: Recv ZSGSRD 29905
17-03-17 21:47:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29889
17-03-17 21:47:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29886
17-03-17 21:47:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.268 -07 000000608 INF: FPGA: Recv ZSGSRD 29896
17-03-17 21:47:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29894
17-03-17 21:47:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.288 -07 000000627 INF: FPGA: Recv ZSGSRD 29893
17-03-17 21:47:45.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.298 -07 000000012 INF: FPGA: Recv ZSGSRD 29890
17-03-17 21:47:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.308 -07 000000415 INF: FPGA: Recv ZSGSRD 29897
17-03-17 21:47:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:45.318 -07 000000480 INF: FPGA: Recv ZSGSRD 29897
17-03-17 21:47:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:45.328 -07 000000626 INF: FPGA: Recv ZPIEZORD 25570
17-03-17 21:47:45.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:45.338 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.5 V.
17-03-17 21:47:45.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29894 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29894 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29886 (-131.5 uncal um), Max = 29905 (-131.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:47:45.338 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29894, posNoise = 11, negNoise = 8
17-03-17 21:47:45.338 -07 000000610 INF: Z Motor: After move to -0.132351, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:45.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:47:45.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:45.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:45.338 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:45.338 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:45.338 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:45.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:45.338 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:45.338 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:45.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:45.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:45.338 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:45.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:45.348 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:45.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:45.348 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:45.348 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:45.358 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:47:45.358 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:45.358 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:47:45.358 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:45.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29089 150\n [Camera]
17-03-17 21:47:45.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:45.998 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:45.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:46.008 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:46.008 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:46.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 21:47:46.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:46.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:46.008 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:46.008 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:46.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:47:46.198 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29089 823
17-03-17 21:47:46.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:46.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:47:46.378 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:47:46.378 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:46.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:47:46.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:47:46.378 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:46.388 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:46.388 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:47:46.388 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:46.398 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:47:46.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:46.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:46.558 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:46.558 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:46.558 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:47:46.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:46.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:46.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:46.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:46.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:47:46.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:47:46.748 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:46.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29089 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-17 21:47:46.748 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133110
17-03-17 21:47:46.748 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13311 mm
17-03-17 21:47:46.748 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:46.748 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:47:46.758 -07 000000415 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:47:46.758 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:46.758 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29078, sync = True, waitForSettling = False)
17-03-17 21:47:46.758 -07 000000458 INF: Z Motor: Moving to -0.133111 mm, started at -0.132369 mm, distance = -0.74 um
17-03-17 21:47:46.758 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:47:46.768 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:46.768 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:46.768 -07 000000415 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:46.768 -07 000000415 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:47:46.768 -07 000000458 INF: FPGA: Xmit ZDACW 29078\n [Z Motor]
17-03-17 21:47:46.768 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:47:46.778 -07 000000458 INF: FPGA: 'ZDACW 29078' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:46.778 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:46.778 -07 000000429 INF: FPGA: Recv ZDACR 29078
17-03-17 21:47:46.788 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:46.788 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:46.788 -07 000000458 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:47:46.908 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:46.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:46.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:46.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:46.938 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:46.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:47:46.938 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:47:46.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:46.938 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:46.938 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:47:46.938 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:46.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:47:47.158 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:47:47.158 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 21:47:47.208 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:47.218 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:47:47.218 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:47:47.218 -07 000000415 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:47.218 -07 000000415 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:47:47.218 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 21:47:47.268 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.003063,
17-03-17 21:47:48.168 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:48.168 -07 000000012 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:47:48.178 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:48.178 -07 000000415 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:48.198 -07 000000415 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:48.198 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:48.198 -07 000000415 INF: Y Motor: Moved to 63.2241 after 1443 ms (table move)
17-03-17 21:47:48.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133111 mm (DAC = 29078)
17-03-17 21:47:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30005
17-03-17 21:47:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.208 -07 000000431 INF: FPGA: Recv ZSGSRD 30006
17-03-17 21:47:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30020
17-03-17 21:47:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30013
17-03-17 21:47:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.238 -07 000000608 INF: FPGA: Recv ZSGSRD 30014
17-03-17 21:47:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.248 -07 000000458 INF: FPGA: Recv ZSGSRD 30011
17-03-17 21:47:48.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.258 -07 000000476 INF: FPGA: Recv ZSGSRD 30011
17-03-17 21:47:48.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.268 -07 000000415 INF: FPGA: Recv ZSGSRD 30009
17-03-17 21:47:48.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.278 -07 000000438 INF: FPGA: Recv ZSGSRD 30007
17-03-17 21:47:48.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.288 -07 000000459 INF: FPGA: Recv ZSGSRD 30005
17-03-17 21:47:48.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:48.298 -07 000000512 INF: FPGA: Recv ZPIEZORD 25790
17-03-17 21:47:48.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.308 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.3 V.
17-03-17 21:47:48.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30010 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30010 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30005 (-132.3 uncal um), Max = 30020 (-132.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:47:48.308 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30010, posNoise = 10, negNoise = 5
17-03-17 21:47:48.308 -07 000000610 INF: Z Motor: After move to -0.133111, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:48.308 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:47:48.308 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:48.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:47:48.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:48.358 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.133113958385381. ----------
17-03-17 21:47:48.358 -07 000000610 INF: Cycle	55	Tile	5	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:48.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28901, sync = True, waitForSettling = True)
17-03-17 21:47:48.358 -07 000000610 INF: Z Motor: Moving to -0.132300 mm, started at -0.133114 mm, distance = 0.81 um
17-03-17 21:47:48.358 -07 000000610 INF: FPGA: Xmit ZDACW 28901\n [Z Motor]
17-03-17 21:47:48.358 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:47:48.368 -07 000000610 INF: FPGA: 'ZDACW 28901' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:48.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:48.368 -07 000000458 INF: FPGA: Recv ZDACR 28901
17-03-17 21:47:48.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:48.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.528 -07 000000431 INF: FPGA: Recv ZSGSRD 29887
17-03-17 21:47:48.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.538 -07 000000576 INF: FPGA: Recv ZSGSRD 29889
17-03-17 21:47:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.548 -07 000000547 INF: FPGA: Recv ZSGSRD 29885
17-03-17 21:47:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.558 -07 000000424 INF: FPGA: Recv ZSGSRD 29881
17-03-17 21:47:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.568 -07 000000608 INF: FPGA: Recv ZSGSRD 29885
17-03-17 21:47:48.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.578 -07 000000458 INF: FPGA: Recv ZSGSRD 29882
17-03-17 21:47:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29881
17-03-17 21:47:48.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29886
17-03-17 21:47:48.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.608 -07 000000475 INF: FPGA: Recv ZSGSRD 29885
17-03-17 21:47:48.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:48.618 -07 000000626 INF: FPGA: Recv ZSGSRD 29888
17-03-17 21:47:48.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:48.628 -07 000000480 INF: FPGA: Recv ZPIEZORD 25602
17-03-17 21:47:48.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:48.638 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.4 V.
17-03-17 21:47:48.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29885 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29885 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29881 (-131.5 uncal um), Max = 29889 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:47:48.638 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29885, posNoise = 4, negNoise = 4
17-03-17 21:47:48.638 -07 000000610 INF: Z Motor: After move to -0.132300, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:48.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:47:48.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:48.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:48.638 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:48.638 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:48.638 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:48.638 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:48.638 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:48.638 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:48.638 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:48.638 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:48.638 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:48.638 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:48.638 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:48.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:48.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:48.648 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:48.658 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:47:48.658 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:47:48.658 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:47:48.658 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:47:48.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29078 150\n [Camera]
17-03-17 21:47:48.858 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:49.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:49.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:49.298 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:49.298 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:49.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:47:49.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:49.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:49.308 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:49.308 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:49.308 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:47:49.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29078 823
17-03-17 21:47:49.638 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:49.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:47:49.678 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:47:49.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:49.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:47:49.678 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:47:49.678 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:49.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:49.688 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:47:49.688 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:49.688 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:47:49.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:49.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:49.858 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:49.858 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:49.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:47:49.858 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:49.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:49.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:49.858 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:49.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:47:50.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:47:50.048 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:50.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29078 150' command took 2 ms to send, 1375 ms to get response, and 1386 ms overall
17-03-17 21:47:50.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:47:50.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132310931867661. ------
17-03-17 21:47:50.058 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:50.058 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13871 mm
17-03-17 21:47:50.058 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:50.058 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30301, sync = True, waitForSettling = False)
17-03-17 21:47:50.058 -07 000000429 INF: Z Motor: Moving to -0.138709 mm, started at -0.132311 mm, distance = -6.40 um
17-03-17 21:47:50.058 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:50.058 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:47:50.058 -07 000000459 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 21:47:50.068 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:50.068 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:50.068 -07 000000608 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:47:50.078 -07 000000429 INF: FPGA: Xmit ZDACW 30301\n [Z Motor]
17-03-17 21:47:50.078 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:47:50.078 -07 000000459 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:50.078 -07 000000459 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:50.078 -07 000000459 INF: Y Motor: Moving 1342 steps-17
17-03-17 21:47:50.078 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:47:50.088 -07 000000429 INF: FPGA: 'ZDACW 30301' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:47:50.088 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:47:50.098 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:50.108 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:50.108 -07 000000438 INF: FPGA: Recv ZDACR 30301
17-03-17 21:47:50.118 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:47:50.118 -07 000000429 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:47:50.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:50.238 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:47:50.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:50.238 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:47:50.238 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:47:50.238 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:50.248 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:50.248 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:50.248 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:47:50.248 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:47:50.288 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:47:50.288 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:47:50.468 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:47:50.468 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:47:50.508 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:50.518 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:47:50.518 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:47:50.518 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:50.518 -07 000000459 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 21:47:50.518 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-17 21:47:51.468 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:51.468 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:47:51.478 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:51.478 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:51.498 -07 000000459 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:51.498 -07 000000459 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:51.498 -07 000000459 INF: Y Motor: Moved to 64.0571 after 1436 ms (table move)
17-03-17 21:47:51.498 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138709 mm (DAC = 30301)
17-03-17 21:47:51.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.498 -07 000000480 INF: FPGA: Recv ZSGSRD 30874
17-03-17 21:47:51.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:51.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30883
17-03-17 21:47:51.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.518 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.518 -07 000000429 INF: FPGA: Recv ZSGSRD 30882
17-03-17 21:47:51.528 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.528 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.528 -07 000000627 INF: FPGA: Recv ZSGSRD 30894
17-03-17 21:47:51.538 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.538 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.538 -07 000000459 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:47:51.548 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.548 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.548 -07 000000576 INF: FPGA: Recv ZSGSRD 30881
17-03-17 21:47:51.558 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.558 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.558 -07 000000475 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:47:51.568 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.568 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.568 -07 000000512 INF: FPGA: Recv ZSGSRD 30873
17-03-17 21:47:51.578 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.578 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.578 -07 000000480 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:47:51.588 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.588 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:51.588 -07 000000012 INF: FPGA: Recv ZSGSRD 30886
17-03-17 21:47:51.598 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.598 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:51.598 -07 000000431 INF: FPGA: Recv ZPIEZORD 26948
17-03-17 21:47:51.608 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:51.608 -07 000000424 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -8.7 V.
17-03-17 21:47:51.608 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30882 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30882 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30873 (-137.9 uncal um), Max = 30894 (-138.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:47:51.608 -07 000000424 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30882, posNoise = 12, negNoise = 9
17-03-17 21:47:51.608 -07 000000424 INF: Z Motor: After move to -0.138709, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:51.608 -07 000000424 INF: Z Motor: Settle wait time = 1441 ms, measure time = 105 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:47:51.608 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:51.658 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:47:51.658 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:51.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:51.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:51.658 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:51.658 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:51.658 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:47:51.658 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:51.658 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:51.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:47:51.668 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:51.668 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:47:51.678 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:47:51.678 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:47:51.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:47:51.728 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:47:51.908 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:51.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:51.928 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:47:51.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:47:51.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:47:52.048 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:47:52.048 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:47:52.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 363 ms to get response, and 366 ms overall
17-03-17 21:47:52.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:47:52.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:47:52.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:52.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:47:52.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 239 ms.
17-03-17 21:47:52.248 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:47:52.248 -07 000000459 INF: Autofocus start
17-03-17 21:47:52.248 -07 000000459 INF: MeasureProfile start
17-03-17 21:47:52.248 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:47:52.258 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:52.258 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:47:52.258 -07 000000459 INF: MeasureProfile done
17-03-17 21:47:52.258 -07 000000459 INF: X=64  Z correction [um]=0.2839165
17-03-17 21:47:52.258 -07 000000459 INF: Autofocus finished
17-03-17 21:47:52.458 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:47:52.458 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:47:52.468 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138715871372997. ----------
17-03-17 21:47:52.468 -07 000000610 INF: Cycle	55	Tile	6	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:52.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28876, sync = True, waitForSettling = True)
17-03-17 21:47:52.468 -07 000000610 INF: Z Motor: Moving to -0.132186 mm, started at -0.138716 mm, distance = 6.53 um
17-03-17 21:47:52.468 -07 000000610 INF: FPGA: Xmit ZDACW 28876\n [Z Motor]
17-03-17 21:47:52.468 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:47:52.478 -07 000000610 INF: FPGA: 'ZDACW 28876' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:47:52.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:52.478 -07 000000576 INF: FPGA: Recv ZDACR 28876
17-03-17 21:47:52.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:52.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.638 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.981281,
17-03-17 21:47:52.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29866
17-03-17 21:47:52.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:52.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.668 -07 000000415 INF: FPGA: Recv ZSGSRD 29868
17-03-17 21:47:52.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:47:52.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.688 -07 000000569 INF: FPGA: Recv ZSGSRD 29865
17-03-17 21:47:52.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:52.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.718 -07 000000382 INF: FPGA: Recv ZSGSRD 29866
17-03-17 21:47:52.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:47:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.728 -07 000000012 INF: FPGA: Recv ZSGSRD 29862
17-03-17 21:47:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.738 -07 000000431 INF: FPGA: Recv ZSGSRD 29867
17-03-17 21:47:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.748 -07 000000458 INF: FPGA: Recv ZSGSRD 29867
17-03-17 21:47:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29865
17-03-17 21:47:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29866
17-03-17 21:47:52.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:52.778 -07 000000415 INF: FPGA: Recv ZSGSRD 29867
17-03-17 21:47:52.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:52.788 -07 000000459 INF: FPGA: Recv ZPIEZORD 25610
17-03-17 21:47:52.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:52.798 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.4 V.
17-03-17 21:47:52.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29866 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29862 (-131.4 uncal um), Max = 29868 (-131.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:47:52.798 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29866, posNoise = 2, negNoise = 4
17-03-17 21:47:52.798 -07 000000610 INF: Z Motor: After move to -0.132186, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:52.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-17 21:47:52.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:52.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:52.798 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:52.798 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:52.798 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:52.798 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:52.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:52.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:52.798 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:52.798 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:52.798 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:52.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:52.798 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:47:52.798 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:52.808 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:47:52.808 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:52.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:47:52.808 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:47:52.818 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:47:52.818 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:47:52.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 29052 150\n [Camera]
17-03-17 21:47:53.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:53.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:53.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:53.458 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:53.458 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:53.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:53.458 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:53.458 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:53.458 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 21:47:53.458 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:53.458 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:47:53.648 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29052 823
17-03-17 21:47:53.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:53.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:47:53.828 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:47:53.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:53.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:47:53.838 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:47:53.838 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:53.838 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:53.838 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:47:53.838 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:53.848 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:47:54.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:54.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:54.008 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:54.008 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:54.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:47:54.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:54.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:54.018 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:54.138 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:54.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:47:54.198 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:47:54.198 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:54.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 29052 150' command took 2 ms to send, 1376 ms to get response, and 1383 ms overall
17-03-17 21:47:54.198 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.132748
17-03-17 21:47:54.198 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13275 mm
17-03-17 21:47:54.198 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:54.208 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28999, sync = True, waitForSettling = False)
17-03-17 21:47:54.208 -07 000000476 INF: Z Motor: Moving to -0.132749 mm, started at -0.132189 mm, distance = -0.56 um
17-03-17 21:47:54.208 -07 000000476 INF: FPGA: Xmit ZDACW 28999\n [Z Motor]
17-03-17 21:47:54.208 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:47:54.208 -07 000000431 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:47:54.208 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:47:54.218 -07 000000476 INF: FPGA: 'ZDACW 28999' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:47:54.218 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:54.218 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:47:54.228 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:47:54.228 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:54.228 -07 000000431 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:54.228 -07 000000431 INF: Y Motor: Moving 1337 steps-11
17-03-17 21:47:54.228 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:54.228 -07 000000475 INF: FPGA: Recv ZDACR 28999
17-03-17 21:47:54.238 -07 000000476 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:54.238 -07 000000476 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-17 21:47:54.238 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:54.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:47:54.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:47:54.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:54.418 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:54.418 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:47:54.538 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:47:54.538 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:47:54.538 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:54.538 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:47:54.548 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-17 21:47:54.608 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:47:54.618 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 389 ms overall
17-03-17 21:47:54.658 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:54.658 -07 000000512 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:47:54.668 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:54.668 -07 000000431 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:54.668 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:47:54.668 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.835 mm, average velocity = 2.148 mm/sec
17-03-17 21:47:55.618 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:55.618 -07 000000458 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:47:55.628 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:55.628 -07 000000431 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:55.648 -07 000000431 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:55.648 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:55.648 -07 000000431 INF: Y Motor: Moved to 64.8789 after 1440 ms (table move)
17-03-17 21:47:55.648 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132749 mm (DAC = 28999)
17-03-17 21:47:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.648 -07 000000627 INF: FPGA: Recv ZSGSRD 29950
17-03-17 21:47:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.658 -07 000000512 INF: FPGA: Recv ZSGSRD 29961
17-03-17 21:47:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.668 -07 000000476 INF: FPGA: Recv ZSGSRD 29958
17-03-17 21:47:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.678 -07 000000547 INF: FPGA: Recv ZSGSRD 29953
17-03-17 21:47:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29948
17-03-17 21:47:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.698 -07 000000475 INF: FPGA: Recv ZSGSRD 29955
17-03-17 21:47:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.708 -07 000000512 INF: FPGA: Recv ZSGSRD 29955
17-03-17 21:47:55.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29953
17-03-17 21:47:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.728 -07 000000458 INF: FPGA: Recv ZSGSRD 29958
17-03-17 21:47:55.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29949
17-03-17 21:47:55.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:55.748 -07 000000608 INF: FPGA: Recv ZPIEZORD 25733
17-03-17 21:47:55.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.758 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -9.3 V.
17-03-17 21:47:55.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29954 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29954 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29948 (-131.9 uncal um), Max = 29961 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:47:55.758 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29954, posNoise = 7, negNoise = 6
17-03-17 21:47:55.758 -07 000000610 INF: Z Motor: After move to -0.132749, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:55.758 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:47:55.758 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:55.808 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:47:55.808 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:55.808 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.132754202505443. ----------
17-03-17 21:47:55.808 -07 000000610 INF: Cycle	55	Tile	7	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:55.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28822, sync = True, waitForSettling = True)
17-03-17 21:47:55.808 -07 000000610 INF: Z Motor: Moving to -0.131939 mm, started at -0.132754 mm, distance = 0.82 um
17-03-17 21:47:55.808 -07 000000610 INF: FPGA: Xmit ZDACW 28822\n [Z Motor]
17-03-17 21:47:55.808 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:47:55.818 -07 000000610 INF: FPGA: 'ZDACW 28822' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:55.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:55.818 -07 000000576 INF: FPGA: Recv ZDACR 28822
17-03-17 21:47:55.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.978 -07 000000424 INF: FPGA: Recv ZSGSRD 29833
17-03-17 21:47:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29829
17-03-17 21:47:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:55.998 -07 000000547 INF: FPGA: Recv ZSGSRD 29816
17-03-17 21:47:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.008 -07 000000415 INF: FPGA: Recv ZSGSRD 29823
17-03-17 21:47:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:47:56.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.018 -07 000000012 INF: FPGA: Recv ZSGSRD 29827
17-03-17 21:47:56.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29827
17-03-17 21:47:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29821
17-03-17 21:47:56.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.048 -07 000000569 INF: FPGA: Recv ZSGSRD 29830
17-03-17 21:47:56.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29833
17-03-17 21:47:56.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:56.068 -07 000000438 INF: FPGA: Recv ZSGSRD 29824
17-03-17 21:47:56.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:56.078 -07 000000475 INF: FPGA: Recv ZPIEZORD 25585
17-03-17 21:47:56.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:56.088 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.3 V.
17-03-17 21:47:56.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29826 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29827 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29816 (-131.1 uncal um), Max = 29833 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:47:56.088 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29826, posNoise = 7, negNoise = 10
17-03-17 21:47:56.088 -07 000000610 INF: Z Motor: After move to -0.131939, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:56.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:47:56.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:56.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:56.088 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:56.088 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:56.088 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:56.088 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:56.088 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:56.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:56.088 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:47:56.088 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:56.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:56.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:56.098 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:47:56.098 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:56.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:56.098 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:56.108 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:47:56.108 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:47:56.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:47:56.108 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:47:56.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28999 150\n [Camera]
17-03-17 21:47:56.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:47:56.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:47:56.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:47:56.748 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:56.748 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:56.748 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:47:56.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:47:56.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:47:56.748 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:56.748 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:56.748 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:47:56.908 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:47:56.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:47:56.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28999 825
17-03-17 21:47:57.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:47:57.128 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:47:57.128 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:47:57.128 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:57.128 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:57.128 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:47:57.128 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:57.138 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:57.138 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:47:57.138 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:47:57.138 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:47:57.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:47:57.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:47:57.298 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:47:57.298 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:47:57.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:47:57.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:47:57.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:47:57.308 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:47:57.308 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:47:57.308 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:47:57.488 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1378
17-03-17 21:47:57.488 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:47:57.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28999 150' command took 2 ms to send, 1379 ms to get response, and 1385 ms overall
17-03-17 21:47:57.498 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132685
17-03-17 21:47:57.498 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13269 mm
17-03-17 21:47:57.498 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:47:57.498 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 28985, sync = True, waitForSettling = False)
17-03-17 21:47:57.498 -07 000000627 INF: Z Motor: Moving to -0.132685 mm, started at -0.131932 mm, distance = -0.75 um
17-03-17 21:47:57.498 -07 000000627 INF: FPGA: Xmit ZDACW 28985\n [Z Motor]
17-03-17 21:47:57.498 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:47:57.498 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 21:47:57.498 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:47:57.508 -07 000000627 INF: FPGA: 'ZDACW 28985' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:47:57.508 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:57.508 -07 000000431 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:47:57.518 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:47:57.518 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:57.518 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:47:57.518 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:47:57.518 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:57.518 -07 000000569 INF: FPGA: Recv ZDACR 28985
17-03-17 21:47:57.528 -07 000000627 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:47:57.528 -07 000000627 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 21:47:57.528 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:47:57.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:47:57.678 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:47:57.678 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:57.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:47:57.688 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:47:57.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:47:57.688 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:47:57.688 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:47:57.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:47:57.698 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:47:57.898 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:47:57.898 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:47:57.938 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:57.948 -07 000000382 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:47:57.948 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:47:57.948 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:57.948 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:47:57.948 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 21:47:58.038 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.977204,
17-03-17 21:47:58.898 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:47:58.898 -07 000000480 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:47:58.908 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.908 -07 000000626 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:47:58.928 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:47:58.928 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:47:58.928 -07 000000626 INF: Y Motor: Moved to 65.7139 after 1431 ms (table move)
17-03-17 21:47:58.938 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132685 mm (DAC = 28985)
17-03-17 21:47:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.938 -07 000000438 INF: FPGA: Recv ZSGSRD 29940
17-03-17 21:47:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.948 -07 000000431 INF: FPGA: Recv ZSGSRD 29945
17-03-17 21:47:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29946
17-03-17 21:47:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.968 -07 000000480 INF: FPGA: Recv ZSGSRD 29952
17-03-17 21:47:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.978 -07 000000012 INF: FPGA: Recv ZSGSRD 29946
17-03-17 21:47:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.988 -07 000000547 INF: FPGA: Recv ZSGSRD 29939
17-03-17 21:47:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:58.998 -07 000000458 INF: FPGA: Recv ZSGSRD 29944
17-03-17 21:47:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.008 -07 000000459 INF: FPGA: Recv ZSGSRD 29940
17-03-17 21:47:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.018 -07 000000475 INF: FPGA: Recv ZSGSRD 29945
17-03-17 21:47:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.028 -07 000000415 INF: FPGA: Recv ZSGSRD 29944
17-03-17 21:47:59.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:59.038 -07 000000512 INF: FPGA: Recv ZPIEZORD 25724
17-03-17 21:47:59.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.048 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.3 V.
17-03-17 21:47:59.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29944 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29944 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29939 (-131.9 uncal um), Max = 29952 (-132.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:47:59.048 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29944, posNoise = 8, negNoise = 5
17-03-17 21:47:59.048 -07 000000610 INF: Z Motor: After move to -0.132685, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:59.048 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 111 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:47:59.048 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:47:59.088 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 21:47:59.088 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:47:59.088 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.132689960384025. ----------
17-03-17 21:47:59.088 -07 000000610 INF: Cycle	55	Tile	8	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:47:59.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28808, sync = True, waitForSettling = True)
17-03-17 21:47:59.088 -07 000000610 INF: Z Motor: Moving to -0.131875 mm, started at -0.132690 mm, distance = 0.82 um
17-03-17 21:47:59.088 -07 000000610 INF: FPGA: Xmit ZDACW 28808\n [Z Motor]
17-03-17 21:47:59.088 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:47:59.098 -07 000000610 INF: FPGA: 'ZDACW 28808' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:47:59.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:47:59.098 -07 000000608 INF: FPGA: Recv ZDACR 28808
17-03-17 21:47:59.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:47:59.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.258 -07 000000627 INF: FPGA: Recv ZSGSRD 29821
17-03-17 21:47:59.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:47:59.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29823
17-03-17 21:47:59.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29818
17-03-17 21:47:59.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29821
17-03-17 21:47:59.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.298 -07 000000512 INF: FPGA: Recv ZSGSRD 29817
17-03-17 21:47:59.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.308 -07 000000480 INF: FPGA: Recv ZSGSRD 29810
17-03-17 21:47:59.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.318 -07 000000431 INF: FPGA: Recv ZSGSRD 29819
17-03-17 21:47:59.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.328 -07 000000476 INF: FPGA: Recv ZSGSRD 29821
17-03-17 21:47:59.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.338 -07 000000429 INF: FPGA: Recv ZSGSRD 29818
17-03-17 21:47:59.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:47:59.348 -07 000000608 INF: FPGA: Recv ZSGSRD 29824
17-03-17 21:47:59.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:47:59.358 -07 000000627 INF: FPGA: Recv ZPIEZORD 25551
17-03-17 21:47:59.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:47:59.368 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.4 V.
17-03-17 21:47:59.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29819 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29820 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29810 (-131.0 uncal um), Max = 29824 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:47:59.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29819, posNoise = 5, negNoise = 9
17-03-17 21:47:59.368 -07 000000610 INF: Z Motor: After move to -0.131875, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:47:59.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:47:59.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:47:59.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:47:59.368 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:47:59.368 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:47:59.368 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:47:59.368 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:47:59.368 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:47:59.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:47:59.368 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:47:59.368 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:47:59.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:47:59.368 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:47:59.378 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:47:59.378 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:47:59.378 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:47:59.378 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:47:59.388 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:47:59.388 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:47:59.388 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:47:59.398 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:47:59.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28985 150\n [Camera]
17-03-17 21:47:59.598 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:00.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 633
17-03-17 21:48:00.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 633
17-03-17 21:48:00.038 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:00.038 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:00.038 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:48:00.038 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 633
17-03-17 21:48:00.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 633
17-03-17 21:48:00.038 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:00.038 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:00.038 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:48:00.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28985 823
17-03-17 21:48:00.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:00.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:48:00.418 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:48:00.418 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:00.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:00.428 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:48:00.428 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:48:00.428 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:48:00.428 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:00.428 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:00.438 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:48:00.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:00.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:00.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:00.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:00.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:48:00.588 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:00.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:00.588 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:00.588 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:00.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:48:00.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:48:00.778 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:00.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28985 150' command took 2 ms to send, 1375 ms to get response, and 1383 ms overall
17-03-17 21:48:00.778 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.132201
17-03-17 21:48:00.778 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13220 mm
17-03-17 21:48:00.778 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:00.788 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:48:00.788 -07 000000547 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 21:48:00.788 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:00.788 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28879, sync = True, waitForSettling = False)
17-03-17 21:48:00.788 -07 000000476 INF: Z Motor: Moving to -0.132200 mm, started at -0.131887 mm, distance = -0.31 um
17-03-17 21:48:00.788 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:48:00.798 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:00.798 -07 000000547 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:00.798 -07 000000476 INF: FPGA: Xmit ZDACW 28879\n [Z Motor]
17-03-17 21:48:00.798 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:48:00.798 -07 000000547 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:00.798 -07 000000547 INF: Y Motor: Moving 1341 steps-18
17-03-17 21:48:00.808 -07 000000476 INF: FPGA: 'ZDACW 28879' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:48:00.808 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:00.808 -07 000000608 INF: FPGA: Recv ZDACR 28879
17-03-17 21:48:00.818 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:00.818 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:00.818 -07 000000476 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:48:00.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:48:00.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:48:00.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:00.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:48:00.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:48:00.968 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:00.978 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:00.978 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:00.978 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:48:00.978 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:48:01.188 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:48:01.188 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:48:01.228 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:01.238 -07 000000476 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:48:01.238 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:01.238 -07 000000547 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:01.238 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:48:01.238 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-17 21:48:01.908 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:01.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:02.188 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:02.188 -07 000000627 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:48:02.198 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.198 -07 000000547 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:02.218 -07 000000547 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:02.218 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:02.218 -07 000000547 INF: Y Motor: Moved to 66.5391 after 1434 ms (table move)
17-03-17 21:48:02.218 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132200 mm (DAC = 28879)
17-03-17 21:48:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.228 -07 000000012 INF: FPGA: Recv ZSGSRD 29875
17-03-17 21:48:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:48:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29859
17-03-17 21:48:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.238 -07 000000382 INF: FPGA: Recv ZSGSRD 29874
17-03-17 21:48:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29880
17-03-17 21:48:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29871
17-03-17 21:48:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.268 -07 000000512 INF: FPGA: Recv ZSGSRD 29871
17-03-17 21:48:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.278 -07 000000476 INF: FPGA: Recv ZSGSRD 29862
17-03-17 21:48:02.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.288 -07 000000547 INF: FPGA: Recv ZSGSRD 29868
17-03-17 21:48:02.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.298 -07 000000626 INF: FPGA: Recv ZSGSRD 29867
17-03-17 21:48:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29864
17-03-17 21:48:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:02.318 -07 000000512 INF: FPGA: Recv ZPIEZORD 25639
17-03-17 21:48:02.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.328 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.3 V.
17-03-17 21:48:02.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29869 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29859 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:48:02.328 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29869, posNoise = 11, negNoise = 10
17-03-17 21:48:02.328 -07 000000610 INF: Z Motor: After move to -0.132200, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:02.328 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:48:02.328 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:02.378 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:48:02.378 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:02.378 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.132208144473393. ----------
17-03-17 21:48:02.378 -07 000000610 INF: Cycle	55	Tile	9	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:02.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28703, sync = True, waitForSettling = True)
17-03-17 21:48:02.378 -07 000000610 INF: Z Motor: Moving to -0.131394 mm, started at -0.132208 mm, distance = 0.81 um
17-03-17 21:48:02.378 -07 000000610 INF: FPGA: Xmit ZDACW 28703\n [Z Motor]
17-03-17 21:48:02.378 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:48:02.388 -07 000000610 INF: FPGA: 'ZDACW 28703' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:02.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:02.388 -07 000000382 INF: FPGA: Recv ZDACR 28703
17-03-17 21:48:02.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:02.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.548 -07 000000431 INF: FPGA: Recv ZSGSRD 29742
17-03-17 21:48:02.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:02.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.558 -07 000000608 INF: FPGA: Recv ZSGSRD 29747
17-03-17 21:48:02.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.568 -07 000000429 INF: FPGA: Recv ZSGSRD 29744
17-03-17 21:48:02.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29741
17-03-17 21:48:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.588 -07 000000012 INF: FPGA: Recv ZSGSRD 29740
17-03-17 21:48:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.598 -07 000000438 INF: FPGA: Recv ZSGSRD 29742
17-03-17 21:48:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29748
17-03-17 21:48:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.618 -07 000000459 INF: FPGA: Recv ZSGSRD 29739
17-03-17 21:48:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.628 -07 000000424 INF: FPGA: Recv ZSGSRD 29738
17-03-17 21:48:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:02.638 -07 000000480 INF: FPGA: Recv ZSGSRD 29746
17-03-17 21:48:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:02.648 -07 000000627 INF: FPGA: Recv ZPIEZORD 25464
17-03-17 21:48:02.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:02.658 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -9.4 V.
17-03-17 21:48:02.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29743 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29742 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29738 (-130.6 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:48:02.658 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29743, posNoise = 5, negNoise = 5
17-03-17 21:48:02.658 -07 000000610 INF: Z Motor: After move to -0.131394, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:02.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:48:02.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:02.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:02.658 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:02.658 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:02.658 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:02.658 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:02.658 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:02.658 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:02.658 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:02.658 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:02.658 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:02.658 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:02.668 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:02.668 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:02.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:02.668 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:02.678 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 21:48:02.678 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:02.688 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:48:02.688 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:48:02.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28879 150\n [Camera]
17-03-17 21:48:02.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:03.328 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:03.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:03.328 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:03.328 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:03.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:48:03.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:03.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:03.328 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:03.328 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:03.328 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:48:03.398 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.973092,
17-03-17 21:48:03.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28879 823
17-03-17 21:48:03.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:03.698 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:48:03.698 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:48:03.698 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:03.698 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:48:03.698 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:48:03.698 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:03.708 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:03.708 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:03.708 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:48:03.718 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:48:03.878 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:03.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:03.878 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:03.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:03.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:48:03.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:03.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:03.878 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:03.878 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:03.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:48:04.068 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:48:04.068 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:04.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28879 150' command took 2 ms to send, 1376 ms to get response, and 1383 ms overall
17-03-17 21:48:04.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:48:04.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.131398693743531. ------
17-03-17 21:48:04.078 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13816 mm
17-03-17 21:48:04.078 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:04.078 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:04.078 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30181, sync = True, waitForSettling = False)
17-03-17 21:48:04.078 -07 000000501 INF: Z Motor: Moving to -0.138160 mm, started at -0.131399 mm, distance = -6.76 um
17-03-17 21:48:04.078 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:48:04.078 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 21:48:04.078 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:04.088 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:48:04.088 -07 000000501 INF: FPGA: Xmit ZDACW 30181\n [Z Motor]
17-03-17 21:48:04.088 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:48:04.098 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:04.098 -07 000000501 INF: FPGA: 'ZDACW 30181' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:48:04.098 -07 000000438 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:48:04.108 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:48:04.108 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:48:04.108 -07 000000576 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:04.108 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:04.108 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:48:04.118 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:04.118 -07 000000438 INF: FPGA: Recv ZDACR 30181
17-03-17 21:48:04.128 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:04.128 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:48:04.128 -07 000000501 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:48:04.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:48:04.258 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:48:04.258 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:04.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:48:04.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:48:04.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:04.268 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:04.268 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:04.268 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:48:04.268 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:48:04.308 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:48:04.308 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:48:04.498 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:48:04.498 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:48:04.538 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:04.548 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:48:04.548 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:04.548 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:04.548 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:48:04.548 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 21:48:05.498 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:05.498 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:48:05.508 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.508 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:05.528 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:05.528 -07 000000576 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:05.528 -07 000000576 INF: Y Motor: Moved to 67.3721 after 1445 ms (table move)
17-03-17 21:48:05.528 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138160 mm (DAC = 30181)
17-03-17 21:48:05.528 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.538 -07 000000627 INF: FPGA: Recv ZSGSRD 30795
17-03-17 21:48:05.538 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:48:05.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.538 -07 000000012 INF: FPGA: Recv ZSGSRD 30787
17-03-17 21:48:05.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:48:05.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.548 -07 000000438 INF: FPGA: Recv ZSGSRD 30797
17-03-17 21:48:05.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.558 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.558 -07 000000459 INF: FPGA: Recv ZSGSRD 30802
17-03-17 21:48:05.568 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30799
17-03-17 21:48:05.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.578 -07 000000501 INF: FPGA: Recv ZSGSRD 30801
17-03-17 21:48:05.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.588 -07 000000480 INF: FPGA: Recv ZSGSRD 30799
17-03-17 21:48:05.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.598 -07 000000476 INF: FPGA: Recv ZSGSRD 30796
17-03-17 21:48:05.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.608 -07 000000458 INF: FPGA: Recv ZSGSRD 30791
17-03-17 21:48:05.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:05.618 -07 000000382 INF: FPGA: Recv ZSGSRD 30792
17-03-17 21:48:05.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.628 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:05.628 -07 000000415 INF: FPGA: Recv ZPIEZORD 26879
17-03-17 21:48:05.638 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:05.638 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.605 V. Piezo Error = -8.6 V.
17-03-17 21:48:05.638 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30796 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30796 (-137.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30787 (-137.3 uncal um), Max = 30802 (-137.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:48:05.638 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30796, posNoise = 6, negNoise = 9
17-03-17 21:48:05.638 -07 000000626 INF: Z Motor: After move to -0.138160, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:05.638 -07 000000626 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:48:05.638 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:05.688 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:48:05.688 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:05.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:05.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:05.688 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:05.688 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:05.688 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:48:05.688 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:05.688 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:05.698 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:48:05.698 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:05.698 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:48:05.708 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:48:05.708 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:48:05.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:48:05.758 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:48:05.958 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:48:05.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:48:05.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:48:05.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:48:05.998 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:48:05.998 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:48:05.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:48:06.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:48:06.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:06.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:48:06.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:48:06.098 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:06.098 -07 000000012 INF: Autofocus start
17-03-17 21:48:06.098 -07 000000012 INF: MeasureProfile start
17-03-17 21:48:06.098 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:06.108 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:06.108 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:48:06.108 -07 000000012 INF: MeasureProfile done
17-03-17 21:48:06.108 -07 000000012 INF: X=-96  Z correction [um]=-0.4707136
17-03-17 21:48:06.108 -07 000000012 INF: Autofocus finished
17-03-17 21:48:06.308 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:48:06.308 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:48:06.318 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.138163389128805. ----------
17-03-17 21:48:06.318 -07 000000610 INF: Cycle	55	Tile	10	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:06.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28591, sync = True, waitForSettling = True)
17-03-17 21:48:06.318 -07 000000610 INF: Z Motor: Moving to -0.130881 mm, started at -0.138163 mm, distance = 7.28 um
17-03-17 21:48:06.318 -07 000000610 INF: FPGA: Xmit ZDACW 28591\n [Z Motor]
17-03-17 21:48:06.318 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:48:06.328 -07 000000610 INF: FPGA: 'ZDACW 28591' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:06.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:06.328 -07 000000480 INF: FPGA: Recv ZDACR 28591
17-03-17 21:48:06.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:06.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29665
17-03-17 21:48:06.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:06.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.498 -07 000000626 INF: FPGA: Recv ZSGSRD 29664
17-03-17 21:48:06.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.508 -07 000000415 INF: FPGA: Recv ZSGSRD 29665
17-03-17 21:48:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29666
17-03-17 21:48:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.528 -07 000000458 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:48:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.538 -07 000000438 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:48:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:48:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.558 -07 000000547 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:48:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.568 -07 000000569 INF: FPGA: Recv ZSGSRD 29660
17-03-17 21:48:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:06.578 -07 000000458 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:48:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:06.588 -07 000000627 INF: FPGA: Recv ZPIEZORD 25407
17-03-17 21:48:06.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:06.598 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.4 V.
17-03-17 21:48:06.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29664 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29664 (-130.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29660 (-130.1 uncal um), Max = 29667 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:48:06.598 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29664, posNoise = 3, negNoise = 4
17-03-17 21:48:06.598 -07 000000610 INF: Z Motor: After move to -0.130881, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:06.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:48:06.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:06.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:06.598 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:06.598 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:06.598 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:06.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:06.598 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:06.598 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:06.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:06.598 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:06.598 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:06.598 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:06.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:06.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:06.608 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:06.608 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:06.618 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:48:06.618 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:48:06.618 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:48:06.618 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:48:06.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28768 150\n [Camera]
17-03-17 21:48:06.818 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:06.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:06.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:07.258 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:07.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:07.258 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:07.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:07.258 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:07.258 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:07.258 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:48:07.258 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:07.258 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:07.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:48:07.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28768 823
17-03-17 21:48:07.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:07.638 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:48:07.638 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:48:07.638 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:07.648 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:07.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:48:07.648 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:48:07.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:07.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:07.648 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:48:07.648 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:48:07.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:07.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:07.808 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:07.938 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:07.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:07.938 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:07.938 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:07.938 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:48:07.948 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:07.948 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:48:07.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:48:07.998 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:07.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28768 150' command took 2 ms to send, 1377 ms to get response, and 1383 ms overall
17-03-17 21:48:07.998 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131410
17-03-17 21:48:07.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13141 mm
17-03-17 21:48:07.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:08.008 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28706, sync = True, waitForSettling = False)
17-03-17 21:48:08.008 -07 000000424 INF: Z Motor: Moving to -0.131408 mm, started at -0.130891 mm, distance = -0.52 um
17-03-17 21:48:08.008 -07 000000424 INF: FPGA: Xmit ZDACW 28706\n [Z Motor]
17-03-17 21:48:08.008 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:48:08.008 -07 000000458 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 21:48:08.008 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:48:08.018 -07 000000424 INF: FPGA: 'ZDACW 28706' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:48:08.018 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:08.018 -07 000000480 INF: FPGA: Recv ZDACR 28706
17-03-17 21:48:08.028 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:08.028 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:08.028 -07 000000424 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-17 21:48:08.028 -07 000000501 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:48:08.038 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:48:08.038 -07 000000458 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:08.038 -07 000000458 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:08.038 -07 000000458 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:48:08.038 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:08.318 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:48:08.328 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:48:08.328 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:08.328 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:48:08.328 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:48:08.328 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:08.328 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:08.328 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 21:48:08.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:08.338 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:48:08.418 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:48:08.418 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 380 ms overall
17-03-17 21:48:08.458 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:08.458 -07 000000382 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:48:08.468 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:48:08.468 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:08.468 -07 000000458 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:48:08.468 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.841 mm, average velocity = 2.212 mm/sec
17-03-17 21:48:08.768 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.98264,
17-03-17 21:48:09.418 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:09.418 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:48:09.428 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:09.428 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:09.448 -07 000000458 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:09.448 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:09.448 -07 000000458 INF: Y Motor: Moved to 68.2051 after 1439 ms (table move)
17-03-17 21:48:09.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131408 mm (DAC = 28706)
17-03-17 21:48:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.448 -07 000000415 INF: FPGA: Recv ZSGSRD 29738
17-03-17 21:48:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.458 -07 000000431 INF: FPGA: Recv ZSGSRD 29748
17-03-17 21:48:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.468 -07 000000424 INF: FPGA: Recv ZSGSRD 29746
17-03-17 21:48:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29749
17-03-17 21:48:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29748
17-03-17 21:48:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.498 -07 000000608 INF: FPGA: Recv ZSGSRD 29740
17-03-17 21:48:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.508 -07 000000429 INF: FPGA: Recv ZSGSRD 29746
17-03-17 21:48:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.518 -07 000000438 INF: FPGA: Recv ZSGSRD 29742
17-03-17 21:48:09.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.528 -07 000000627 INF: FPGA: Recv ZSGSRD 29745
17-03-17 21:48:09.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.538 -07 000000012 INF: FPGA: Recv ZSGSRD 29747
17-03-17 21:48:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:09.548 -07 000000576 INF: FPGA: Recv ZPIEZORD 25508
17-03-17 21:48:09.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.558 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.380 V. Piezo Error = -9.3 V.
17-03-17 21:48:09.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29745 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29746 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29738 (-130.6 uncal um), Max = 29749 (-130.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:48:09.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29745, posNoise = 4, negNoise = 7
17-03-17 21:48:09.558 -07 000000610 INF: Z Motor: After move to -0.131408, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:09.558 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:48:09.558 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:09.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:48:09.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:09.608 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.131411542167815. ----------
17-03-17 21:48:09.608 -07 000000610 INF: Cycle	55	Tile	11	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:09.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28530, sync = True, waitForSettling = True)
17-03-17 21:48:09.608 -07 000000610 INF: Z Motor: Moving to -0.130602 mm, started at -0.131412 mm, distance = 0.81 um
17-03-17 21:48:09.608 -07 000000610 INF: FPGA: Xmit ZDACW 28530\n [Z Motor]
17-03-17 21:48:09.608 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:48:09.618 -07 000000610 INF: FPGA: 'ZDACW 28530' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:48:09.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:09.618 -07 000000608 INF: FPGA: Recv ZDACR 28530
17-03-17 21:48:09.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29628
17-03-17 21:48:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29623
17-03-17 21:48:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.798 -07 000000569 INF: FPGA: Recv ZSGSRD 29624
17-03-17 21:48:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29618
17-03-17 21:48:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.818 -07 000000012 INF: FPGA: Recv ZSGSRD 29613
17-03-17 21:48:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.828 -07 000000576 INF: FPGA: Recv ZSGSRD 29623
17-03-17 21:48:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29618
17-03-17 21:48:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.848 -07 000000569 INF: FPGA: Recv ZSGSRD 29620
17-03-17 21:48:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.858 -07 000000475 INF: FPGA: Recv ZSGSRD 29622
17-03-17 21:48:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:09.868 -07 000000429 INF: FPGA: Recv ZSGSRD 29618
17-03-17 21:48:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:09.878 -07 000000459 INF: FPGA: Recv ZPIEZORD 25338
17-03-17 21:48:09.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:09.888 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.4 V.
17-03-17 21:48:09.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29621 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29613 (-129.8 uncal um), Max = 29628 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:48:09.888 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 7, negNoise = 8
17-03-17 21:48:09.888 -07 000000610 INF: Z Motor: After move to -0.130602, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:09.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:48:09.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:09.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:09.888 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:09.888 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:09.888 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:09.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:09.888 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:09.888 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:09.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:09.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:09.888 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:09.888 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:09.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:09.888 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:09.898 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:09.898 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:09.908 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:48:09.908 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:48:09.908 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 21:48:09.908 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:48:09.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28706 150\n [Camera]
17-03-17 21:48:10.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:10.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:10.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:10.558 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:10.558 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:10.558 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:48:10.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:10.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:10.558 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:10.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:10.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:48:10.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28706 823
17-03-17 21:48:10.898 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:10.928 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:48:10.928 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:48:10.928 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:10.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:48:10.928 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:48:10.928 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:10.938 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:10.938 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:48:10.938 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:10.948 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:48:11.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:11.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:11.108 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:11.108 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:11.108 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 21:48:11.108 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:11.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:11.108 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:11.238 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:11.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:48:11.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:48:11.298 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:11.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28706 150' command took 2 ms to send, 1374 ms to get response, and 1383 ms overall
17-03-17 21:48:11.298 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131267
17-03-17 21:48:11.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13127 mm
17-03-17 21:48:11.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:11.298 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:48:11.298 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 21:48:11.298 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:11.298 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28675, sync = True, waitForSettling = False)
17-03-17 21:48:11.298 -07 000000438 INF: Z Motor: Moving to -0.131266 mm, started at -0.130615 mm, distance = -0.65 um
17-03-17 21:48:11.308 -07 000000438 INF: FPGA: Xmit ZDACW 28675\n [Z Motor]
17-03-17 21:48:11.308 -07 000000476 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:48:11.308 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:48:11.308 -07 000000480 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:11.308 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:11.308 -07 000000480 INF: Y Motor: Moving 1340 steps-15
17-03-17 21:48:11.308 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:48:11.318 -07 000000438 INF: FPGA: 'ZDACW 28675' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:11.318 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:11.318 -07 000000431 INF: FPGA: Recv ZDACR 28675
17-03-17 21:48:11.328 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:11.328 -07 000000438 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:48:11.328 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:11.498 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:48:11.498 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:48:11.498 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:11.498 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:11.498 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:48:11.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:48:11.618 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:48:11.618 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:11.618 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:11.628 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 21:48:11.698 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:48:11.698 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 21:48:11.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:11.748 -07 000000512 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:48:11.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:11.748 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:11.748 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:48:11.748 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.838 mm, average velocity = 2.115 mm/sec
17-03-17 21:48:11.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:11.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:12.698 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:12.698 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:48:12.708 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:12.708 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:12.728 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:12.728 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:12.728 -07 000000480 INF: Y Motor: Moved to 69.0273 after 1424 ms (table move)
17-03-17 21:48:12.728 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131266 mm (DAC = 28675)
17-03-17 21:48:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.728 -07 000000012 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:48:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.738 -07 000000475 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:48:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:48:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.758 -07 000000626 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:48:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29727
17-03-17 21:48:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.778 -07 000000608 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:48:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.788 -07 000000576 INF: FPGA: Recv ZSGSRD 29722
17-03-17 21:48:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.798 -07 000000415 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:48:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.808 -07 000000012 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:48:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:12.818 -07 000000458 INF: FPGA: Recv ZSGSRD 29724
17-03-17 21:48:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:12.828 -07 000000429 INF: FPGA: Recv ZPIEZORD 25496
17-03-17 21:48:12.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.838 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.3 V.
17-03-17 21:48:12.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29721 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29719 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29727 (-130.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:48:12.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29721, posNoise = 6, negNoise = 6
17-03-17 21:48:12.838 -07 000000610 INF: Z Motor: After move to -0.131266, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:12.838 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 104 ms (allowed 150 ms), total time = 1530 ms
17-03-17 21:48:12.838 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:12.888 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:48:12.888 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:12.888 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.131257361076412. ----------
17-03-17 21:48:12.888 -07 000000610 INF: Cycle	55	Tile	12	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:12.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28499, sync = True, waitForSettling = True)
17-03-17 21:48:12.888 -07 000000610 INF: Z Motor: Moving to -0.130460 mm, started at -0.131257 mm, distance = 0.80 um
17-03-17 21:48:12.888 -07 000000610 INF: FPGA: Xmit ZDACW 28499\n [Z Motor]
17-03-17 21:48:12.888 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:48:12.898 -07 000000610 INF: FPGA: 'ZDACW 28499' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:12.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:12.898 -07 000000382 INF: FPGA: Recv ZDACR 28499
17-03-17 21:48:12.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:12.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.058 -07 000000476 INF: FPGA: Recv ZSGSRD 29599
17-03-17 21:48:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:13.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.068 -07 000000480 INF: FPGA: Recv ZSGSRD 29603
17-03-17 21:48:13.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.078 -07 000000012 INF: FPGA: Recv ZSGSRD 29605
17-03-17 21:48:13.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.088 -07 000000458 INF: FPGA: Recv ZSGSRD 29597
17-03-17 21:48:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.098 -07 000000501 INF: FPGA: Recv ZSGSRD 29604
17-03-17 21:48:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:13.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29599
17-03-17 21:48:13.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.118 -07 000000627 INF: FPGA: Recv ZSGSRD 29597
17-03-17 21:48:13.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29594
17-03-17 21:48:13.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.138 -07 000000476 INF: FPGA: Recv ZSGSRD 29593
17-03-17 21:48:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:13.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29600
17-03-17 21:48:13.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:13.158 -07 000000012 INF: FPGA: Recv ZPIEZORD 25327
17-03-17 21:48:13.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:13.168 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.4 V.
17-03-17 21:48:13.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29599 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29599 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29593 (-129.7 uncal um), Max = 29605 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:48:13.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29599, posNoise = 6, negNoise = 6
17-03-17 21:48:13.168 -07 000000610 INF: Z Motor: After move to -0.130460, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:13.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:48:13.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:13.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:13.168 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:13.168 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:13.168 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:13.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:13.168 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:13.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:13.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:13.168 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:13.168 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:13.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:13.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:48:13.178 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:13.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:48:13.178 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:13.188 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:48:13.188 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:13.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:48:13.188 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:13.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28675 150\n [Camera]
17-03-17 21:48:13.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:13.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:13.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:13.828 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:13.828 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:13.828 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:48:13.838 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:13.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:13.838 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:13.838 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:13.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:48:14.028 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28675 823
17-03-17 21:48:14.138 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.003063,
17-03-17 21:48:14.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:14.208 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:48:14.208 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:48:14.208 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:14.208 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:48:14.208 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:48:14.208 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:14.208 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:14.218 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:14.218 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:48:14.218 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:48:14.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:14.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:14.388 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:14.388 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:14.388 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:48:14.388 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:14.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:14.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:14.388 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:14.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:48:14.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:48:14.578 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:14.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28675 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall
17-03-17 21:48:14.578 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130873
17-03-17 21:48:14.578 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13087 mm
17-03-17 21:48:14.578 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:14.578 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:48:14.578 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 21:48:14.578 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:14.578 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28589, sync = True, waitForSettling = False)
17-03-17 21:48:14.578 -07 000000576 INF: Z Motor: Moving to -0.130872 mm, started at -0.130474 mm, distance = -0.40 um
17-03-17 21:48:14.588 -07 000000576 INF: FPGA: Xmit ZDACW 28589\n [Z Motor]
17-03-17 21:48:14.588 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:48:14.588 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:48:14.588 -07 000000429 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:14.588 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:14.588 -07 000000429 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:48:14.588 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:48:14.598 -07 000000576 INF: FPGA: 'ZDACW 28589' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:14.598 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:14.598 -07 000000382 INF: FPGA: Recv ZDACR 28589
17-03-17 21:48:14.608 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:14.608 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:14.608 -07 000000576 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:48:14.778 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:48:14.778 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:48:14.778 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:14.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:48:14.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:48:14.778 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:14.778 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:14.778 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:48:14.778 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:14.788 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:48:14.978 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:48:14.978 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:48:15.018 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:15.018 -07 000000438 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:48:15.028 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:15.028 -07 000000429 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:15.028 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:48:15.028 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.135 mm/sec
17-03-17 21:48:15.978 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:15.978 -07 000000475 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:48:15.988 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:15.988 -07 000000429 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:16.008 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:16.008 -07 000000429 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:16.008 -07 000000429 INF: Y Motor: Moved to 69.8633 after 1424 ms (table move)
17-03-17 21:48:16.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130872 mm (DAC = 28589)
17-03-17 21:48:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.008 -07 000000415 INF: FPGA: Recv ZSGSRD 29660
17-03-17 21:48:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.018 -07 000000012 INF: FPGA: Recv ZSGSRD 29665
17-03-17 21:48:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29658
17-03-17 21:48:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29654
17-03-17 21:48:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.048 -07 000000382 INF: FPGA: Recv ZSGSRD 29666
17-03-17 21:48:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.058 -07 000000415 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:48:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.068 -07 000000626 INF: FPGA: Recv ZSGSRD 29662
17-03-17 21:48:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29657
17-03-17 21:48:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.088 -07 000000476 INF: FPGA: Recv ZSGSRD 29664
17-03-17 21:48:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:48:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:16.108 -07 000000576 INF: FPGA: Recv ZPIEZORD 25429
17-03-17 21:48:16.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.118 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.3 V.
17-03-17 21:48:16.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29661 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29662 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29654 (-130.0 uncal um), Max = 29667 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:48:16.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29661, posNoise = 6, negNoise = 7
17-03-17 21:48:16.118 -07 000000610 INF: Z Motor: After move to -0.130872, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:16.118 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 105 ms (allowed 150 ms), total time = 1530 ms
17-03-17 21:48:16.118 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:16.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:48:16.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:16.168 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130871908347907. ----------
17-03-17 21:48:16.168 -07 000000610 INF: Cycle	55	Tile	13	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:16.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28412, sync = True, waitForSettling = True)
17-03-17 21:48:16.168 -07 000000610 INF: Z Motor: Moving to -0.130062 mm, started at -0.130872 mm, distance = 0.81 um
17-03-17 21:48:16.168 -07 000000610 INF: FPGA: Xmit ZDACW 28412\n [Z Motor]
17-03-17 21:48:16.168 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:48:16.178 -07 000000610 INF: FPGA: 'ZDACW 28412' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:16.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:16.178 -07 000000512 INF: FPGA: Recv ZDACR 28412
17-03-17 21:48:16.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.338 -07 000000501 INF: FPGA: Recv ZSGSRD 29529
17-03-17 21:48:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29537
17-03-17 21:48:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.358 -07 000000476 INF: FPGA: Recv ZSGSRD 29542
17-03-17 21:48:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.368 -07 000000501 INF: FPGA: Recv ZSGSRD 29536
17-03-17 21:48:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.378 -07 000000576 INF: FPGA: Recv ZSGSRD 29537
17-03-17 21:48:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.388 -07 000000415 INF: FPGA: Recv ZSGSRD 29530
17-03-17 21:48:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.398 -07 000000608 INF: FPGA: Recv ZSGSRD 29535
17-03-17 21:48:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.408 -07 000000512 INF: FPGA: Recv ZSGSRD 29539
17-03-17 21:48:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.418 -07 000000382 INF: FPGA: Recv ZSGSRD 29536
17-03-17 21:48:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:16.428 -07 000000431 INF: FPGA: Recv ZSGSRD 29539
17-03-17 21:48:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:16.438 -07 000000476 INF: FPGA: Recv ZPIEZORD 25240
17-03-17 21:48:16.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:16.448 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.335 V. Piezo Error = -9.4 V.
17-03-17 21:48:16.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29536 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29536 (-129.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29529 (-129.2 uncal um), Max = 29542 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:48:16.448 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29536, posNoise = 6, negNoise = 7
17-03-17 21:48:16.448 -07 000000610 INF: Z Motor: After move to -0.130062, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:16.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:48:16.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:16.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:16.448 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:16.448 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:16.448 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:16.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:16.448 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:16.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:16.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:16.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:16.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:16.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:16.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:16.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:16.458 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:16.458 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:16.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:48:16.468 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:16.468 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:48:16.468 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:16.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28589 150\n [Camera]
17-03-17 21:48:16.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:16.908 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:16.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:17.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:17.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:17.108 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:17.108 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:17.108 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:48:17.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:17.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:17.118 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:17.118 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:17.118 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:48:17.308 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28589 823
17-03-17 21:48:17.448 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:17.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:48:17.508 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:48:17.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:17.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:48:17.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:48:17.508 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:17.508 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:17.508 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:48:17.508 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:17.518 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:48:17.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:17.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:17.668 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:17.668 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:17.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:48:17.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:17.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:17.668 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:17.668 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:17.668 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:48:17.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:48:17.858 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:17.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28589 150' command took 2 ms to send, 1375 ms to get response, and 1385 ms overall
17-03-17 21:48:17.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:48:17.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130068881830187. ------
17-03-17 21:48:17.868 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:17.868 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13643 mm
17-03-17 21:48:17.868 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:17.868 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:17.868 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:48:17.868 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29804, sync = True, waitForSettling = False)
17-03-17 21:48:17.868 -07 000000576 INF: Z Motor: Moving to -0.136434 mm, started at -0.130069 mm, distance = -6.37 um
17-03-17 21:48:17.868 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:48:17.878 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:17.878 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:17.878 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:48:17.888 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:48:17.888 -07 000000576 INF: FPGA: Xmit ZDACW 29804\n [Z Motor]
17-03-17 21:48:17.888 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:17.888 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:17.888 -07 000000626 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:48:17.888 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:48:17.898 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:48:17.898 -07 000000576 INF: FPGA: 'ZDACW 29804' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:48:17.908 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:17.918 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:17.918 -07 000000512 INF: FPGA: Recv ZDACR 29804
17-03-17 21:48:17.928 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:48:17.928 -07 000000576 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:48:18.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:48:18.048 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:48:18.048 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:18.048 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:48:18.048 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:48:18.048 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:18.048 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:18.048 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:48:18.048 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:18.058 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:48:18.098 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:48:18.098 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:48:18.278 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:48:18.278 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:48:18.318 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:18.328 -07 000000459 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:48:18.328 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:48:18.328 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:18.328 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:48:18.328 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:48:19.278 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:19.278 -07 000000012 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:48:19.288 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.288 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:19.328 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:19.328 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:19.328 -07 000000626 INF: Y Motor: Moved to 70.6885 after 1460 ms (table move)
17-03-17 21:48:19.328 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136434 mm (DAC = 29804)
17-03-17 21:48:19.328 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.338 -07 000000424 INF: FPGA: Recv ZSGSRD 30526
17-03-17 21:48:19.338 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 21:48:19.338 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30527
17-03-17 21:48:19.348 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:48:19.348 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.348 -07 000000501 INF: FPGA: Recv ZSGSRD 30525
17-03-17 21:48:19.358 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:48:19.358 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.358 -07 000000415 INF: FPGA: Recv ZSGSRD 30533
17-03-17 21:48:19.368 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.368 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.368 -07 000000475 INF: FPGA: Recv ZSGSRD 30524
17-03-17 21:48:19.378 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.378 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30522
17-03-17 21:48:19.388 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.388 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.388 -07 000000431 INF: FPGA: Recv ZSGSRD 30516
17-03-17 21:48:19.398 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.398 -07 000000501 INF: FPGA: Recv ZSGSRD 30528
17-03-17 21:48:19.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.408 -07 000000512 INF: FPGA: Recv ZSGSRD 30530
17-03-17 21:48:19.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:19.418 -07 000000569 INF: FPGA: Recv ZSGSRD 30526
17-03-17 21:48:19.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.428 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:19.428 -07 000000576 INF: FPGA: Recv ZPIEZORD 26594
17-03-17 21:48:19.438 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:19.438 -07 000000458 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -8.7 V.
17-03-17 21:48:19.438 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30526 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30526 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30516 (-135.6 uncal um), Max = 30533 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:48:19.438 -07 000000458 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30526, posNoise = 7, negNoise = 10
17-03-17 21:48:19.438 -07 000000458 INF: Z Motor: After move to -0.136434, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:19.438 -07 000000458 INF: Z Motor: Settle wait time = 1465 ms, measure time = 101 ms (allowed 150 ms), total time = 1566 ms
17-03-17 21:48:19.438 -07 000000458 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:19.488 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 21:48:19.488 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:19.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:19.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:19.488 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:19.488 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:19.488 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:48:19.488 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:19.488 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:19.488 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:48:19.498 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:19.498 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:48:19.498 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:48:19.498 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:48:19.518 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.015368,
17-03-17 21:48:19.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:48:19.568 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:48:19.768 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:48:19.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:48:19.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:48:19.888 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:48:19.888 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:48:19.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 358 ms to get response, and 384 ms overall
17-03-17 21:48:19.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:48:20.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 21:48:20.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:20.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:48:20.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 248 ms.
17-03-17 21:48:20.088 -07 000000382 INF: Autofocus start
17-03-17 21:48:20.088 -07 000000382 INF: MeasureProfile start
17-03-17 21:48:20.088 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:20.088 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:20.098 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:48:20.098 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:48:20.098 -07 000000382 INF: MeasureProfile done
17-03-17 21:48:20.098 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:48:20.098 -07 000000382 INF: Autofocus finished
17-03-17 21:48:20.298 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:48:20.298 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 21:48:20.298 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.13642885185053. ----------
17-03-17 21:48:20.298 -07 000000610 INF: Cycle	55	Tile	14	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:20.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28328, sync = True, waitForSettling = True)
17-03-17 21:48:20.308 -07 000000610 INF: Z Motor: Moving to -0.129677 mm, started at -0.136429 mm, distance = 6.75 um
17-03-17 21:48:20.308 -07 000000610 INF: FPGA: Xmit ZDACW 28328\n [Z Motor]
17-03-17 21:48:20.308 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:48:20.318 -07 000000610 INF: FPGA: 'ZDACW 28328' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:20.318 -07 000000576 INF: FPGA: Recv ZDACR 28328
17-03-17 21:48:20.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:20.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.478 -07 000000480 INF: FPGA: Recv ZSGSRD 29477
17-03-17 21:48:20.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:20.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29474
17-03-17 21:48:20.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.498 -07 000000415 INF: FPGA: Recv ZSGSRD 29473
17-03-17 21:48:20.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29479
17-03-17 21:48:20.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.518 -07 000000458 INF: FPGA: Recv ZSGSRD 29473
17-03-17 21:48:20.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.528 -07 000000480 INF: FPGA: Recv ZSGSRD 29478
17-03-17 21:48:20.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29471
17-03-17 21:48:20.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.548 -07 000000438 INF: FPGA: Recv ZSGSRD 29471
17-03-17 21:48:20.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.558 -07 000000512 INF: FPGA: Recv ZSGSRD 29479
17-03-17 21:48:20.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:20.568 -07 000000627 INF: FPGA: Recv ZSGSRD 29470
17-03-17 21:48:20.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:20.578 -07 000000626 INF: FPGA: Recv ZPIEZORD 25158
17-03-17 21:48:20.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:20.588 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.5 V.
17-03-17 21:48:20.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29474 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29474 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29470 (-128.9 uncal um), Max = 29479 (-128.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:48:20.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29474, posNoise = 5, negNoise = 4
17-03-17 21:48:20.588 -07 000000610 INF: Z Motor: After move to -0.129677, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:20.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:48:20.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:20.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:20.588 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:20.588 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:20.588 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:20.588 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:20.588 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:20.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:20.588 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:20.588 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:20.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:20.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:20.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:20.598 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:20.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:20.598 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:20.608 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:48:20.608 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:48:20.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:48:20.608 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:20.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28505 150\n [Camera]
17-03-17 21:48:20.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:21.248 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:21.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:21.248 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:21.248 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:21.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:48:21.258 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:21.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:21.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:21.258 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:21.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:48:21.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28505 826
17-03-17 21:48:21.598 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:21.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:48:21.628 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:48:21.628 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:21.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:48:21.628 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:48:21.628 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:21.638 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:21.638 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:48:21.638 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:21.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:48:21.808 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:21.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:21.808 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:21.808 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:21.808 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 21:48:21.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:21.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:21.808 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:21.918 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:21.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:21.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:48:21.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:48:21.998 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:21.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28505 150' command took 2 ms to send, 1373 ms to get response, and 1383 ms overall
17-03-17 21:48:21.998 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129901
17-03-17 21:48:21.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12990 mm
17-03-17 21:48:21.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:21.998 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:48:21.998 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 21:48:21.998 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:21.998 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 28377, sync = True, waitForSettling = False)
17-03-17 21:48:21.998 -07 000000382 INF: Z Motor: Moving to -0.129902 mm, started at -0.129671 mm, distance = -0.23 um
17-03-17 21:48:22.008 -07 000000382 INF: FPGA: Xmit ZDACW 28377\n [Z Motor]
17-03-17 21:48:22.008 -07 000000459 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:48:22.008 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:48:22.008 -07 000000569 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:22.008 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:48:22.008 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:22.008 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:48:22.018 -07 000000382 INF: FPGA: 'ZDACW 28377' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:22.018 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:22.028 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:22.028 -07 000000431 INF: FPGA: Recv ZDACR 28377
17-03-17 21:48:22.038 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:48:22.038 -07 000000382 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 21:48:22.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:48:22.188 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:48:22.188 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:22.198 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:22.198 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:48:22.298 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:48:22.298 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:48:22.298 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:22.308 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:22.308 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 21:48:22.388 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:48:22.388 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 21:48:22.428 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:22.438 -07 000000627 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:48:22.438 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:48:22.438 -07 000000569 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:22.438 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:48:22.438 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.216 mm/sec
17-03-17 21:48:23.388 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:23.388 -07 000000431 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:48:23.398 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:23.398 -07 000000569 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:23.418 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:23.418 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:23.418 -07 000000569 INF: Y Motor: Moved to 71.5190 after 1414 ms (table move)
17-03-17 21:48:23.418 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129902 mm (DAC = 28377)
17-03-17 21:48:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.418 -07 000000476 INF: FPGA: Recv ZSGSRD 29512
17-03-17 21:48:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.428 -07 000000012 INF: FPGA: Recv ZSGSRD 29503
17-03-17 21:48:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.438 -07 000000480 INF: FPGA: Recv ZSGSRD 29505
17-03-17 21:48:23.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.448 -07 000000626 INF: FPGA: Recv ZSGSRD 29520
17-03-17 21:48:23.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.458 -07 000000501 INF: FPGA: Recv ZSGSRD 29516
17-03-17 21:48:23.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.468 -07 000000512 INF: FPGA: Recv ZSGSRD 29509
17-03-17 21:48:23.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29509
17-03-17 21:48:23.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.488 -07 000000415 INF: FPGA: Recv ZSGSRD 29509
17-03-17 21:48:23.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.498 -07 000000547 INF: FPGA: Recv ZSGSRD 29509
17-03-17 21:48:23.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29507
17-03-17 21:48:23.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:23.518 -07 000000627 INF: FPGA: Recv ZPIEZORD 25267
17-03-17 21:48:23.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.528 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.3 V.
17-03-17 21:48:23.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29510 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29509 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29503 (-129.1 uncal um), Max = 29520 (-129.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:48:23.528 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29510, posNoise = 10, negNoise = 7
17-03-17 21:48:23.528 -07 000000610 INF: Z Motor: After move to -0.129902, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:23.528 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 104 ms (allowed 150 ms), total time = 1521 ms
17-03-17 21:48:23.528 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:23.578 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 21:48:23.578 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:23.578 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129901852314501. ----------
17-03-17 21:48:23.578 -07 000000610 INF: Cycle	55	Tile	15	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:23.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28200, sync = True, waitForSettling = True)
17-03-17 21:48:23.578 -07 000000610 INF: Z Motor: Moving to -0.129091 mm, started at -0.129902 mm, distance = 0.81 um
17-03-17 21:48:23.578 -07 000000610 INF: FPGA: Xmit ZDACW 28200\n [Z Motor]
17-03-17 21:48:23.578 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:48:23.588 -07 000000610 INF: FPGA: 'ZDACW 28200' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:48:23.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:23.588 -07 000000431 INF: FPGA: Recv ZDACR 28200
17-03-17 21:48:23.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.748 -07 000000501 INF: FPGA: Recv ZSGSRD 29381
17-03-17 21:48:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.758 -07 000000480 INF: FPGA: Recv ZSGSRD 29384
17-03-17 21:48:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.768 -07 000000415 INF: FPGA: Recv ZSGSRD 29385
17-03-17 21:48:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.778 -07 000000547 INF: FPGA: Recv ZSGSRD 29390
17-03-17 21:48:23.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.788 -07 000000569 INF: FPGA: Recv ZSGSRD 29384
17-03-17 21:48:23.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29385
17-03-17 21:48:23.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.808 -07 000000429 INF: FPGA: Recv ZSGSRD 29393
17-03-17 21:48:23.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.818 -07 000000438 INF: FPGA: Recv ZSGSRD 29385
17-03-17 21:48:23.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.828 -07 000000458 INF: FPGA: Recv ZSGSRD 29383
17-03-17 21:48:23.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:23.838 -07 000000569 INF: FPGA: Recv ZSGSRD 29384
17-03-17 21:48:23.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:23.848 -07 000000012 INF: FPGA: Recv ZPIEZORD 25106
17-03-17 21:48:23.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:23.858 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.4 V.
17-03-17 21:48:23.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29385 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29384 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29381 (-128.3 uncal um), Max = 29393 (-128.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:48:23.858 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29385, posNoise = 8, negNoise = 4
17-03-17 21:48:23.858 -07 000000610 INF: Z Motor: After move to -0.129091, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:23.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:48:23.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:23.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:23.858 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:23.858 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:23.858 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:23.858 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:23.858 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:23.858 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:23.858 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:23.858 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:23.858 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:23.858 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:23.868 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:23.868 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:23.868 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:23.868 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:23.868 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:48:23.878 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:48:23.878 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:48:23.878 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:48:23.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28377 150\n [Camera]
17-03-17 21:48:24.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:24.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:24.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:24.518 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:24.518 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:24.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:48:24.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:24.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:24.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:24.518 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:24.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:48:24.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28377 823
17-03-17 21:48:24.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:24.888 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.005817,
17-03-17 21:48:24.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:48:24.898 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:48:24.898 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:24.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:48:24.898 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:48:24.898 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:24.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:24.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:48:24.908 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:24.918 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:48:25.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:25.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:25.068 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:25.068 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:25.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:48:25.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:25.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:25.068 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:25.068 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:25.068 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:48:25.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:48:25.258 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:25.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28377 150' command took 2 ms to send, 1377 ms to get response, and 1383 ms overall
17-03-17 21:48:25.258 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129364
17-03-17 21:48:25.258 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12936 mm
17-03-17 21:48:25.258 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:25.268 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 28259, sync = True, waitForSettling = False)
17-03-17 21:48:25.268 -07 000000429 INF: Z Motor: Moving to -0.129361 mm, started at -0.129099 mm, distance = -0.26 um
17-03-17 21:48:25.268 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:48:25.268 -07 000000459 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 21:48:25.278 -07 000000429 INF: FPGA: Xmit ZDACW 28259\n [Z Motor]
17-03-17 21:48:25.278 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:48:25.288 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:25.288 -07 000000429 INF: FPGA: 'ZDACW 28259' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:48:25.288 -07 000000576 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:48:25.298 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:48:25.298 -07 000000459 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:25.298 -07 000000459 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:25.298 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:48:25.308 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:25.308 -07 000000576 INF: FPGA: Recv ZDACR 28259
17-03-17 21:48:25.318 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:25.318 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:48:25.318 -07 000000429 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:48:25.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:48:25.448 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:48:25.448 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:25.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:48:25.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:48:25.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:25.458 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:25.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:25.458 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:48:25.458 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:48:25.688 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:48:25.688 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:48:25.728 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:25.728 -07 000000475 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:48:25.738 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:25.738 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:25.738 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:48:25.738 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 21:48:26.688 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:26.688 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:48:26.698 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:26.698 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:26.718 -07 000000459 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:26.718 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:26.718 -07 000000459 INF: Y Motor: Moved to 72.3496 after 1451 ms (table move)
17-03-17 21:48:26.718 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129361 mm (DAC = 28259)
17-03-17 21:48:26.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.718 -07 000000512 INF: FPGA: Recv ZSGSRD 29428
17-03-17 21:48:26.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.728 -07 000000458 INF: FPGA: Recv ZSGSRD 29423
17-03-17 21:48:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29424
17-03-17 21:48:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.748 -07 000000576 INF: FPGA: Recv ZSGSRD 29425
17-03-17 21:48:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.758 -07 000000476 INF: FPGA: Recv ZSGSRD 29432
17-03-17 21:48:26.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.768 -07 000000547 INF: FPGA: Recv ZSGSRD 29424
17-03-17 21:48:26.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29421
17-03-17 21:48:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.788 -07 000000415 INF: FPGA: Recv ZSGSRD 29426
17-03-17 21:48:26.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.798 -07 000000382 INF: FPGA: Recv ZSGSRD 29425
17-03-17 21:48:26.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:26.808 -07 000000626 INF: FPGA: Recv ZSGSRD 29429
17-03-17 21:48:26.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:26.818 -07 000000475 INF: FPGA: Recv ZPIEZORD 25181
17-03-17 21:48:26.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.828 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.312 V. Piezo Error = -9.3 V.
17-03-17 21:48:26.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29426 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29425 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29421 (-128.6 uncal um), Max = 29432 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:48:26.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29426, posNoise = 6, negNoise = 5
17-03-17 21:48:26.828 -07 000000610 INF: Z Motor: After move to -0.129361, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:26.828 -07 000000610 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-17 21:48:26.828 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:26.878 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:48:26.878 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:26.878 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.129362218494593. ----------
17-03-17 21:48:26.878 -07 000000610 INF: Cycle	55	Tile	16	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:26.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28083, sync = True, waitForSettling = True)
17-03-17 21:48:26.878 -07 000000610 INF: Z Motor: Moving to -0.128556 mm, started at -0.129362 mm, distance = 0.81 um
17-03-17 21:48:26.878 -07 000000610 INF: FPGA: Xmit ZDACW 28083\n [Z Motor]
17-03-17 21:48:26.878 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:48:26.888 -07 000000610 INF: FPGA: 'ZDACW 28083' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:26.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:26.888 -07 000000512 INF: FPGA: Recv ZDACR 28083
17-03-17 21:48:26.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:26.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:26.908 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:26.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.048 -07 000000458 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:48:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:27.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29307
17-03-17 21:48:27.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.068 -07 000000424 INF: FPGA: Recv ZSGSRD 29295
17-03-17 21:48:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.078 -07 000000569 INF: FPGA: Recv ZSGSRD 29301
17-03-17 21:48:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:48:27.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29300
17-03-17 21:48:27.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.108 -07 000000459 INF: FPGA: Recv ZSGSRD 29296
17-03-17 21:48:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29297
17-03-17 21:48:27.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.128 -07 000000627 INF: FPGA: Recv ZSGSRD 29304
17-03-17 21:48:27.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:27.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29302
17-03-17 21:48:27.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:27.148 -07 000000476 INF: FPGA: Recv ZPIEZORD 25014
17-03-17 21:48:27.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:27.158 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.4 V.
17-03-17 21:48:27.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29301 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29302 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29295 (-127.7 uncal um), Max = 29307 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:48:27.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29301, posNoise = 6, negNoise = 6
17-03-17 21:48:27.158 -07 000000610 INF: Z Motor: After move to -0.128556, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:27.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:48:27.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:27.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:27.158 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:27.158 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:27.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:27.158 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:27.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:27.158 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:27.158 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:48:27.158 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:27.158 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:27.158 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:27.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:27.168 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:27.168 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:27.168 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:27.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:48:27.178 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:48:27.178 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:48:27.178 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:48:27.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28259 150\n [Camera]
17-03-17 21:48:27.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:27.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:27.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:27.818 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:27.818 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:27.818 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:48:27.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:27.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:27.828 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:27.828 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:27.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:48:28.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28259 823
17-03-17 21:48:28.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:28.198 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:48:28.198 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:48:28.198 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:28.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:28.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:48:28.198 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:48:28.198 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:28.208 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:28.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:48:28.208 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:48:28.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:28.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:28.378 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:28.378 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:28.378 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:48:28.378 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:28.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:28.378 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:28.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:28.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:48:28.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1377
17-03-17 21:48:28.568 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:28.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28259 150' command took 2 ms to send, 1372 ms to get response, and 1384 ms overall
17-03-17 21:48:28.568 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129148
17-03-17 21:48:28.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12915 mm
17-03-17 21:48:28.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:28.568 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:48:28.568 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:48:28.568 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:28.568 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 28212, sync = True, waitForSettling = False)
17-03-17 21:48:28.568 -07 000000626 INF: Z Motor: Moving to -0.129146 mm, started at -0.128559 mm, distance = -0.59 um
17-03-17 21:48:28.578 -07 000000626 INF: FPGA: Xmit ZDACW 28212\n [Z Motor]
17-03-17 21:48:28.578 -07 000000608 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:48:28.578 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:28.578 -07 000000476 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:28.578 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:28.578 -07 000000476 INF: Y Motor: Moving 1349 steps-27
17-03-17 21:48:28.578 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:48:28.588 -07 000000626 INF: FPGA: 'ZDACW 28212' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:48:28.588 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:28.598 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:28.598 -07 000000458 INF: FPGA: Recv ZDACR 28212
17-03-17 21:48:28.608 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:48:28.608 -07 000000626 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 21:48:28.758 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:48:28.758 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:48:28.758 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:28.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:48:28.758 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:48:28.758 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:28.758 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:28.758 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:28.758 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:48:28.768 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:48:28.958 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:48:28.958 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:48:28.998 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:29.008 -07 000000459 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:48:29.008 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:48:29.008 -07 000000476 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:29.008 -07 000000476 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:48:29.008 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 21:48:29.958 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:29.958 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:48:29.968 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:29.968 -07 000000476 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:29.988 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:29.988 -07 000000476 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:48:29.988 -07 000000476 INF: Y Motor: Moved to 73.1763 after 1416 ms (table move)
17-03-17 21:48:29.988 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129146 mm (DAC = 28212)
17-03-17 21:48:29.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:29.998 -07 000000424 INF: FPGA: Recv ZSGSRD 29409
17-03-17 21:48:29.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:48:29.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:29.998 -07 000000012 INF: FPGA: Recv ZSGSRD 29392
17-03-17 21:48:30.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:30.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.008 -07 000000480 INF: FPGA: Recv ZSGSRD 29389
17-03-17 21:48:30.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.018 -07 000000438 INF: FPGA: Recv ZSGSRD 29392
17-03-17 21:48:30.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.028 -07 000000382 INF: FPGA: Recv ZSGSRD 29397
17-03-17 21:48:30.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.038 -07 000000415 INF: FPGA: Recv ZSGSRD 29402
17-03-17 21:48:30.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.048 -07 000000458 INF: FPGA: Recv ZSGSRD 29396
17-03-17 21:48:30.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.058 -07 000000459 INF: FPGA: Recv ZSGSRD 29392
17-03-17 21:48:30.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.068 -07 000000501 INF: FPGA: Recv ZSGSRD 29388
17-03-17 21:48:30.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29398
17-03-17 21:48:30.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:30.088 -07 000000415 INF: FPGA: Recv ZPIEZORD 25184
17-03-17 21:48:30.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.098 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.305 V. Piezo Error = -9.2 V.
17-03-17 21:48:30.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29396 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29394 (-128.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29388 (-128.3 uncal um), Max = 29409 (-128.5 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:48:30.098 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29396, posNoise = 13, negNoise = 8
17-03-17 21:48:30.098 -07 000000610 INF: Z Motor: After move to -0.129146, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:30.098 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 102 ms (allowed 150 ms), total time = 1521 ms
17-03-17 21:48:30.098 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:30.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 21:48:30.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:30.148 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.12916949213034. ----------
17-03-17 21:48:30.148 -07 000000610 INF: Cycle	55	Tile	17	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:30.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28036, sync = True, waitForSettling = True)
17-03-17 21:48:30.148 -07 000000610 INF: Z Motor: Moving to -0.128341 mm, started at -0.129169 mm, distance = 0.83 um
17-03-17 21:48:30.148 -07 000000610 INF: FPGA: Xmit ZDACW 28036\n [Z Motor]
17-03-17 21:48:30.148 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:48:30.158 -07 000000610 INF: FPGA: 'ZDACW 28036' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:48:30.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:30.158 -07 000000480 INF: FPGA: Recv ZDACR 28036
17-03-17 21:48:30.168 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:30.248 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 3.986717,
17-03-17 21:48:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29269
17-03-17 21:48:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.328 -07 000000415 INF: FPGA: Recv ZSGSRD 29269
17-03-17 21:48:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29264
17-03-17 21:48:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:48:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.358 -07 000000424 INF: FPGA: Recv ZSGSRD 29272
17-03-17 21:48:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.368 -07 000000475 INF: FPGA: Recv ZSGSRD 29271
17-03-17 21:48:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.378 -07 000000512 INF: FPGA: Recv ZSGSRD 29263
17-03-17 21:48:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29266
17-03-17 21:48:30.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.398 -07 000000458 INF: FPGA: Recv ZSGSRD 29271
17-03-17 21:48:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.408 -07 000000576 INF: FPGA: Recv ZSGSRD 29267
17-03-17 21:48:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:30.418 -07 000000431 INF: FPGA: Recv ZSGSRD 29266
17-03-17 21:48:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:30.428 -07 000000382 INF: FPGA: Recv ZPIEZORD 25042
17-03-17 21:48:30.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:30.438 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.3 V.
17-03-17 21:48:30.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29268 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29268 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29263 (-127.5 uncal um), Max = 29272 (-127.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:48:30.438 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29268, posNoise = 4, negNoise = 5
17-03-17 21:48:30.438 -07 000000610 INF: Z Motor: After move to -0.128341, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:30.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 21:48:30.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:30.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:30.438 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:30.438 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:30.438 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:30.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:30.438 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:30.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:30.438 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:48:30.438 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:30.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:48:30.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:30.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:30.448 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:30.448 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:30.448 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:30.458 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:48:30.458 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:48:30.458 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:48:30.458 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:48:30.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28212 150\n [Camera]
17-03-17 21:48:30.658 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:31.098 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:31.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:31.098 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:31.098 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:31.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:48:31.108 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:31.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:31.108 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:31.108 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:31.108 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:48:31.298 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28212 823
17-03-17 21:48:31.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:48:31.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:48:31.478 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:48:31.478 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:31.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:48:31.478 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:48:31.478 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:31.478 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:31.478 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:48:31.488 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:31.488 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:48:31.658 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:31.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:31.658 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:31.658 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:31.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:48:31.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:31.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:31.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:31.658 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:31.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:48:31.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:48:31.848 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:31.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28212 150' command took 2 ms to send, 1376 ms to get response, and 1387 ms overall
17-03-17 21:48:31.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:48:31.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128347192976195. ------
17-03-17 21:48:31.858 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:31.858 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13463 mm
17-03-17 21:48:31.858 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:31.858 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:31.858 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29410, sync = True, waitForSettling = False)
17-03-17 21:48:31.858 -07 000000512 INF: Z Motor: Moving to -0.134630 mm, started at -0.128347 mm, distance = -6.28 um
17-03-17 21:48:31.858 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:48:31.868 -07 000000501 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:48:31.868 -07 000000512 INF: FPGA: Xmit ZDACW 29410\n [Z Motor]
17-03-17 21:48:31.868 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:48:31.868 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:48:31.878 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:31.878 -07 000000512 INF: FPGA: 'ZDACW 29410' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:31.878 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:48:31.888 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:48:31.888 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:48:31.888 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:31.888 -07 000000501 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:31.888 -07 000000501 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:48:31.898 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:31.898 -07 000000424 INF: FPGA: Recv ZDACR 29410
17-03-17 21:48:31.908 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:31.908 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:48:31.908 -07 000000512 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:48:31.908 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:31.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:32.038 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:48:32.038 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:48:32.038 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:32.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:48:32.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:48:32.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:32.048 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:32.048 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:48:32.048 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:32.058 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:48:32.088 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:48:32.088 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:48:32.278 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:48:32.278 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:48:32.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:32.318 -07 000000458 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:48:32.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:32.328 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:32.328 -07 000000501 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:48:32.328 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 21:48:33.278 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:33.278 -07 000000576 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:48:33.288 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:33.288 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:33.298 -07 000000501 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:33.298 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:48:33.298 -07 000000501 INF: Y Motor: Moved to 74.0083 after 1438 ms (table move)
17-03-17 21:48:33.308 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134630 mm (DAC = 29410)
17-03-17 21:48:33.308 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30245
17-03-17 21:48:33.318 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:48:33.318 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30244
17-03-17 21:48:33.328 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.328 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.328 -07 000000608 INF: FPGA: Recv ZSGSRD 30244
17-03-17 21:48:33.338 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.338 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.338 -07 000000382 INF: FPGA: Recv ZSGSRD 30250
17-03-17 21:48:33.348 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.348 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.348 -07 000000547 INF: FPGA: Recv ZSGSRD 30240
17-03-17 21:48:33.358 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.358 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30248
17-03-17 21:48:33.368 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.368 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.368 -07 000000475 INF: FPGA: Recv ZSGSRD 30252
17-03-17 21:48:33.378 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.378 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.378 -07 000000012 INF: FPGA: Recv ZSGSRD 30243
17-03-17 21:48:33.388 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.388 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.388 -07 000000480 INF: FPGA: Recv ZSGSRD 30243
17-03-17 21:48:33.398 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.398 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:33.398 -07 000000627 INF: FPGA: Recv ZSGSRD 30245
17-03-17 21:48:33.408 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.408 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:33.408 -07 000000415 INF: FPGA: Recv ZPIEZORD 26287
17-03-17 21:48:33.418 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:33.418 -07 000000438 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -8.7 V.
17-03-17 21:48:33.418 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30245 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30244 (-133.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30240 (-133.8 uncal um), Max = 30252 (-133.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:48:33.418 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30245, posNoise = 7, negNoise = 5
17-03-17 21:48:33.418 -07 000000438 INF: Z Motor: After move to -0.134630, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:33.418 -07 000000438 INF: Z Motor: Settle wait time = 1442 ms, measure time = 108 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:48:33.418 -07 000000438 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:33.468 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:48:33.468 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:33.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:33.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:33.468 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:33.468 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:33.468 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:48:33.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:33.468 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:48:33.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:48:33.478 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:33.478 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:48:33.488 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:48:33.488 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:48:33.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:48:33.538 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:48:33.738 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:48:33.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:48:33.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:48:33.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:48:33.778 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:48:33.778 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:48:33.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 21:48:33.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:48:33.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:33.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:48:33.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:48:33.878 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:33.878 -07 000000576 INF: Autofocus start
17-03-17 21:48:33.878 -07 000000576 INF: MeasureProfile start
17-03-17 21:48:33.878 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:33.888 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:48:33.888 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:48:33.888 -07 000000576 INF: MeasureProfile done
17-03-17 21:48:33.888 -07 000000576 INF: X=128  Z correction [um]=0.5917814
17-03-17 21:48:33.888 -07 000000576 INF: Autofocus finished
17-03-17 21:48:34.088 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:48:34.088 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:48:34.088 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 21:48:34.088 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134623648238695. ----------
17-03-17 21:48:34.088 -07 000000610 INF: Cycle	55	Tile	18	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:34.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28052, sync = True, waitForSettling = True)
17-03-17 21:48:34.098 -07 000000610 INF: Z Motor: Moving to -0.128414 mm, started at -0.134624 mm, distance = 6.21 um
17-03-17 21:48:34.098 -07 000000610 INF: FPGA: Xmit ZDACW 28052\n [Z Motor]
17-03-17 21:48:34.098 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:48:34.108 -07 000000610 INF: FPGA: 'ZDACW 28052' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:34.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:34.108 -07 000000431 INF: FPGA: Recv ZDACR 28052
17-03-17 21:48:34.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.268 -07 000000480 INF: FPGA: Recv ZSGSRD 29275
17-03-17 21:48:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29277
17-03-17 21:48:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29283
17-03-17 21:48:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29276
17-03-17 21:48:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.308 -07 000000431 INF: FPGA: Recv ZSGSRD 29283
17-03-17 21:48:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.318 -07 000000547 INF: FPGA: Recv ZSGSRD 29279
17-03-17 21:48:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.328 -07 000000626 INF: FPGA: Recv ZSGSRD 29273
17-03-17 21:48:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.338 -07 000000459 INF: FPGA: Recv ZSGSRD 29279
17-03-17 21:48:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.348 -07 000000569 INF: FPGA: Recv ZSGSRD 29273
17-03-17 21:48:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:34.358 -07 000000501 INF: FPGA: Recv ZSGSRD 29277
17-03-17 21:48:34.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:34.368 -07 000000627 INF: FPGA: Recv ZPIEZORD 25009
17-03-17 21:48:34.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:34.378 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.4 V.
17-03-17 21:48:34.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29278 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29277 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29273 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:48:34.378 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29278, posNoise = 5, negNoise = 5
17-03-17 21:48:34.378 -07 000000610 INF: Z Motor: After move to -0.128414, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:34.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:48:34.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:34.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:34.378 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:34.378 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:34.378 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:34.378 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:34.378 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:34.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:34.378 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:48:34.378 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:34.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:48:34.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:34.378 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:48:34.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:34.388 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:34.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:34.388 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:48:34.388 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:48:34.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:48:34.398 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:48:34.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28229 150\n [Camera]
17-03-17 21:48:34.598 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:35.038 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:35.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:35.038 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:35.038 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:35.038 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:48:35.038 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:35.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:35.038 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:35.038 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:35.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:48:35.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28229 823
17-03-17 21:48:35.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:35.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:48:35.408 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:48:35.408 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:35.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:48:35.408 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:48:35.418 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:35.418 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:35.418 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:48:35.418 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:48:35.428 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:48:35.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:35.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:35.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:35.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:35.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:35.728 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:35.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:48:35.728 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:35.728 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.003063,
17-03-17 21:48:35.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:35.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:48:35.778 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:48:35.778 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:35.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28229 150' command took 2 ms to send, 1377 ms to get response, and 1383 ms overall
17-03-17 21:48:35.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:48:35.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128411435097612. ------
17-03-17 21:48:35.788 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:35.788 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13485 mm
17-03-17 21:48:35.788 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:48:35.788 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:48:35.788 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:35.788 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29457, sync = True, waitForSettling = False)
17-03-17 21:48:35.788 -07 000000626 INF: Z Motor: Moving to -0.134846 mm, started at -0.128411 mm, distance = -6.43 um
17-03-17 21:48:35.788 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:48:35.798 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:35.798 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:35.798 -07 000000438 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:48:35.808 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:48:35.808 -07 000000429 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:35.808 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:48:35.808 -07 000000429 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:48:35.808 -07 000000626 INF: FPGA: Xmit ZDACW 29457\n [Z Motor]
17-03-17 21:48:35.808 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:48:35.818 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:48:35.818 -07 000000626 INF: FPGA: 'ZDACW 29457' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:48:35.828 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:48:35.838 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:35.838 -07 000000475 INF: FPGA: Recv ZDACR 29457
17-03-17 21:48:35.848 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:48:35.848 -07 000000626 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:48:36.018 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:48:36.018 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:48:36.118 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:48:36.118 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:48:36.118 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:36.128 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:48:36.128 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:48:36.128 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:36.128 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:36.128 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-17 21:48:36.128 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:36.138 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:48:36.198 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:48:36.198 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:48:36.228 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:36.228 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:48:36.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:48:36.238 -07 000000429 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:36.238 -07 000000429 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:48:36.238 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 21:48:36.908 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:36.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 54. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:37.188 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:37.188 -07 000000415 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:48:37.198 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:37.198 -07 000000429 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:37.208 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:37.208 -07 000000429 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:48:37.208 -07 000000429 INF: Y Motor: Moved to 74.8325 after 1420 ms (table move)
17-03-17 21:48:37.218 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134846 mm (DAC = 29457)
17-03-17 21:48:37.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30289
17-03-17 21:48:37.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:37.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.228 -07 000000012 INF: FPGA: Recv ZSGSRD 30277
17-03-17 21:48:37.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.238 -07 000000475 INF: FPGA: Recv ZSGSRD 30276
17-03-17 21:48:37.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30279
17-03-17 21:48:37.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.258 -07 000000382 INF: FPGA: Recv ZSGSRD 30279
17-03-17 21:48:37.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.268 -07 000000429 INF: FPGA: Recv ZSGSRD 30284
17-03-17 21:48:37.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.278 -07 000000431 INF: FPGA: Recv ZSGSRD 30290
17-03-17 21:48:37.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.288 -07 000000458 INF: FPGA: Recv ZSGSRD 30280
17-03-17 21:48:37.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.298 -07 000000547 INF: FPGA: Recv ZSGSRD 30277
17-03-17 21:48:37.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:37.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30277
17-03-17 21:48:37.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.318 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:37.318 -07 000000569 INF: FPGA: Recv ZPIEZORD 26356
17-03-17 21:48:37.328 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:37.328 -07 000000501 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.495 V. Piezo Error = -8.6 V.
17-03-17 21:48:37.328 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30281 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30279 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30276 (-134.0 uncal um), Max = 30290 (-134.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:48:37.328 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30281, posNoise = 9, negNoise = 5
17-03-17 21:48:37.328 -07 000000501 INF: Z Motor: After move to -0.134846, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:37.328 -07 000000501 INF: Z Motor: Settle wait time = 1425 ms, measure time = 109 ms (allowed 150 ms), total time = 1534 ms
17-03-17 21:48:37.328 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:48:37.378 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 21:48:37.378 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:48:37.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:37.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:37.378 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:37.378 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:37.378 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:48:37.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:37.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:48:37.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:48:37.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:48:37.388 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:48:37.398 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:48:37.398 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:48:37.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:48:37.448 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:48:37.648 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:48:37.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:48:37.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:48:37.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 21:48:37.688 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:48:37.688 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:48:37.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:48:37.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:48:37.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:37.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:48:37.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:48:37.788 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:48:37.788 -07 000000626 INF: Autofocus start
17-03-17 21:48:37.788 -07 000000626 INF: MeasureProfile start
17-03-17 21:48:37.788 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:48:37.798 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:48:37.798 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:48:37.798 -07 000000626 INF: MeasureProfile done
17-03-17 21:48:37.798 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:48:37.798 -07 000000626 INF: Autofocus finished
17-03-17 21:48:37.998 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:48:37.998 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:48:37.998 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134854919875799. ----------
17-03-17 21:48:37.998 -07 000000610 INF: Cycle	55	Tile	19	Exposure Settings		A	438	G	211	T	211	C	438
17-03-17 21:48:38.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27965, sync = True, waitForSettling = True)
17-03-17 21:48:38.008 -07 000000610 INF: Z Motor: Moving to -0.128016 mm, started at -0.134855 mm, distance = 6.84 um
17-03-17 21:48:38.008 -07 000000610 INF: FPGA: Xmit ZDACW 27965\n [Z Motor]
17-03-17 21:48:38.008 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:48:38.018 -07 000000610 INF: FPGA: 'ZDACW 27965' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:48:38.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:48:38.018 -07 000000501 INF: FPGA: Recv ZDACR 27965
17-03-17 21:48:38.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:48:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29217
17-03-17 21:48:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.188 -07 000000458 INF: FPGA: Recv ZSGSRD 29214
17-03-17 21:48:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.198 -07 000000415 INF: FPGA: Recv ZSGSRD 29217
17-03-17 21:48:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.208 -07 000000459 INF: FPGA: Recv ZSGSRD 29218
17-03-17 21:48:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.218 -07 000000547 INF: FPGA: Recv ZSGSRD 29220
17-03-17 21:48:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.228 -07 000000476 INF: FPGA: Recv ZSGSRD 29214
17-03-17 21:48:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.238 -07 000000458 INF: FPGA: Recv ZSGSRD 29215
17-03-17 21:48:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29218
17-03-17 21:48:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.258 -07 000000431 INF: FPGA: Recv ZSGSRD 29210
17-03-17 21:48:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:48:38.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29216
17-03-17 21:48:38.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:48:38.278 -07 000000576 INF: FPGA: Recv ZPIEZORD 24944
17-03-17 21:48:38.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:48:38.288 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.4 V.
17-03-17 21:48:38.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29216 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29216 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29210 (-127.2 uncal um), Max = 29220 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:48:38.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29216, posNoise = 4, negNoise = 6
17-03-17 21:48:38.288 -07 000000610 INF: Z Motor: After move to -0.128016, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:48:38.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:48:38.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:48:38.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:48:38.288 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:48:38.288 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:48:38.288 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:48:38.288 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:48:38.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:48:38.288 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:48:38.288 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:48:38.288 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:48:38.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:48:38.288 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:48:38.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:48:38.298 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:48:38.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:48:38.298 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:48:38.308 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:48:38.308 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:48:38.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:48:38.308 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:48:38.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 438 438 211 211 28141 150\n [Camera]
17-03-17 21:48:38.508 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:48:38.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 630
17-03-17 21:48:38.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 630
17-03-17 21:48:38.948 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:38.948 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:38.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:48:38.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 630
17-03-17 21:48:38.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 630
17-03-17 21:48:38.948 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:38.948 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:38.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:48:39.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28141 823
17-03-17 21:48:39.288 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 973
17-03-17 21:48:39.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:48:39.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:48:39.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:39.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:48:39.328 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:48:39.328 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:39.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:48:39.448 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 21:48:39.448 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 119 ms.
17-03-17 21:48:39.458 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 21:48:39.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1184
17-03-17 21:48:39.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1184
17-03-17 21:48:39.498 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:48:39.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1184
17-03-17 21:48:39.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1184
17-03-17 21:48:39.498 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:48:39.498 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:48:39.498 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:48:39.498 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:48:39.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:48:39.688 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1376
17-03-17 21:48:39.688 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:48:39.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 438 438 211 211 28141 150' command took 2 ms to send, 1376 ms to get response, and 1383 ms overall
17-03-17 21:48:39.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:48:39.878 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:48:39.888 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:39.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:48:39.888 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:48:39.888 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:48:39.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:39.888 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:48:39.888 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:48:39.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:48:39.898 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:48:39.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:48:39.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:48:39.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:48:39.988 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 21:48:39.988 -07 000000610 INF: Imaging Cycle 55: ScanTilesCommand Cycle 55 time end. Duration was 142293 ms.
17-03-17 21:48:39.988 -07 000000610 INF: =================== Cycle #55 ===================
17-03-17 21:48:39.988 -07 000000610 INF: ===================  ===================
17-03-17 21:48:39.988 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:48:39.988 -07 000000438 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 21:48:39.998 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:39.998 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 21:48:39.998 -07 000000627 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 55, FrontChillerTemperature: 4.003063, FrontChillerHeatSinkTemperature: 0.266246, AmbientTemperature: 19.09375, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 19.10485, GreenLEDSensorTemperature: 25.56516, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 21:48:40.038 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.