17-03-17 21:48:40.088 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:48:40.088 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:48:40.088 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:48:40.088 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:40.098 -07 000000576 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:48:40.098 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:48:40.098 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:40.098 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:48:40.098 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:48:40.098 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:48:40.208 -07 000000608 INF: FPGA: Recv YMVTO 154377 871
17-03-17 21:48:40.208 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:48:40.208 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 21:48:40.208 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 21:48:40.208 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 21:48:41.098 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.014009,
17-03-17 21:48:41.908 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:48:41.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=844, R2=867, Total=1711. Warn if over 250 bubbles per interval.
17-03-17 21:48:43.208 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:48:43.208 -07 000000424 INF: FPGA: Recv YRDPOS 154379
17-03-17 21:48:43.218 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:48:43.218 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:48:43.228 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:48:43.228 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 21:48:43.228 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3139 ms
17-03-17 21:48:43.238 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 60° ===================
17-03-17 21:48:43.238 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:48:43.238 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:48:43.248 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:48:43.248 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:48:43.248 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:48:43.248 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 21:48:43.258 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:48:43.258 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 60° ===================
17-03-17 21:48:43.258 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:48:43.258 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:48:43.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:48:43.288 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:48:43.288 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:48:43.288 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:48:43.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:48:43.608 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:48:43.608 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:48:43.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:48:43.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:48:43.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:48:43.778 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:48:43.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:48:43.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:43.808 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:48:43.808 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:48:43.808 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:48:43.938 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:48:43.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:48:46.468 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.994908,
17-03-17 21:48:46.908 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 21:48:46.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=846, R2=870, Total=1716. Warn if over 250 bubbles per interval.
17-03-17 21:48:47.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:47.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:48:47.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:47.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:48:48.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:48.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:48.038 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:48:48.038 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:48:48.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:48.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:48:48.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:48:48.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:48.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:48:48.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:48:48.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:48:48.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:48:48.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:48.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:48.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:48.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:48:48.978 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:48:50.198 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:48:50.198 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:48:50.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:48:50.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:48:50.218 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:48:50.218 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:48:50.358 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:48:50.378 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:48:50.378 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:48:50.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:48:50.448 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:48:50.448 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:48:50.548 -07 000000610 INF: =================== Cycle #56, Pumping Reagent CMS (4) ===================
17-03-17 21:48:50.548 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:48:50.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:50.578 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:48:50.578 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:48:50.578 -07 000000610 INF: =================== Cycle #56, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:48:50.708 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:48:50.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:48:51.848 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.99219,
17-03-17 21:48:51.908 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 21:48:51.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=848, R2=872, Total=1720. Warn if over 250 bubbles per interval.
17-03-17 21:48:52.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:52.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:48:52.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:52.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:52.668 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:48:52.668 -07 000000610 INF: =================== Cycle #56, Pumping Reagent CMS (4) ===================
17-03-17 21:48:52.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:52.828 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:48:52.828 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:48:52.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:52.988 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:48:52.988 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:48:52.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:48:53.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:48:53.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:53.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:53.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:53.608 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:48:53.608 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:48:54.828 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:48:54.828 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:48:54.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:48:54.848 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:48:54.848 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:48:54.848 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:48:54.998 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:48:55.018 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:48:55.018 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:48:55.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:48:55.088 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:48:55.088 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:48:55.188 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:48:55.188 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:48:55.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:55.218 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:48:55.218 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:48:55.218 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:48:55.348 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:48:55.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:48:56.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:56.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:56.288 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:48:56.288 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:48:56.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:56.448 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:48:56.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:48:56.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:48:56.608 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:48:56.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:48:56.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:48:56.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:48:56.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:56.908 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 9
17-03-17 21:48:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=9, R2=6, Total=15. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=857, R2=878, Total=1735. Warn if over 250 bubbles per interval.
17-03-17 21:48:57.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:48:57.208 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.970374,
17-03-17 21:48:57.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:48:57.228 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:48:57.228 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:48:57.228 -07 000000424 INF: WaitCommand(10000) start
17-03-17 21:48:57.228 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:48:57.228 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:48:58.448 -07 000000480 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:48:58.448 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 21:48:58.478 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:48:58.478 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:48:58.608 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:48:58.648 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:00.178 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:00.208 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:00.628 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:00.658 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:00.658 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:49:00.658 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:49:00.658 -07 000000480 INF: ===================  ===================
17-03-17 21:49:01.908 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=857, R2=878, Total=1735. Warn if over 250 bubbles per interval.
17-03-17 21:49:02.578 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.971733,
17-03-17 21:49:06.908 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:06.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=857, R2=878, Total=1735. Warn if over 250 bubbles per interval.
17-03-17 21:49:07.238 -07 000000424 INF: WaitCommand(10000) end
17-03-17 21:49:07.238 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:49:07.238 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:49:07.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:07.278 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:49:07.278 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:49:07.278 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:49:07.408 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:49:07.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:07.948 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.975845,
17-03-17 21:49:11.908 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:11.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=857, R2=878, Total=1735. Warn if over 250 bubbles per interval.
17-03-17 21:49:13.318 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.981281,
17-03-17 21:49:13.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:13.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:14.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:14.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:14.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:14.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:14.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:14.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:15.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:15.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:15.408 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:49:15.408 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:49:15.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:15.568 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:49:15.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:49:15.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:15.728 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:49:15.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:49:15.728 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:49:15.858 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:49:15.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:16.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:16.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:16.348 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:49:16.348 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:49:16.918 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:16.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=857, R2=878, Total=1735. Warn if over 250 bubbles per interval.
17-03-17 21:49:17.568 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:49:17.568 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:49:17.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:49:17.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:49:17.588 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:49:17.588 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:49:17.798 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:49:17.818 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:49:17.818 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:49:17.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:49:17.888 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:49:17.888 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:49:17.988 -07 000000610 INF: =================== Cycle #56, Pumping Reagent IMT (1) ===================
17-03-17 21:49:17.988 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:49:17.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:18.018 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:49:18.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:49:18.018 -07 000000610 INF: =================== Cycle #56, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:49:18.148 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:49:18.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:18.688 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.988112,
17-03-17 21:49:19.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:19.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:20.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:20.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:20.108 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:49:20.108 -07 000000610 INF: =================== Cycle #56, Pumping Reagent IMT (1) ===================
17-03-17 21:49:20.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:20.268 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:49:20.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:49:20.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:20.428 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:49:20.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:49:20.428 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:49:20.558 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:49:20.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:21.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:21.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:21.048 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:49:21.048 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:49:21.918 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 21:49:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=878, Total=1737. Warn if over 250 bubbles per interval.
17-03-17 21:49:22.268 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:49:22.268 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:49:22.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:49:22.288 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:49:22.288 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:49:22.288 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:49:22.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:49:22.538 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:49:22.538 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:49:22.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:49:22.608 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:49:22.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:49:22.708 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:49:22.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:49:22.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:22.738 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:49:22.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:49:22.738 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:49:22.868 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:49:22.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:23.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:23.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:23.808 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 21:49:23.808 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:49:23.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:23.968 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:49:23.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:49:24.058 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.02213,
17-03-17 21:49:24.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:24.128 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:49:24.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:49:24.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:49:24.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:49:24.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:24.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:24.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:24.748 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:49:24.748 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:49:24.748 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 65° ===================
17-03-17 21:49:24.748 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:49:24.748 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:49:24.748 -07 000000458 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:49:24.758 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:49:24.758 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:49:24.758 -07 000000431 INF: FPGA: Recv TEC2EN 
17-03-17 21:49:24.768 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:49:24.768 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 65° ===================
17-03-17 21:49:24.768 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:49:24.768 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:49:26.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 21:49:26.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:29.428 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.011254,
17-03-17 21:49:31.918 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:34.808 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.999021,
17-03-17 21:49:36.918 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:36.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:40.168 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.999021,
17-03-17 21:49:41.918 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:41.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:45.538 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.99219,
17-03-17 21:49:46.918 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:46.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:50.908 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.016692,
17-03-17 21:49:51.918 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:51.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:54.778 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:49:54.778 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:49:54.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:49:54.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:54.908 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:49:54.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:49:54.908 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:49:55.038 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:49:55.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:49:55.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:55.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:55.648 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:49:55.648 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:49:55.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:55.808 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:49:55.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:49:55.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:49:55.968 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:49:55.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:49:55.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:49:56.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:49:56.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:56.278 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.027603,
17-03-17 21:49:56.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:49:56.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:49:56.588 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:49:56.588 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:49:56.588 -07 000000569 INF: WaitCommand(30000) start
17-03-17 21:49:56.588 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:49:56.588 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:49:56.918 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:49:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:49:57.808 -07 000000424 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:49:57.808 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-17 21:49:57.838 -07 000000424 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:49:57.838 -07 000000424 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:49:57.968 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:49:58.008 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:00.348 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:00.378 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:00.798 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:00.828 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:00.828 -07 000000424 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:50:00.828 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:50:00.828 -07 000000424 INF: ===================  ===================
17-03-17 21:50:01.648 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.007176,
17-03-17 21:50:01.918 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:50:06.918 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:06.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:50:07.018 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.993549,
17-03-17 21:50:11.918 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:11.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:50:12.388 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.96762,
17-03-17 21:50:16.918 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:16.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:50:17.758 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.962185,
17-03-17 21:50:21.918 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:50:23.128 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.989471,
17-03-17 21:50:26.598 -07 000000569 INF: WaitCommand(30000) end
17-03-17 21:50:26.598 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 22° ===================
17-03-17 21:50:26.598 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:50:26.598 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:50:26.608 -07 000000458 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:50:26.608 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:50:26.608 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:50:26.608 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 21:50:26.618 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:50:26.618 -07 000000610 INF: =================== Cycle #56, Flow Cell Temp 22° ===================
17-03-17 21:50:26.618 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:50:26.618 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:50:26.618 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:50:26.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:26.658 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:50:26.658 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:50:26.658 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:50:26.788 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:50:26.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:26.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:26.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=859, R2=880, Total=1739. Warn if over 250 bubbles per interval.
17-03-17 21:50:28.498 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.973092,
17-03-17 21:50:29.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:29.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:30.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:30.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:30.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:30.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:30.888 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:50:30.888 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:50:31.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:31.048 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:50:31.048 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:50:31.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:31.208 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:50:31.208 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:50:31.208 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:50:31.338 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:50:31.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:31.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:31.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:31.828 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:50:31.828 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:50:31.918 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 4
17-03-17 21:50:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=4, R2=2, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:50:33.048 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:50:33.048 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:50:33.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:50:33.068 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:50:33.068 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:50:33.068 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:50:33.218 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:50:33.238 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:50:33.238 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:50:33.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:50:33.308 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:50:33.308 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:50:33.408 -07 000000610 INF: =================== Cycle #56, Pumping Reagent USM (2) ===================
17-03-17 21:50:33.408 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:50:33.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:33.438 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:50:33.438 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:50:33.438 -07 000000610 INF: =================== Cycle #56, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:50:33.568 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:50:33.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:33.878 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.974486,
17-03-17 21:50:35.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:35.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:35.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:35.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:35.528 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:50:35.528 -07 000000610 INF: =================== Cycle #56, Pumping Reagent USM (2) ===================
17-03-17 21:50:35.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:35.688 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:50:35.688 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:50:35.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:35.848 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:50:35.848 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:50:35.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:50:35.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:50:36.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:36.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:36.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:36.468 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:50:36.468 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:50:36.918 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:36.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:50:37.688 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:50:37.688 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:50:37.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:50:37.708 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:50:37.708 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:50:37.708 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:50:37.858 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:50:37.878 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:50:37.878 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:50:37.928 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:50:37.948 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:50:37.948 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:50:38.048 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:50:38.048 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:50:38.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:38.078 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:50:38.078 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:50:38.078 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:50:38.208 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:50:38.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:39.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:39.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:39.148 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:50:39.148 -07 000000610 INF: =================== Cycle #56, Pumping Reagent PR2 (3) ===================
17-03-17 21:50:39.238 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.99219,
17-03-17 21:50:39.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:39.308 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:50:39.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:50:39.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:50:39.468 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:50:39.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:50:39.468 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:50:39.598 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:50:39.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:40.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:40.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:40.088 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:50:40.088 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:50:40.088 -07 000000512 INF: WaitCommand(10000) start
17-03-17 21:50:40.088 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:50:40.088 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:50:41.308 -07 000000626 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:50:41.308 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 21:50:41.338 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:50:41.338 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:50:41.468 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:50:41.508 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:41.918 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:41.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:50:43.038 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:43.068 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:50:43.488 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 21:50:43.518 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:50:43.518 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:50:43.518 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:50:43.518 -07 000000626 INF: ===================  ===================
17-03-17 21:50:44.608 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.001704,
17-03-17 21:50:46.918 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:46.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:50:49.978 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.023489,
17-03-17 21:50:50.098 -07 000000512 INF: WaitCommand(10000) end
17-03-17 21:50:50.098 -07 000000610 INF: =================== Cycle #56, Imaging ===================
17-03-17 21:50:50.098 -07 000000610 INF: Imaging Cycle 56: ScanTilesCommand Cycle 56 time start.
17-03-17 21:50:50.098 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:50:50.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:50:50.128 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:50:50.128 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:50:50.128 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:50:50.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:50:50.448 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:50:50.448 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:50:50.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:50:50.518 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:50:50.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:50:50.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:50:50.518 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:50:50.518 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:50:50.518 -07 000000576 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:50:50.518 -07 000000512 INF: FPGA: Recv EXLED1ON 
17-03-17 21:50:50.528 -07 000000576 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:50:50.528 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:50:50.528 -07 000000547 INF: FPGA: Recv EXLED1ADCR 23217
17-03-17 21:50:50.538 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:50.538 -07 000000576 INF: RedLED: Using Red data: Photodiode ADC 23217 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.3 mW
17-03-17 21:50:50.538 -07 000000576 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:50:50.538 -07 000000415 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:50:50.548 -07 000000576 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:50:50.548 -07 000000576 INF: RedLED: LED was on for 20 ms
17-03-17 21:50:50.548 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 21:50:50.548 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:50:50.548 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:50:50.548 -07 000000576 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:50:50.548 -07 000000627 INF: FPGA: Recv EXLED2ON 
17-03-17 21:50:50.558 -07 000000576 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:50:50.558 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:50:50.558 -07 000000438 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 21:50:50.568 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:50.568 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 21:50:50.568 -07 000000576 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:50:50.568 -07 000000569 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:50:50.578 -07 000000576 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:50.578 -07 000000576 INF: GreenLED: LED was on for 20 ms
17-03-17 21:50:50.578 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:50:50.578 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:50:50.578 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 21:50:50.588 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:50:50.588 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:50:51.088 -07 000000608 INF: FPGA: Recv EMOUT
17-03-17 21:50:51.088 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 503 ms overall
17-03-17 21:50:51.088 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:50:51.088 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 21:50:51.098 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:50:51.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:50:51.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.128013133944823. ------
17-03-17 21:50:51.098 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17946 mm
17-03-17 21:50:51.098 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:50:51.098 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:50:51.098 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 39203, sync = True, waitForSettling = False)
17-03-17 21:50:51.098 -07 000000012 INF: Z Motor: Moving to -0.179460 mm, started at -0.128013 mm, distance = -51.45 um
17-03-17 21:50:51.098 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:50:51.108 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 21:50:51.108 -07 000000012 INF: FPGA: Xmit ZDACW 39203\n [Z Motor]
17-03-17 21:50:51.108 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:50:51.108 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:50:51.108 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:50:51.118 -07 000000012 INF: FPGA: 'ZDACW 39203' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:50:51.118 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:50:51.118 -07 000000501 INF: FPGA: Recv ZDACR 39203
17-03-17 21:50:51.128 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:50:51.128 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:50:51.128 -07 000000012 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:50:51.128 -07 000000458 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:50:51.138 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:50:51.138 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:50:51.138 -07 000000547 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:50:51.138 -07 000000547 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:50:51.138 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:50:51.148 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:50:51.338 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:50:51.338 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 21:50:51.918 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:51.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:50:52.828 -07 000000576 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 21:50:52.828 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1693 ms overall
17-03-17 21:50:52.828 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:50:52.828 -07 000000547 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 21:50:52.828 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1693 ms, distance = 15.468 mm, average velocity = 9.136 mm/sec
17-03-17 21:50:55.348 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.019446,
17-03-17 21:50:55.688 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:50:55.688 -07 000000012 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:50:55.698 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:50:55.698 -07 000000547 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:50:55.718 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:50:55.718 -07 000000547 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:50:55.718 -07 000000547 INF: Y Motor: Moved to 59.9102 after 4618 ms
17-03-17 21:50:55.728 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179460 mm (DAC = 39203)
17-03-17 21:50:55.728 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.728 -07 000000512 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:50:55.738 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:50:55.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.738 -07 000000382 INF: FPGA: Recv ZSGSRD 37230
17-03-17 21:50:55.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.748 -07 000000459 INF: FPGA: Recv ZSGSRD 37220
17-03-17 21:50:55.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.758 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.758 -07 000000438 INF: FPGA: Recv ZSGSRD 37221
17-03-17 21:50:55.768 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.768 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.768 -07 000000424 INF: FPGA: Recv ZSGSRD 37222
17-03-17 21:50:55.778 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.778 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.778 -07 000000512 INF: FPGA: Recv ZSGSRD 37231
17-03-17 21:50:55.788 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.788 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.788 -07 000000475 INF: FPGA: Recv ZSGSRD 37224
17-03-17 21:50:55.798 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.798 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.798 -07 000000431 INF: FPGA: Recv ZSGSRD 37224
17-03-17 21:50:55.808 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.808 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.808 -07 000000501 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:50:55.818 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:55.818 -07 000000608 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:50:55.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.828 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:50:55.828 -07 000000476 INF: FPGA: Recv ZPIEZORD 33707
17-03-17 21:50:55.838 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:55.838 -07 000000480 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -7.8 V.
17-03-17 21:50:55.838 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37226 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37226 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37220 (-178.5 uncal um), Max = 37231 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:50:55.838 -07 000000480 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37226, posNoise = 5, negNoise = 6
17-03-17 21:50:55.838 -07 000000480 INF: Z Motor: After move to -0.179460, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:50:55.838 -07 000000480 INF: Z Motor: Settle wait time = 4622 ms, measure time = 110 ms (allowed 150 ms), total time = 4732 ms
17-03-17 21:50:55.838 -07 000000480 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:50:55.878 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-17 21:50:55.878 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:50:55.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:50:55.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:50:55.878 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:50:55.878 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:50:55.878 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:50:55.878 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:50:55.878 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:50:55.878 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:50:55.908 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 21:50:55.908 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:50:55.908 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:50:55.908 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:50:55.918 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:50:55.918 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 21:50:55.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:50:55.968 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:50:56.168 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:50:56.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:50:56.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:50:56.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) start.
17-03-17 21:50:56.208 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:50:56.208 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:50:56.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:50:56.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619123384, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:50:56.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:50:56.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:50:56.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:50:56.408 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:50:56.408 -07 000000480 INF: Image SNR check: start
17-03-17 21:50:56.408 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:50:56.418 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:50:56.418 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:50:56.418 -07 000000480 INF: Image SNR check: pass  [peak (Max-Min)=62.00]
17-03-17 21:50:56.418 -07 000000480 INF: Autofocus start
17-03-17 21:50:56.418 -07 000000480 INF: MeasureProfile start
17-03-17 21:50:56.438 -07 000000480 INF: MeasureProfile done
17-03-17 21:50:56.438 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:50:56.438 -07 000000480 INF: Autofocus finished
17-03-17 21:50:56.618 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:50:56.618 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 21:50:56.618 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179471073200328. ----------
17-03-17 21:50:56.618 -07 000000610 INF: Cycle	56	Tile	1	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:50:56.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37735, sync = True, waitForSettling = True)
17-03-17 21:50:56.628 -07 000000610 INF: Z Motor: Moving to -0.172740 mm, started at -0.179471 mm, distance = 6.73 um
17-03-17 21:50:56.628 -07 000000610 INF: FPGA: Xmit ZDACW 37735\n [Z Motor]
17-03-17 21:50:56.628 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:50:56.638 -07 000000610 INF: FPGA: 'ZDACW 37735' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:50:56.638 -07 000000476 INF: FPGA: Recv ZDACR 37735
17-03-17 21:50:56.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:50:56.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.798 -07 000000438 INF: FPGA: Recv ZSGSRD 36185
17-03-17 21:50:56.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:50:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.808 -07 000000429 INF: FPGA: Recv ZSGSRD 36183
17-03-17 21:50:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.818 -07 000000626 INF: FPGA: Recv ZSGSRD 36171
17-03-17 21:50:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.828 -07 000000512 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:50:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:50:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.848 -07 000000475 INF: FPGA: Recv ZSGSRD 36180
17-03-17 21:50:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.858 -07 000000569 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:50:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.868 -07 000000547 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:50:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.878 -07 000000480 INF: FPGA: Recv ZSGSRD 36184
17-03-17 21:50:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:56.888 -07 000000476 INF: FPGA: Recv ZSGSRD 36178
17-03-17 21:50:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:50:56.898 -07 000000438 INF: FPGA: Recv ZPIEZORD 32309
17-03-17 21:50:56.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:56.908 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -8.6 V.
17-03-17 21:50:56.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36180 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36180 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36171 (-171.8 uncal um), Max = 36185 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:50:56.908 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36180, posNoise = 5, negNoise = 9
17-03-17 21:50:56.908 -07 000000610 INF: Z Motor: After move to -0.172740, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:50:56.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:50:56.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:50:56.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:50:56.908 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:50:56.908 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:50:56.908 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:50:56.908 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:50:56.908 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:50:56.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:50:56.908 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:50:56.908 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:50:56.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:50:56.908 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:50:56.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:50:56.918 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:50:56.918 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:50:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:50:56.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:50:56.928 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:50:56.938 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 21:50:56.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:50:56.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:50:56.938 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:50:56.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:50:56.948 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 21:50:56.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37912 150\n [Camera]
17-03-17 21:50:57.148 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:50:57.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:50:57.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:50:57.588 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:50:57.588 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:50:57.588 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:50:57.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:50:57.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:50:57.598 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:50:57.598 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:50:57.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:50:57.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37912 825
17-03-17 21:50:57.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:50:57.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:50:57.988 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:50:57.988 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:50:57.988 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:50:57.988 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:50:57.988 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:50:57.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 21:50:57.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:50:57.998 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:50:57.998 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:50:58.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:50:58.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:50:58.148 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:50:58.148 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:50:58.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:50:58.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:50:58.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:50:58.148 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:50:58.268 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:50:58.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 21:50:58.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:50:58.338 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:50:58.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37912 150' command took 2 ms to send, 1383 ms to get response, and 1386 ms overall
17-03-17 21:50:58.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:50:58.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172751347300046. ------
17-03-17 21:50:58.338 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:50:58.338 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17899 mm
17-03-17 21:50:58.338 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:50:58.348 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:50:58.348 -07 000000569 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:50:58.348 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:50:58.348 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:50:58.348 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:50:58.348 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39099, sync = True, waitForSettling = False)
17-03-17 21:50:58.348 -07 000000512 INF: Z Motor: Moving to -0.178984 mm, started at -0.172751 mm, distance = -6.23 um
17-03-17 21:50:58.348 -07 000000382 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:50:58.358 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:50:58.358 -07 000000512 INF: FPGA: Xmit ZDACW 39099\n [Z Motor]
17-03-17 21:50:58.358 -07 000000569 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:50:58.358 -07 000000569 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:50:58.358 -07 000000569 INF: Y Motor: Moving 1332 steps2
17-03-17 21:50:58.358 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:50:58.368 -07 000000512 INF: FPGA: 'ZDACW 39099' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:50:58.368 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:50:58.378 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:50:58.388 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:50:58.388 -07 000000476 INF: FPGA: Recv ZDACR 39099
17-03-17 21:50:58.398 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:50:58.398 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:50:58.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:50:58.548 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:50:58.548 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:50:58.548 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:50:58.548 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:50:58.568 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:50:58.568 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:50:58.658 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:50:58.658 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:50:58.658 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:50:58.668 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:50:58.668 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 21:50:58.748 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:50:58.748 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:50:58.778 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:50:58.788 -07 000000626 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:50:58.788 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:50:58.788 -07 000000569 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:50:58.788 -07 000000569 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:50:58.788 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 21:50:59.738 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:50:59.738 -07 000000012 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:50:59.748 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:50:59.748 -07 000000569 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:50:59.768 -07 000000569 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:50:59.768 -07 000000569 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:50:59.768 -07 000000569 INF: Y Motor: Moved to 60.7324 after 1423 ms (table move)
17-03-17 21:50:59.768 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178984 mm (DAC = 39099)
17-03-17 21:50:59.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.778 -07 000000547 INF: FPGA: Recv ZSGSRD 37156
17-03-17 21:50:59.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:50:59.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.778 -07 000000012 INF: FPGA: Recv ZSGSRD 37156
17-03-17 21:50:59.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:50:59.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.788 -07 000000475 INF: FPGA: Recv ZSGSRD 37150
17-03-17 21:50:59.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.798 -07 000000458 INF: FPGA: Recv ZSGSRD 37149
17-03-17 21:50:59.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.808 -07 000000382 INF: FPGA: Recv ZSGSRD 37155
17-03-17 21:50:59.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.818 -07 000000438 INF: FPGA: Recv ZSGSRD 37155
17-03-17 21:50:59.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.828 -07 000000429 INF: FPGA: Recv ZSGSRD 37154
17-03-17 21:50:59.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.838 -07 000000501 INF: FPGA: Recv ZSGSRD 37144
17-03-17 21:50:59.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.848 -07 000000476 INF: FPGA: Recv ZSGSRD 37145
17-03-17 21:50:59.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:50:59.858 -07 000000626 INF: FPGA: Recv ZSGSRD 37146
17-03-17 21:50:59.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.868 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:50:59.868 -07 000000438 INF: FPGA: Recv ZPIEZORD 33649
17-03-17 21:50:59.878 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:50:59.878 -07 000000431 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.966 V. Piezo Error = -7.8 V.
17-03-17 21:50:59.878 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37151 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37152 (-178.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37144 (-178.0 uncal um), Max = 37156 (-178.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:50:59.878 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37151, posNoise = 5, negNoise = 7
17-03-17 21:50:59.878 -07 000000431 INF: Z Motor: After move to -0.178984, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:50:59.878 -07 000000431 INF: Z Motor: Settle wait time = 1426 ms, measure time = 102 ms (allowed 150 ms), total time = 1528 ms
17-03-17 21:50:59.878 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:50:59.928 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 21:50:59.928 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:50:59.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:50:59.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:50:59.928 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:50:59.928 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:50:59.928 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:50:59.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:50:59.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:50:59.928 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:50:59.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:50:59.938 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:50:59.948 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:50:59.948 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:50:59.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:50:59.998 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:00.198 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:00.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:00.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:00.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:00.238 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:00.238 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:00.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:51:00.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:51:00.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:00.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:00.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:51:00.338 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:00.338 -07 000000429 INF: Autofocus start
17-03-17 21:51:00.338 -07 000000429 INF: MeasureProfile start
17-03-17 21:51:00.338 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:00.348 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:00.348 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:00.348 -07 000000429 INF: MeasureProfile done
17-03-17 21:51:00.348 -07 000000429 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:51:00.348 -07 000000429 INF: Autofocus finished
17-03-17 21:51:00.548 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:00.548 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:00.548 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178989257289696. ----------
17-03-17 21:51:00.548 -07 000000610 INF: Cycle	56	Tile	2	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:00.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37632, sync = True, waitForSettling = True)
17-03-17 21:51:00.558 -07 000000610 INF: Z Motor: Moving to -0.172268 mm, started at -0.178989 mm, distance = 6.72 um
17-03-17 21:51:00.558 -07 000000610 INF: FPGA: Xmit ZDACW 37632\n [Z Motor]
17-03-17 21:51:00.558 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:51:00.568 -07 000000610 INF: FPGA: 'ZDACW 37632' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:00.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:00.568 -07 000000459 INF: FPGA: Recv ZDACR 37632
17-03-17 21:51:00.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:00.718 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.016692,
17-03-17 21:51:00.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.728 -07 000000569 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:51:00.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:00.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.758 -07 000000608 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:51:00.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:00.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.788 -07 000000501 INF: FPGA: Recv ZSGSRD 36103
17-03-17 21:51:00.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:00.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.798 -07 000000608 INF: FPGA: Recv ZSGSRD 36104
17-03-17 21:51:00.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.808 -07 000000569 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:51:00.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.818 -07 000000458 INF: FPGA: Recv ZSGSRD 36110
17-03-17 21:51:00.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.828 -07 000000431 INF: FPGA: Recv ZSGSRD 36108
17-03-17 21:51:00.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:00.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.838 -07 000000424 INF: FPGA: Recv ZSGSRD 36108
17-03-17 21:51:00.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:51:00.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:00.858 -07 000000476 INF: FPGA: Recv ZSGSRD 36105
17-03-17 21:51:00.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:00.868 -07 000000512 INF: FPGA: Recv ZPIEZORD 32244
17-03-17 21:51:00.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:00.878 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.5 V.
17-03-17 21:51:00.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36106 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36107 (-171.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36103 (-171.4 uncal um), Max = 36110 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:51:00.878 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36106, posNoise = 4, negNoise = 3
17-03-17 21:51:00.878 -07 000000610 INF: Z Motor: After move to -0.172268, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:00.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-17 21:51:00.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:00.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:00.878 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:00.878 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:00.878 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:00.878 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:00.878 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:00.878 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:00.878 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:00.878 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:00.878 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:00.878 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:00.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:00.888 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:00.888 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:51:00.888 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:00.898 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:51:00.898 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:51:00.898 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:51:00.898 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:51:00.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37809 150\n [Camera]
17-03-17 21:51:01.098 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:01.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:01.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:01.548 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:01.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:01.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:01.548 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:01.558 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:01.558 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:01.558 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:01.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:01.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37809 825
17-03-17 21:51:01.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:01.918 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:01.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:51:01.948 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:51:01.948 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:01.948 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:01.948 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:51:01.958 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:51:01.958 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:51:01.958 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:01.958 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:01.968 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:51:02.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:51:02.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:51:02.098 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:02.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:51:02.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:51:02.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:02.108 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:02.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2299134328, 0x0, 418435064) start.
17-03-17 21:51:02.108 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:02.108 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:51:02.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:51:02.288 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:02.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37809 150' command took 2 ms to send, 1379 ms to get response, and 1389 ms overall
17-03-17 21:51:02.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:02.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.172275955601556. ------
17-03-17 21:51:02.298 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:02.408 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17862 mm
17-03-17 21:51:02.408 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:02.418 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:02.418 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 113 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:51:02.418 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:51:02.418 -07 000000429 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:51:02.418 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:02.418 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 39019, sync = True, waitForSettling = False)
17-03-17 21:51:02.418 -07 000000501 INF: Z Motor: Moving to -0.178618 mm, started at -0.172276 mm, distance = -6.34 um
17-03-17 21:51:02.428 -07 000000501 INF: FPGA: Xmit ZDACW 39019\n [Z Motor]
17-03-17 21:51:02.428 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:51:02.438 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:02.438 -07 000000501 INF: FPGA: 'ZDACW 39019' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:51:02.438 -07 000000012 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:51:02.448 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:51:02.448 -07 000000429 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:02.448 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:02.448 -07 000000438 INF: FPGA: Recv ZDACR 39019
17-03-17 21:51:02.448 -07 000000429 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:02.448 -07 000000429 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:51:02.458 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:02.458 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:51:02.458 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:02.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2299134328, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:51:02.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:51:02.498 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:02.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:51:02.508 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:51:02.508 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:02.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:02.508 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:02.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:51:02.518 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:51:02.618 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:02.618 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:51:02.828 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:51:02.828 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:51:02.868 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:02.878 -07 000000547 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:51:02.878 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:02.878 -07 000000429 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:02.878 -07 000000429 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:51:02.878 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.182 mm/sec
17-03-17 21:51:03.828 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:03.828 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:51:03.838 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:03.838 -07 000000429 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:03.858 -07 000000429 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:03.858 -07 000000429 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:51:03.858 -07 000000429 INF: Y Motor: Moved to 61.5635 after 1441 ms (table move)
17-03-17 21:51:03.858 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178618 mm (DAC = 39019)
17-03-17 21:51:03.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.868 -07 000000608 INF: FPGA: Recv ZSGSRD 37105
17-03-17 21:51:03.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:51:03.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.868 -07 000000569 INF: FPGA: Recv ZSGSRD 37097
17-03-17 21:51:03.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.878 -07 000000458 INF: FPGA: Recv ZSGSRD 37095
17-03-17 21:51:03.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.888 -07 000000547 INF: FPGA: Recv ZSGSRD 37096
17-03-17 21:51:03.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.898 -07 000000626 INF: FPGA: Recv ZSGSRD 37088
17-03-17 21:51:03.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.908 -07 000000431 INF: FPGA: Recv ZSGSRD 37103
17-03-17 21:51:03.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.918 -07 000000569 INF: FPGA: Recv ZSGSRD 37092
17-03-17 21:51:03.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.928 -07 000000458 INF: FPGA: Recv ZSGSRD 37093
17-03-17 21:51:03.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.938 -07 000000547 INF: FPGA: Recv ZSGSRD 37093
17-03-17 21:51:03.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:03.948 -07 000000415 INF: FPGA: Recv ZSGSRD 37096
17-03-17 21:51:03.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.958 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:03.958 -07 000000480 INF: FPGA: Recv ZPIEZORD 33575
17-03-17 21:51:03.968 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:03.968 -07 000000382 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.954 V. Piezo Error = -7.8 V.
17-03-17 21:51:03.968 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37096 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37096 (-177.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37088 (-177.7 uncal um), Max = 37105 (-177.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:51:03.968 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37096, posNoise = 9, negNoise = 8
17-03-17 21:51:03.968 -07 000000382 INF: Z Motor: After move to -0.178618, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:03.968 -07 000000382 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:51:03.968 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:04.018 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 21:51:04.018 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:04.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:04.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:04.018 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:04.018 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:04.018 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:04.018 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:04.018 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:51:04.018 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:04.028 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:04.028 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:04.028 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:51:04.028 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:51:04.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:04.078 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:04.278 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:04.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:04.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:04.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:04.318 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:04.318 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:04.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:51:04.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:51:04.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:04.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:04.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:51:04.418 -07 000000627 INF: Autofocus start
17-03-17 21:51:04.418 -07 000000627 INF: MeasureProfile start
17-03-17 21:51:04.418 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:04.418 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:04.428 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:51:04.428 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:04.428 -07 000000627 INF: MeasureProfile done
17-03-17 21:51:04.428 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:51:04.428 -07 000000627 INF: Autofocus finished
17-03-17 21:51:04.628 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:04.628 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:04.628 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178635925621899. ----------
17-03-17 21:51:04.628 -07 000000610 INF: Cycle	56	Tile	3	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:04.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37516, sync = True, waitForSettling = True)
17-03-17 21:51:04.638 -07 000000610 INF: Z Motor: Moving to -0.171737 mm, started at -0.178636 mm, distance = 6.90 um
17-03-17 21:51:04.638 -07 000000610 INF: FPGA: Xmit ZDACW 37516\n [Z Motor]
17-03-17 21:51:04.638 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:51:04.648 -07 000000610 INF: FPGA: 'ZDACW 37516' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:04.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:04.648 -07 000000627 INF: FPGA: Recv ZDACR 37516
17-03-17 21:51:04.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.808 -07 000000608 INF: FPGA: Recv ZSGSRD 36024
17-03-17 21:51:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:51:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.828 -07 000000438 INF: FPGA: Recv ZSGSRD 36015
17-03-17 21:51:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.838 -07 000000476 INF: FPGA: Recv ZSGSRD 36029
17-03-17 21:51:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.848 -07 000000512 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:51:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36026
17-03-17 21:51:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.868 -07 000000012 INF: FPGA: Recv ZSGSRD 36026
17-03-17 21:51:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.878 -07 000000438 INF: FPGA: Recv ZSGSRD 36018
17-03-17 21:51:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.888 -07 000000415 INF: FPGA: Recv ZSGSRD 36024
17-03-17 21:51:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:04.898 -07 000000382 INF: FPGA: Recv ZSGSRD 36027
17-03-17 21:51:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:04.908 -07 000000576 INF: FPGA: Recv ZPIEZORD 32158
17-03-17 21:51:04.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:04.918 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -8.5 V.
17-03-17 21:51:04.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36023 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36015 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:51:04.918 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36023, posNoise = 6, negNoise = 8
17-03-17 21:51:04.918 -07 000000610 INF: Z Motor: After move to -0.171737, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:04.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:51:04.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:04.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:04.918 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:04.918 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:04.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:04.918 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:04.918 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:04.918 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:04.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:51:04.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:04.918 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:04.918 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:04.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:04.918 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:04.928 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:51:04.928 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:04.928 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:51:04.928 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:51:04.938 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:51:04.938 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:04.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37693 150\n [Camera]
17-03-17 21:51:05.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:05.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:05.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:05.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:05.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:05.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:05.578 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:05.578 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:05.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:05.588 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:05.588 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:05.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37693 825
17-03-17 21:51:05.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:05.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:51:05.958 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:51:05.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:05.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:51:05.968 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:51:05.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:05.968 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:05.968 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:05.968 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:51:05.978 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:51:06.108 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.977204,
17-03-17 21:51:06.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:06.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:06.128 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:06.128 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:06.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2334556592, 0x0, 391868352) start.
17-03-17 21:51:06.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:06.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:06.138 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:06.138 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:06.138 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:51:06.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:06.318 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:06.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37693 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-17 21:51:06.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:06.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.17174274599379. ------
17-03-17 21:51:06.328 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17806 mm
17-03-17 21:51:06.328 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:06.328 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:06.328 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:51:06.328 -07 000000424 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:51:06.338 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:06.338 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:06.338 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:06.338 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38897, sync = True, waitForSettling = False)
17-03-17 21:51:06.338 -07 000000438 INF: Z Motor: Moving to -0.178059 mm, started at -0.171743 mm, distance = -6.32 um
17-03-17 21:51:06.338 -07 000000626 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:51:06.348 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:06.348 -07 000000424 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:06.348 -07 000000424 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:06.348 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:51:06.348 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:06.358 -07 000000438 INF: FPGA: Xmit ZDACW 38897\n [Z Motor]
17-03-17 21:51:06.358 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:51:06.368 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:06.368 -07 000000438 INF: FPGA: 'ZDACW 38897' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:06.378 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:06.378 -07 000000480 INF: FPGA: Recv ZDACR 38897
17-03-17 21:51:06.388 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:06.388 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:51:06.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2334556592, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:51:06.528 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:51:06.528 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:06.528 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:51:06.528 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:51:06.528 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:06.538 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:06.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:51:06.538 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:51:06.538 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:51:06.548 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:06.548 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:51:06.738 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:51:06.738 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:51:06.778 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:06.778 -07 000000431 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:51:06.788 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:06.788 -07 000000424 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:06.788 -07 000000424 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:51:06.788 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:51:06.918 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:06.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:07.738 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:07.738 -07 000000627 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:51:07.748 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.748 -07 000000424 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:07.768 -07 000000424 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:07.768 -07 000000424 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:07.768 -07 000000424 INF: Y Motor: Moved to 62.3950 after 1433 ms (table move)
17-03-17 21:51:07.768 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178059 mm (DAC = 38897)
17-03-17 21:51:07.768 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.778 -07 000000431 INF: FPGA: Recv ZSGSRD 37011
17-03-17 21:51:07.778 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:51:07.778 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.778 -07 000000012 INF: FPGA: Recv ZSGSRD 37010
17-03-17 21:51:07.788 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.788 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.788 -07 000000480 INF: FPGA: Recv ZSGSRD 37012
17-03-17 21:51:07.798 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.798 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.798 -07 000000424 INF: FPGA: Recv ZSGSRD 37012
17-03-17 21:51:07.808 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.808 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.808 -07 000000458 INF: FPGA: Recv ZSGSRD 37009
17-03-17 21:51:07.818 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.818 -07 000000476 INF: FPGA: Recv ZSGSRD 37008
17-03-17 21:51:07.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.828 -07 000000547 INF: FPGA: Recv ZSGSRD 37007
17-03-17 21:51:07.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.838 -07 000000512 INF: FPGA: Recv ZSGSRD 37000
17-03-17 21:51:07.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.848 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.848 -07 000000475 INF: FPGA: Recv ZSGSRD 37007
17-03-17 21:51:07.858 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.858 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:07.858 -07 000000480 INF: FPGA: Recv ZSGSRD 37009
17-03-17 21:51:07.868 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.868 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:07.868 -07 000000431 INF: FPGA: Recv ZPIEZORD 33473
17-03-17 21:51:07.878 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:07.878 -07 000000569 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.935 V. Piezo Error = -7.8 V.
17-03-17 21:51:07.878 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37008 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37009 (-177.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37000 (-177.1 uncal um), Max = 37012 (-177.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:51:07.878 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37008, posNoise = 4, negNoise = 8
17-03-17 21:51:07.878 -07 000000569 INF: Z Motor: After move to -0.178059, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:07.878 -07 000000569 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:51:07.878 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:07.928 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:51:07.928 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:07.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:07.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:07.928 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:07.928 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:07.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:07.928 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:07.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:07.928 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:07.938 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:07.938 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:07.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:51:07.948 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:51:07.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:07.998 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:08.198 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:08.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:08.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:08.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:51:08.238 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:08.238 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:08.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:51:08.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:51:08.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:08.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:51:08.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:51:08.338 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:08.338 -07 000000476 INF: Autofocus start
17-03-17 21:51:08.338 -07 000000476 INF: MeasureProfile start
17-03-17 21:51:08.338 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:08.348 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:08.348 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:08.348 -07 000000476 INF: MeasureProfile done
17-03-17 21:51:08.348 -07 000000476 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:08.348 -07 000000476 INF: Autofocus finished
17-03-17 21:51:08.548 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:08.548 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:08.548 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178070594953424. ----------
17-03-17 21:51:08.548 -07 000000610 INF: Cycle	56	Tile	4	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:08.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37412, sync = True, waitForSettling = True)
17-03-17 21:51:08.558 -07 000000610 INF: Z Motor: Moving to -0.171261 mm, started at -0.178071 mm, distance = 6.81 um
17-03-17 21:51:08.558 -07 000000610 INF: FPGA: Xmit ZDACW 37412\n [Z Motor]
17-03-17 21:51:08.558 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:51:08.568 -07 000000610 INF: FPGA: 'ZDACW 37412' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:08.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:08.568 -07 000000459 INF: FPGA: Recv ZDACR 37412
17-03-17 21:51:08.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.728 -07 000000501 INF: FPGA: Recv ZSGSRD 35951
17-03-17 21:51:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.738 -07 000000382 INF: FPGA: Recv ZSGSRD 35954
17-03-17 21:51:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.748 -07 000000512 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:51:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.758 -07 000000459 INF: FPGA: Recv ZSGSRD 35950
17-03-17 21:51:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.768 -07 000000475 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:51:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.778 -07 000000476 INF: FPGA: Recv ZSGSRD 35948
17-03-17 21:51:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.788 -07 000000415 INF: FPGA: Recv ZSGSRD 35950
17-03-17 21:51:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.798 -07 000000576 INF: FPGA: Recv ZSGSRD 35953
17-03-17 21:51:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.808 -07 000000608 INF: FPGA: Recv ZSGSRD 35944
17-03-17 21:51:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:08.818 -07 000000429 INF: FPGA: Recv ZSGSRD 35951
17-03-17 21:51:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:08.828 -07 000000627 INF: FPGA: Recv ZPIEZORD 32053
17-03-17 21:51:08.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:08.838 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -8.6 V.
17-03-17 21:51:08.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35950 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35951 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35944 (-170.4 uncal um), Max = 35954 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:08.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35950, posNoise = 4, negNoise = 6
17-03-17 21:51:08.838 -07 000000610 INF: Z Motor: After move to -0.171261, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:08.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:51:08.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:08.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:08.838 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:08.838 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:08.838 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:08.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:08.838 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:08.838 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:08.838 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:08.838 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:08.838 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:51:08.838 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:08.848 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:08.848 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:08.848 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:08.848 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:08.858 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:51:08.858 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:08.858 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:51:08.858 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:51:08.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37589 150\n [Camera]
17-03-17 21:51:09.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:09.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:09.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:09.498 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:09.498 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:09.498 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:51:09.498 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:09.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:09.508 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:09.508 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:09.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:51:09.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37589 825
17-03-17 21:51:09.838 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:09.878 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:51:09.878 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:51:09.878 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:09.878 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:09.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:51:09.888 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:51:09.888 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:51:09.888 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:09.888 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:09.898 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:51:10.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:10.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:10.048 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:10.048 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:10.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:51:10.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:10.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:10.058 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:10.058 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:10.058 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:51:10.238 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:10.248 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:10.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37589 150' command took 2 ms to send, 1380 ms to get response, and 1387 ms overall
17-03-17 21:51:10.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:10.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171273778507441. ------
17-03-17 21:51:10.248 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:10.248 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17784 mm
17-03-17 21:51:10.248 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:10.358 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:10.358 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 110 ms overall
17-03-17 21:51:10.358 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:10.358 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38848, sync = True, waitForSettling = False)
17-03-17 21:51:10.358 -07 000000576 INF: Z Motor: Moving to -0.177835 mm, started at -0.171274 mm, distance = -6.56 um
17-03-17 21:51:10.358 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:51:10.358 -07 000000547 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:51:10.368 -07 000000576 INF: FPGA: Xmit ZDACW 38848\n [Z Motor]
17-03-17 21:51:10.368 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:51:10.378 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:10.378 -07 000000576 INF: FPGA: 'ZDACW 38848' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:51:10.378 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:51:10.388 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:10.388 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:51:10.388 -07 000000547 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:10.388 -07 000000547 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:10.388 -07 000000547 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:51:10.388 -07 000000608 INF: FPGA: Recv ZDACR 38848
17-03-17 21:51:10.398 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:10.398 -07 000000576 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 21:51:10.398 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:10.448 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:51:10.448 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:51:10.448 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:10.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:51:10.448 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:51:10.448 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:10.458 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:10.458 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:51:10.458 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:51:10.458 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:51:10.558 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:10.558 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-17 21:51:10.768 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:51:10.768 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:51:10.808 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:10.808 -07 000000382 INF: FPGA: Recv YRDPOS 129481
17-03-17 21:51:10.818 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:10.818 -07 000000547 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:10.818 -07 000000547 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:51:10.818 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 21:51:11.468 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.996267,
17-03-17 21:51:11.768 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:11.768 -07 000000415 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:51:11.778 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:11.778 -07 000000547 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:11.798 -07 000000547 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:11.798 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:51:11.798 -07 000000547 INF: Y Motor: Moved to 63.2236 after 1438 ms (table move)
17-03-17 21:51:11.808 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177835 mm (DAC = 38848)
17-03-17 21:51:11.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.828 -07 000000438 INF: FPGA: Recv ZSGSRD 36974
17-03-17 21:51:11.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:51:11.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36985
17-03-17 21:51:11.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.848 -07 000000608 INF: FPGA: Recv ZSGSRD 36974
17-03-17 21:51:11.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.858 -07 000000431 INF: FPGA: Recv ZSGSRD 36971
17-03-17 21:51:11.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.868 -07 000000429 INF: FPGA: Recv ZSGSRD 36973
17-03-17 21:51:11.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.878 -07 000000576 INF: FPGA: Recv ZSGSRD 36972
17-03-17 21:51:11.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.888 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36970
17-03-17 21:51:11.898 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.898 -07 000000608 INF: FPGA: Recv ZSGSRD 36972
17-03-17 21:51:11.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.908 -07 000000476 INF: FPGA: Recv ZSGSRD 36978
17-03-17 21:51:11.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.918 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:11.918 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:11.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:11.918 -07 000000480 INF: FPGA: Recv ZSGSRD 36977
17-03-17 21:51:11.928 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.928 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:11.928 -07 000000475 INF: FPGA: Recv ZPIEZORD 33422
17-03-17 21:51:11.938 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:11.938 -07 000000459 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.928 V. Piezo Error = -7.9 V.
17-03-17 21:51:11.938 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36975 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36974 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36970 (-176.9 uncal um), Max = 36985 (-177.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:11.938 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36975, posNoise = 10, negNoise = 5
17-03-17 21:51:11.938 -07 000000459 INF: Z Motor: After move to -0.177835, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:11.938 -07 000000459 INF: Z Motor: Settle wait time = 1443 ms, measure time = 130 ms (allowed 150 ms), total time = 1573 ms
17-03-17 21:51:11.938 -07 000000459 INF: Z Motor: Waiting extra 20 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:11.958 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 21:51:11.958 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:11.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:11.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:11.958 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:11.958 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:11.958 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:11.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:11.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:11.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:11.968 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:11.968 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:11.978 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:51:11.978 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:51:11.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:12.018 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:12.218 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:12.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:12.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:12.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:12.258 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:12.258 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:12.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:51:12.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:51:12.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:12.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:12.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:51:12.358 -07 000000415 INF: Autofocus start
17-03-17 21:51:12.358 -07 000000415 INF: MeasureProfile start
17-03-17 21:51:12.358 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:12.358 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:12.368 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:12.368 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:12.368 -07 000000415 INF: MeasureProfile done
17-03-17 21:51:12.368 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:12.368 -07 000000415 INF: Autofocus finished
17-03-17 21:51:12.568 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:12.568 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:12.568 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177858595952746. ----------
17-03-17 21:51:12.568 -07 000000610 INF: Cycle	56	Tile	5	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:12.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37363, sync = True, waitForSettling = True)
17-03-17 21:51:12.578 -07 000000610 INF: Z Motor: Moving to -0.171037 mm, started at -0.177859 mm, distance = 6.82 um
17-03-17 21:51:12.578 -07 000000610 INF: FPGA: Xmit ZDACW 37363\n [Z Motor]
17-03-17 21:51:12.578 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:51:12.588 -07 000000610 INF: FPGA: 'ZDACW 37363' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:12.588 -07 000000431 INF: FPGA: Recv ZDACR 37363
17-03-17 21:51:12.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.748 -07 000000569 INF: FPGA: Recv ZSGSRD 35914
17-03-17 21:51:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.758 -07 000000480 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:51:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.768 -07 000000626 INF: FPGA: Recv ZSGSRD 35919
17-03-17 21:51:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.778 -07 000000458 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:51:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.788 -07 000000475 INF: FPGA: Recv ZSGSRD 35923
17-03-17 21:51:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35919
17-03-17 21:51:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:51:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.818 -07 000000438 INF: FPGA: Recv ZSGSRD 35914
17-03-17 21:51:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.828 -07 000000608 INF: FPGA: Recv ZSGSRD 35914
17-03-17 21:51:12.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:12.838 -07 000000576 INF: FPGA: Recv ZSGSRD 35923
17-03-17 21:51:12.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:12.848 -07 000000626 INF: FPGA: Recv ZPIEZORD 32002
17-03-17 21:51:12.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:12.858 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -8.6 V.
17-03-17 21:51:12.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35914 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35910 (-170.1 uncal um), Max = 35923 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:12.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 7, negNoise = 6
17-03-17 21:51:12.858 -07 000000610 INF: Z Motor: After move to -0.171037, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:12.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:51:12.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:12.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:12.858 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:12.858 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:12.858 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:12.858 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:12.858 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:12.858 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:12.858 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:12.858 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:12.858 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:12.858 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:12.858 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:51:12.858 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:12.868 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:12.868 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:12.868 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:51:12.868 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:12.878 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:51:12.878 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:51:12.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37540 150\n [Camera]
17-03-17 21:51:13.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:13.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:13.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:13.518 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:13.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:13.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:13.518 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:13.528 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:13.528 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:13.528 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:13.528 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) start.
17-03-17 21:51:13.708 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37540 825
17-03-17 21:51:13.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:13.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:51:13.898 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:51:13.898 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:13.898 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:51:13.898 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:51:13.898 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:13.908 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:13.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:13.908 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:51:13.908 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:51:14.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:14.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:14.078 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:14.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:14.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:14.078 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:14.078 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:14.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:14.088 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:14.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2334294336, 0x0, 391868352) start.
17-03-17 21:51:14.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:51:14.268 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:14.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37540 150' command took 3 ms to send, 1381 ms to get response, and 1388 ms overall
17-03-17 21:51:14.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:14.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.171055355294621. ------
17-03-17 21:51:14.388 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:14.388 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17740 mm
17-03-17 21:51:14.388 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:14.388 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:51:14.388 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38753, sync = True, waitForSettling = False)
17-03-17 21:51:14.388 -07 000000424 INF: Z Motor: Moving to -0.177400 mm, started at -0.171055 mm, distance = -6.34 um
17-03-17 21:51:14.388 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:51:14.398 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:14.398 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:14.398 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 21:51:14.398 -07 000000475 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:51:14.408 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:14.408 -07 000000501 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:14.408 -07 000000424 INF: FPGA: Xmit ZDACW 38753\n [Z Motor]
17-03-17 21:51:14.408 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:14.408 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:51:14.408 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:51:14.418 -07 000000424 INF: FPGA: 'ZDACW 38753' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:51:14.418 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:14.428 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:14.438 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:14.438 -07 000000438 INF: FPGA: Recv ZDACR 38753
17-03-17 21:51:14.448 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:14.448 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:51:14.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:51:14.478 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:51:14.478 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:14.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2334294336, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:51:14.478 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:51:14.478 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:14.478 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:14.488 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:14.488 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:51:14.488 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:51:14.618 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:14.618 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 21:51:14.798 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:51:14.798 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-17 21:51:14.838 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:14.848 -07 000000424 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:51:14.848 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:14.848 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:14.848 -07 000000501 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:51:14.848 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.119 mm/sec
17-03-17 21:51:15.798 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:15.798 -07 000000480 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:51:15.808 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:15.808 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:15.828 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:15.828 -07 000000501 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:15.828 -07 000000501 INF: Y Motor: Moved to 64.0562 after 1434 ms (table move)
17-03-17 21:51:15.828 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177400 mm (DAC = 38753)
17-03-17 21:51:15.828 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36911
17-03-17 21:51:15.838 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:51:15.838 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.838 -07 000000458 INF: FPGA: Recv ZSGSRD 36903
17-03-17 21:51:15.848 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.848 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36906
17-03-17 21:51:15.858 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36911
17-03-17 21:51:15.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.868 -07 000000480 INF: FPGA: Recv ZSGSRD 36903
17-03-17 21:51:15.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.878 -07 000000608 INF: FPGA: Recv ZSGSRD 36904
17-03-17 21:51:15.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.888 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.888 -07 000000475 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:51:15.898 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.898 -07 000000431 INF: FPGA: Recv ZSGSRD 36899
17-03-17 21:51:15.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.908 -07 000000476 INF: FPGA: Recv ZSGSRD 36901
17-03-17 21:51:15.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:15.918 -07 000000501 INF: FPGA: Recv ZSGSRD 36905
17-03-17 21:51:15.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.928 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:15.928 -07 000000438 INF: FPGA: Recv ZPIEZORD 33335
17-03-17 21:51:15.938 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:15.938 -07 000000429 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -7.9 V.
17-03-17 21:51:15.938 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36904 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36904 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36899 (-176.5 uncal um), Max = 36911 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:15.938 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36904, posNoise = 7, negNoise = 5
17-03-17 21:51:15.938 -07 000000429 INF: Z Motor: After move to -0.177400, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:15.938 -07 000000429 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:51:15.938 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:15.988 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:51:15.988 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:15.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:15.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:15.988 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:15.988 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:15.988 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:15.988 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:15.988 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:15.988 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:15.998 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:15.998 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:16.008 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:51:16.008 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:51:16.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:16.048 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:16.248 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:16.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:16.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:16.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:16.298 -07 000000431 INF: FPGA: Recv @CAMSNAP 283
17-03-17 21:51:16.298 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:16.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 21:51:16.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:51:16.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:16.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:16.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:51:16.398 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:16.398 -07 000000415 INF: Autofocus start
17-03-17 21:51:16.398 -07 000000415 INF: MeasureProfile start
17-03-17 21:51:16.408 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:16.408 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:16.408 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:16.408 -07 000000415 INF: MeasureProfile done
17-03-17 21:51:16.408 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:16.408 -07 000000415 INF: Autofocus finished
17-03-17 21:51:16.608 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:16.608 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:16.608 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177402476890681. ----------
17-03-17 21:51:16.618 -07 000000610 INF: Cycle	56	Tile	6	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:16.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37268, sync = True, waitForSettling = True)
17-03-17 21:51:16.618 -07 000000610 INF: Z Motor: Moving to -0.170602 mm, started at -0.177402 mm, distance = 6.80 um
17-03-17 21:51:16.618 -07 000000610 INF: FPGA: Xmit ZDACW 37268\n [Z Motor]
17-03-17 21:51:16.618 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:51:16.628 -07 000000610 INF: FPGA: 'ZDACW 37268' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:16.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:16.628 -07 000000438 INF: FPGA: Recv ZDACR 37268
17-03-17 21:51:16.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.788 -07 000000626 INF: FPGA: Recv ZSGSRD 35851
17-03-17 21:51:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.798 -07 000000547 INF: FPGA: Recv ZSGSRD 35852
17-03-17 21:51:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.808 -07 000000415 INF: FPGA: Recv ZSGSRD 35845
17-03-17 21:51:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.818 -07 000000458 INF: FPGA: Recv ZSGSRD 35845
17-03-17 21:51:16.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.838 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.02213,
17-03-17 21:51:16.838 -07 000000475 INF: FPGA: Recv ZSGSRD 35856
17-03-17 21:51:16.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:16.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.868 -07 000000501 INF: FPGA: Recv ZSGSRD 35849
17-03-17 21:51:16.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:16.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35849
17-03-17 21:51:16.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.898 -07 000000459 INF: FPGA: Recv ZSGSRD 35845
17-03-17 21:51:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.908 -07 000000475 INF: FPGA: Recv ZSGSRD 35851
17-03-17 21:51:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.918 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:16.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:16.928 -07 000000501 INF: FPGA: Recv ZSGSRD 35844
17-03-17 21:51:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:16.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:16.938 -07 000000626 INF: FPGA: Recv ZPIEZORD 31912
17-03-17 21:51:16.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:16.948 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.7 V.
17-03-17 21:51:16.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35849 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35849 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35844 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:16.948 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35849, posNoise = 7, negNoise = 5
17-03-17 21:51:16.948 -07 000000610 INF: Z Motor: After move to -0.170602, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:16.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 21:51:16.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:16.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:16.948 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:16.948 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:16.948 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:16.948 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:16.948 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:16.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:16.948 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:16.948 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:16.948 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:16.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:16.948 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:51:16.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:16.948 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:16.958 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:16.958 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:51:16.958 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:51:16.958 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:51:16.958 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:16.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37445 150\n [Camera]
17-03-17 21:51:17.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:17.608 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:17.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:17.608 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:17.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:17.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:17.608 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:17.618 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:17.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:17.618 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:17.618 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) start.
17-03-17 21:51:17.798 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37445 825
17-03-17 21:51:17.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:17.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:51:17.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:51:17.988 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:17.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:51:17.998 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:51:17.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:17.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:17.998 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:51:17.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:18.008 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:51:18.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:18.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:18.168 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:18.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:18.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:18.168 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:18.168 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:18.168 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:18.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:51:18.168 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2369716600, 0x0, 391868352) start.
17-03-17 21:51:18.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:18.358 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:18.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37445 150' command took 2 ms to send, 1380 ms to get response, and 1386 ms overall
17-03-17 21:51:18.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:18.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.170624933081124. ------
17-03-17 21:51:18.358 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17714 mm
17-03-17 21:51:18.358 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:18.358 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:18.358 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:51:18.358 -07 000000475 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 21:51:18.368 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:18.368 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:18.368 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:18.368 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38697, sync = True, waitForSettling = False)
17-03-17 21:51:18.368 -07 000000480 INF: Z Motor: Moving to -0.177144 mm, started at -0.170625 mm, distance = -6.52 um
17-03-17 21:51:18.368 -07 000000547 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:51:18.378 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:18.378 -07 000000475 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:18.378 -07 000000480 INF: FPGA: Xmit ZDACW 38697\n [Z Motor]
17-03-17 21:51:18.378 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:51:18.378 -07 000000475 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:18.378 -07 000000475 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:51:18.388 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:18.388 -07 000000480 INF: FPGA: 'ZDACW 38697' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:18.398 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:18.408 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:18.408 -07 000000382 INF: FPGA: Recv ZDACR 38697
17-03-17 21:51:18.418 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:18.418 -07 000000480 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:51:18.568 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 21:51:18.568 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:51:18.568 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:18.568 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2369716600, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:51:18.568 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:51:18.568 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:18.578 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:18.578 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:18.578 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:51:18.578 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:51:18.588 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:18.588 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:51:18.768 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:51:18.768 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:51:18.808 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:18.818 -07 000000547 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:51:18.818 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:18.818 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:18.818 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:51:18.818 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.836 mm, average velocity = 2.123 mm/sec
17-03-17 21:51:19.768 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:19.768 -07 000000459 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:51:19.778 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:19.778 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:19.798 -07 000000475 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:19.798 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:19.798 -07 000000475 INF: Y Motor: Moved to 64.8784 after 1434 ms (table move)
17-03-17 21:51:19.798 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177144 mm (DAC = 38697)
17-03-17 21:51:19.798 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.808 -07 000000512 INF: FPGA: Recv ZSGSRD 36868
17-03-17 21:51:19.808 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:51:19.808 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.808 -07 000000569 INF: FPGA: Recv ZSGSRD 36866
17-03-17 21:51:19.818 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:19.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36865
17-03-17 21:51:19.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.828 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.828 -07 000000438 INF: FPGA: Recv ZSGSRD 36868
17-03-17 21:51:19.838 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.838 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.838 -07 000000476 INF: FPGA: Recv ZSGSRD 36863
17-03-17 21:51:19.848 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.848 -07 000000512 INF: FPGA: Recv ZSGSRD 36862
17-03-17 21:51:19.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.858 -07 000000382 INF: FPGA: Recv ZSGSRD 36872
17-03-17 21:51:19.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.868 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.868 -07 000000415 INF: FPGA: Recv ZSGSRD 36861
17-03-17 21:51:19.878 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.878 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.878 -07 000000547 INF: FPGA: Recv ZSGSRD 36859
17-03-17 21:51:19.888 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.888 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:19.888 -07 000000424 INF: FPGA: Recv ZSGSRD 36859
17-03-17 21:51:19.898 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.898 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:19.898 -07 000000415 INF: FPGA: Recv ZPIEZORD 33278
17-03-17 21:51:19.908 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:19.908 -07 000000458 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.0 V.
17-03-17 21:51:19.908 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36864 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36859 (-176.2 uncal um), Max = 36872 (-176.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:19.908 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36864, posNoise = 8, negNoise = 5
17-03-17 21:51:19.908 -07 000000458 INF: Z Motor: After move to -0.177144, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:19.908 -07 000000458 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:51:19.908 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:19.958 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:51:19.958 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:19.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:19.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:19.958 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:19.958 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:19.958 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:19.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:19.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:19.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:19.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:19.968 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:19.978 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:51:19.978 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:51:19.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:20.028 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:20.228 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:20.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:20.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:20.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:51:20.268 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:20.268 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:20.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:51:20.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:51:20.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:20.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:51:20.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:51:20.368 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:20.368 -07 000000458 INF: Autofocus start
17-03-17 21:51:20.368 -07 000000458 INF: MeasureProfile start
17-03-17 21:51:20.368 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:20.378 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:20.378 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:20.378 -07 000000458 INF: MeasureProfile done
17-03-17 21:51:20.378 -07 000000458 INF: X=-32  Z correction [um]=-0.2344
17-03-17 21:51:20.378 -07 000000458 INF: Autofocus finished
17-03-17 21:51:20.578 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:20.578 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:20.578 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177145508405011. ----------
17-03-17 21:51:20.578 -07 000000610 INF: Cycle	56	Tile	7	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:20.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37158, sync = True, waitForSettling = True)
17-03-17 21:51:20.588 -07 000000610 INF: Z Motor: Moving to -0.170098 mm, started at -0.177146 mm, distance = 7.05 um
17-03-17 21:51:20.588 -07 000000610 INF: FPGA: Xmit ZDACW 37158\n [Z Motor]
17-03-17 21:51:20.588 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:51:20.598 -07 000000610 INF: FPGA: 'ZDACW 37158' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:20.598 -07 000000501 INF: FPGA: Recv ZDACR 37158
17-03-17 21:51:20.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:20.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.758 -07 000000626 INF: FPGA: Recv ZSGSRD 35771
17-03-17 21:51:20.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.768 -07 000000475 INF: FPGA: Recv ZSGSRD 35765
17-03-17 21:51:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35768
17-03-17 21:51:20.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.788 -07 000000012 INF: FPGA: Recv ZSGSRD 35766
17-03-17 21:51:20.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.798 -07 000000501 INF: FPGA: Recv ZSGSRD 35770
17-03-17 21:51:20.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.808 -07 000000382 INF: FPGA: Recv ZSGSRD 35765
17-03-17 21:51:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.818 -07 000000576 INF: FPGA: Recv ZSGSRD 35767
17-03-17 21:51:20.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.828 -07 000000459 INF: FPGA: Recv ZSGSRD 35769
17-03-17 21:51:20.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.838 -07 000000626 INF: FPGA: Recv ZSGSRD 35767
17-03-17 21:51:20.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:20.848 -07 000000480 INF: FPGA: Recv ZSGSRD 35769
17-03-17 21:51:20.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:20.858 -07 000000547 INF: FPGA: Recv ZPIEZORD 31817
17-03-17 21:51:20.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:20.868 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.7 V.
17-03-17 21:51:20.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35768 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35768 (-169.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35765 (-169.2 uncal um), Max = 35771 (-169.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:51:20.868 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35768, posNoise = 3, negNoise = 3
17-03-17 21:51:20.868 -07 000000610 INF: Z Motor: After move to -0.170098, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:20.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:51:20.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:20.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:20.868 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:20.868 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:20.868 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:20.868 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:20.868 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:20.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:20.868 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:20.868 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:20.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:20.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:20.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:20.878 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:20.878 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:20.878 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:20.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:51:20.888 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:51:20.888 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 21:51:20.888 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:51:20.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37335 150\n [Camera]
17-03-17 21:51:21.088 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:21.528 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:21.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:21.528 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:21.528 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:21.528 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:51:21.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:21.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:21.538 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:21.538 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:21.538 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:51:21.728 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37335 825
17-03-17 21:51:21.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:21.908 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:51:21.908 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:51:21.908 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:21.908 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:51:21.908 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:51:21.908 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:21.918 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:21.918 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:21.918 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:51:21.918 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:21.918 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:51:22.088 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:22.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:22.088 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:22.088 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:22.088 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:51:22.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:22.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:22.088 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:22.088 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:22.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:51:22.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:22.388 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:22.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37335 150' command took 2 ms to send, 1488 ms to get response, and 1501 ms overall
17-03-17 21:51:22.388 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.019446,
17-03-17 21:51:22.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:22.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170104571897641. ------
17-03-17 21:51:22.398 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17661 mm
17-03-17 21:51:22.398 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:22.398 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:51:22.398 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:51:22.398 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38580, sync = True, waitForSettling = False)
17-03-17 21:51:22.398 -07 000000476 INF: Z Motor: Moving to -0.176608 mm, started at -0.170105 mm, distance = -6.50 um
17-03-17 21:51:22.408 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:22.408 -07 000000480 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:51:22.418 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:22.418 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:51:22.418 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:22.418 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:22.418 -07 000000475 INF: Y Motor: Moving 1351 steps-29
17-03-17 21:51:22.418 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:22.428 -07 000000476 INF: FPGA: Xmit ZDACW 38580\n [Z Motor]
17-03-17 21:51:22.428 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:51:22.428 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:51:22.438 -07 000000476 INF: FPGA: 'ZDACW 38580' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:51:22.448 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:22.458 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:22.468 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:22.468 -07 000000382 INF: FPGA: Recv ZDACR 38580
17-03-17 21:51:22.478 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:51:22.478 -07 000000476 INF: Z Motor: MoveAbsStepped took 71 ms (did NOT wait for settling yet))
17-03-17 21:51:22.488 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:51:22.488 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:51:22.488 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:22.488 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:51:22.488 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:51:22.488 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:22.488 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:22.498 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:51:22.498 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:51:22.498 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:51:22.658 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:22.658 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 21:51:22.818 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:51:22.818 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 21:51:22.858 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:22.858 -07 000000458 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:51:22.868 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:22.868 -07 000000475 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:22.868 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:51:22.868 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.844 mm, average velocity = 2.074 mm/sec
17-03-17 21:51:23.818 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:23.818 -07 000000459 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:51:23.828 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.828 -07 000000475 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:23.848 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:23.848 -07 000000475 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:23.848 -07 000000475 INF: Y Motor: Moved to 65.7134 after 1451 ms (table move)
17-03-17 21:51:23.858 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176608 mm (DAC = 38580)
17-03-17 21:51:23.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.858 -07 000000424 INF: FPGA: Recv ZSGSRD 36787
17-03-17 21:51:23.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:51:23.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.868 -07 000000512 INF: FPGA: Recv ZSGSRD 36780
17-03-17 21:51:23.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.878 -07 000000480 INF: FPGA: Recv ZSGSRD 36783
17-03-17 21:51:23.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.888 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36782
17-03-17 21:51:23.898 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36785
17-03-17 21:51:23.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.908 -07 000000475 INF: FPGA: Recv ZSGSRD 36781
17-03-17 21:51:23.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.918 -07 000000512 INF: FPGA: Recv ZSGSRD 36776
17-03-17 21:51:23.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.928 -07 000000458 INF: FPGA: Recv ZSGSRD 36776
17-03-17 21:51:23.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.938 -07 000000438 INF: FPGA: Recv ZSGSRD 36786
17-03-17 21:51:23.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:23.948 -07 000000569 INF: FPGA: Recv ZSGSRD 36786
17-03-17 21:51:23.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.958 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:23.958 -07 000000475 INF: FPGA: Recv ZPIEZORD 33193
17-03-17 21:51:23.968 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:23.968 -07 000000429 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.887 V. Piezo Error = -8.0 V.
17-03-17 21:51:23.968 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36782 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36782 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36776 (-175.7 uncal um), Max = 36787 (-175.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:23.968 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36782, posNoise = 5, negNoise = 6
17-03-17 21:51:23.968 -07 000000429 INF: Z Motor: After move to -0.176608, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:23.968 -07 000000429 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-17 21:51:23.968 -07 000000429 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:24.018 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 21:51:24.018 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:24.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:24.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:24.018 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:24.018 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:24.018 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:24.018 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:24.018 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:24.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:24.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:24.028 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:24.038 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:51:24.038 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:51:24.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:24.088 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:24.288 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:24.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:24.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:24.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:24.328 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:24.328 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:24.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 21:51:24.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:51:24.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:24.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:51:24.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:51:24.428 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:24.428 -07 000000547 INF: Autofocus start
17-03-17 21:51:24.428 -07 000000547 INF: MeasureProfile start
17-03-17 21:51:24.428 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:24.438 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:24.438 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:24.448 -07 000000547 INF: MeasureProfile done
17-03-17 21:51:24.448 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:51:24.448 -07 000000547 INF: Autofocus finished
17-03-17 21:51:24.638 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:24.638 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:24.638 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176618723009386. ----------
17-03-17 21:51:24.638 -07 000000610 INF: Cycle	56	Tile	8	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:24.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37077, sync = True, waitForSettling = True)
17-03-17 21:51:24.648 -07 000000610 INF: Z Motor: Moving to -0.169728 mm, started at -0.176619 mm, distance = 6.89 um
17-03-17 21:51:24.648 -07 000000610 INF: FPGA: Xmit ZDACW 37077\n [Z Motor]
17-03-17 21:51:24.648 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:51:24.658 -07 000000610 INF: FPGA: 'ZDACW 37077' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:24.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:24.658 -07 000000012 INF: FPGA: Recv ZDACR 37077
17-03-17 21:51:24.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:24.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.818 -07 000000476 INF: FPGA: Recv ZSGSRD 35710
17-03-17 21:51:24.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:24.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.828 -07 000000512 INF: FPGA: Recv ZSGSRD 35715
17-03-17 21:51:24.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.838 -07 000000458 INF: FPGA: Recv ZSGSRD 35710
17-03-17 21:51:24.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.848 -07 000000626 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:51:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.858 -07 000000459 INF: FPGA: Recv ZSGSRD 35711
17-03-17 21:51:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.868 -07 000000608 INF: FPGA: Recv ZSGSRD 35709
17-03-17 21:51:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.878 -07 000000429 INF: FPGA: Recv ZSGSRD 35717
17-03-17 21:51:24.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35710
17-03-17 21:51:24.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.898 -07 000000382 INF: FPGA: Recv ZSGSRD 35708
17-03-17 21:51:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:24.908 -07 000000475 INF: FPGA: Recv ZSGSRD 35717
17-03-17 21:51:24.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:24.918 -07 000000424 INF: FPGA: Recv ZPIEZORD 31750
17-03-17 21:51:24.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:24.928 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -8.7 V.
17-03-17 21:51:24.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35711 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35710 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35705 (-168.8 uncal um), Max = 35717 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:24.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35711, posNoise = 6, negNoise = 6
17-03-17 21:51:24.928 -07 000000610 INF: Z Motor: After move to -0.169728, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:24.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:51:24.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:24.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:24.928 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:24.928 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:24.928 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:24.928 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:24.928 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:24.928 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:24.928 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:51:24.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:24.928 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:24.928 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:24.938 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:24.938 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:24.938 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:24.938 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:24.948 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:51:24.948 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:51:24.948 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:51:24.948 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:24.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37254 150\n [Camera]
17-03-17 21:51:25.148 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:25.588 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:25.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:25.588 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:25.588 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:25.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:25.598 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:25.598 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:25.598 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:25.598 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:25.598 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:25.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37254 825
17-03-17 21:51:25.928 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:25.968 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:51:25.968 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:51:25.968 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:25.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:51:25.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:51:25.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:25.978 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:25.978 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:51:25.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:25.978 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:51:26.138 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:26.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:26.138 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:26.148 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:26.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:26.148 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:26.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:26.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:51:26.158 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:26.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:51:26.328 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:26.328 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:26.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37254 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-17 21:51:26.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:26.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169738391805561. ------
17-03-17 21:51:26.338 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17627 mm
17-03-17 21:51:26.338 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:26.338 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:26.458 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:51:26.458 -07 000000415 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:51:26.458 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38506, sync = True, waitForSettling = False)
17-03-17 21:51:26.458 -07 000000458 INF: Z Motor: Moving to -0.176269 mm, started at -0.169738 mm, distance = -6.53 um
17-03-17 21:51:26.458 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:26.458 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 115 ms to send, 3 ms to get response, and 119 ms overall
17-03-17 21:51:26.458 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:26.458 -07 000000512 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:51:26.468 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:26.468 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:26.468 -07 000000415 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:26.468 -07 000000415 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:26.468 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:51:26.478 -07 000000458 INF: FPGA: Xmit ZDACW 38506\n [Z Motor]
17-03-17 21:51:26.478 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:51:26.488 -07 000000458 INF: FPGA: 'ZDACW 38506' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:51:26.488 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:26.498 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:26.498 -07 000000012 INF: FPGA: Recv ZDACR 38506
17-03-17 21:51:26.508 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:26.508 -07 000000458 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:51:26.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:51:26.548 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:51:26.548 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:26.548 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:51:26.548 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:51:26.548 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:26.548 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:26.548 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:51:26.548 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:51:26.558 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:51:26.668 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:26.668 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-17 21:51:26.858 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:51:26.858 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:51:26.898 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:26.898 -07 000000431 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:51:26.908 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:26.908 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:26.908 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:51:26.908 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 21:51:26.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:26.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:27.808 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.008536,
17-03-17 21:51:27.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:27.858 -07 000000012 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:51:27.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:27.868 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:27.888 -07 000000415 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:27.888 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:27.888 -07 000000415 INF: Y Motor: Moved to 66.5386 after 1434 ms (table move)
17-03-17 21:51:27.888 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176269 mm (DAC = 38506)
17-03-17 21:51:27.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.898 -07 000000547 INF: FPGA: Recv ZSGSRD 36722
17-03-17 21:51:27.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 21:51:27.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.898 -07 000000576 INF: FPGA: Recv ZSGSRD 36727
17-03-17 21:51:27.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:27.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.908 -07 000000480 INF: FPGA: Recv ZSGSRD 36723
17-03-17 21:51:27.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.918 -07 000000512 INF: FPGA: Recv ZSGSRD 36733
17-03-17 21:51:27.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.928 -07 000000415 INF: FPGA: Recv ZSGSRD 36726
17-03-17 21:51:27.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.938 -07 000000429 INF: FPGA: Recv ZSGSRD 36728
17-03-17 21:51:27.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.948 -07 000000576 INF: FPGA: Recv ZSGSRD 36733
17-03-17 21:51:27.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.958 -07 000000476 INF: FPGA: Recv ZSGSRD 36720
17-03-17 21:51:27.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.968 -07 000000431 INF: FPGA: Recv ZSGSRD 36722
17-03-17 21:51:27.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.978 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:27.978 -07 000000012 INF: FPGA: Recv ZSGSRD 36729
17-03-17 21:51:27.988 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.988 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:27.988 -07 000000480 INF: FPGA: Recv ZPIEZORD 33101
17-03-17 21:51:27.998 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:27.998 -07 000000608 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.0 V.
17-03-17 21:51:27.998 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36726 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36726 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36720 (-175.3 uncal um), Max = 36733 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:27.998 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36726, posNoise = 7, negNoise = 6
17-03-17 21:51:27.998 -07 000000608 INF: Z Motor: After move to -0.176269, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:27.998 -07 000000608 INF: Z Motor: Settle wait time = 1436 ms, measure time = 102 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:51:27.998 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:28.048 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 21:51:28.048 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:28.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:28.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:28.048 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:28.048 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:28.048 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:28.048 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:28.048 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:28.048 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:28.048 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:28.058 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:28.068 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:51:28.068 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:51:28.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:28.118 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:28.318 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:28.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:28.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:28.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:28.358 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:28.358 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:28.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:51:28.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:51:28.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:28.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:28.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:51:28.458 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:28.458 -07 000000480 INF: Autofocus start
17-03-17 21:51:28.458 -07 000000480 INF: MeasureProfile start
17-03-17 21:51:28.458 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:28.468 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:28.468 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:28.468 -07 000000480 INF: MeasureProfile done
17-03-17 21:51:28.468 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:51:28.468 -07 000000480 INF: Autofocus finished
17-03-17 21:51:28.668 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:28.668 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:28.668 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176258967129448. ----------
17-03-17 21:51:28.668 -07 000000610 INF: Cycle	56	Tile	9	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:28.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37003, sync = True, waitForSettling = True)
17-03-17 21:51:28.678 -07 000000610 INF: Z Motor: Moving to -0.169389 mm, started at -0.176259 mm, distance = 6.87 um
17-03-17 21:51:28.678 -07 000000610 INF: FPGA: Xmit ZDACW 37003\n [Z Motor]
17-03-17 21:51:28.678 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:51:28.688 -07 000000610 INF: FPGA: 'ZDACW 37003' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:28.688 -07 000000627 INF: FPGA: Recv ZDACR 37003
17-03-17 21:51:28.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:28.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.848 -07 000000480 INF: FPGA: Recv ZSGSRD 35662
17-03-17 21:51:28.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:28.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.858 -07 000000569 INF: FPGA: Recv ZSGSRD 35657
17-03-17 21:51:28.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.868 -07 000000576 INF: FPGA: Recv ZSGSRD 35661
17-03-17 21:51:28.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.878 -07 000000512 INF: FPGA: Recv ZSGSRD 35657
17-03-17 21:51:28.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35657
17-03-17 21:51:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.898 -07 000000458 INF: FPGA: Recv ZSGSRD 35654
17-03-17 21:51:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35650
17-03-17 21:51:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.918 -07 000000424 INF: FPGA: Recv ZSGSRD 35656
17-03-17 21:51:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35660
17-03-17 21:51:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:28.938 -07 000000431 INF: FPGA: Recv ZSGSRD 35659
17-03-17 21:51:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:28.948 -07 000000480 INF: FPGA: Recv ZPIEZORD 31681
17-03-17 21:51:28.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:28.958 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.8 V.
17-03-17 21:51:28.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35657 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35657 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35650 (-168.5 uncal um), Max = 35662 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:51:28.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35657, posNoise = 5, negNoise = 7
17-03-17 21:51:28.958 -07 000000610 INF: Z Motor: After move to -0.169389, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:28.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:51:28.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:28.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:28.958 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:28.958 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:28.958 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:28.958 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:28.958 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:28.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:28.958 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:51:28.958 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:28.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:28.958 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:28.958 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:51:28.958 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:28.968 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:28.968 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:28.968 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:51:28.968 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:51:28.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:51:28.978 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:28.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37180 150\n [Camera]
17-03-17 21:51:29.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:29.618 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:29.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:29.618 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:29.618 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:29.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:29.618 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:29.618 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:29.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:29.628 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:29.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:29.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37180 825
17-03-17 21:51:29.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:29.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:51:29.998 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:51:29.998 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:29.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:51:29.998 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:51:29.998 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:29.998 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:29.998 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:51:29.998 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:51:30.008 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:51:30.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:30.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:30.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:30.178 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:30.178 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:30.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:51:30.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:30.178 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:30.178 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:30.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) start.
17-03-17 21:51:30.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:30.358 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:30.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37180 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-17 21:51:30.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:30.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169391484349905. ------
17-03-17 21:51:30.368 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:30.368 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17610 mm
17-03-17 21:51:30.368 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:30.368 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38470, sync = True, waitForSettling = False)
17-03-17 21:51:30.368 -07 000000480 INF: Z Motor: Moving to -0.176104 mm, started at -0.169391 mm, distance = -6.71 um
17-03-17 21:51:30.368 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:51:30.368 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:51:30.368 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:30.378 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:30.378 -07 000000480 INF: FPGA: Xmit ZDACW 38470\n [Z Motor]
17-03-17 21:51:30.378 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:51:30.388 -07 000000480 INF: FPGA: 'ZDACW 38470' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:51:30.388 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:30.398 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:30.398 -07 000000475 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:51:30.408 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:51:30.408 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:30.408 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:30.408 -07 000000547 INF: FPGA: Recv ZDACR 38470
17-03-17 21:51:30.408 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:30.408 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:51:30.418 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:30.418 -07 000000480 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:51:30.418 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:30.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:51:30.568 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:51:30.568 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:30.568 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:30.568 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:51:30.568 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:51:30.568 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:30.568 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:30.568 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:51:30.578 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:51:30.588 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:30.588 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:51:30.788 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:51:30.788 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 21:51:30.828 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:30.838 -07 000000608 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:51:30.838 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:30.838 -07 000000438 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:30.838 -07 000000438 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:51:30.838 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.215 mm/sec
17-03-17 21:51:31.788 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:31.788 -07 000000431 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:51:31.798 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.798 -07 000000438 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:31.818 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:31.818 -07 000000438 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:31.818 -07 000000438 INF: Y Motor: Moved to 67.3716 after 1446 ms (table move)
17-03-17 21:51:31.818 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176104 mm (DAC = 38470)
17-03-17 21:51:31.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.828 -07 000000608 INF: FPGA: Recv ZSGSRD 36709
17-03-17 21:51:31.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:51:31.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.828 -07 000000429 INF: FPGA: Recv ZSGSRD 36704
17-03-17 21:51:31.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.838 -07 000000424 INF: FPGA: Recv ZSGSRD 36702
17-03-17 21:51:31.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.848 -07 000000501 INF: FPGA: Recv ZSGSRD 36708
17-03-17 21:51:31.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.858 -07 000000415 INF: FPGA: Recv ZSGSRD 36706
17-03-17 21:51:31.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.868 -07 000000480 INF: FPGA: Recv ZSGSRD 36701
17-03-17 21:51:31.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.878 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.878 -07 000000431 INF: FPGA: Recv ZSGSRD 36697
17-03-17 21:51:31.888 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.888 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.888 -07 000000458 INF: FPGA: Recv ZSGSRD 36696
17-03-17 21:51:31.898 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.898 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.898 -07 000000501 INF: FPGA: Recv ZSGSRD 36704
17-03-17 21:51:31.908 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.908 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:31.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36695
17-03-17 21:51:31.918 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.918 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:31.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:31.918 -07 000000415 INF: FPGA: Recv ZPIEZORD 33120
17-03-17 21:51:31.928 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:31.928 -07 000000626 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -7.9 V.
17-03-17 21:51:31.928 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36702 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36703 (-175.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36695 (-175.2 uncal um), Max = 36709 (-175.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:51:31.928 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36702, posNoise = 7, negNoise = 7
17-03-17 21:51:31.928 -07 000000626 INF: Z Motor: After move to -0.176104, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:31.928 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 105 ms (allowed 150 ms), total time = 1554 ms
17-03-17 21:51:31.928 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:31.978 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:51:31.978 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:31.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:31.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:31.978 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:31.978 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:31.978 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:31.978 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:31.978 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:31.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:31.988 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:31.988 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:31.998 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:51:31.998 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:51:31.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:32.048 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:32.248 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:32.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:32.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:32.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:51:32.288 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:32.288 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:32.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 287 ms overall
17-03-17 21:51:32.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:51:32.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:32.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:32.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:51:32.388 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:32.388 -07 000000458 INF: Autofocus start
17-03-17 21:51:32.388 -07 000000458 INF: MeasureProfile start
17-03-17 21:51:32.388 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:32.398 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:32.398 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:32.398 -07 000000458 INF: MeasureProfile done
17-03-17 21:51:32.398 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:32.398 -07 000000458 INF: Autofocus finished
17-03-17 21:51:32.598 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:32.598 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 21:51:32.598 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176104786038046. ----------
17-03-17 21:51:32.608 -07 000000610 INF: Cycle	56	Tile	10	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:32.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36985, sync = True, waitForSettling = True)
17-03-17 21:51:32.608 -07 000000610 INF: Z Motor: Moving to -0.169306 mm, started at -0.176105 mm, distance = 6.80 um
17-03-17 21:51:32.608 -07 000000610 INF: FPGA: Xmit ZDACW 36985\n [Z Motor]
17-03-17 21:51:32.608 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:51:32.618 -07 000000610 INF: FPGA: 'ZDACW 36985' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:32.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:32.618 -07 000000459 INF: FPGA: Recv ZDACR 36985
17-03-17 21:51:32.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35648
17-03-17 21:51:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.788 -07 000000476 INF: FPGA: Recv ZSGSRD 35647
17-03-17 21:51:32.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.798 -07 000000424 INF: FPGA: Recv ZSGSRD 35639
17-03-17 21:51:32.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.808 -07 000000501 INF: FPGA: Recv ZSGSRD 35643
17-03-17 21:51:32.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35647
17-03-17 21:51:32.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.828 -07 000000012 INF: FPGA: Recv ZSGSRD 35647
17-03-17 21:51:32.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35645
17-03-17 21:51:32.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35648
17-03-17 21:51:32.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:32.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.868 -07 000000512 INF: FPGA: Recv ZSGSRD 35641
17-03-17 21:51:32.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:32.878 -07 000000608 INF: FPGA: Recv ZSGSRD 35649
17-03-17 21:51:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:32.888 -07 000000576 INF: FPGA: Recv ZPIEZORD 31709
17-03-17 21:51:32.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:32.898 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -8.7 V.
17-03-17 21:51:32.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35645 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35647 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35639 (-168.4 uncal um), Max = 35649 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:32.898 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35645, posNoise = 4, negNoise = 6
17-03-17 21:51:32.898 -07 000000610 INF: Z Motor: After move to -0.169306, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:32.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:51:32.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:32.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:32.898 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:32.898 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:32.908 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:32.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:32.908 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:32.908 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:32.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:32.908 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:32.908 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 21:51:32.908 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:32.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:51:32.918 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:32.918 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:51:32.918 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:32.928 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 21:51:32.928 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:51:32.928 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:51:32.928 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 21:51:32.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37161 150\n [Camera]
17-03-17 21:51:33.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:33.168 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.993549,
17-03-17 21:51:33.568 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:33.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:33.568 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:33.568 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:33.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) start.
17-03-17 21:51:33.578 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:33.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:33.578 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:33.578 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:33.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:51:33.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37161 825
17-03-17 21:51:33.918 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:33.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:51:33.948 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:51:33.948 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:33.948 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:51:33.948 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:51:33.948 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:33.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:33.958 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:33.958 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:51:33.968 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:51:34.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:34.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:34.128 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:34.128 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:34.128 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 21:51:34.128 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:34.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:34.128 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:34.128 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:34.128 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:51:34.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:51:34.318 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:34.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37161 150' command took 2 ms to send, 1375 ms to get response, and 1386 ms overall
17-03-17 21:51:34.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:34.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169314393804204. ------
17-03-17 21:51:34.318 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:34.328 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17564 mm
17-03-17 21:51:34.328 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:34.328 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:34.458 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:51:34.458 -07 000000415 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:51:34.458 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38370, sync = True, waitForSettling = False)
17-03-17 21:51:34.458 -07 000000475 INF: Z Motor: Moving to -0.175647 mm, started at -0.169314 mm, distance = -6.33 um
17-03-17 21:51:34.458 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:34.458 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-17 21:51:34.458 -07 000000458 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:51:34.468 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:34.468 -07 000000415 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:34.468 -07 000000415 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:34.468 -07 000000415 INF: Y Motor: Moving 1346 steps-23
17-03-17 21:51:34.468 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:34.478 -07 000000475 INF: FPGA: Xmit ZDACW 38370\n [Z Motor]
17-03-17 21:51:34.478 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:51:34.488 -07 000000475 INF: FPGA: 'ZDACW 38370' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:51:34.488 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:34.498 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:34.498 -07 000000627 INF: FPGA: Recv ZDACR 38370
17-03-17 21:51:34.508 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:34.508 -07 000000475 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:51:34.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:51:34.518 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:51:34.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:34.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:51:34.518 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:51:34.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:34.518 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:34.528 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:51:34.528 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:51:34.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:51:34.668 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:34.668 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 21:51:34.858 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:51:34.858 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:51:34.898 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:34.908 -07 000000459 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:51:34.908 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:34.908 -07 000000415 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:34.908 -07 000000415 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:51:34.908 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec
17-03-17 21:51:35.858 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:35.858 -07 000000501 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:51:35.868 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:35.868 -07 000000415 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:35.888 -07 000000415 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:35.888 -07 000000415 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:35.888 -07 000000415 INF: Y Motor: Moved to 68.2046 after 1432 ms (table move)
17-03-17 21:51:35.888 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175647 mm (DAC = 38370)
17-03-17 21:51:35.888 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.898 -07 000000480 INF: FPGA: Recv ZSGSRD 36630
17-03-17 21:51:35.898 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:51:35.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.898 -07 000000569 INF: FPGA: Recv ZSGSRD 36636
17-03-17 21:51:35.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.908 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.908 -07 000000458 INF: FPGA: Recv ZSGSRD 36626
17-03-17 21:51:35.918 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.918 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.918 -07 000000476 INF: FPGA: Recv ZSGSRD 36632
17-03-17 21:51:35.928 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.928 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.928 -07 000000429 INF: FPGA: Recv ZSGSRD 36630
17-03-17 21:51:35.938 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.938 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.938 -07 000000475 INF: FPGA: Recv ZSGSRD 36634
17-03-17 21:51:35.948 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.948 -07 000000476 INF: FPGA: Recv ZSGSRD 36630
17-03-17 21:51:35.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.958 -07 000000608 INF: FPGA: Recv ZSGSRD 36628
17-03-17 21:51:35.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.968 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.968 -07 000000012 INF: FPGA: Recv ZSGSRD 36629
17-03-17 21:51:35.978 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.978 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:35.978 -07 000000547 INF: FPGA: Recv ZSGSRD 36633
17-03-17 21:51:35.988 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.988 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:35.988 -07 000000475 INF: FPGA: Recv ZPIEZORD 33002
17-03-17 21:51:35.998 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:35.998 -07 000000512 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.0 V.
17-03-17 21:51:35.998 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36631 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36630 (-174.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36626 (-174.7 uncal um), Max = 36636 (-174.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:35.998 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36631, posNoise = 5, negNoise = 5
17-03-17 21:51:35.998 -07 000000512 INF: Z Motor: After move to -0.175647, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:35.998 -07 000000512 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:51:35.998 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:36.048 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 21:51:36.048 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:36.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:36.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:36.048 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:36.048 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:36.048 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:36.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:36.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:36.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:36.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:36.058 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:36.068 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:51:36.068 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:51:36.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:36.118 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:36.318 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:36.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:36.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:36.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:36.358 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:36.358 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:36.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:51:36.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:51:36.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:36.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:36.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:51:36.468 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:36.468 -07 000000512 INF: Autofocus start
17-03-17 21:51:36.468 -07 000000512 INF: MeasureProfile start
17-03-17 21:51:36.468 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:36.478 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.478 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:36.488 -07 000000512 INF: MeasureProfile done
17-03-17 21:51:36.488 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:36.488 -07 000000512 INF: Autofocus finished
17-03-17 21:51:36.678 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:36.678 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:36.678 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175648666975981. ----------
17-03-17 21:51:36.678 -07 000000610 INF: Cycle	56	Tile	11	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:36.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36884, sync = True, waitForSettling = True)
17-03-17 21:51:36.688 -07 000000610 INF: Z Motor: Moving to -0.168844 mm, started at -0.175649 mm, distance = 6.80 um
17-03-17 21:51:36.688 -07 000000610 INF: FPGA: Xmit ZDACW 36884\n [Z Motor]
17-03-17 21:51:36.688 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:51:36.698 -07 000000610 INF: FPGA: 'ZDACW 36884' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:36.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:36.698 -07 000000431 INF: FPGA: Recv ZDACR 36884
17-03-17 21:51:36.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:36.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.858 -07 000000012 INF: FPGA: Recv ZSGSRD 35572
17-03-17 21:51:36.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:36.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.868 -07 000000547 INF: FPGA: Recv ZSGSRD 35572
17-03-17 21:51:36.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.878 -07 000000475 INF: FPGA: Recv ZSGSRD 35581
17-03-17 21:51:36.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.888 -07 000000458 INF: FPGA: Recv ZSGSRD 35567
17-03-17 21:51:36.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.898 -07 000000626 INF: FPGA: Recv ZSGSRD 35571
17-03-17 21:51:36.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.908 -07 000000382 INF: FPGA: Recv ZSGSRD 35572
17-03-17 21:51:36.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.918 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:36.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:36.918 -07 000000626 INF: FPGA: Recv ZSGSRD 35571
17-03-17 21:51:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35577
17-03-17 21:51:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35565
17-03-17 21:51:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:36.948 -07 000000431 INF: FPGA: Recv ZSGSRD 35575
17-03-17 21:51:36.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:36.958 -07 000000458 INF: FPGA: Recv ZPIEZORD 31595
17-03-17 21:51:36.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:36.968 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -8.8 V.
17-03-17 21:51:36.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35572 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35565 (-167.9 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:51:36.968 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35572, posNoise = 9, negNoise = 7
17-03-17 21:51:36.968 -07 000000610 INF: Z Motor: After move to -0.168844, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:36.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:51:36.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:36.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:36.968 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:36.968 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:36.968 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:36.968 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:36.968 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:36.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:36.968 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:36.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:36.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:36.968 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:36.978 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:36.978 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:36.978 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:36.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:36.988 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:51:36.988 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:36.988 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:51:36.988 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:36.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37061 150\n [Camera]
17-03-17 21:51:37.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:37.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:37.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:37.628 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:37.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:37.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:37.628 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:37.638 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:37.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:37.638 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:37.638 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:37.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37061 825
17-03-17 21:51:37.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:38.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:51:38.008 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:51:38.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:38.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:51:38.008 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:51:38.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:38.018 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:51:38.018 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:51:38.018 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:51:38.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:51:38.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:38.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:38.178 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:38.188 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:38.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:38.188 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:38.188 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:38.188 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:51:38.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:38.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:51:38.368 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:51:38.368 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:38.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37061 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-17 21:51:38.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:38.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168845426317856. ------
17-03-17 21:51:38.378 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:38.378 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17545 mm
17-03-17 21:51:38.378 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:38.498 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:38.498 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:51:38.498 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:51:38.498 -07 000000429 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:51:38.498 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38326, sync = True, waitForSettling = False)
17-03-17 21:51:38.498 -07 000000547 INF: Z Motor: Moving to -0.175445 mm, started at -0.168845 mm, distance = -6.60 um
17-03-17 21:51:38.498 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:38.508 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:38.508 -07 000000475 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:51:38.518 -07 000000547 INF: FPGA: Xmit ZDACW 38326\n [Z Motor]
17-03-17 21:51:38.518 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:51:38.518 -07 000000429 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:38.518 -07 000000429 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:38.518 -07 000000429 INF: Y Motor: Moving 1341 steps-16
17-03-17 21:51:38.518 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:51:38.528 -07 000000547 INF: FPGA: 'ZDACW 38326' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:51:38.538 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:38.538 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.019446,
17-03-17 21:51:38.558 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:38.558 -07 000000626 INF: FPGA: Recv ZDACR 38326
17-03-17 21:51:38.568 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:51:38.568 -07 000000547 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-17 21:51:38.568 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:51:38.568 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:51:38.568 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:38.578 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:51:38.578 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:51:38.578 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:38.578 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:38.578 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:38.578 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:51:38.588 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:51:38.698 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:38.698 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 205 ms overall
17-03-17 21:51:38.908 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:51:38.908 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:51:38.948 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:38.948 -07 000000012 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:51:38.958 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:38.958 -07 000000429 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:38.958 -07 000000429 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:51:38.958 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 21:51:39.908 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:39.908 -07 000000458 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:51:39.918 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:39.918 -07 000000429 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:39.938 -07 000000429 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:39.938 -07 000000429 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:51:39.938 -07 000000429 INF: Y Motor: Moved to 69.0269 after 1441 ms (table move)
17-03-17 21:51:39.938 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175445 mm (DAC = 38326)
17-03-17 21:51:39.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.948 -07 000000626 INF: FPGA: Recv ZSGSRD 36605
17-03-17 21:51:39.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:51:39.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.948 -07 000000501 INF: FPGA: Recv ZSGSRD 36601
17-03-17 21:51:39.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:39.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.958 -07 000000608 INF: FPGA: Recv ZSGSRD 36604
17-03-17 21:51:39.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:39.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.968 -07 000000415 INF: FPGA: Recv ZSGSRD 36598
17-03-17 21:51:39.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:39.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36602
17-03-17 21:51:39.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:39.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36600
17-03-17 21:51:39.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:39.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:39.998 -07 000000547 INF: FPGA: Recv ZSGSRD 36600
17-03-17 21:51:40.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.008 -07 000000608 INF: FPGA: Recv ZSGSRD 36593
17-03-17 21:51:40.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.018 -07 000000512 INF: FPGA: Recv ZSGSRD 36599
17-03-17 21:51:40.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.028 -07 000000475 INF: FPGA: Recv ZSGSRD 36605
17-03-17 21:51:40.038 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.038 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:40.038 -07 000000429 INF: FPGA: Recv ZPIEZORD 32952
17-03-17 21:51:40.048 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.048 -07 000000438 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.1 V.
17-03-17 21:51:40.048 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36601 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36600 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36593 (-174.5 uncal um), Max = 36605 (-174.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:51:40.048 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36601, posNoise = 4, negNoise = 8
17-03-17 21:51:40.048 -07 000000438 INF: Z Motor: After move to -0.175445, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:40.048 -07 000000438 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:51:40.048 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:40.098 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 21:51:40.098 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:40.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:40.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:40.098 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:40.098 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:40.098 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:40.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:40.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:40.098 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:40.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:40.108 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:40.118 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:51:40.118 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:51:40.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:40.158 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:40.358 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:40.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:40.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:40.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:40.398 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:40.398 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:40.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:51:40.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:51:40.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:40.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:40.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:51:40.498 -07 000000458 INF: Autofocus start
17-03-17 21:51:40.498 -07 000000458 INF: MeasureProfile start
17-03-17 21:51:40.498 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:40.498 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:40.508 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:40.508 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:40.508 -07 000000458 INF: MeasureProfile done
17-03-17 21:51:40.508 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:40.508 -07 000000458 INF: Autofocus finished
17-03-17 21:51:40.708 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:40.708 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 21:51:40.718 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175455940611728. ----------
17-03-17 21:51:40.718 -07 000000610 INF: Cycle	56	Tile	12	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:40.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36841, sync = True, waitForSettling = True)
17-03-17 21:51:40.718 -07 000000610 INF: Z Motor: Moving to -0.168647 mm, started at -0.175456 mm, distance = 6.81 um
17-03-17 21:51:40.718 -07 000000610 INF: FPGA: Xmit ZDACW 36841\n [Z Motor]
17-03-17 21:51:40.718 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:51:40.728 -07 000000610 INF: FPGA: 'ZDACW 36841' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:51:40.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:40.728 -07 000000475 INF: FPGA: Recv ZDACR 36841
17-03-17 21:51:40.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:40.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.888 -07 000000476 INF: FPGA: Recv ZSGSRD 35546
17-03-17 21:51:40.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:40.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35543
17-03-17 21:51:40.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35544
17-03-17 21:51:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.918 -07 000000424 INF: FPGA: Recv ZSGSRD 35540
17-03-17 21:51:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.928 -07 000000475 INF: FPGA: Recv ZSGSRD 35547
17-03-17 21:51:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.938 -07 000000512 INF: FPGA: Recv ZSGSRD 35539
17-03-17 21:51:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35542
17-03-17 21:51:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.958 -07 000000459 INF: FPGA: Recv ZSGSRD 35547
17-03-17 21:51:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.968 -07 000000476 INF: FPGA: Recv ZSGSRD 35540
17-03-17 21:51:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:40.978 -07 000000475 INF: FPGA: Recv ZSGSRD 35546
17-03-17 21:51:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:40.988 -07 000000576 INF: FPGA: Recv ZPIEZORD 31536
17-03-17 21:51:40.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:40.998 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -8.8 V.
17-03-17 21:51:40.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35544 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35539 (-167.8 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:51:40.998 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 4, negNoise = 4
17-03-17 21:51:40.998 -07 000000610 INF: Z Motor: After move to -0.168647, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:40.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:51:40.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:40.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:40.998 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:40.998 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:40.998 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:40.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:40.998 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:40.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:40.998 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:40.998 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:40.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:40.998 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:41.008 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:41.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:41.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:41.008 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:41.018 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:51:41.018 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:41.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:51:41.018 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:51:41.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 37018 150\n [Camera]
17-03-17 21:51:41.218 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:41.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:41.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:41.658 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:41.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:41.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:41.658 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:41.658 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:41.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:41.668 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:41.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:41.848 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37018 825
17-03-17 21:51:41.918 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:41.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:41.998 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:42.038 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:51:42.038 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:51:42.038 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:42.038 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:51:42.038 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:51:42.038 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:42.038 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:42.038 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:51:42.038 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:42.048 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:51:42.208 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1188
17-03-17 21:51:42.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1188
17-03-17 21:51:42.218 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:42.218 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:42.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1188
17-03-17 21:51:42.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:51:42.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1188
17-03-17 21:51:42.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:42.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:42.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) start.
17-03-17 21:51:42.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:42.408 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:42.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 37018 150' command took 2 ms to send, 1380 ms to get response, and 1387 ms overall
17-03-17 21:51:42.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:42.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168659124165745. ------
17-03-17 21:51:42.408 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:42.408 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17498 mm
17-03-17 21:51:42.408 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:42.408 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:42.408 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:51:42.408 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:51:42.408 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38225, sync = True, waitForSettling = False)
17-03-17 21:51:42.418 -07 000000458 INF: Z Motor: Moving to -0.174983 mm, started at -0.168659 mm, distance = -6.32 um
17-03-17 21:51:42.418 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:42.418 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:42.418 -07 000000576 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:51:42.428 -07 000000458 INF: FPGA: Xmit ZDACW 38225\n [Z Motor]
17-03-17 21:51:42.428 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:42.428 -07 000000627 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:42.428 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:42.428 -07 000000627 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:51:42.428 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:51:42.438 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:42.438 -07 000000458 INF: FPGA: 'ZDACW 38225' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:42.448 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:42.458 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:42.458 -07 000000547 INF: FPGA: Recv ZDACR 38225
17-03-17 21:51:42.468 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:42.468 -07 000000458 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:51:42.608 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:51:42.608 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:51:42.608 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:42.608 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:51:42.608 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:51:42.608 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:42.608 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:42.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:51:42.608 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:42.618 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:51:42.638 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:42.638 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:51:42.818 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:51:42.818 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 21:51:42.858 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:42.858 -07 000000475 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:51:42.868 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:42.868 -07 000000627 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:42.868 -07 000000627 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:51:42.868 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-17 21:51:43.818 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:43.818 -07 000000459 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:51:43.828 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:43.828 -07 000000627 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:43.848 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:43.848 -07 000000627 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:43.848 -07 000000627 INF: Y Motor: Moved to 69.8623 after 1435 ms (table move)
17-03-17 21:51:43.848 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174983 mm (DAC = 38225)
17-03-17 21:51:43.848 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.858 -07 000000576 INF: FPGA: Recv ZSGSRD 36540
17-03-17 21:51:43.858 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:51:43.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.858 -07 000000480 INF: FPGA: Recv ZSGSRD 36540
17-03-17 21:51:43.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:43.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.868 -07 000000459 INF: FPGA: Recv ZSGSRD 36527
17-03-17 21:51:43.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:43.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.878 -07 000000429 INF: FPGA: Recv ZSGSRD 36536
17-03-17 21:51:43.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:43.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.888 -07 000000458 INF: FPGA: Recv ZSGSRD 36528
17-03-17 21:51:43.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:43.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.898 -07 000000431 INF: FPGA: Recv ZSGSRD 36531
17-03-17 21:51:43.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:43.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.928 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.008536,
17-03-17 21:51:43.928 -07 000000429 INF: FPGA: Recv ZSGSRD 36530
17-03-17 21:51:43.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:51:43.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.938 -07 000000475 INF: FPGA: Recv ZSGSRD 36530
17-03-17 21:51:43.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:43.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.958 -07 000000415 INF: FPGA: Recv ZSGSRD 36535
17-03-17 21:51:43.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:43.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:43.968 -07 000000480 INF: FPGA: Recv ZSGSRD 36533
17-03-17 21:51:43.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:43.988 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:43.988 -07 000000627 INF: FPGA: Recv ZPIEZORD 32864
17-03-17 21:51:43.998 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:51:43.998 -07 000000608 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -8.1 V.
17-03-17 21:51:43.998 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36533 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36532 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36527 (-174.1 uncal um), Max = 36540 (-174.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:43.998 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36533, posNoise = 7, negNoise = 6
17-03-17 21:51:43.998 -07 000000608 INF: Z Motor: After move to -0.174983, error = -0.000036, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:43.998 -07 000000608 INF: Z Motor: Settle wait time = 1438 ms, measure time = 142 ms (allowed 150 ms), total time = 1580 ms
17-03-17 21:51:43.998 -07 000000608 INF: Z Motor: Waiting extra 8 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:44.008 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:51:44.008 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:44.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:44.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:44.008 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:44.008 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:44.008 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:44.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:44.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:51:44.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:44.018 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:44.018 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:44.028 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:51:44.028 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:51:44.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:44.068 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:44.268 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:44.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:44.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:44.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:51:44.308 -07 000000608 INF: FPGA: Recv @CAMSNAP 282
17-03-17 21:51:44.318 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:44.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 21:51:44.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 21:51:44.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:44.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:51:44.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:51:44.418 -07 000000547 INF: Autofocus start
17-03-17 21:51:44.418 -07 000000547 INF: MeasureProfile start
17-03-17 21:51:44.418 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:44.418 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:44.428 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:44.428 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:44.428 -07 000000547 INF: MeasureProfile done
17-03-17 21:51:44.428 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:51:44.428 -07 000000547 INF: Autofocus finished
17-03-17 21:51:44.628 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:44.628 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:44.628 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.175019094186088. ----------
17-03-17 21:51:44.628 -07 000000610 INF: Cycle	56	Tile	13	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:44.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36740, sync = True, waitForSettling = True)
17-03-17 21:51:44.638 -07 000000610 INF: Z Motor: Moving to -0.168185 mm, started at -0.175019 mm, distance = 6.83 um
17-03-17 21:51:44.638 -07 000000610 INF: FPGA: Xmit ZDACW 36740\n [Z Motor]
17-03-17 21:51:44.638 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:51:44.648 -07 000000610 INF: FPGA: 'ZDACW 36740' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:44.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:44.648 -07 000000438 INF: FPGA: Recv ZDACR 36740
17-03-17 21:51:44.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:44.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.808 -07 000000431 INF: FPGA: Recv ZSGSRD 35475
17-03-17 21:51:44.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.818 -07 000000012 INF: FPGA: Recv ZSGSRD 35471
17-03-17 21:51:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.828 -07 000000475 INF: FPGA: Recv ZSGSRD 35471
17-03-17 21:51:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35466
17-03-17 21:51:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35474
17-03-17 21:51:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.858 -07 000000415 INF: FPGA: Recv ZSGSRD 35471
17-03-17 21:51:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.868 -07 000000480 INF: FPGA: Recv ZSGSRD 35467
17-03-17 21:51:44.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.878 -07 000000501 INF: FPGA: Recv ZSGSRD 35475
17-03-17 21:51:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.888 -07 000000512 INF: FPGA: Recv ZSGSRD 35471
17-03-17 21:51:44.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:44.898 -07 000000547 INF: FPGA: Recv ZSGSRD 35474
17-03-17 21:51:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:44.908 -07 000000431 INF: FPGA: Recv ZPIEZORD 31455
17-03-17 21:51:44.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:44.918 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -8.9 V.
17-03-17 21:51:44.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35472 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35471 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35466 (-167.3 uncal um), Max = 35475 (-167.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:51:44.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35472, posNoise = 3, negNoise = 6
17-03-17 21:51:44.918 -07 000000610 INF: Z Motor: After move to -0.168185, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:44.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:51:44.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:44.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:44.918 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:44.918 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:44.918 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:44.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:44.918 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:44.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:44.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:51:44.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:44.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:51:44.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:44.928 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:51:44.928 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:44.928 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:44.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:44.928 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:51:44.928 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:51:44.938 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:51:44.938 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:44.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36916 150\n [Camera]
17-03-17 21:51:45.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:45.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:45.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:45.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:45.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:45.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) start.
17-03-17 21:51:45.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:45.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:45.578 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:45.578 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:45.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:51:45.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36916 825
17-03-17 21:51:45.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:45.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:51:45.958 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:51:45.958 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:45.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:51:45.958 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:51:45.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:45.958 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:45.958 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:45.958 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:51:45.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:51:46.128 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:46.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:46.128 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:46.128 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:46.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 21:51:46.128 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:46.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:46.138 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:46.138 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:46.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:51:46.318 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:46.318 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:46.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36916 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-17 21:51:46.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:46.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.16820300510368. ------
17-03-17 21:51:46.328 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:46.328 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17463 mm
17-03-17 21:51:46.328 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:46.448 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:46.448 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 21:51:46.448 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:46.448 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:51:46.448 -07 000000012 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-17 21:51:46.448 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38148, sync = True, waitForSettling = False)
17-03-17 21:51:46.448 -07 000000608 INF: Z Motor: Moving to -0.174630 mm, started at -0.168203 mm, distance = -6.43 um
17-03-17 21:51:46.458 -07 000000608 INF: FPGA: Xmit ZDACW 38148\n [Z Motor]
17-03-17 21:51:46.458 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:51:46.468 -07 000000608 INF: FPGA: 'ZDACW 38148' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:46.468 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:46.468 -07 000000501 INF: FPGA: Recv ZDACR 38148
17-03-17 21:51:46.478 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:46.478 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:46.478 -07 000000608 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:51:46.478 -07 000000626 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:51:46.488 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:51:46.488 -07 000000012 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:46.488 -07 000000012 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:46.488 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:51:46.488 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:46.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:51:46.528 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:51:46.528 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:46.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:51:46.528 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:51:46.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:46.528 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:46.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:51:46.528 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:51:46.538 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:51:46.648 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:46.648 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 21:51:46.858 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:51:46.858 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:51:46.898 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:46.908 -07 000000576 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:51:46.908 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:51:46.908 -07 000000012 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:46.908 -07 000000012 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:51:46.908 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.840 mm, average velocity = 2.223 mm/sec
17-03-17 21:51:46.918 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:46.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:47.858 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:47.858 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:51:47.868 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.868 -07 000000012 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:47.888 -07 000000012 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:47.888 -07 000000012 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:47.888 -07 000000012 INF: Y Motor: Moved to 70.6880 after 1434 ms (table move)
17-03-17 21:51:47.888 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174630 mm (DAC = 38148)
17-03-17 21:51:47.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.898 -07 000000627 INF: FPGA: Recv ZSGSRD 36472
17-03-17 21:51:47.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:51:47.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36466
17-03-17 21:51:47.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:47.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.908 -07 000000547 INF: FPGA: Recv ZSGSRD 36474
17-03-17 21:51:47.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.918 -07 000000431 INF: FPGA: Recv ZSGSRD 36481
17-03-17 21:51:47.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.928 -07 000000438 INF: FPGA: Recv ZSGSRD 36462
17-03-17 21:51:47.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.938 -07 000000480 INF: FPGA: Recv ZSGSRD 36472
17-03-17 21:51:47.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.948 -07 000000429 INF: FPGA: Recv ZSGSRD 36476
17-03-17 21:51:47.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.958 -07 000000547 INF: FPGA: Recv ZSGSRD 36469
17-03-17 21:51:47.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.968 -07 000000501 INF: FPGA: Recv ZSGSRD 36470
17-03-17 21:51:47.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:47.978 -07 000000438 INF: FPGA: Recv ZSGSRD 36469
17-03-17 21:51:47.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.988 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:47.988 -07 000000480 INF: FPGA: Recv ZPIEZORD 32781
17-03-17 21:51:47.998 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:47.998 -07 000000382 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.2 V.
17-03-17 21:51:47.998 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36471 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36471 (-173.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36462 (-173.7 uncal um), Max = 36481 (-173.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:51:47.998 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36471, posNoise = 10, negNoise = 9
17-03-17 21:51:47.998 -07 000000382 INF: Z Motor: After move to -0.174630, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:47.998 -07 000000382 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:51:47.998 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:48.048 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 21:51:48.048 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:48.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:48.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:48.048 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:48.048 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:48.048 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:48.048 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:48.048 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:48.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:48.058 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:51:48.058 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:48.068 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:51:48.068 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:51:48.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:48.118 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:48.318 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:48.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:48.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:48.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:48.358 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:48.358 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:48.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 21:51:48.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:51:48.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:48.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:48.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:51:48.458 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:48.458 -07 000000627 INF: Autofocus start
17-03-17 21:51:48.458 -07 000000627 INF: MeasureProfile start
17-03-17 21:51:48.458 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:48.468 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:48.468 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:48.468 -07 000000627 INF: MeasureProfile done
17-03-17 21:51:48.468 -07 000000627 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:51:48.468 -07 000000627 INF: Autofocus finished
17-03-17 21:51:48.668 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:48.668 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:48.678 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174620793033299. ----------
17-03-17 21:51:48.678 -07 000000610 INF: Cycle	56	Tile	14	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:48.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36698, sync = True, waitForSettling = True)
17-03-17 21:51:48.678 -07 000000610 INF: Z Motor: Moving to -0.167993 mm, started at -0.174621 mm, distance = 6.63 um
17-03-17 21:51:48.678 -07 000000610 INF: FPGA: Xmit ZDACW 36698\n [Z Motor]
17-03-17 21:51:48.678 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:51:48.688 -07 000000610 INF: FPGA: 'ZDACW 36698' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:48.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:48.688 -07 000000512 INF: FPGA: Recv ZDACR 36698
17-03-17 21:51:48.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.848 -07 000000501 INF: FPGA: Recv ZSGSRD 35439
17-03-17 21:51:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.858 -07 000000382 INF: FPGA: Recv ZSGSRD 35443
17-03-17 21:51:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.868 -07 000000626 INF: FPGA: Recv ZSGSRD 35439
17-03-17 21:51:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.878 -07 000000476 INF: FPGA: Recv ZSGSRD 35445
17-03-17 21:51:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.888 -07 000000569 INF: FPGA: Recv ZSGSRD 35442
17-03-17 21:51:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.898 -07 000000459 INF: FPGA: Recv ZSGSRD 35439
17-03-17 21:51:48.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.908 -07 000000458 INF: FPGA: Recv ZSGSRD 35445
17-03-17 21:51:48.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35444
17-03-17 21:51:48.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.928 -07 000000608 INF: FPGA: Recv ZSGSRD 35431
17-03-17 21:51:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:48.938 -07 000000512 INF: FPGA: Recv ZSGSRD 35443
17-03-17 21:51:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:48.948 -07 000000501 INF: FPGA: Recv ZPIEZORD 31434
17-03-17 21:51:48.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:48.958 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -8.8 V.
17-03-17 21:51:48.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35441 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35431 (-167.1 uncal um), Max = 35445 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:51:48.958 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35441, posNoise = 4, negNoise = 10
17-03-17 21:51:48.958 -07 000000610 INF: Z Motor: After move to -0.167993, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:48.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:51:48.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:48.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:48.958 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:48.958 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:48.958 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:48.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:48.958 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:48.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:48.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:48.958 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:48.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:48.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:48.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:48.968 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:48.968 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:48.968 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:48.978 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:51:48.978 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:51:48.978 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:51:48.978 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:51:48.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36875 150\n [Camera]
17-03-17 21:51:49.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:49.338 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.001704,
17-03-17 21:51:49.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:49.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:49.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:49.618 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:49.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:49.618 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:49.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:49.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:49.628 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:49.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:49.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36875 825
17-03-17 21:51:49.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:49.998 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:51:50.008 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:51:50.008 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:50.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:51:50.008 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:51:50.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:50.008 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:50.008 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:51:50.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:50.018 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:51:50.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:50.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:50.178 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:50.178 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:50.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:50.178 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:50.178 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:50.178 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:51:50.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:50.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:51:50.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:51:50.368 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:50.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36875 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-17 21:51:50.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:50.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168003854527285. ------
17-03-17 21:51:50.488 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:50.488 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17434 mm
17-03-17 21:51:50.488 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:50.488 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:51:50.488 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:51:50.488 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:50.488 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38085, sync = True, waitForSettling = False)
17-03-17 21:51:50.488 -07 000000569 INF: Z Motor: Moving to -0.174342 mm, started at -0.168004 mm, distance = -6.34 um
17-03-17 21:51:50.498 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:51:50.498 -07 000000569 INF: FPGA: Xmit ZDACW 38085\n [Z Motor]
17-03-17 21:51:50.498 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:51:50.508 -07 000000569 INF: FPGA: 'ZDACW 38085' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:51:50.508 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:50.508 -07 000000431 INF: FPGA: Recv ZDACR 38085
17-03-17 21:51:50.518 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:50.518 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:50.518 -07 000000569 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:51:50.518 -07 000000476 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:51:50.528 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:50.528 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:51:50.528 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:50.528 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:50.528 -07 000000415 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:51:50.538 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:50.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:51:50.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:51:50.558 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:50.558 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:50.568 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:51:50.568 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:51:50.568 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:50.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:51:50.568 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:50.568 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:51:50.728 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:50.728 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 21:51:50.918 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:51:50.918 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 21:51:50.948 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:50.958 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:51:50.958 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:51:50.958 -07 000000415 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:50.958 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:51:50.958 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.845 mm, average velocity = 2.166 mm/sec
17-03-17 21:51:51.908 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:51.908 -07 000000480 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:51:51.918 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:51.918 -07 000000415 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:51.918 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:51.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:51.938 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:51.938 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:51.938 -07 000000415 INF: Y Motor: Moved to 71.5186 after 1447 ms (table move)
17-03-17 21:51:51.938 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174342 mm (DAC = 38085)
17-03-17 21:51:51.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.948 -07 000000569 INF: FPGA: Recv ZSGSRD 36441
17-03-17 21:51:51.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:51:51.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.948 -07 000000476 INF: FPGA: Recv ZSGSRD 36426
17-03-17 21:51:51.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:51.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.958 -07 000000576 INF: FPGA: Recv ZSGSRD 36428
17-03-17 21:51:51.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:51.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.968 -07 000000480 INF: FPGA: Recv ZSGSRD 36430
17-03-17 21:51:51.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:51.978 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.978 -07 000000429 INF: FPGA: Recv ZSGSRD 36434
17-03-17 21:51:51.988 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:51.988 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.988 -07 000000569 INF: FPGA: Recv ZSGSRD 36433
17-03-17 21:51:51.998 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:51.998 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:51.998 -07 000000458 INF: FPGA: Recv ZSGSRD 36426
17-03-17 21:51:52.008 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.008 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.008 -07 000000576 INF: FPGA: Recv ZSGSRD 36420
17-03-17 21:51:52.018 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.018 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.018 -07 000000431 INF: FPGA: Recv ZSGSRD 36425
17-03-17 21:51:52.028 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.028 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.028 -07 000000429 INF: FPGA: Recv ZSGSRD 36430
17-03-17 21:51:52.038 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.038 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:52.038 -07 000000569 INF: FPGA: Recv ZPIEZORD 32758
17-03-17 21:51:52.048 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.048 -07 000000608 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.1 V.
17-03-17 21:51:52.048 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36429 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36429 (-173.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36420 (-173.4 uncal um), Max = 36441 (-173.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:51:52.048 -07 000000608 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36429, posNoise = 12, negNoise = 9
17-03-17 21:51:52.048 -07 000000608 INF: Z Motor: After move to -0.174342, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:52.048 -07 000000608 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:51:52.048 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:52.098 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:51:52.098 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:52.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:52.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:52.098 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:52.098 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:52.098 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:52.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:52.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:52.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:52.108 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:52.108 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:52.118 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:51:52.118 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:51:52.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:52.158 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:52.358 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:52.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:52.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:52.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:51:52.408 -07 000000431 INF: FPGA: Recv @CAMSNAP 283
17-03-17 21:51:52.408 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:52.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 21:51:52.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:51:52.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:52.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:51:52.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:51:52.508 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:52.508 -07 000000626 INF: Autofocus start
17-03-17 21:51:52.508 -07 000000626 INF: MeasureProfile start
17-03-17 21:51:52.508 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:52.518 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:51:52.518 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:52.518 -07 000000626 INF: MeasureProfile done
17-03-17 21:51:52.518 -07 000000626 INF: X=64  Z correction [um]=0.2557664
17-03-17 21:51:52.518 -07 000000626 INF: Autofocus finished
17-03-17 21:51:52.718 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:52.718 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:52.718 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174350976123345. ----------
17-03-17 21:51:52.718 -07 000000610 INF: Cycle	56	Tile	15	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:52.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36653, sync = True, waitForSettling = True)
17-03-17 21:51:52.728 -07 000000610 INF: Z Motor: Moving to -0.167787 mm, started at -0.174351 mm, distance = 6.56 um
17-03-17 21:51:52.728 -07 000000610 INF: FPGA: Xmit ZDACW 36653\n [Z Motor]
17-03-17 21:51:52.728 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:51:52.738 -07 000000610 INF: FPGA: 'ZDACW 36653' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:52.738 -07 000000458 INF: FPGA: Recv ZDACR 36653
17-03-17 21:51:52.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:52.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.898 -07 000000512 INF: FPGA: Recv ZSGSRD 35407
17-03-17 21:51:52.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.908 -07 000000569 INF: FPGA: Recv ZSGSRD 35406
17-03-17 21:51:52.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35414
17-03-17 21:51:52.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.928 -07 000000626 INF: FPGA: Recv ZSGSRD 35403
17-03-17 21:51:52.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.938 -07 000000459 INF: FPGA: Recv ZSGSRD 35407
17-03-17 21:51:52.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.948 -07 000000512 INF: FPGA: Recv ZSGSRD 35408
17-03-17 21:51:52.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.958 -07 000000480 INF: FPGA: Recv ZSGSRD 35406
17-03-17 21:51:52.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.968 -07 000000569 INF: FPGA: Recv ZSGSRD 35414
17-03-17 21:51:52.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.978 -07 000000459 INF: FPGA: Recv ZSGSRD 35405
17-03-17 21:51:52.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:52.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35410
17-03-17 21:51:52.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:52.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:52.998 -07 000000627 INF: FPGA: Recv ZPIEZORD 31379
17-03-17 21:51:53.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:53.008 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -8.9 V.
17-03-17 21:51:53.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35408 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35407 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35403 (-166.9 uncal um), Max = 35414 (-167.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:53.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35408, posNoise = 6, negNoise = 5
17-03-17 21:51:53.008 -07 000000610 INF: Z Motor: After move to -0.167787, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:53.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:51:53.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:53.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:53.008 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:53.008 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:53.008 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:53.008 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:53.008 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:53.008 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:53.008 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:51:53.008 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:53.008 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:51:53.008 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:53.008 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:51:53.008 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:53.018 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:51:53.018 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:53.018 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:51:53.018 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:51:53.018 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:51:53.018 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:51:53.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36830 150\n [Camera]
17-03-17 21:51:53.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:53.668 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:53.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:53.668 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:53.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:53.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:53.668 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:53.668 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:53.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:51:53.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:53.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:51:53.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36830 825
17-03-17 21:51:54.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:54.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:51:54.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:51:54.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:54.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:51:54.048 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:51:54.048 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:54.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:51:54.058 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:51:54.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:51:54.058 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:51:54.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:54.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:54.218 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:54.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:54.228 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:54.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:51:54.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:54.228 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:54.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:54.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) start.
17-03-17 21:51:54.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:54.418 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:54.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36830 150' command took 2 ms to send, 1381 ms to get response, and 1389 ms overall
17-03-17 21:51:54.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:54.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167791855526607. ------
17-03-17 21:51:54.418 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:54.418 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17404 mm
17-03-17 21:51:54.418 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:54.428 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:54.428 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:54.428 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:54.428 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38019, sync = True, waitForSettling = False)
17-03-17 21:51:54.428 -07 000000438 INF: Z Motor: Moving to -0.174040 mm, started at -0.167792 mm, distance = -6.25 um
17-03-17 21:51:54.428 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:51:54.428 -07 000000012 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:51:54.438 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:54.438 -07 000000429 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:51:54.448 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:51:54.448 -07 000000012 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:54.448 -07 000000012 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:54.448 -07 000000012 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:51:54.448 -07 000000438 INF: FPGA: Xmit ZDACW 38019\n [Z Motor]
17-03-17 21:51:54.448 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:51:54.458 -07 000000438 INF: FPGA: 'ZDACW 38019' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:51:54.458 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:54.458 -07 000000608 INF: FPGA: Recv ZDACR 38019
17-03-17 21:51:54.468 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:54.468 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:54.468 -07 000000438 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:51:54.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:51:54.618 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:51:54.618 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:54.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:51:54.618 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:51:54.618 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:54.618 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:54.618 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:54.618 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:51:54.628 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:54.628 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:51:54.628 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:51:54.698 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.990831,
17-03-17 21:51:54.838 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:51:54.838 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:51:54.878 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:54.888 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:51:54.888 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:51:54.888 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:54.888 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:51:54.888 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 21:51:55.838 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:55.838 -07 000000382 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:51:55.848 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.848 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:55.868 -07 000000012 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:55.868 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:55.868 -07 000000012 INF: Y Motor: Moved to 72.3491 after 1443 ms (table move)
17-03-17 21:51:55.868 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174040 mm (DAC = 38019)
17-03-17 21:51:55.868 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.878 -07 000000438 INF: FPGA: Recv ZSGSRD 36385
17-03-17 21:51:55.878 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:51:55.878 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.878 -07 000000476 INF: FPGA: Recv ZSGSRD 36380
17-03-17 21:51:55.888 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:55.888 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.888 -07 000000547 INF: FPGA: Recv ZSGSRD 36382
17-03-17 21:51:55.898 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.898 -07 000000431 INF: FPGA: Recv ZSGSRD 36382
17-03-17 21:51:55.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.908 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.908 -07 000000501 INF: FPGA: Recv ZSGSRD 36381
17-03-17 21:51:55.918 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.918 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.918 -07 000000458 INF: FPGA: Recv ZSGSRD 36380
17-03-17 21:51:55.928 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.928 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.928 -07 000000459 INF: FPGA: Recv ZSGSRD 36378
17-03-17 21:51:55.938 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.938 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.938 -07 000000626 INF: FPGA: Recv ZSGSRD 36384
17-03-17 21:51:55.948 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.948 -07 000000431 INF: FPGA: Recv ZSGSRD 36379
17-03-17 21:51:55.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:55.958 -07 000000459 INF: FPGA: Recv ZSGSRD 36379
17-03-17 21:51:55.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.968 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:55.968 -07 000000480 INF: FPGA: Recv ZPIEZORD 32718
17-03-17 21:51:55.978 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:55.978 -07 000000512 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.801 V. Piezo Error = -8.1 V.
17-03-17 21:51:55.978 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36381 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36380 (-173.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36378 (-173.1 uncal um), Max = 36385 (-173.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:51:55.978 -07 000000512 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36381, posNoise = 4, negNoise = 3
17-03-17 21:51:55.978 -07 000000512 INF: Z Motor: After move to -0.174040, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:55.978 -07 000000512 INF: Z Motor: Settle wait time = 1447 ms, measure time = 101 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:51:55.978 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:51:56.028 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:51:56.028 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:51:56.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:56.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:56.028 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:56.028 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:56.028 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:51:56.028 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:56.028 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:51:56.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:51:56.038 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:56.038 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:51:56.038 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:51:56.038 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:51:56.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:51:56.088 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:51:56.288 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:51:56.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:51:56.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:51:56.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:51:56.328 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:51:56.328 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:51:56.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:51:56.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:51:56.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:56.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:51:56.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:51:56.428 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:56.428 -07 000000438 INF: Autofocus start
17-03-17 21:51:56.428 -07 000000438 INF: MeasureProfile start
17-03-17 21:51:56.428 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:56.438 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:51:56.438 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:51:56.438 -07 000000438 INF: MeasureProfile done
17-03-17 21:51:56.438 -07 000000438 INF: X=80  Z correction [um]=0.337546
17-03-17 21:51:56.438 -07 000000438 INF: Autofocus finished
17-03-17 21:51:56.638 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:51:56.638 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:51:56.638 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.17404261394054. ----------
17-03-17 21:51:56.638 -07 000000610 INF: Cycle	56	Tile	16	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:51:56.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36605, sync = True, waitForSettling = True)
17-03-17 21:51:56.648 -07 000000610 INF: Z Motor: Moving to -0.167567 mm, started at -0.174043 mm, distance = 6.48 um
17-03-17 21:51:56.648 -07 000000610 INF: FPGA: Xmit ZDACW 36605\n [Z Motor]
17-03-17 21:51:56.648 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:51:56.658 -07 000000610 INF: FPGA: 'ZDACW 36605' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:51:56.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:56.658 -07 000000475 INF: FPGA: Recv ZDACR 36605
17-03-17 21:51:56.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:51:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.818 -07 000000012 INF: FPGA: Recv ZSGSRD 35378
17-03-17 21:51:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.828 -07 000000627 INF: FPGA: Recv ZSGSRD 35380
17-03-17 21:51:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.838 -07 000000475 INF: FPGA: Recv ZSGSRD 35376
17-03-17 21:51:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.848 -07 000000458 INF: FPGA: Recv ZSGSRD 35374
17-03-17 21:51:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.858 -07 000000429 INF: FPGA: Recv ZSGSRD 35375
17-03-17 21:51:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.868 -07 000000012 INF: FPGA: Recv ZSGSRD 35375
17-03-17 21:51:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.878 -07 000000480 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:51:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.888 -07 000000012 INF: FPGA: Recv ZSGSRD 35373
17-03-17 21:51:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.898 -07 000000626 INF: FPGA: Recv ZSGSRD 35371
17-03-17 21:51:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:56.908 -07 000000547 INF: FPGA: Recv ZSGSRD 35373
17-03-17 21:51:56.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:56.918 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:51:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:51:56.918 -07 000000458 INF: FPGA: Recv ZPIEZORD 31379
17-03-17 21:51:56.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:56.928 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -8.8 V.
17-03-17 21:51:56.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35376 (-166.7 uncal um), Error = 0.8 uncal um, Median = 35375 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35371 (-166.7 uncal um), Max = 35382 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:51:56.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35376, posNoise = 6, negNoise = 5
17-03-17 21:51:56.928 -07 000000610 INF: Z Motor: After move to -0.167567, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:51:56.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:51:56.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:51:56.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:51:56.928 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:51:56.928 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:51:56.928 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:51:56.928 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:51:56.928 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:51:56.928 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:51:56.928 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:51:56.928 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:51:56.928 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:51:56.928 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:51:56.938 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:51:56.938 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:51:56.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:51:56.938 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:51:56.948 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:51:56.948 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:51:56.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:51:56.948 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:51:56.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36782 150\n [Camera]
17-03-17 21:51:57.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:51:57.588 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:51:57.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:51:57.588 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:57.588 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:57.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) start.
17-03-17 21:51:57.588 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:51:57.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:51:57.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:57.588 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:57.588 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:51:57.778 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36782 825
17-03-17 21:51:57.928 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:51:57.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:51:57.988 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:51:57.988 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:57.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:51:57.988 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:51:57.988 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:57.988 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:57.988 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:51:57.988 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:51:57.998 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:51:58.148 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:51:58.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:51:58.148 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:51:58.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:51:58.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 21:51:58.148 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:51:58.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:51:58.148 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:51:58.148 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:51:58.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:51:58.338 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:51:58.338 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:51:58.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36782 150' command took 2 ms to send, 1382 ms to get response, and 1387 ms overall
17-03-17 21:51:58.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:51:58.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167586280738071. ------
17-03-17 21:51:58.338 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:51:58.338 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17407 mm
17-03-17 21:51:58.338 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:51:58.338 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:51:58.338 -07 000000012 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:51:58.338 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38025, sync = True, waitForSettling = False)
17-03-17 21:51:58.338 -07 000000627 INF: Z Motor: Moving to -0.174067 mm, started at -0.167586 mm, distance = -6.48 um
17-03-17 21:51:58.348 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:51:58.348 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:51:58.348 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:58.348 -07 000000431 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:51:58.358 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:51:58.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:58.358 -07 000000012 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:58.358 -07 000000012 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:51:58.358 -07 000000012 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:51:58.368 -07 000000627 INF: FPGA: Xmit ZDACW 38025\n [Z Motor]
17-03-17 21:51:58.368 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:51:58.378 -07 000000627 INF: FPGA: 'ZDACW 38025' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:51:58.488 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:51:58.498 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:51:58.498 -07 000000608 INF: FPGA: Recv ZDACR 38025
17-03-17 21:51:58.508 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:51:58.508 -07 000000627 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-17 21:51:58.538 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:51:58.538 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:51:58.538 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:58.538 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:51:58.538 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:51:58.538 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:51:58.548 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:51:58.548 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:51:58.548 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:51:58.548 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:51:58.558 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:51:58.558 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:51:58.868 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:51:58.868 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 116 ms to send, 375 ms to get response, and 514 ms overall
17-03-17 21:51:58.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:58.908 -07 000000576 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:51:58.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:58.918 -07 000000012 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:58.918 -07 000000012 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 21:51:58.918 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 514 ms, distance = 0.843 mm, average velocity = 1.641 mm/sec
17-03-17 21:51:59.868 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:51:59.868 -07 000000547 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:51:59.878 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:51:59.878 -07 000000012 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:51:59.898 -07 000000012 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:51:59.898 -07 000000012 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:51:59.898 -07 000000012 INF: Y Motor: Moved to 73.1758 after 1555 ms (table move)
17-03-17 21:51:59.898 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174067 mm (DAC = 38025)
17-03-17 21:51:59.898 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.908 -07 000000459 INF: FPGA: Recv ZSGSRD 36392
17-03-17 21:51:59.908 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:51:59.908 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.908 -07 000000547 INF: FPGA: Recv ZSGSRD 36388
17-03-17 21:51:59.918 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:51:59.918 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.918 -07 000000608 INF: FPGA: Recv ZSGSRD 36394
17-03-17 21:51:59.928 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.928 -07 000000627 INF: FPGA: Recv ZSGSRD 36380
17-03-17 21:51:59.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.938 -07 000000424 INF: FPGA: Recv ZSGSRD 36380
17-03-17 21:51:59.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.948 -07 000000475 INF: FPGA: Recv ZSGSRD 36383
17-03-17 21:51:59.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.958 -07 000000476 INF: FPGA: Recv ZSGSRD 36380
17-03-17 21:51:59.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.968 -07 000000626 INF: FPGA: Recv ZSGSRD 36382
17-03-17 21:51:59.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36391
17-03-17 21:51:59.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:51:59.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36391
17-03-17 21:51:59.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:51:59.998 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:51:59.998 -07 000000429 INF: FPGA: Recv ZPIEZORD 32724
17-03-17 21:52:00.008 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:00.008 -07 000000438 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.1 V.
17-03-17 21:52:00.008 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36386 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36386 (-173.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36380 (-173.2 uncal um), Max = 36394 (-173.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:00.008 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36386, posNoise = 8, negNoise = 6
17-03-17 21:52:00.008 -07 000000438 INF: Z Motor: After move to -0.174067, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:00.008 -07 000000438 INF: Z Motor: Settle wait time = 1558 ms, measure time = 102 ms (allowed 150 ms), total time = 1660 ms
17-03-17 21:52:00.008 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:00.058 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 21:52:00.058 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:00.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:00.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:00.058 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:00.058 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:00.058 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:00.058 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:00.058 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:00.058 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:00.058 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:00.058 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:00.068 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 21:52:00.068 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:52:00.078 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.993549,
17-03-17 21:52:00.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:00.138 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:00.338 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:00.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:00.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:00.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:52:00.378 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:00.378 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:00.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 304 ms overall
17-03-17 21:52:00.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:52:00.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:00.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:00.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:52:00.478 -07 000000547 INF: Autofocus start
17-03-17 21:52:00.478 -07 000000547 INF: MeasureProfile start
17-03-17 21:52:00.478 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:00.478 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:00.488 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:00.488 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:00.488 -07 000000547 INF: MeasureProfile done
17-03-17 21:52:00.488 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:52:00.488 -07 000000547 INF: Autofocus finished
17-03-17 21:52:00.688 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:00.688 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:00.688 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.174074735001249. ----------
17-03-17 21:52:00.688 -07 000000610 INF: Cycle	56	Tile	17	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:00.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36540, sync = True, waitForSettling = True)
17-03-17 21:52:00.698 -07 000000610 INF: Z Motor: Moving to -0.167269 mm, started at -0.174075 mm, distance = 6.81 um
17-03-17 21:52:00.698 -07 000000610 INF: FPGA: Xmit ZDACW 36540\n [Z Motor]
17-03-17 21:52:00.698 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:52:00.708 -07 000000610 INF: FPGA: 'ZDACW 36540' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:00.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:00.708 -07 000000458 INF: FPGA: Recv ZDACR 36540
17-03-17 21:52:00.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:00.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.868 -07 000000569 INF: FPGA: Recv ZSGSRD 35326
17-03-17 21:52:00.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.878 -07 000000626 INF: FPGA: Recv ZSGSRD 35330
17-03-17 21:52:00.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.888 -07 000000424 INF: FPGA: Recv ZSGSRD 35327
17-03-17 21:52:00.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.898 -07 000000627 INF: FPGA: Recv ZSGSRD 35325
17-03-17 21:52:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35331
17-03-17 21:52:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.918 -07 000000475 INF: FPGA: Recv ZSGSRD 35331
17-03-17 21:52:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.928 -07 000000438 INF: FPGA: Recv ZSGSRD 35331
17-03-17 21:52:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35328
17-03-17 21:52:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35325
17-03-17 21:52:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:00.958 -07 000000459 INF: FPGA: Recv ZSGSRD 35326
17-03-17 21:52:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:00.968 -07 000000424 INF: FPGA: Recv ZPIEZORD 31304
17-03-17 21:52:00.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:00.978 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -8.9 V.
17-03-17 21:52:00.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35328 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35328 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35325 (-166.4 uncal um), Max = 35331 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:52:00.978 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35328, posNoise = 3, negNoise = 3
17-03-17 21:52:00.978 -07 000000610 INF: Z Motor: After move to -0.167269, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:00.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:00.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:00.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:00.978 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:00.978 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:00.978 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:00.978 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:00.978 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:00.978 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:00.978 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:00.978 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:00.978 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:00.978 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:00.988 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:52:00.988 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:00.988 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:00.988 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:00.998 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:52:00.998 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:52:00.998 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:52:00.998 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:52:00.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36717 150\n [Camera]
17-03-17 21:52:01.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:01.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:01.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:01.638 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:01.638 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:01.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:01.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:01.638 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:01.638 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:52:01.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:01.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:52:01.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36717 825
17-03-17 21:52:01.918 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:01.978 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:02.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:52:02.018 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:52:02.018 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:02.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:52:02.028 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:52:02.028 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:02.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:02.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:52:02.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:02.038 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:52:02.188 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:02.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:02.188 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:02.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:02.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:02.198 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:02.198 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:02.198 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:52:02.198 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:02.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:52:02.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:02.388 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:02.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36717 150' command took 2 ms to send, 1380 ms to get response, and 1386 ms overall
17-03-17 21:52:02.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:52:02.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.167277918555266. ------
17-03-17 21:52:02.388 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:02.388 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17363 mm
17-03-17 21:52:02.388 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:02.388 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:02.388 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:52:02.388 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:52:02.388 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37929, sync = True, waitForSettling = False)
17-03-17 21:52:02.388 -07 000000480 INF: Z Motor: Moving to -0.173628 mm, started at -0.167278 mm, distance = -6.35 um
17-03-17 21:52:02.398 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:52:02.398 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:02.518 -07 000000569 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:52:02.528 -07 000000480 INF: FPGA: Xmit ZDACW 37929\n [Z Motor]
17-03-17 21:52:02.528 -07 000000382 INF: FPGA: 'YRDPOS' command took 124 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 21:52:02.528 -07 000000382 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:02.528 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:02.528 -07 000000382 INF: Y Motor: Moving 1355 steps-34
17-03-17 21:52:02.528 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:52:02.538 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:02.538 -07 000000480 INF: FPGA: 'ZDACW 37929' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-17 21:52:02.548 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:02.558 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:02.558 -07 000000438 INF: FPGA: Recv ZDACR 37929
17-03-17 21:52:02.568 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:02.568 -07 000000480 INF: Z Motor: MoveAbsStepped took 170 ms (did NOT wait for settling yet))
17-03-17 21:52:02.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:52:02.588 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:52:02.588 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:02.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:52:02.588 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:52:02.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:02.588 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:02.588 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:52:02.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:02.598 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:52:02.738 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:02.738 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 21:52:02.918 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:52:02.918 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:52:02.948 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:02.958 -07 000000547 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:52:02.968 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:02.968 -07 000000382 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:02.968 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:52:02.968 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 21:52:03.918 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:03.918 -07 000000608 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:52:03.928 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:03.928 -07 000000382 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:03.938 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:03.938 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:52:03.938 -07 000000382 INF: Y Motor: Moved to 74.0078 after 1548 ms (table move)
17-03-17 21:52:03.948 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173628 mm (DAC = 37929)
17-03-17 21:52:03.948 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:03.948 -07 000000512 INF: FPGA: Recv ZSGSRD 36324
17-03-17 21:52:03.958 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:03.958 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:03.958 -07 000000476 INF: FPGA: Recv ZSGSRD 36320
17-03-17 21:52:03.968 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:03.968 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:03.968 -07 000000431 INF: FPGA: Recv ZSGSRD 36312
17-03-17 21:52:03.978 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:03.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:03.978 -07 000000608 INF: FPGA: Recv ZSGSRD 36325
17-03-17 21:52:03.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:03.988 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:03.988 -07 000000569 INF: FPGA: Recv ZSGSRD 36318
17-03-17 21:52:03.998 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:03.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:03.998 -07 000000547 INF: FPGA: Recv ZSGSRD 36317
17-03-17 21:52:04.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.008 -07 000000475 INF: FPGA: Recv ZSGSRD 36311
17-03-17 21:52:04.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36318
17-03-17 21:52:04.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.028 -07 000000608 INF: FPGA: Recv ZSGSRD 36323
17-03-17 21:52:04.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36320
17-03-17 21:52:04.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.048 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:04.048 -07 000000431 INF: FPGA: Recv ZPIEZORD 32654
17-03-17 21:52:04.058 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.058 -07 000000415 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.788 V. Piezo Error = -8.1 V.
17-03-17 21:52:04.058 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36319 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36319 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36311 (-172.7 uncal um), Max = 36325 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:52:04.058 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36319, posNoise = 6, negNoise = 8
17-03-17 21:52:04.058 -07 000000415 INF: Z Motor: After move to -0.173628, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:04.058 -07 000000415 INF: Z Motor: Settle wait time = 1552 ms, measure time = 109 ms (allowed 150 ms), total time = 1661 ms
17-03-17 21:52:04.058 -07 000000415 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:04.108 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 21:52:04.108 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:04.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:04.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:04.108 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:04.108 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:04.108 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:04.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:04.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:04.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:04.118 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:04.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:04.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:52:04.118 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:52:04.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:04.168 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:04.368 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:04.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:04.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:04.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:52:04.408 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:04.408 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:04.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:52:04.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:52:04.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:04.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:04.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:52:04.508 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:04.508 -07 000000424 INF: Autofocus start
17-03-17 21:52:04.508 -07 000000424 INF: MeasureProfile start
17-03-17 21:52:04.508 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:04.518 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:04.518 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:04.518 -07 000000424 INF: MeasureProfile done
17-03-17 21:52:04.518 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:52:04.518 -07 000000424 INF: Autofocus finished
17-03-17 21:52:04.718 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:04.718 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:52:04.718 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173644312787751. ----------
17-03-17 21:52:04.718 -07 000000610 INF: Cycle	56	Tile	18	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:04.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36426, sync = True, waitForSettling = True)
17-03-17 21:52:04.728 -07 000000610 INF: Z Motor: Moving to -0.166748 mm, started at -0.173644 mm, distance = 6.90 um
17-03-17 21:52:04.728 -07 000000610 INF: FPGA: Xmit ZDACW 36426\n [Z Motor]
17-03-17 21:52:04.728 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:52:04.738 -07 000000610 INF: FPGA: 'ZDACW 36426' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:04.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:04.738 -07 000000576 INF: FPGA: Recv ZDACR 36426
17-03-17 21:52:04.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.898 -07 000000480 INF: FPGA: Recv ZSGSRD 35247
17-03-17 21:52:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.908 -07 000000458 INF: FPGA: Recv ZSGSRD 35240
17-03-17 21:52:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.918 -07 000000547 INF: FPGA: Recv ZSGSRD 35246
17-03-17 21:52:04.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35252
17-03-17 21:52:04.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.938 -07 000000475 INF: FPGA: Recv ZSGSRD 35247
17-03-17 21:52:04.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.948 -07 000000480 INF: FPGA: Recv ZSGSRD 35250
17-03-17 21:52:04.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.958 -07 000000438 INF: FPGA: Recv ZSGSRD 35246
17-03-17 21:52:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35242
17-03-17 21:52:04.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.978 -07 000000424 INF: FPGA: Recv ZSGSRD 35245
17-03-17 21:52:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:04.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35245
17-03-17 21:52:04.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:04.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:04.998 -07 000000627 INF: FPGA: Recv ZPIEZORD 31192
17-03-17 21:52:05.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:05.008 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -8.9 V.
17-03-17 21:52:05.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35246 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35246 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35240 (-165.8 uncal um), Max = 35252 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:05.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35246, posNoise = 6, negNoise = 6
17-03-17 21:52:05.008 -07 000000610 INF: Z Motor: After move to -0.166748, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:05.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:05.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:05.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:05.008 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:05.008 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:05.008 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:05.008 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:05.008 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:05.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:05.008 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:05.008 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:05.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:05.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:05.018 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:05.018 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:05.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:05.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:05.028 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 21:52:05.028 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:52:05.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:52:05.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:52:05.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36603 150\n [Camera]
17-03-17 21:52:05.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:05.448 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.970374,
17-03-17 21:52:05.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:05.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:05.678 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:05.678 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:05.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:05.678 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:05.678 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:05.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:52:05.688 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:05.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:52:05.868 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36603 825
17-03-17 21:52:06.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 21:52:06.068 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:52:06.068 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:52:06.068 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:06.068 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:06.068 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:52:06.068 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:52:06.068 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:06.078 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:06.078 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:52:06.078 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:52:06.228 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:06.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:06.228 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:06.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:06.228 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:06.228 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:52:06.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:06.238 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:06.238 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:06.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) start.
17-03-17 21:52:06.418 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:06.418 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:06.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36603 150' command took 2 ms to send, 1378 ms to get response, and 1386 ms overall
17-03-17 21:52:06.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:52:06.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166751133159642. ------
17-03-17 21:52:06.428 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:06.428 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17321 mm
17-03-17 21:52:06.428 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:06.428 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:52:06.428 -07 000000608 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:52:06.428 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37838, sync = True, waitForSettling = False)
17-03-17 21:52:06.428 -07 000000382 INF: Z Motor: Moving to -0.173211 mm, started at -0.166751 mm, distance = -6.46 um
17-03-17 21:52:06.428 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:06.438 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:06.438 -07 000000382 INF: FPGA: Xmit ZDACW 37838\n [Z Motor]
17-03-17 21:52:06.438 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:52:06.448 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:06.448 -07 000000382 INF: FPGA: 'ZDACW 37838' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:52:06.448 -07 000000429 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:52:06.458 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:52:06.458 -07 000000608 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:06.458 -07 000000608 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:06.458 -07 000000608 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:52:06.458 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:06.468 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:06.468 -07 000000627 INF: FPGA: Recv ZDACR 37838
17-03-17 21:52:06.478 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:06.478 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:06.478 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:52:06.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:52:06.638 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:52:06.638 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:06.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 21:52:06.638 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:52:06.638 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:06.638 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:06.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:06.648 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 21:52:06.648 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:52:06.658 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:06.658 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:52:06.848 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:52:06.848 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:52:06.878 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:06.878 -07 000000476 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:52:06.888 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:06.888 -07 000000608 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:06.888 -07 000000608 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:52:06.888 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 21:52:06.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:06.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:07.838 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:07.838 -07 000000012 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:52:07.848 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.848 -07 000000608 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:07.858 -07 000000608 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:07.858 -07 000000608 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:07.858 -07 000000608 INF: Y Motor: Moved to 74.8315 after 1430 ms (table move)
17-03-17 21:52:07.858 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173211 mm (DAC = 37838)
17-03-17 21:52:07.858 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.868 -07 000000459 INF: FPGA: Recv ZSGSRD 36253
17-03-17 21:52:07.878 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:07.878 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.878 -07 000000476 INF: FPGA: Recv ZSGSRD 36253
17-03-17 21:52:07.888 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.888 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36246
17-03-17 21:52:07.898 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.898 -07 000000429 INF: FPGA: Recv ZSGSRD 36245
17-03-17 21:52:07.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.908 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.908 -07 000000480 INF: FPGA: Recv ZSGSRD 36243
17-03-17 21:52:07.918 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.918 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.918 -07 000000627 INF: FPGA: Recv ZSGSRD 36245
17-03-17 21:52:07.928 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.928 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.928 -07 000000438 INF: FPGA: Recv ZSGSRD 36255
17-03-17 21:52:07.938 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.938 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.938 -07 000000382 INF: FPGA: Recv ZSGSRD 36250
17-03-17 21:52:07.948 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.948 -07 000000576 INF: FPGA: Recv ZSGSRD 36255
17-03-17 21:52:07.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:07.958 -07 000000458 INF: FPGA: Recv ZSGSRD 36249
17-03-17 21:52:07.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.968 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:07.968 -07 000000475 INF: FPGA: Recv ZPIEZORD 32575
17-03-17 21:52:07.978 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:07.978 -07 000000512 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.1 V.
17-03-17 21:52:07.978 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36249 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36250 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36243 (-172.3 uncal um), Max = 36255 (-172.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:07.978 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36249, posNoise = 6, negNoise = 6
17-03-17 21:52:07.978 -07 000000512 INF: Z Motor: After move to -0.173211, error = 0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:07.978 -07 000000512 INF: Z Motor: Settle wait time = 1433 ms, measure time = 111 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:52:07.978 -07 000000512 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:08.018 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 21:52:08.018 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:08.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:08.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:08.018 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:08.018 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:08.018 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:08.018 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:08.018 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:08.018 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:08.028 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:08.028 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:08.038 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:52:08.038 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:52:08.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:08.078 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:08.278 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:08.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:08.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:08.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:52:08.318 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:08.318 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:08.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:52:08.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:52:08.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:08.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:08.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:52:08.518 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:08.518 -07 000000626 INF: Autofocus start
17-03-17 21:52:08.518 -07 000000626 INF: MeasureProfile start
17-03-17 21:52:08.518 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:08.528 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:52:08.528 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:08.528 -07 000000626 INF: MeasureProfile done
17-03-17 21:52:08.528 -07 000000626 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:52:08.528 -07 000000626 INF: Autofocus finished
17-03-17 21:52:08.728 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:08.728 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:08.728 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.173194617937828. ----------
17-03-17 21:52:08.728 -07 000000610 INF: Cycle	56	Tile	19	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:08.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36317, sync = True, waitForSettling = True)
17-03-17 21:52:08.738 -07 000000610 INF: Z Motor: Moving to -0.166249 mm, started at -0.173195 mm, distance = 6.95 um
17-03-17 21:52:08.738 -07 000000610 INF: FPGA: Xmit ZDACW 36317\n [Z Motor]
17-03-17 21:52:08.738 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:52:08.748 -07 000000610 INF: FPGA: 'ZDACW 36317' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:08.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:08.748 -07 000000608 INF: FPGA: Recv ZDACR 36317
17-03-17 21:52:08.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.908 -07 000000415 INF: FPGA: Recv ZSGSRD 35164
17-03-17 21:52:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.918 -07 000000569 INF: FPGA: Recv ZSGSRD 35169
17-03-17 21:52:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35166
17-03-17 21:52:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.938 -07 000000476 INF: FPGA: Recv ZSGSRD 35172
17-03-17 21:52:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.948 -07 000000512 INF: FPGA: Recv ZSGSRD 35170
17-03-17 21:52:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.958 -07 000000424 INF: FPGA: Recv ZSGSRD 35172
17-03-17 21:52:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.968 -07 000000626 INF: FPGA: Recv ZSGSRD 35166
17-03-17 21:52:08.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.978 -07 000000012 INF: FPGA: Recv ZSGSRD 35166
17-03-17 21:52:08.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35168
17-03-17 21:52:08.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:08.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:08.998 -07 000000608 INF: FPGA: Recv ZSGSRD 35170
17-03-17 21:52:09.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:09.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:09.008 -07 000000576 INF: FPGA: Recv ZPIEZORD 31106
17-03-17 21:52:09.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:09.018 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.0 V.
17-03-17 21:52:09.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35168 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35168 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35164 (-165.4 uncal um), Max = 35172 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:52:09.018 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35168, posNoise = 4, negNoise = 4
17-03-17 21:52:09.018 -07 000000610 INF: Z Motor: After move to -0.166249, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:09.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:09.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:09.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:09.018 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:09.018 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:09.018 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:09.018 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:09.018 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:09.018 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:09.018 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:09.018 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:09.018 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:09.018 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:09.028 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:09.028 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:09.028 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:09.028 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:09.038 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:52:09.038 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:52:09.038 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:52:09.038 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:52:09.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 36494 150\n [Camera]
17-03-17 21:52:09.238 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:09.678 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:09.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:09.678 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:09.678 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:09.678 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) start.
17-03-17 21:52:09.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:09.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:09.678 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:09.678 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:09.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:52:09.868 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36494 825
17-03-17 21:52:10.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 21:52:10.058 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2374121904, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:52:10.058 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:52:10.058 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:10.058 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:52:10.058 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:52:10.058 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:10.058 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:10.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:10.058 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:52:10.068 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:52:10.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:10.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:10.228 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:10.228 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:10.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 21:52:10.238 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:10.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:10.238 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:10.238 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:10.238 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:52:10.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:10.418 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:10.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 36494 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-17 21:52:10.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:52:10.618 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:52:10.618 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:10.618 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:10.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:52:10.618 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:52:10.618 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:10.628 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:52:10.628 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:52:10.628 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:52:10.628 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:52:10.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:52:10.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:52:10.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:52:10.718 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:52:10.718 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:52:10.718 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 21:52:10.728 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:10.858 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:52:10.858 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.975845,
17-03-17 21:52:11.358 -07 000000608 INF: FPGA: Recv EMIN
17-03-17 21:52:11.358 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 519 ms overall
17-03-17 21:52:11.358 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:52:11.358 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 21:52:11.368 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:11.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:11.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166250044612584. ------
17-03-17 21:52:11.368 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:11.368 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14048 mm
17-03-17 21:52:11.368 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:11.368 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:11.378 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:11.378 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:52:11.378 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:52:11.378 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30687, sync = True, waitForSettling = False)
17-03-17 21:52:11.378 -07 000000382 INF: Z Motor: Moving to -0.140476 mm, started at -0.166250 mm, distance = 25.77 um
17-03-17 21:52:11.378 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:11.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:11.388 -07 000000569 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:52:11.398 -07 000000382 INF: FPGA: Xmit ZDACW 30687\n [Z Motor]
17-03-17 21:52:11.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:11.398 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:11.398 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:52:11.398 -07 000000431 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:52:11.398 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:52:11.408 -07 000000382 INF: FPGA: 'ZDACW 30687' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:52:11.408 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:11.408 -07 000000547 INF: FPGA: Recv ZDACR 30687
17-03-17 21:52:11.418 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:11.418 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:52:11.418 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:52:11.578 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:11.578 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 21:52:11.918 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:11.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:13.048 -07 000000415 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:52:13.048 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1646 ms overall
17-03-17 21:52:13.048 -07 000000431 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:52:13.048 -07 000000431 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:52:13.048 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.919 mm, average velocity = 9.064 mm/sec
17-03-17 21:52:15.898 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:15.898 -07 000000480 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:52:15.908 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:15.908 -07 000000431 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:15.938 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:15.938 -07 000000431 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 21:52:15.938 -07 000000431 INF: Y Motor: Moved to 59.9111 after 4568 ms
17-03-17 21:52:15.948 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140476 mm (DAC = 30687)
17-03-17 21:52:15.948 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:15.948 -07 000000627 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:52:15.958 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:15.958 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:15.958 -07 000000459 INF: FPGA: Recv ZSGSRD 31160
17-03-17 21:52:15.968 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:15.968 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:15.968 -07 000000608 INF: FPGA: Recv ZSGSRD 31159
17-03-17 21:52:15.978 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:15.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:15.978 -07 000000512 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:52:15.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:15.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:15.988 -07 000000475 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:52:15.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:15.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:15.998 -07 000000415 INF: FPGA: Recv ZSGSRD 31162
17-03-17 21:52:16.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.008 -07 000000429 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:52:16.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.018 -07 000000431 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:52:16.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.028 -07 000000458 INF: FPGA: Recv ZSGSRD 31162
17-03-17 21:52:16.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.038 -07 000000459 INF: FPGA: Recv ZSGSRD 31159
17-03-17 21:52:16.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.048 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:16.048 -07 000000415 INF: FPGA: Recv ZPIEZORD 26869
17-03-17 21:52:16.058 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.058 -07 000000576 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.4 V.
17-03-17 21:52:16.058 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31158 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31158 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31154 (-139.7 uncal um), Max = 31162 (-139.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:52:16.058 -07 000000576 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31158, posNoise = 4, negNoise = 4
17-03-17 21:52:16.058 -07 000000576 INF: Z Motor: After move to -0.140476, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:16.058 -07 000000576 INF: Z Motor: Settle wait time = 4568 ms, measure time = 110 ms (allowed 150 ms), total time = 4678 ms
17-03-17 21:52:16.058 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:16.098 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-17 21:52:16.098 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:16.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:16.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:16.098 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:16.098 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:16.098 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:16.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:16.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:16.098 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:52:16.118 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 21:52:16.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:16.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:16.128 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:16.128 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:52:16.128 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 21:52:16.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:16.178 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:16.228 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.007176,
17-03-17 21:52:16.378 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:16.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:16.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:16.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:52:16.418 -07 000000438 INF: FPGA: Recv @CAMSNAP 283
17-03-17 21:52:16.418 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:16.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 21:52:16.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:52:16.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:16.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:52:16.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:52:16.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:16.518 -07 000000569 INF: Image SNR check: start
17-03-17 21:52:16.518 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:16.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:16.538 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:16.538 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=60.54]
17-03-17 21:52:16.538 -07 000000569 INF: Autofocus start
17-03-17 21:52:16.538 -07 000000569 INF: MeasureProfile start
17-03-17 21:52:16.548 -07 000000569 INF: MeasureProfile done
17-03-17 21:52:16.548 -07 000000569 INF: X=11  Z correction [um]=0.02896596
17-03-17 21:52:16.548 -07 000000569 INF: Autofocus finished
17-03-17 21:52:16.738 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:16.738 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 21:52:16.738 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140488953924123. ----------
17-03-17 21:52:16.738 -07 000000610 INF: Cycle	56	Tile	1	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:16.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29206, sync = True, waitForSettling = True)
17-03-17 21:52:16.748 -07 000000610 INF: Z Motor: Moving to -0.133696 mm, started at -0.140489 mm, distance = 6.79 um
17-03-17 21:52:16.748 -07 000000610 INF: FPGA: Xmit ZDACW 29206\n [Z Motor]
17-03-17 21:52:16.748 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:52:16.758 -07 000000610 INF: FPGA: 'ZDACW 29206' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:16.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:16.758 -07 000000475 INF: FPGA: Recv ZDACR 29206
17-03-17 21:52:16.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.918 -07 000000608 INF: FPGA: Recv ZSGSRD 30104
17-03-17 21:52:16.918 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.928 -07 000000576 INF: FPGA: Recv ZSGSRD 30102
17-03-17 21:52:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.938 -07 000000547 INF: FPGA: Recv ZSGSRD 30102
17-03-17 21:52:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.948 -07 000000459 INF: FPGA: Recv ZSGSRD 30099
17-03-17 21:52:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.958 -07 000000501 INF: FPGA: Recv ZSGSRD 30101
17-03-17 21:52:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.968 -07 000000569 INF: FPGA: Recv ZSGSRD 30107
17-03-17 21:52:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.978 -07 000000501 INF: FPGA: Recv ZSGSRD 30091
17-03-17 21:52:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.988 -07 000000480 INF: FPGA: Recv ZSGSRD 30099
17-03-17 21:52:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:16.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:16.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30100
17-03-17 21:52:17.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:17.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:17.008 -07 000000476 INF: FPGA: Recv ZSGSRD 30100
17-03-17 21:52:17.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:17.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:17.018 -07 000000459 INF: FPGA: Recv ZPIEZORD 25768
17-03-17 21:52:17.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:17.028 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.5 V.
17-03-17 21:52:17.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30100 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30100 (-132.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30091 (-132.8 uncal um), Max = 30107 (-132.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:52:17.028 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30100, posNoise = 7, negNoise = 9
17-03-17 21:52:17.028 -07 000000610 INF: Z Motor: After move to -0.133696, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:17.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:17.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:17.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:17.028 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:17.028 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:17.028 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:17.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:17.028 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:17.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:17.028 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:17.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:17.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:17.028 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:52:17.038 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:17.038 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:17.048 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:52:17.048 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:52:17.058 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:52:17.058 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:17.058 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:52:17.058 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:17.068 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:52:17.068 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 34 ms.
17-03-17 21:52:17.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29383 150\n [Camera]
17-03-17 21:52:17.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:17.708 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:17.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:17.708 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:17.708 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:17.708 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:52:17.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:17.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:17.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:17.718 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:17.718 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:52:17.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29383 825
17-03-17 21:52:18.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:18.108 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:52:18.108 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:52:18.108 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:18.108 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:18.108 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:52:18.108 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:52:18.108 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:52:18.108 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:18.118 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:18.118 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:52:18.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:18.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:18.268 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:18.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:18.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:18.268 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:18.378 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:18.378 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:52:18.388 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:18.388 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:52:18.458 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:18.458 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:18.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29383 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-17 21:52:18.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:18.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.13369213747814. ------
17-03-17 21:52:18.458 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:18.458 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14019 mm
17-03-17 21:52:18.458 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:18.458 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:52:18.458 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 21:52:18.458 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:18.468 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:18.468 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:18.468 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30625, sync = True, waitForSettling = False)
17-03-17 21:52:18.468 -07 000000429 INF: Z Motor: Moving to -0.140192 mm, started at -0.133692 mm, distance = -6.50 um
17-03-17 21:52:18.468 -07 000000438 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:52:18.478 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:18.478 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:18.478 -07 000000382 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:18.478 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:18.478 -07 000000382 INF: Y Motor: Moving 1330 steps2
17-03-17 21:52:18.488 -07 000000429 INF: FPGA: Xmit ZDACW 30625\n [Z Motor]
17-03-17 21:52:18.488 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:52:18.498 -07 000000429 INF: FPGA: 'ZDACW 30625' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:18.498 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:18.508 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:18.508 -07 000000576 INF: FPGA: Recv ZDACR 30625
17-03-17 21:52:18.518 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:18.518 -07 000000429 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:52:18.678 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:18.678 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:52:18.778 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:52:18.778 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:52:18.778 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:18.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:52:18.778 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:52:18.778 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:18.788 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:18.788 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:18.788 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 21:52:18.788 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 21:52:18.868 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:52:18.868 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:52:18.898 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:18.908 -07 000000438 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:52:18.908 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:52:18.908 -07 000000382 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:18.908 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:52:18.908 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 21:52:19.858 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:19.858 -07 000000459 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:52:19.868 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.868 -07 000000382 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:19.888 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:19.888 -07 000000382 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:52:19.888 -07 000000382 INF: Y Motor: Moved to 60.7334 after 1424 ms (table move)
17-03-17 21:52:19.888 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140192 mm (DAC = 30625)
17-03-17 21:52:19.888 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.898 -07 000000569 INF: FPGA: Recv ZSGSRD 31121
17-03-17 21:52:19.898 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:52:19.898 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.898 -07 000000438 INF: FPGA: Recv ZSGSRD 31107
17-03-17 21:52:19.908 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:19.908 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.908 -07 000000429 INF: FPGA: Recv ZSGSRD 31119
17-03-17 21:52:19.918 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.918 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.918 -07 000000012 INF: FPGA: Recv ZSGSRD 31119
17-03-17 21:52:19.928 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:19.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.928 -07 000000626 INF: FPGA: Recv ZSGSRD 31116
17-03-17 21:52:19.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.938 -07 000000569 INF: FPGA: Recv ZSGSRD 31117
17-03-17 21:52:19.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.948 -07 000000438 INF: FPGA: Recv ZSGSRD 31109
17-03-17 21:52:19.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.958 -07 000000424 INF: FPGA: Recv ZSGSRD 31113
17-03-17 21:52:19.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.968 -07 000000012 INF: FPGA: Recv ZSGSRD 31108
17-03-17 21:52:19.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:19.978 -07 000000512 INF: FPGA: Recv ZSGSRD 31112
17-03-17 21:52:19.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.988 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:19.988 -07 000000431 INF: FPGA: Recv ZPIEZORD 27105
17-03-17 21:52:19.998 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:19.998 -07 000000475 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.673 V. Piezo Error = -8.8 V.
17-03-17 21:52:19.998 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31114 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31114 (-139.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31107 (-139.4 uncal um), Max = 31121 (-139.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:52:19.998 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31114, posNoise = 7, negNoise = 7
17-03-17 21:52:19.998 -07 000000475 INF: Z Motor: After move to -0.140192, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:19.998 -07 000000475 INF: Z Motor: Settle wait time = 1427 ms, measure time = 103 ms (allowed 150 ms), total time = 1530 ms
17-03-17 21:52:19.998 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:20.048 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:52:20.048 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:20.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:20.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:20.048 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:20.048 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:20.048 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:20.048 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:20.048 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:20.048 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:20.058 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:20.058 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:20.068 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:52:20.068 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:52:20.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:20.118 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:20.318 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:20.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:20.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:20.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 21:52:20.358 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:20.358 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:20.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:52:20.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:52:20.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:20.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:20.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:52:20.458 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:20.458 -07 000000476 INF: Autofocus start
17-03-17 21:52:20.458 -07 000000476 INF: MeasureProfile start
17-03-17 21:52:20.458 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:20.468 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:52:20.468 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:20.468 -07 000000476 INF: MeasureProfile done
17-03-17 21:52:20.468 -07 000000476 INF: X=-23  Z correction [um]=-0.1153628
17-03-17 21:52:20.468 -07 000000476 INF: Autofocus finished
17-03-17 21:52:20.668 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:20.668 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:20.668 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140206288589885. ----------
17-03-17 21:52:20.668 -07 000000610 INF: Cycle	56	Tile	2	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:20.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29112, sync = True, waitForSettling = True)
17-03-17 21:52:20.678 -07 000000610 INF: Z Motor: Moving to -0.133266 mm, started at -0.140206 mm, distance = 6.94 um
17-03-17 21:52:20.678 -07 000000610 INF: FPGA: Xmit ZDACW 29112\n [Z Motor]
17-03-17 21:52:20.678 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:52:20.688 -07 000000610 INF: FPGA: 'ZDACW 29112' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:20.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:20.688 -07 000000569 INF: FPGA: Recv ZDACR 29112
17-03-17 21:52:20.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:20.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.848 -07 000000608 INF: FPGA: Recv ZSGSRD 30041
17-03-17 21:52:20.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:20.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.858 -07 000000429 INF: FPGA: Recv ZSGSRD 30032
17-03-17 21:52:20.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.868 -07 000000480 INF: FPGA: Recv ZSGSRD 30033
17-03-17 21:52:20.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.878 -07 000000627 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:52:20.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:52:20.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.898 -07 000000438 INF: FPGA: Recv ZSGSRD 30037
17-03-17 21:52:20.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.908 -07 000000476 INF: FPGA: Recv ZSGSRD 30031
17-03-17 21:52:20.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.918 -07 000000501 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:52:20.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.928 -07 000000459 INF: FPGA: Recv ZSGSRD 30041
17-03-17 21:52:20.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:20.938 -07 000000547 INF: FPGA: Recv ZSGSRD 30028
17-03-17 21:52:20.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:20.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:20.948 -07 000000424 INF: FPGA: Recv ZPIEZORD 25703
17-03-17 21:52:20.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:20.958 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.5 V.
17-03-17 21:52:20.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30035 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30035 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30028 (-132.4 uncal um), Max = 30041 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:52:20.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30035, posNoise = 6, negNoise = 7
17-03-17 21:52:20.958 -07 000000610 INF: Z Motor: After move to -0.133266, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:20.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:20.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:20.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:20.958 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:20.958 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:20.958 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:20.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:20.958 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:20.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:20.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:20.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:20.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:20.958 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:20.968 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:20.968 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:20.968 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:20.968 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:20.978 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:52:20.978 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:52:20.978 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:52:20.978 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:52:20.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29289 150\n [Camera]
17-03-17 21:52:21.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:21.588 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.983999,
17-03-17 21:52:21.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:52:21.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:52:21.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:52:21.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:52:21.628 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:21.628 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:21.628 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:21.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) start.
17-03-17 21:52:21.628 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:21.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:52:21.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29289 825
17-03-17 21:52:21.918 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:21.968 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:22.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:52:22.028 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:52:22.028 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:22.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:52:22.028 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:52:22.028 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:22.028 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:22.028 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:22.038 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:52:22.038 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:52:22.178 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:22.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:22.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:22.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:22.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:22.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:22.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2334294336, 0x0, 391868352) start.
17-03-17 21:52:22.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:22.178 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:22.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2369716600, 0x0, 418435064) start.
17-03-17 21:52:22.368 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:22.368 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:22.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29289 150' command took 2 ms to send, 1376 ms to get response, and 1386 ms overall
17-03-17 21:52:22.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:22.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133274563688925. ------
17-03-17 21:52:22.378 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13959 mm
17-03-17 21:52:22.378 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:22.378 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:22.378 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:52:22.378 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 21:52:22.378 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30494, sync = True, waitForSettling = False)
17-03-17 21:52:22.378 -07 000000458 INF: Z Motor: Moving to -0.139593 mm, started at -0.133275 mm, distance = -6.32 um
17-03-17 21:52:22.378 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:22.388 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:52:22.388 -07 000000458 INF: FPGA: Xmit ZDACW 30494\n [Z Motor]
17-03-17 21:52:22.388 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:52:22.398 -07 000000458 INF: FPGA: 'ZDACW 30494' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:52:22.398 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:22.398 -07 000000476 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:52:22.408 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:22.408 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:52:22.408 -07 000000424 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:22.408 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:22.408 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:52:22.418 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:22.418 -07 000000476 INF: FPGA: Recv ZDACR 30494
17-03-17 21:52:22.428 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:22.428 -07 000000458 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:52:22.428 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:22.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2369716600, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:52:22.578 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:52:22.578 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:22.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2334294336, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:52:22.578 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:52:22.578 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:22.578 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:22.578 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:22.578 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:52:22.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:52:22.608 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:22.608 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:52:22.798 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:52:22.798 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:52:22.838 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:22.838 -07 000000608 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:52:22.848 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:22.848 -07 000000424 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:22.848 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:52:22.848 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 21:52:23.798 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:23.798 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:52:23.808 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:23.808 -07 000000424 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:23.828 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:23.828 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:23.828 -07 000000424 INF: Y Motor: Moved to 61.5640 after 1446 ms (table move)
17-03-17 21:52:23.828 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139593 mm (DAC = 30494)
17-03-17 21:52:23.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.838 -07 000000459 INF: FPGA: Recv ZSGSRD 31028
17-03-17 21:52:23.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:52:23.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.838 -07 000000382 INF: FPGA: Recv ZSGSRD 31016
17-03-17 21:52:23.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:23.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.848 -07 000000627 INF: FPGA: Recv ZSGSRD 31017
17-03-17 21:52:23.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.858 -07 000000576 INF: FPGA: Recv ZSGSRD 31024
17-03-17 21:52:23.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.868 -07 000000415 INF: FPGA: Recv ZSGSRD 31026
17-03-17 21:52:23.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.878 -07 000000547 INF: FPGA: Recv ZSGSRD 31027
17-03-17 21:52:23.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.888 -07 000000012 INF: FPGA: Recv ZSGSRD 31016
17-03-17 21:52:23.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.898 -07 000000458 INF: FPGA: Recv ZSGSRD 31011
17-03-17 21:52:23.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.908 -07 000000626 INF: FPGA: Recv ZSGSRD 31017
17-03-17 21:52:23.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.918 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:23.918 -07 000000424 INF: FPGA: Recv ZSGSRD 31019
17-03-17 21:52:23.928 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.928 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:23.928 -07 000000547 INF: FPGA: Recv ZPIEZORD 27044
17-03-17 21:52:23.938 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:23.938 -07 000000480 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.653 V. Piezo Error = -8.8 V.
17-03-17 21:52:23.938 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31020 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31018 (-138.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31011 (-138.7 uncal um), Max = 31028 (-138.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:52:23.938 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31020, posNoise = 8, negNoise = 9
17-03-17 21:52:23.938 -07 000000480 INF: Z Motor: After move to -0.139593, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:23.938 -07 000000480 INF: Z Motor: Settle wait time = 1451 ms, measure time = 101 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:52:23.938 -07 000000480 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:23.988 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:52:23.988 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:23.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:23.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:23.988 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:23.988 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:23.988 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:23.988 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:23.998 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:23.998 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:23.998 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:23.998 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:24.008 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:52:24.008 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:52:24.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:24.048 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:24.248 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:24.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:24.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:24.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 21:52:24.288 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:24.288 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:24.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:52:24.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:52:24.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:24.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:52:24.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:52:24.388 -07 000000424 INF: Autofocus start
17-03-17 21:52:24.388 -07 000000424 INF: MeasureProfile start
17-03-17 21:52:24.388 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:24.388 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:24.398 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:24.398 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:24.398 -07 000000424 INF: MeasureProfile done
17-03-17 21:52:24.398 -07 000000424 INF: X=48  Z correction [um]=0.2069503
17-03-17 21:52:24.398 -07 000000424 INF: Autofocus finished
17-03-17 21:52:24.598 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:24.598 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:24.598 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13960241264856. ----------
17-03-17 21:52:24.598 -07 000000610 INF: Cycle	56	Tile	3	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:24.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29052, sync = True, waitForSettling = True)
17-03-17 21:52:24.608 -07 000000610 INF: Z Motor: Moving to -0.132992 mm, started at -0.139602 mm, distance = 6.61 um
17-03-17 21:52:24.608 -07 000000610 INF: FPGA: Xmit ZDACW 29052\n [Z Motor]
17-03-17 21:52:24.608 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:52:24.618 -07 000000610 INF: FPGA: 'ZDACW 29052' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:24.618 -07 000000382 INF: FPGA: Recv ZDACR 29052
17-03-17 21:52:24.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:24.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29990
17-03-17 21:52:24.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:24.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.788 -07 000000458 INF: FPGA: Recv ZSGSRD 29991
17-03-17 21:52:24.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.798 -07 000000475 INF: FPGA: Recv ZSGSRD 29997
17-03-17 21:52:24.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29991
17-03-17 21:52:24.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.818 -07 000000415 INF: FPGA: Recv ZSGSRD 29989
17-03-17 21:52:24.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29994
17-03-17 21:52:24.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29993
17-03-17 21:52:24.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.848 -07 000000382 INF: FPGA: Recv ZSGSRD 29993
17-03-17 21:52:24.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.858 -07 000000547 INF: FPGA: Recv ZSGSRD 29987
17-03-17 21:52:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:24.868 -07 000000459 INF: FPGA: Recv ZSGSRD 29994
17-03-17 21:52:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:24.878 -07 000000438 INF: FPGA: Recv ZPIEZORD 25688
17-03-17 21:52:24.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:24.888 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.433 V. Piezo Error = -9.5 V.
17-03-17 21:52:24.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29992 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29992 (-132.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29987 (-132.2 uncal um), Max = 29997 (-132.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:52:24.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29992, posNoise = 5, negNoise = 5
17-03-17 21:52:24.888 -07 000000610 INF: Z Motor: After move to -0.132992, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:24.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:52:24.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:24.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:24.888 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:24.888 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:24.888 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:24.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:24.888 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:24.888 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:24.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:24.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:24.888 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:24.888 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:24.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:24.888 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:24.898 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:52:24.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:24.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:52:24.898 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:52:24.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:52:24.898 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:52:24.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29229 150\n [Camera]
17-03-17 21:52:25.108 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:25.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:25.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:25.548 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:25.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:25.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:52:25.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:25.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:25.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:25.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:25.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:52:25.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29229 825
17-03-17 21:52:25.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:25.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:52:25.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:52:25.938 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:52:25.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:25.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:52:25.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:25.938 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:52:25.938 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:52:25.938 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:52:25.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:52:26.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:26.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:26.108 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:26.108 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:26.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:52:26.108 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:26.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:26.108 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:26.108 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:26.108 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:52:26.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:26.298 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:26.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29229 150' command took 2 ms to send, 1383 ms to get response, and 1388 ms overall
17-03-17 21:52:26.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:26.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.13299832256683. ------
17-03-17 21:52:26.298 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:26.298 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13930 mm
17-03-17 21:52:26.298 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:26.308 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:26.308 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:52:26.308 -07 000000429 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:52:26.308 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30431, sync = True, waitForSettling = False)
17-03-17 21:52:26.308 -07 000000627 INF: Z Motor: Moving to -0.139304 mm, started at -0.132998 mm, distance = -6.31 um
17-03-17 21:52:26.308 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:26.308 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:52:26.308 -07 000000626 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:52:26.318 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:26.318 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:26.318 -07 000000429 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:26.318 -07 000000429 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:26.318 -07 000000429 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:52:26.328 -07 000000627 INF: FPGA: Xmit ZDACW 30431\n [Z Motor]
17-03-17 21:52:26.328 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:52:26.338 -07 000000627 INF: FPGA: 'ZDACW 30431' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:52:26.338 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:26.348 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:26.348 -07 000000424 INF: FPGA: Recv ZDACR 30431
17-03-17 21:52:26.358 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:26.358 -07 000000627 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:52:26.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:52:26.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:52:26.508 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:26.508 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:52:26.508 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:52:26.508 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:26.518 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:26.518 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 21:52:26.518 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:52:26.518 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:26.518 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 208 ms overall
17-03-17 21:52:26.518 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:52:26.718 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:52:26.718 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 21:52:26.758 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:26.758 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:52:26.768 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:26.768 -07 000000429 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:26.768 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:52:26.768 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.839 mm, average velocity = 2.091 mm/sec
17-03-17 21:52:26.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:26.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:26.958 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.012614,
17-03-17 21:52:27.718 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:27.718 -07 000000424 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:52:27.728 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:27.728 -07 000000429 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:27.748 -07 000000429 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:27.748 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:27.748 -07 000000429 INF: Y Motor: Moved to 62.3955 after 1441 ms (table move)
17-03-17 21:52:27.748 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139304 mm (DAC = 30431)
17-03-17 21:52:27.748 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:52:27.758 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:52:27.758 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.758 -07 000000424 INF: FPGA: Recv ZSGSRD 30978
17-03-17 21:52:27.768 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.768 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:52:27.778 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.778 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.778 -07 000000475 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:52:27.788 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.788 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.788 -07 000000608 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:52:27.798 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.798 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.798 -07 000000569 INF: FPGA: Recv ZSGSRD 30970
17-03-17 21:52:27.808 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.808 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.808 -07 000000501 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:52:27.818 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.818 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.818 -07 000000438 INF: FPGA: Recv ZSGSRD 30977
17-03-17 21:52:27.828 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.828 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.828 -07 000000627 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:52:27.838 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:27.838 -07 000000576 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:52:27.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.848 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:27.848 -07 000000012 INF: FPGA: Recv ZPIEZORD 27000
17-03-17 21:52:27.858 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:27.858 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -8.8 V.
17-03-17 21:52:27.858 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30976 (-138.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30970 (-138.5 uncal um), Max = 30978 (-138.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:52:27.858 -07 000000431 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 3, negNoise = 5
17-03-17 21:52:27.858 -07 000000431 INF: Z Motor: After move to -0.139304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:27.858 -07 000000431 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:52:27.858 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:27.908 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:52:27.908 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:27.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:27.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:27.908 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:27.918 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:27.918 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:27.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:27.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:27.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:27.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:27.918 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:27.928 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:52:27.928 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:52:27.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:27.978 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:28.178 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:28.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:28.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:28.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405138864, 0x0, 559484976) start.
17-03-17 21:52:28.218 -07 000000627 INF: FPGA: Recv @CAMSNAP 283
17-03-17 21:52:28.218 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:28.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 21:52:28.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405138864, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:52:28.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:28.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:28.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:52:28.318 -07 000000608 INF: Autofocus start
17-03-17 21:52:28.318 -07 000000608 INF: MeasureProfile start
17-03-17 21:52:28.318 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:28.318 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:28.328 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:28.328 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:28.328 -07 000000608 INF: MeasureProfile done
17-03-17 21:52:28.328 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:52:28.328 -07 000000608 INF: Autofocus finished
17-03-17 21:52:28.528 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:28.528 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:28.528 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139313323102181. ----------
17-03-17 21:52:28.528 -07 000000610 INF: Cycle	56	Tile	4	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:28.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28955, sync = True, waitForSettling = True)
17-03-17 21:52:28.538 -07 000000610 INF: Z Motor: Moving to -0.132547 mm, started at -0.139313 mm, distance = 6.77 um
17-03-17 21:52:28.538 -07 000000610 INF: FPGA: Xmit ZDACW 28955\n [Z Motor]
17-03-17 21:52:28.538 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:52:28.548 -07 000000610 INF: FPGA: 'ZDACW 28955' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:28.548 -07 000000569 INF: FPGA: Recv ZDACR 28955
17-03-17 21:52:28.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:28.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.708 -07 000000608 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:52:28.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.718 -07 000000012 INF: FPGA: Recv ZSGSRD 29927
17-03-17 21:52:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.728 -07 000000424 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:52:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.738 -07 000000458 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:52:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29925
17-03-17 21:52:28.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29926
17-03-17 21:52:28.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.768 -07 000000012 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:52:28.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.778 -07 000000459 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:52:28.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.788 -07 000000475 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:52:28.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:28.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:52:28.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:28.808 -07 000000569 INF: FPGA: Recv ZPIEZORD 25633
17-03-17 21:52:28.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:28.818 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -9.4 V.
17-03-17 21:52:28.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29922 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29922 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29919 (-131.7 uncal um), Max = 29927 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:52:28.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29922, posNoise = 5, negNoise = 3
17-03-17 21:52:28.818 -07 000000610 INF: Z Motor: After move to -0.132547, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:28.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:52:28.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:28.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:28.818 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:28.818 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:28.818 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:28.818 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:28.818 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:28.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:28.818 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:28.818 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:28.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:28.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:28.828 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:28.828 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:28.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:28.828 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:28.828 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:52:28.838 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:52:28.838 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:52:28.838 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:52:28.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29132 150\n [Camera]
17-03-17 21:52:29.038 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:29.478 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:29.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:29.478 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:29.478 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:29.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:52:29.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:29.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:29.478 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:29.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:29.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:52:29.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29132 825
17-03-17 21:52:29.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:29.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:52:29.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:52:29.858 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:29.858 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:29.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:52:29.868 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:52:29.868 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:29.868 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:29.868 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:52:29.868 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:52:30.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:30.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:30.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:30.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:30.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:52:30.038 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:30.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:30.038 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:30.038 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:30.038 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:52:30.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:52:30.228 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:30.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29132 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-17 21:52:30.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:30.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132548627716906. ------
17-03-17 21:52:30.228 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:30.228 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13931 mm
17-03-17 21:52:30.228 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:30.238 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:30.238 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:52:30.238 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:52:30.238 -07 000000476 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:52:30.238 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:30.238 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30432, sync = True, waitForSettling = False)
17-03-17 21:52:30.238 -07 000000547 INF: Z Motor: Moving to -0.139309 mm, started at -0.132549 mm, distance = -6.76 um
17-03-17 21:52:30.248 -07 000000547 INF: FPGA: Xmit ZDACW 30432\n [Z Motor]
17-03-17 21:52:30.248 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:52:30.258 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:30.258 -07 000000547 INF: FPGA: 'ZDACW 30432' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:52:30.258 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:52:30.268 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:52:30.268 -07 000000476 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:30.268 -07 000000476 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:30.268 -07 000000476 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:52:30.268 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:30.268 -07 000000382 INF: FPGA: Recv ZDACR 30432
17-03-17 21:52:30.278 -07 000000547 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:30.278 -07 000000547 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:52:30.278 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:30.438 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:52:30.438 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:52:30.438 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:30.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:52:30.438 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:52:30.438 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:30.438 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:30.438 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 21:52:30.438 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:30.438 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:52:30.438 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:52:30.448 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:52:30.648 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:52:30.648 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:52:30.688 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:30.698 -07 000000415 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:52:30.698 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:30.698 -07 000000476 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:30.698 -07 000000476 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:52:30.698 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 21:52:31.648 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:31.648 -07 000000608 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:52:31.658 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.658 -07 000000476 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:31.678 -07 000000476 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:31.678 -07 000000476 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:52:31.678 -07 000000476 INF: Y Motor: Moved to 63.2246 after 1441 ms (table move)
17-03-17 21:52:31.678 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139309 mm (DAC = 30432)
17-03-17 21:52:31.678 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.688 -07 000000627 INF: FPGA: Recv ZSGSRD 30980
17-03-17 21:52:31.688 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:52:31.688 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.688 -07 000000459 INF: FPGA: Recv ZSGSRD 30970
17-03-17 21:52:31.698 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:31.698 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.698 -07 000000626 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:52:31.708 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.708 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.708 -07 000000415 INF: FPGA: Recv ZSGSRD 30981
17-03-17 21:52:31.718 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.718 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.718 -07 000000476 INF: FPGA: Recv ZSGSRD 30984
17-03-17 21:52:31.728 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.728 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.728 -07 000000475 INF: FPGA: Recv ZSGSRD 30979
17-03-17 21:52:31.738 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.738 -07 000000458 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:52:31.748 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.748 -07 000000627 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:52:31.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.758 -07 000000459 INF: FPGA: Recv ZSGSRD 30968
17-03-17 21:52:31.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:31.768 -07 000000569 INF: FPGA: Recv ZSGSRD 30970
17-03-17 21:52:31.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.778 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:31.778 -07 000000475 INF: FPGA: Recv ZPIEZORD 26998
17-03-17 21:52:31.788 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:31.788 -07 000000012 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -8.8 V.
17-03-17 21:52:31.788 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30973 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30968 (-138.5 uncal um), Max = 30984 (-138.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:52:31.788 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 9, negNoise = 7
17-03-17 21:52:31.788 -07 000000012 INF: Z Motor: After move to -0.139309, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:31.788 -07 000000012 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:52:31.788 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:31.838 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:52:31.838 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:31.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:31.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:31.838 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:31.838 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:31.838 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:31.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:31.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:31.838 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:31.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:31.848 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:31.858 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:52:31.858 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:52:31.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:31.908 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:31.918 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:32.108 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:32.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:32.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:32.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 21:52:32.148 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:32.148 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:32.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:52:32.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:52:32.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:32.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:52:32.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:52:32.248 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:32.248 -07 000000475 INF: Autofocus start
17-03-17 21:52:32.248 -07 000000475 INF: MeasureProfile start
17-03-17 21:52:32.248 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:32.258 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:32.258 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:32.258 -07 000000475 INF: MeasureProfile done
17-03-17 21:52:32.258 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:52:32.258 -07 000000475 INF: Autofocus finished
17-03-17 21:52:32.328 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.031682,
17-03-17 21:52:32.458 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:32.458 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:32.458 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139313323102181. ----------
17-03-17 21:52:32.458 -07 000000610 INF: Cycle	56	Tile	5	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:32.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28939, sync = True, waitForSettling = True)
17-03-17 21:52:32.468 -07 000000610 INF: Z Motor: Moving to -0.132474 mm, started at -0.139313 mm, distance = 6.84 um
17-03-17 21:52:32.468 -07 000000610 INF: FPGA: Xmit ZDACW 28939\n [Z Motor]
17-03-17 21:52:32.468 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:52:32.478 -07 000000610 INF: FPGA: 'ZDACW 28939' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:32.478 -07 000000576 INF: FPGA: Recv ZDACR 28939
17-03-17 21:52:32.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:32.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.648 -07 000000459 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:52:32.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:32.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.668 -07 000000476 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:52:32.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.678 -07 000000431 INF: FPGA: Recv ZSGSRD 29911
17-03-17 21:52:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.698 -07 000000424 INF: FPGA: Recv ZSGSRD 29903
17-03-17 21:52:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.708 -07 000000475 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:52:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.728 -07 000000608 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:52:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.748 -07 000000576 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:52:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.758 -07 000000415 INF: FPGA: Recv ZSGSRD 29916
17-03-17 21:52:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.768 -07 000000458 INF: FPGA: Recv ZSGSRD 29911
17-03-17 21:52:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:32.778 -07 000000476 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:52:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:32.788 -07 000000438 INF: FPGA: Recv ZPIEZORD 25609
17-03-17 21:52:32.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:32.798 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.5 V.
17-03-17 21:52:32.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29911 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29911 (-131.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29903 (-131.6 uncal um), Max = 29918 (-131.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:52:32.798 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29911, posNoise = 7, negNoise = 8
17-03-17 21:52:32.798 -07 000000610 INF: Z Motor: After move to -0.132474, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:32.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 21:52:32.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:32.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:32.798 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:32.798 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:32.798 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:32.798 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:32.798 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:32.798 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:32.798 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:32.798 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:32.798 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:32.798 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:52:32.798 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:32.798 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:32.808 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:32.808 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:32.808 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:52:32.808 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:52:32.818 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:52:32.818 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:52:32.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29116 150\n [Camera]
17-03-17 21:52:33.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:33.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:33.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:33.458 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:33.458 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:33.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:52:33.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:33.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:33.468 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:33.468 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:33.468 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:52:33.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29116 825
17-03-17 21:52:33.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:33.838 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:52:33.838 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:52:33.838 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:33.838 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:33.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:52:33.838 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:52:33.838 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:33.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:52:33.848 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:52:33.858 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:52:34.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:34.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:34.018 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:34.018 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:34.018 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:52:34.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:34.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:34.018 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:34.018 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:34.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:52:34.208 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:34.208 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:34.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29116 150' command took 2 ms to send, 1383 ms to get response, and 1389 ms overall
17-03-17 21:52:34.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:34.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132477961383347. ------
17-03-17 21:52:34.208 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:34.208 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13888 mm
17-03-17 21:52:34.208 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:34.218 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:52:34.218 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 21:52:34.218 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:34.218 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30339, sync = True, waitForSettling = False)
17-03-17 21:52:34.218 -07 000000476 INF: Z Motor: Moving to -0.138883 mm, started at -0.132478 mm, distance = -6.41 um
17-03-17 21:52:34.218 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:34.218 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 21:52:34.218 -07 000000438 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:52:34.228 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:34.228 -07 000000382 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:34.228 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:34.228 -07 000000382 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:52:34.228 -07 000000476 INF: FPGA: Xmit ZDACW 30339\n [Z Motor]
17-03-17 21:52:34.228 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:52:34.238 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:34.238 -07 000000476 INF: FPGA: 'ZDACW 30339' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:52:34.248 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:34.258 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:34.258 -07 000000459 INF: FPGA: Recv ZDACR 30339
17-03-17 21:52:34.268 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:34.268 -07 000000476 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:52:34.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:52:34.418 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:52:34.418 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:34.428 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:52:34.428 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:52:34.428 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:34.428 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:34.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:52:34.428 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:52:34.438 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:52:34.438 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:34.438 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 21:52:34.618 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:52:34.618 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 21:52:34.658 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:34.668 -07 000000012 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:52:34.668 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:34.668 -07 000000382 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:34.668 -07 000000382 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 21:52:34.668 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 21:52:35.618 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:35.618 -07 000000547 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:52:35.628 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:35.628 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:35.648 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:35.648 -07 000000382 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:52:35.648 -07 000000382 INF: Y Motor: Moved to 64.0571 after 1429 ms (table move)
17-03-17 21:52:35.648 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138883 mm (DAC = 30339)
17-03-17 21:52:35.648 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.648 -07 000000415 INF: FPGA: Recv ZSGSRD 30905
17-03-17 21:52:35.658 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:35.658 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.658 -07 000000547 INF: FPGA: Recv ZSGSRD 30905
17-03-17 21:52:35.668 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.668 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.668 -07 000000459 INF: FPGA: Recv ZSGSRD 30917
17-03-17 21:52:35.678 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.678 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.678 -07 000000458 INF: FPGA: Recv ZSGSRD 30911
17-03-17 21:52:35.688 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.688 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.688 -07 000000012 INF: FPGA: Recv ZSGSRD 30912
17-03-17 21:52:35.698 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.698 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30912
17-03-17 21:52:35.708 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.708 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.708 -07 000000429 INF: FPGA: Recv ZSGSRD 30904
17-03-17 21:52:35.718 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.718 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30910
17-03-17 21:52:35.728 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.728 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.728 -07 000000608 INF: FPGA: Recv ZSGSRD 30902
17-03-17 21:52:35.738 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.738 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:35.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:52:35.748 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.748 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:35.748 -07 000000627 INF: FPGA: Recv ZPIEZORD 26935
17-03-17 21:52:35.758 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:35.758 -07 000000431 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -8.8 V.
17-03-17 21:52:35.758 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30909 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30910 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30902 (-138.0 uncal um), Max = 30917 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:52:35.758 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30909, posNoise = 8, negNoise = 7
17-03-17 21:52:35.758 -07 000000431 INF: Z Motor: After move to -0.138883, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:35.758 -07 000000431 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:52:35.758 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:35.808 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:52:35.808 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:35.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:35.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:35.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:35.808 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:35.808 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:35.808 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:35.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:35.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:35.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:35.818 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:35.828 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:52:35.828 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:52:35.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:35.868 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:36.068 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:36.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:36.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:36.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start.
17-03-17 21:52:36.108 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:36.108 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:36.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:52:36.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:52:36.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:36.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:52:36.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:52:36.208 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:36.208 -07 000000569 INF: Autofocus start
17-03-17 21:52:36.208 -07 000000569 INF: MeasureProfile start
17-03-17 21:52:36.208 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:36.218 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:36.218 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:36.218 -07 000000569 INF: MeasureProfile done
17-03-17 21:52:36.218 -07 000000569 INF: X=13  Z correction [um]=0.03858674
17-03-17 21:52:36.218 -07 000000569 INF: Autofocus finished
17-03-17 21:52:36.418 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:36.418 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:52:36.418 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138889325100824. ----------
17-03-17 21:52:36.418 -07 000000610 INF: Cycle	56	Tile	6	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:36.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28860, sync = True, waitForSettling = True)
17-03-17 21:52:36.428 -07 000000610 INF: Z Motor: Moving to -0.132113 mm, started at -0.138889 mm, distance = 6.78 um
17-03-17 21:52:36.428 -07 000000610 INF: FPGA: Xmit ZDACW 28860\n [Z Motor]
17-03-17 21:52:36.428 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:52:36.438 -07 000000610 INF: FPGA: 'ZDACW 28860' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:36.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:36.438 -07 000000475 INF: FPGA: Recv ZDACR 28860
17-03-17 21:52:36.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29859
17-03-17 21:52:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.608 -07 000000438 INF: FPGA: Recv ZSGSRD 29854
17-03-17 21:52:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29854
17-03-17 21:52:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29855
17-03-17 21:52:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.638 -07 000000431 INF: FPGA: Recv ZSGSRD 29854
17-03-17 21:52:36.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.648 -07 000000476 INF: FPGA: Recv ZSGSRD 29859
17-03-17 21:52:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.658 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-17 21:52:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.668 -07 000000415 INF: FPGA: Recv ZSGSRD 29863
17-03-17 21:52:36.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.678 -07 000000626 INF: FPGA: Recv ZSGSRD 29856
17-03-17 21:52:36.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:36.688 -07 000000382 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:52:36.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:36.698 -07 000000459 INF: FPGA: Recv ZPIEZORD 25562
17-03-17 21:52:36.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:36.708 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.4 V.
17-03-17 21:52:36.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29856 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29854 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29850 (-131.3 uncal um), Max = 29863 (-131.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:36.708 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29856, posNoise = 7, negNoise = 6
17-03-17 21:52:36.708 -07 000000610 INF: Z Motor: After move to -0.132113, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:36.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:52:36.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:36.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:36.708 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:36.708 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:36.708 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:36.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:36.708 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:36.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:36.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:36.708 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:36.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:36.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:36.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:36.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:36.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:36.718 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:36.718 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:52:36.718 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:52:36.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:52:36.718 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:52:36.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 29036 150\n [Camera]
17-03-17 21:52:36.918 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:36.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:36.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 21:52:37.368 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:37.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:37.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:37.368 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:37.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:52:37.368 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:37.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:37.368 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:37.368 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:37.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 21:52:37.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29036 825
17-03-17 21:52:37.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.037119,
17-03-17 21:52:37.708 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:37.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:52:37.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:52:37.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:37.748 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:37.758 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:52:37.758 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:52:37.758 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:37.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:52:37.758 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:37.758 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:52:37.918 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:37.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:37.918 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:38.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:38.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:38.058 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:38.058 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:38.058 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 21:52:38.058 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:38.058 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:52:38.108 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:52:38.118 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:38.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 29036 150' command took 2 ms to send, 1380 ms to get response, and 1387 ms overall
17-03-17 21:52:38.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:38.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.13212462971555. ------
17-03-17 21:52:38.118 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:38.118 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13868 mm
17-03-17 21:52:38.118 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:38.128 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30294, sync = True, waitForSettling = False)
17-03-17 21:52:38.128 -07 000000476 INF: Z Motor: Moving to -0.138677 mm, started at -0.132125 mm, distance = -6.55 um
17-03-17 21:52:38.128 -07 000000476 INF: FPGA: Xmit ZDACW 30294\n [Z Motor]
17-03-17 21:52:38.128 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:52:38.128 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:52:38.128 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:38.128 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 21:52:38.128 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:52:38.138 -07 000000476 INF: FPGA: 'ZDACW 30294' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:38.138 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:38.138 -07 000000459 INF: FPGA: Recv ZDACR 30294
17-03-17 21:52:38.148 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:38.148 -07 000000476 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:52:38.148 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:38.148 -07 000000431 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:52:38.158 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:52:38.158 -07 000000576 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:38.158 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:38.158 -07 000000576 INF: Y Motor: Moving 1337 steps-12
17-03-17 21:52:38.158 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:38.168 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:38.358 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:38.358 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 226 ms overall
17-03-17 21:52:38.458 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:52:38.458 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:52:38.458 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:38.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:52:38.458 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:52:38.458 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:38.458 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:38.458 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:38.458 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 21:52:38.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:52:38.538 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:52:38.538 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:52:38.578 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:38.578 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:52:38.588 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:38.588 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:38.588 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:52:38.588 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec
17-03-17 21:52:39.538 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:39.538 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:52:39.548 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:39.548 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:39.568 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:39.568 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:39.568 -07 000000576 INF: Y Motor: Moved to 64.8789 after 1443 ms (table move)
17-03-17 21:52:39.568 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138677 mm (DAC = 30294)
17-03-17 21:52:39.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.578 -07 000000475 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:52:39.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:52:39.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.578 -07 000000424 INF: FPGA: Recv ZSGSRD 30873
17-03-17 21:52:39.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:39.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.588 -07 000000476 INF: FPGA: Recv ZSGSRD 30877
17-03-17 21:52:39.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.598 -07 000000475 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:52:39.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.608 -07 000000424 INF: FPGA: Recv ZSGSRD 30876
17-03-17 21:52:39.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.618 -07 000000476 INF: FPGA: Recv ZSGSRD 30873
17-03-17 21:52:39.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.628 -07 000000438 INF: FPGA: Recv ZSGSRD 30880
17-03-17 21:52:39.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.638 -07 000000512 INF: FPGA: Recv ZSGSRD 30871
17-03-17 21:52:39.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.648 -07 000000475 INF: FPGA: Recv ZSGSRD 30870
17-03-17 21:52:39.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:39.658 -07 000000501 INF: FPGA: Recv ZSGSRD 30872
17-03-17 21:52:39.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.668 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:39.668 -07 000000012 INF: FPGA: Recv ZPIEZORD 26897
17-03-17 21:52:39.678 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:39.678 -07 000000415 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -8.8 V.
17-03-17 21:52:39.678 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30876 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30874 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30870 (-137.8 uncal um), Max = 30885 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:39.678 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30876, posNoise = 9, negNoise = 6
17-03-17 21:52:39.678 -07 000000415 INF: Z Motor: After move to -0.138677, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:39.678 -07 000000415 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:52:39.678 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:39.728 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:52:39.728 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:39.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:39.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:39.728 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:39.728 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:39.728 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:39.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:39.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:39.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:39.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:39.738 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:39.748 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:52:39.748 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:52:39.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:39.798 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:39.998 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:39.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:39.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:39.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:52:40.038 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:40.038 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:40.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:52:40.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:52:40.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:40.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:40.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:52:40.138 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:40.138 -07 000000438 INF: Autofocus start
17-03-17 21:52:40.138 -07 000000438 INF: MeasureProfile start
17-03-17 21:52:40.138 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:40.148 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:40.148 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:40.158 -07 000000438 INF: MeasureProfile done
17-03-17 21:52:40.158 -07 000000438 INF: X=-39  Z correction [um]=-0.1932479
17-03-17 21:52:40.158 -07 000000438 INF: Autofocus finished
17-03-17 21:52:40.348 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:40.348 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 21:52:40.348 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138677326100146. ----------
17-03-17 21:52:40.348 -07 000000610 INF: Cycle	56	Tile	7	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:40.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-17 21:52:40.358 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138677 mm, distance = 7.00 um
17-03-17 21:52:40.358 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-17 21:52:40.358 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:52:40.368 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:40.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:40.368 -07 000000424 INF: FPGA: Recv ZDACR 28764
17-03-17 21:52:40.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:40.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.528 -07 000000576 INF: FPGA: Recv ZSGSRD 29781
17-03-17 21:52:40.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:40.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29783
17-03-17 21:52:40.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.548 -07 000000382 INF: FPGA: Recv ZSGSRD 29788
17-03-17 21:52:40.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.558 -07 000000480 INF: FPGA: Recv ZSGSRD 29781
17-03-17 21:52:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.568 -07 000000501 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:52:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.578 -07 000000569 INF: FPGA: Recv ZSGSRD 29784
17-03-17 21:52:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.588 -07 000000459 INF: FPGA: Recv ZSGSRD 29780
17-03-17 21:52:40.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.598 -07 000000424 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:52:40.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.608 -07 000000627 INF: FPGA: Recv ZSGSRD 29782
17-03-17 21:52:40.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:40.618 -07 000000458 INF: FPGA: Recv ZSGSRD 29782
17-03-17 21:52:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:40.628 -07 000000382 INF: FPGA: Recv ZPIEZORD 25502
17-03-17 21:52:40.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:40.638 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.4 V.
17-03-17 21:52:40.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29784 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29795 (-130.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:52:40.638 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29784, posNoise = 11, negNoise = 4
17-03-17 21:52:40.638 -07 000000610 INF: Z Motor: After move to -0.131673, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:40.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:52:40.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:40.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:40.638 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:40.638 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:40.638 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:40.638 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:40.638 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:40.638 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:40.638 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:52:40.638 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:40.638 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:40.638 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:40.638 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:52:40.638 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:40.648 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:40.648 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:40.648 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:52:40.648 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:52:40.648 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:52:40.648 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:52:40.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28941 150\n [Camera]
17-03-17 21:52:40.858 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:41.298 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:41.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:41.298 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:41.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:41.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:41.298 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:41.298 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:41.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:52:41.308 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:41.308 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:52:41.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 825
17-03-17 21:52:41.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:41.678 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:52:41.678 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:52:41.678 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:41.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:52:41.678 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:52:41.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:41.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:41.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:52:41.678 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:41.688 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:52:41.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:41.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:41.848 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:41.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:41.978 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:41.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:41.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:41.978 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:41.978 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:41.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:52:41.978 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:41.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:52:42.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:52:42.038 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:42.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28941 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-17 21:52:42.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:42.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131662086441343. ------
17-03-17 21:52:42.048 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:42.048 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13842 mm
17-03-17 21:52:42.048 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:42.048 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:52:42.048 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 21:52:42.048 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:42.048 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30238, sync = True, waitForSettling = False)
17-03-17 21:52:42.048 -07 000000431 INF: Z Motor: Moving to -0.138421 mm, started at -0.131662 mm, distance = -6.76 um
17-03-17 21:52:42.058 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:42.058 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:42.058 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:52:42.068 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:52:42.068 -07 000000424 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:42.068 -07 000000431 INF: FPGA: Xmit ZDACW 30238\n [Z Motor]
17-03-17 21:52:42.068 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:52:42.068 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:42.068 -07 000000424 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:52:42.078 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:42.078 -07 000000431 INF: FPGA: 'ZDACW 30238' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:52:42.088 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:42.098 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:42.098 -07 000000569 INF: FPGA: Recv ZDACR 30238
17-03-17 21:52:42.108 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:42.108 -07 000000431 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:52:42.278 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:42.278 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:52:42.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:52:42.368 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:52:42.368 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:42.378 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:42.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:52:42.378 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:52:42.378 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:42.378 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:52:42.378 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:42.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 21:52:42.458 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:52:42.458 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 21:52:42.498 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:42.498 -07 000000512 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:52:42.508 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:42.508 -07 000000424 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:42.508 -07 000000424 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:52:42.508 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-17 21:52:43.058 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.023489,
17-03-17 21:52:43.458 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:43.458 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:52:43.468 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.468 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:43.488 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:43.488 -07 000000424 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:52:43.488 -07 000000424 INF: Y Motor: Moved to 65.7144 after 1439 ms (table move)
17-03-17 21:52:43.498 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138421 mm (DAC = 30238)
17-03-17 21:52:43.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.498 -07 000000608 INF: FPGA: Recv ZSGSRD 30834
17-03-17 21:52:43.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:43.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.508 -07 000000012 INF: FPGA: Recv ZSGSRD 30835
17-03-17 21:52:43.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30826
17-03-17 21:52:43.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30828
17-03-17 21:52:43.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.538 -07 000000424 INF: FPGA: Recv ZSGSRD 30843
17-03-17 21:52:43.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.548 -07 000000475 INF: FPGA: Recv ZSGSRD 30835
17-03-17 21:52:43.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.558 -07 000000429 INF: FPGA: Recv ZSGSRD 30827
17-03-17 21:52:43.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30836
17-03-17 21:52:43.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.578 -07 000000458 INF: FPGA: Recv ZSGSRD 30835
17-03-17 21:52:43.588 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.588 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:43.588 -07 000000424 INF: FPGA: Recv ZSGSRD 30837
17-03-17 21:52:43.598 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.598 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:43.598 -07 000000475 INF: FPGA: Recv ZPIEZORD 26885
17-03-17 21:52:43.608 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:43.608 -07 000000501 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -8.7 V.
17-03-17 21:52:43.608 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30834 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30835 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30826 (-137.6 uncal um), Max = 30843 (-137.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:52:43.608 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30834, posNoise = 9, negNoise = 8
17-03-17 21:52:43.608 -07 000000501 INF: Z Motor: After move to -0.138421, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:43.608 -07 000000501 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:52:43.608 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:43.658 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:52:43.658 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:43.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:43.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:43.658 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:43.658 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:43.658 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:43.658 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:43.658 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:43.658 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:43.668 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:43.668 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:43.678 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:52:43.678 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:52:43.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:43.718 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:43.918 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:43.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:43.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:43.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:52:43.958 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:43.958 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:43.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:52:44.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:52:44.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:44.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:44.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:52:44.058 -07 000000012 INF: Autofocus start
17-03-17 21:52:44.058 -07 000000012 INF: MeasureProfile start
17-03-17 21:52:44.058 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:44.058 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:44.068 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:44.068 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:44.068 -07 000000012 INF: MeasureProfile done
17-03-17 21:52:44.068 -07 000000012 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 21:52:44.068 -07 000000012 INF: Autofocus finished
17-03-17 21:52:44.268 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:44.268 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:44.268 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138407509190192. ----------
17-03-17 21:52:44.268 -07 000000610 INF: Cycle	56	Tile	8	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:44.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28699, sync = True, waitForSettling = True)
17-03-17 21:52:44.278 -07 000000610 INF: Z Motor: Moving to -0.131376 mm, started at -0.138408 mm, distance = 7.03 um
17-03-17 21:52:44.278 -07 000000610 INF: FPGA: Xmit ZDACW 28699\n [Z Motor]
17-03-17 21:52:44.278 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:52:44.288 -07 000000610 INF: FPGA: 'ZDACW 28699' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:44.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:44.288 -07 000000576 INF: FPGA: Recv ZDACR 28699
17-03-17 21:52:44.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.448 -07 000000415 INF: FPGA: Recv ZSGSRD 29740
17-03-17 21:52:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.458 -07 000000512 INF: FPGA: Recv ZSGSRD 29740
17-03-17 21:52:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.468 -07 000000429 INF: FPGA: Recv ZSGSRD 29741
17-03-17 21:52:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.478 -07 000000458 INF: FPGA: Recv ZSGSRD 29735
17-03-17 21:52:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29743
17-03-17 21:52:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.498 -07 000000424 INF: FPGA: Recv ZSGSRD 29738
17-03-17 21:52:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29733
17-03-17 21:52:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29745
17-03-17 21:52:44.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.528 -07 000000475 INF: FPGA: Recv ZSGSRD 29736
17-03-17 21:52:44.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:44.538 -07 000000480 INF: FPGA: Recv ZSGSRD 29738
17-03-17 21:52:44.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:44.548 -07 000000569 INF: FPGA: Recv ZPIEZORD 25479
17-03-17 21:52:44.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:44.558 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.4 V.
17-03-17 21:52:44.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29739 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29739 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29733 (-130.6 uncal um), Max = 29745 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:44.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29739, posNoise = 6, negNoise = 6
17-03-17 21:52:44.558 -07 000000610 INF: Z Motor: After move to -0.131376, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:44.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:44.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:44.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:44.558 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:44.558 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:44.558 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:44.558 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:44.558 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:44.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:44.558 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:44.558 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:44.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:44.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:44.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:52:44.568 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:44.568 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:44.568 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:44.568 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:52:44.568 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:52:44.568 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:52:44.568 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:52:44.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28875 150\n [Camera]
17-03-17 21:52:44.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:45.218 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:45.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:45.218 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:45.218 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:45.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:52:45.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:45.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:45.218 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:45.218 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:45.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) start.
17-03-17 21:52:45.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28875 825
17-03-17 21:52:45.558 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:45.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:52:45.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:52:45.598 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:45.598 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:45.598 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:52:45.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:52:45.598 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:52:45.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:45.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:45.608 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:52:45.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:45.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:45.768 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:45.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:45.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:45.888 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:45.888 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:45.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:52:45.888 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:45.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:52:45.958 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:52:45.958 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:45.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28875 150' command took 2 ms to send, 1379 ms to get response, and 1387 ms overall
17-03-17 21:52:45.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:45.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131372996894964. ------
17-03-17 21:52:45.968 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:45.968 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13770 mm
17-03-17 21:52:45.968 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:45.968 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:52:45.968 -07 000000476 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:52:45.968 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30080, sync = True, waitForSettling = False)
17-03-17 21:52:45.968 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:45.968 -07 000000608 INF: Z Motor: Moving to -0.137697 mm, started at -0.131373 mm, distance = -6.32 um
17-03-17 21:52:45.978 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:45.978 -07 000000608 INF: FPGA: Xmit ZDACW 30080\n [Z Motor]
17-03-17 21:52:45.978 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:52:45.988 -07 000000608 INF: FPGA: 'ZDACW 30080' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:52:45.988 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:45.988 -07 000000459 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:52:45.998 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:45.998 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:52:45.998 -07 000000476 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:45.998 -07 000000476 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:45.998 -07 000000476 INF: Y Motor: Moving 1341 steps-18
17-03-17 21:52:46.008 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:46.008 -07 000000626 INF: FPGA: Recv ZDACR 30080
17-03-17 21:52:46.018 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:46.018 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:52:46.018 -07 000000608 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:52:46.198 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:46.198 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:52:46.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:52:46.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:52:46.278 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:46.278 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:52:46.278 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:52:46.278 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:46.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:46.278 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:46.278 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:52:46.288 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:52:46.388 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:52:46.388 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:52:46.428 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:46.428 -07 000000431 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:52:46.438 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:46.438 -07 000000476 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:46.438 -07 000000476 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:52:46.438 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 21:52:46.918 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:46.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:47.388 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:47.388 -07 000000459 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:52:47.398 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:47.398 -07 000000476 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:47.418 -07 000000476 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:47.418 -07 000000476 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:47.418 -07 000000476 INF: Y Motor: Moved to 66.5391 after 1449 ms (table move)
17-03-17 21:52:47.418 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137697 mm (DAC = 30080)
17-03-17 21:52:47.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.428 -07 000000626 INF: FPGA: Recv ZSGSRD 30730
17-03-17 21:52:47.428 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:52:47.428 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.428 -07 000000475 INF: FPGA: Recv ZSGSRD 30732
17-03-17 21:52:47.438 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:47.438 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.438 -07 000000415 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:52:47.448 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.448 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.448 -07 000000012 INF: FPGA: Recv ZSGSRD 30731
17-03-17 21:52:47.458 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.458 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.458 -07 000000476 INF: FPGA: Recv ZSGSRD 30732
17-03-17 21:52:47.468 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.468 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.468 -07 000000576 INF: FPGA: Recv ZSGSRD 30724
17-03-17 21:52:47.478 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.478 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.478 -07 000000458 INF: FPGA: Recv ZSGSRD 30729
17-03-17 21:52:47.488 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.488 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.488 -07 000000501 INF: FPGA: Recv ZSGSRD 30721
17-03-17 21:52:47.498 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.498 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.498 -07 000000480 INF: FPGA: Recv ZSGSRD 30723
17-03-17 21:52:47.508 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.508 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:47.508 -07 000000627 INF: FPGA: Recv ZSGSRD 30725
17-03-17 21:52:47.518 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.518 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:47.518 -07 000000626 INF: FPGA: Recv ZPIEZORD 26776
17-03-17 21:52:47.528 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:47.528 -07 000000547 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -8.7 V.
17-03-17 21:52:47.528 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30727 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30727 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30732 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:47.528 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30727, posNoise = 5, negNoise = 6
17-03-17 21:52:47.528 -07 000000547 INF: Z Motor: After move to -0.137697, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:47.528 -07 000000547 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:52:47.528 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:47.578 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:52:47.578 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:47.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:47.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:47.578 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:47.578 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:47.578 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:47.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:47.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:47.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:47.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:47.588 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:47.598 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:52:47.598 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:52:47.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:47.648 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:47.848 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:47.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:47.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:47.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:52:47.888 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:47.888 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:47.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:52:47.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:52:47.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:47.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:47.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:52:47.988 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:47.988 -07 000000626 INF: Autofocus start
17-03-17 21:52:47.988 -07 000000626 INF: MeasureProfile start
17-03-17 21:52:47.988 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:47.998 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:52:47.998 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:47.998 -07 000000626 INF: MeasureProfile done
17-03-17 21:52:47.998 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:52:47.998 -07 000000626 INF: Autofocus finished
17-03-17 21:52:48.198 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:48.198 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:48.208 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137720118491024. ----------
17-03-17 21:52:48.208 -07 000000610 INF: Cycle	56	Tile	9	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:48.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28588, sync = True, waitForSettling = True)
17-03-17 21:52:48.208 -07 000000610 INF: Z Motor: Moving to -0.130867 mm, started at -0.137720 mm, distance = 6.85 um
17-03-17 21:52:48.208 -07 000000610 INF: FPGA: Xmit ZDACW 28588\n [Z Motor]
17-03-17 21:52:48.218 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:52:48.218 -07 000000610 INF: FPGA: 'ZDACW 28588' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:52:48.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:48.218 -07 000000501 INF: FPGA: Recv ZDACR 28588
17-03-17 21:52:48.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:48.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.378 -07 000000480 INF: FPGA: Recv ZSGSRD 29658
17-03-17 21:52:48.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:48.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.388 -07 000000608 INF: FPGA: Recv ZSGSRD 29658
17-03-17 21:52:48.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.398 -07 000000569 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:52:48.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.418 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.008536,
17-03-17 21:52:48.418 -07 000000608 INF: FPGA: Recv ZSGSRD 29656
17-03-17 21:52:48.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:48.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.438 -07 000000382 INF: FPGA: Recv ZSGSRD 29657
17-03-17 21:52:48.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:48.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.468 -07 000000576 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:52:48.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:48.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29662
17-03-17 21:52:48.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:52:48.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.508 -07 000000608 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:52:48.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.518 -07 000000569 INF: FPGA: Recv ZSGSRD 29660
17-03-17 21:52:48.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:48.528 -07 000000458 INF: FPGA: Recv ZSGSRD 29658
17-03-17 21:52:48.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:48.538 -07 000000501 INF: FPGA: Recv ZPIEZORD 25367
17-03-17 21:52:48.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:48.548 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.4 V.
17-03-17 21:52:48.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29661 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29659 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29656 (-130.1 uncal um), Max = 29667 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:52:48.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29661, posNoise = 6, negNoise = 5
17-03-17 21:52:48.548 -07 000000610 INF: Z Motor: After move to -0.130867, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:48.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 333 ms)
17-03-17 21:52:48.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:48.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:48.548 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:48.548 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:48.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:48.548 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:48.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:48.548 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:48.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:52:48.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:48.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:48.548 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:48.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:48.558 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:48.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:52:48.558 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:48.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:52:48.568 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:52:48.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:52:48.568 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:52:48.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28764 150\n [Camera]
17-03-17 21:52:48.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:49.208 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:49.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:49.208 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:49.208 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:49.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:52:49.208 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:49.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:49.208 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:49.208 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:49.208 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) start.
17-03-17 21:52:49.398 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28764 825
17-03-17 21:52:49.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:49.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2334294336, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:52:49.588 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:52:49.588 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:49.698 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 489 ms.
17-03-17 21:52:49.698 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 489 ms.
17-03-17 21:52:49.698 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:49.708 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 113 ms.
17-03-17 21:52:49.708 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:49.708 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 21:52:49.708 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 21:52:49.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:49.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:49.768 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:49.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:49.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:49.768 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:49.768 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:49.768 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:52:49.778 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:49.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:52:49.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:52:49.958 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:49.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28764 150' command took 2 ms to send, 1382 ms to get response, and 1386 ms overall
17-03-17 21:52:49.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:49.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130871908347907. ------
17-03-17 21:52:49.958 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:49.958 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13764 mm
17-03-17 21:52:49.958 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:49.968 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:49.968 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:52:49.968 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:49.968 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:52:49.968 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 21:52:49.968 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30066, sync = True, waitForSettling = False)
17-03-17 21:52:49.968 -07 000000569 INF: Z Motor: Moving to -0.137633 mm, started at -0.130872 mm, distance = -6.76 um
17-03-17 21:52:49.978 -07 000000569 INF: FPGA: Xmit ZDACW 30066\n [Z Motor]
17-03-17 21:52:49.978 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:52:49.988 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:49.988 -07 000000569 INF: FPGA: 'ZDACW 30066' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:52:49.988 -07 000000415 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:52:49.998 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:52:49.998 -07 000000626 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:49.998 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:49.998 -07 000000424 INF: FPGA: Recv ZDACR 30066
17-03-17 21:52:49.998 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:49.998 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:52:50.008 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:50.008 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:50.008 -07 000000569 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:52:50.158 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:52:50.158 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:52:50.158 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:50.158 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:52:50.158 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:52:50.158 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:50.158 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:50.158 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:50.158 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:52:50.168 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:52:50.168 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:50.168 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:52:50.378 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:52:50.378 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:52:50.418 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:50.418 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:52:50.428 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:50.428 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:50.428 -07 000000626 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:52:50.428 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.197 mm/sec
17-03-17 21:52:51.378 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:51.378 -07 000000627 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:52:51.388 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:51.388 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:51.408 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:51.408 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:51.408 -07 000000626 INF: Y Motor: Moved to 67.3721 after 1440 ms (table move)
17-03-17 21:52:51.408 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137633 mm (DAC = 30066)
17-03-17 21:52:51.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.418 -07 000000476 INF: FPGA: Recv ZSGSRD 30721
17-03-17 21:52:51.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:52:51.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.418 -07 000000458 INF: FPGA: Recv ZSGSRD 30711
17-03-17 21:52:51.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.428 -07 000000626 INF: FPGA: Recv ZSGSRD 30721
17-03-17 21:52:51.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.438 -07 000000501 INF: FPGA: Recv ZSGSRD 30711
17-03-17 21:52:51.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.448 -07 000000012 INF: FPGA: Recv ZSGSRD 30715
17-03-17 21:52:51.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.458 -07 000000424 INF: FPGA: Recv ZSGSRD 30713
17-03-17 21:52:51.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.468 -07 000000547 INF: FPGA: Recv ZSGSRD 30714
17-03-17 21:52:51.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.478 -07 000000480 INF: FPGA: Recv ZSGSRD 30716
17-03-17 21:52:51.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.488 -07 000000476 INF: FPGA: Recv ZSGSRD 30707
17-03-17 21:52:51.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:51.498 -07 000000569 INF: FPGA: Recv ZSGSRD 30724
17-03-17 21:52:51.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.508 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:51.508 -07 000000608 INF: FPGA: Recv ZPIEZORD 26773
17-03-17 21:52:51.518 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:51.518 -07 000000382 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -8.7 V.
17-03-17 21:52:51.518 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30715 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30714 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30707 (-136.8 uncal um), Max = 30724 (-136.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:52:51.518 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30715, posNoise = 9, negNoise = 8
17-03-17 21:52:51.518 -07 000000382 INF: Z Motor: After move to -0.137633, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:51.518 -07 000000382 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:52:51.518 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:51.568 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:52:51.568 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:51.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:51.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:51.568 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:51.568 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:51.568 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:51.568 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:51.568 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:51.568 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:51.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:51.578 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:51.588 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:52:51.588 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:52:51.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:51.628 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:51.828 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:51.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:51.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:51.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:52:51.868 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:51.868 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:51.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:52:51.918 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:51.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:52:51.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:51.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:51.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:52:51.968 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:52.068 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:52.068 -07 000000424 INF: Autofocus start
17-03-17 21:52:52.068 -07 000000424 INF: MeasureProfile start
17-03-17 21:52:52.068 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:52.078 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:52:52.078 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:52.078 -07 000000424 INF: MeasureProfile done
17-03-17 21:52:52.078 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:52:52.078 -07 000000424 INF: Autofocus finished
17-03-17 21:52:52.278 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:52.278 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:52.278 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137643027945323. ----------
17-03-17 21:52:52.278 -07 000000610 INF: Cycle	56	Tile	10	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:52.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28574, sync = True, waitForSettling = True)
17-03-17 21:52:52.288 -07 000000610 INF: Z Motor: Moving to -0.130803 mm, started at -0.137643 mm, distance = 6.84 um
17-03-17 21:52:52.288 -07 000000610 INF: FPGA: Xmit ZDACW 28574\n [Z Motor]
17-03-17 21:52:52.288 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:52:52.298 -07 000000610 INF: FPGA: 'ZDACW 28574' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:52:52.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:52.298 -07 000000424 INF: FPGA: Recv ZDACR 28574
17-03-17 21:52:52.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.458 -07 000000576 INF: FPGA: Recv ZSGSRD 29655
17-03-17 21:52:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29653
17-03-17 21:52:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.478 -07 000000608 INF: FPGA: Recv ZSGSRD 29653
17-03-17 21:52:52.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.488 -07 000000626 INF: FPGA: Recv ZSGSRD 29646
17-03-17 21:52:52.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29655
17-03-17 21:52:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.508 -07 000000480 INF: FPGA: Recv ZSGSRD 29654
17-03-17 21:52:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29648
17-03-17 21:52:52.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.528 -07 000000382 INF: FPGA: Recv ZSGSRD 29653
17-03-17 21:52:52.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.538 -07 000000547 INF: FPGA: Recv ZSGSRD 29648
17-03-17 21:52:52.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:52.548 -07 000000424 INF: FPGA: Recv ZSGSRD 29655
17-03-17 21:52:52.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:52.558 -07 000000627 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 21:52:52.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:52.568 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.4 V.
17-03-17 21:52:52.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29652 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29653 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29646 (-130.0 uncal um), Max = 29655 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:52:52.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29652, posNoise = 3, negNoise = 6
17-03-17 21:52:52.568 -07 000000610 INF: Z Motor: After move to -0.130803, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:52.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:52:52.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:52.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:52.568 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:52.568 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:52.568 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:52.568 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:52.568 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:52.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:52.568 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:52:52.568 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:52.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:52.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:52.578 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:52.578 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:52.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:52.578 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:52.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:52:52.588 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:52:52.588 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:52:52.588 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:52:52.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28751 150\n [Camera]
17-03-17 21:52:52.788 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:53.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:53.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:53.228 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:53.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:53.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2369716600, 0x0, 391868352) start.
17-03-17 21:52:53.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:53.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:53.238 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:53.238 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:53.238 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:52:53.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28751 829
17-03-17 21:52:53.568 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:52:53.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2369716600, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:52:53.608 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:52:53.618 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:53.618 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:52:53.618 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:52:53.618 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:53.618 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:53.618 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:52:53.618 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:52:53.628 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:52:53.778 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:53.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:53.788 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:53.788 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:53.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:52:53.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:53.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:53.788 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:53.788 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:53.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:52:53.818 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 4.007176,
17-03-17 21:52:53.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:52:53.978 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:53.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28751 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-17 21:52:53.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:53.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130814090438631. ------
17-03-17 21:52:53.978 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:53.978 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13733 mm
17-03-17 21:52:53.978 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:53.988 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:53.988 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:53.988 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:53.988 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:52:53.988 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 21:52:53.988 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30000, sync = True, waitForSettling = False)
17-03-17 21:52:53.988 -07 000000480 INF: Z Motor: Moving to -0.137331 mm, started at -0.130814 mm, distance = -6.52 um
17-03-17 21:52:53.998 -07 000000480 INF: FPGA: Xmit ZDACW 30000\n [Z Motor]
17-03-17 21:52:53.998 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:52:54.008 -07 000000480 INF: FPGA: 'ZDACW 30000' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:52:54.008 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:54.008 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:52:54.018 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:54.018 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:52:54.018 -07 000000512 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:54.018 -07 000000476 INF: FPGA: Recv ZDACR 30000
17-03-17 21:52:54.018 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:54.018 -07 000000512 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:52:54.028 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:54.028 -07 000000480 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 21:52:54.028 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:54.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:52:54.178 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:52:54.178 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:54.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:52:54.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:52:54.178 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:54.178 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:54.178 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:54.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:52:54.188 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:54.188 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:52:54.188 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:52:54.398 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:52:54.398 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:52:54.438 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:54.448 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:52:54.458 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:54.458 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:54.458 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:52:54.458 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-17 21:52:55.408 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:55.408 -07 000000458 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:52:55.418 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:55.418 -07 000000512 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:55.448 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:55.448 -07 000000512 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:52:55.448 -07 000000512 INF: Y Motor: Moved to 68.2056 after 1464 ms (table move)
17-03-17 21:52:55.458 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137331 mm (DAC = 30000)
17-03-17 21:52:55.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.458 -07 000000608 INF: FPGA: Recv ZSGSRD 30671
17-03-17 21:52:55.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:52:55.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.468 -07 000000458 INF: FPGA: Recv ZSGSRD 30671
17-03-17 21:52:55.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.478 -07 000000012 INF: FPGA: Recv ZSGSRD 30668
17-03-17 21:52:55.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.488 -07 000000475 INF: FPGA: Recv ZSGSRD 30660
17-03-17 21:52:55.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.498 -07 000000626 INF: FPGA: Recv ZSGSRD 30669
17-03-17 21:52:55.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.508 -07 000000480 INF: FPGA: Recv ZSGSRD 30662
17-03-17 21:52:55.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30665
17-03-17 21:52:55.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.528 -07 000000512 INF: FPGA: Recv ZSGSRD 30675
17-03-17 21:52:55.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.538 -07 000000431 INF: FPGA: Recv ZSGSRD 30669
17-03-17 21:52:55.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:55.548 -07 000000424 INF: FPGA: Recv ZSGSRD 30676
17-03-17 21:52:55.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.558 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:55.558 -07 000000429 INF: FPGA: Recv ZPIEZORD 26749
17-03-17 21:52:55.568 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:55.568 -07 000000415 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -8.6 V.
17-03-17 21:52:55.568 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30669 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30669 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30676 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:52:55.568 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30669, posNoise = 7, negNoise = 9
17-03-17 21:52:55.568 -07 000000415 INF: Z Motor: After move to -0.137331, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:55.568 -07 000000415 INF: Z Motor: Settle wait time = 1470 ms, measure time = 106 ms (allowed 150 ms), total time = 1576 ms
17-03-17 21:52:55.568 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:55.618 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-17 21:52:55.618 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:55.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:55.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:55.618 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:55.618 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:55.618 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:55.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:55.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:52:55.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:55.628 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:55.628 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:55.628 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:52:55.628 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:52:55.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:55.678 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:55.878 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:55.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:55.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:55.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:52:55.918 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:55.918 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:55.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:52:55.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:52:55.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:55.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:52:55.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:52:56.018 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:56.018 -07 000000627 INF: Autofocus start
17-03-17 21:52:56.018 -07 000000627 INF: MeasureProfile start
17-03-17 21:52:56.018 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:56.028 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:56.028 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:56.028 -07 000000627 INF: MeasureProfile done
17-03-17 21:52:56.028 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:52:56.028 -07 000000627 INF: Autofocus finished
17-03-17 21:52:56.228 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:52:56.228 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:52:56.228 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137347514186802. ----------
17-03-17 21:52:56.238 -07 000000610 INF: Cycle	56	Tile	11	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:52:56.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28524, sync = True, waitForSettling = True)
17-03-17 21:52:56.238 -07 000000610 INF: Z Motor: Moving to -0.130575 mm, started at -0.137348 mm, distance = 6.77 um
17-03-17 21:52:56.238 -07 000000610 INF: FPGA: Xmit ZDACW 28524\n [Z Motor]
17-03-17 21:52:56.238 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:52:56.248 -07 000000610 INF: FPGA: 'ZDACW 28524' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:56.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:56.248 -07 000000012 INF: FPGA: Recv ZDACR 28524
17-03-17 21:52:56.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:52:56.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.408 -07 000000547 INF: FPGA: Recv ZSGSRD 29612
17-03-17 21:52:56.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.418 -07 000000429 INF: FPGA: Recv ZSGSRD 29622
17-03-17 21:52:56.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.428 -07 000000480 INF: FPGA: Recv ZSGSRD 29615
17-03-17 21:52:56.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.438 -07 000000569 INF: FPGA: Recv ZSGSRD 29616
17-03-17 21:52:56.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29615
17-03-17 21:52:56.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.458 -07 000000608 INF: FPGA: Recv ZSGSRD 29613
17-03-17 21:52:56.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.468 -07 000000429 INF: FPGA: Recv ZSGSRD 29617
17-03-17 21:52:56.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.478 -07 000000382 INF: FPGA: Recv ZSGSRD 29620
17-03-17 21:52:56.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29614
17-03-17 21:52:56.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:56.498 -07 000000512 INF: FPGA: Recv ZSGSRD 29615
17-03-17 21:52:56.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:56.508 -07 000000547 INF: FPGA: Recv ZPIEZORD 25355
17-03-17 21:52:56.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:56.518 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.4 V.
17-03-17 21:52:56.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29616 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29615 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29612 (-129.8 uncal um), Max = 29622 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:52:56.518 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29616, posNoise = 6, negNoise = 4
17-03-17 21:52:56.518 -07 000000610 INF: Z Motor: After move to -0.130575, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:56.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:52:56.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:56.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:56.518 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:56.518 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:56.518 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:52:56.518 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:52:56.518 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:52:56.518 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:56.518 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:52:56.518 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:52:56.518 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:56.518 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:52:56.528 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:56.528 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:52:56.528 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:52:56.528 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:52:56.538 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:52:56.538 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:52:56.538 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:52:56.538 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:52:56.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28701 150\n [Camera]
17-03-17 21:52:56.738 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:52:56.918 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:52:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:52:57.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:52:57.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:52:57.178 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:57.178 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:57.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:52:57.178 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:52:57.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:52:57.188 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:57.188 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:57.188 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:52:57.368 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28701 825
17-03-17 21:52:57.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 21:52:57.578 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:52:57.578 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:52:57.578 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:57.578 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:52:57.578 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:52:57.578 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:57.588 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:52:57.588 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:52:57.588 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:57.588 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:52:57.738 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:52:57.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:52:57.738 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:52:57.738 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:52:57.738 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:52:57.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:52:57.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:52:57.738 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:52:57.738 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:52:57.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:52:57.928 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:52:57.928 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:52:57.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28701 150' command took 2 ms to send, 1383 ms to get response, and 1387 ms overall
17-03-17 21:52:57.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:52:57.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130582818801528. ------
17-03-17 21:52:57.928 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:57.928 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13724 mm
17-03-17 21:52:57.928 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:52:57.938 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:57.938 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:57.938 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:52:57.938 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:52:57.938 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 21:52:57.938 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29980, sync = True, waitForSettling = False)
17-03-17 21:52:57.938 -07 000000576 INF: Z Motor: Moving to -0.137240 mm, started at -0.130583 mm, distance = -6.66 um
17-03-17 21:52:57.948 -07 000000576 INF: FPGA: Xmit ZDACW 29980\n [Z Motor]
17-03-17 21:52:57.948 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:52:57.958 -07 000000576 INF: FPGA: 'ZDACW 29980' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:52:57.958 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:57.958 -07 000000012 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:52:57.968 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:52:57.968 -07 000000626 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:57.968 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:52:57.968 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:52:57.968 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:52:57.968 -07 000000438 INF: FPGA: Recv ZDACR 29980
17-03-17 21:52:57.978 -07 000000576 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:52:57.978 -07 000000576 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:52:57.978 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:52:58.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:52:58.128 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:52:58.128 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:58.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:52:58.128 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:52:58.128 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:58.128 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:52:58.138 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:52:58.138 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:52:58.138 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:52:58.138 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:52:58.138 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:52:58.348 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:52:58.348 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:52:58.388 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:58.398 -07 000000475 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:52:58.398 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:52:58.398 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:58.398 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:52:58.398 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 21:52:59.188 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.978563,
17-03-17 21:52:59.348 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:52:59.348 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:52:59.358 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:52:59.358 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:52:59.378 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:52:59.378 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:52:59.378 -07 000000626 INF: Y Motor: Moved to 69.0273 after 1441 ms (table move)
17-03-17 21:52:59.378 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137240 mm (DAC = 29980)
17-03-17 21:52:59.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.388 -07 000000458 INF: FPGA: Recv ZSGSRD 30658
17-03-17 21:52:59.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:52:59.388 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.388 -07 000000608 INF: FPGA: Recv ZSGSRD 30651
17-03-17 21:52:59.398 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:52:59.398 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.398 -07 000000459 INF: FPGA: Recv ZSGSRD 30652
17-03-17 21:52:59.408 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.408 -07 000000501 INF: FPGA: Recv ZSGSRD 30662
17-03-17 21:52:59.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.418 -07 000000476 INF: FPGA: Recv ZSGSRD 30654
17-03-17 21:52:59.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.428 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.428 -07 000000626 INF: FPGA: Recv ZSGSRD 30654
17-03-17 21:52:59.438 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.438 -07 000000382 INF: FPGA: Recv ZSGSRD 30652
17-03-17 21:52:59.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.448 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.448 -07 000000415 INF: FPGA: Recv ZSGSRD 30648
17-03-17 21:52:59.458 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.458 -07 000000627 INF: FPGA: Recv ZSGSRD 30651
17-03-17 21:52:59.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.468 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:52:59.468 -07 000000431 INF: FPGA: Recv ZSGSRD 30649
17-03-17 21:52:59.478 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.478 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:52:59.478 -07 000000458 INF: FPGA: Recv ZPIEZORD 26718
17-03-17 21:52:59.488 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:52:59.488 -07 000000424 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -8.7 V.
17-03-17 21:52:59.488 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30653 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30652 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30648 (-136.4 uncal um), Max = 30662 (-136.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:52:59.488 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30653, posNoise = 9, negNoise = 5
17-03-17 21:52:59.488 -07 000000424 INF: Z Motor: After move to -0.137240, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:52:59.488 -07 000000424 INF: Z Motor: Settle wait time = 1445 ms, measure time = 101 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:52:59.488 -07 000000424 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:52:59.538 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:52:59.538 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:52:59.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:52:59.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:52:59.538 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:52:59.538 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:52:59.538 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:52:59.538 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:52:59.538 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:52:59.538 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:52:59.548 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:52:59.548 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:52:59.558 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:52:59.558 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:52:59.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:52:59.608 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:52:59.808 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:52:59.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:52:59.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:52:59.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405138864, 0x0, 559484976) start.
17-03-17 21:52:59.848 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:52:59.848 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:52:59.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:52:59.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2405138864, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:52:59.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:52:59.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:52:59.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:52:59.948 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:52:59.948 -07 000000626 INF: Autofocus start
17-03-17 21:52:59.948 -07 000000626 INF: MeasureProfile start
17-03-17 21:52:59.948 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:52:59.958 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:52:59.958 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:52:59.958 -07 000000626 INF: MeasureProfile done
17-03-17 21:52:59.958 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:52:59.958 -07 000000626 INF: Autofocus finished
17-03-17 21:53:00.158 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:00.158 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:53:00.158 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137244726792534. ----------
17-03-17 21:53:00.158 -07 000000610 INF: Cycle	56	Tile	12	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:00.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28487, sync = True, waitForSettling = True)
17-03-17 21:53:00.168 -07 000000610 INF: Z Motor: Moving to -0.130405 mm, started at -0.137245 mm, distance = 6.84 um
17-03-17 21:53:00.168 -07 000000610 INF: FPGA: Xmit ZDACW 28487\n [Z Motor]
17-03-17 21:53:00.168 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:53:00.178 -07 000000610 INF: FPGA: 'ZDACW 28487' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:53:00.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:00.178 -07 000000608 INF: FPGA: Recv ZDACR 28487
17-03-17 21:53:00.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:00.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.338 -07 000000012 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:53:00.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.348 -07 000000459 INF: FPGA: Recv ZSGSRD 29588
17-03-17 21:53:00.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29595
17-03-17 21:53:00.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.368 -07 000000626 INF: FPGA: Recv ZSGSRD 29588
17-03-17 21:53:00.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.378 -07 000000458 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:53:00.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.388 -07 000000569 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:53:00.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.398 -07 000000627 INF: FPGA: Recv ZSGSRD 29594
17-03-17 21:53:00.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.408 -07 000000480 INF: FPGA: Recv ZSGSRD 29588
17-03-17 21:53:00.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.418 -07 000000576 INF: FPGA: Recv ZSGSRD 29587
17-03-17 21:53:00.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:00.428 -07 000000512 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:53:00.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:00.438 -07 000000415 INF: FPGA: Recv ZPIEZORD 25354
17-03-17 21:53:00.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:00.448 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.3 V.
17-03-17 21:53:00.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29589 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29588 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29586 (-129.6 uncal um), Max = 29595 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:53:00.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29589, posNoise = 6, negNoise = 3
17-03-17 21:53:00.448 -07 000000610 INF: Z Motor: After move to -0.130405, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:00.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:53:00.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:00.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:00.448 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:00.448 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:00.448 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:00.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:00.448 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:00.448 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:00.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:00.458 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:00.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:53:00.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:00.458 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:00.458 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:00.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:00.458 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:00.468 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:53:00.468 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:53:00.468 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:53:00.468 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:53:00.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28664 150\n [Camera]
17-03-17 21:53:00.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:53:01.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:01.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:01.108 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:01.108 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:01.108 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:53:01.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:01.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:01.108 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:01.108 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:01.118 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:53:01.298 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28664 825
17-03-17 21:53:01.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:01.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:53:01.498 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:53:01.498 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:01.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:53:01.498 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:53:01.498 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:01.498 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:01.498 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:01.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:53:01.508 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:53:01.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:01.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:01.668 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:01.668 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:01.668 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:53:01.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:01.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:01.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:01.668 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:01.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:53:01.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:53:01.858 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:01.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28664 150' command took 2 ms to send, 1382 ms to get response, and 1386 ms overall
17-03-17 21:53:01.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:01.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.1304093650737. ------
17-03-17 21:53:01.858 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:01.858 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13682 mm
17-03-17 21:53:01.858 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:01.868 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:01.868 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:53:01.868 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:01.868 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:53:01.868 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 21:53:01.868 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29889, sync = True, waitForSettling = False)
17-03-17 21:53:01.868 -07 000000012 INF: Z Motor: Moving to -0.136823 mm, started at -0.130409 mm, distance = -6.41 um
17-03-17 21:53:01.878 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:01.878 -07 000000576 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:53:01.888 -07 000000012 INF: FPGA: Xmit ZDACW 29889\n [Z Motor]
17-03-17 21:53:01.888 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:53:01.888 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:01.888 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:53:01.888 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:01.888 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:53:01.898 -07 000000012 INF: FPGA: 'ZDACW 29889' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:53:01.898 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:01.898 -07 000000429 INF: FPGA: Recv ZDACR 29889
17-03-17 21:53:01.908 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:01.908 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:01.908 -07 000000012 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 21:53:01.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:02.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:53:02.048 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:53:02.048 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:02.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:53:02.048 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:53:02.048 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:02.058 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:02.058 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:53:02.058 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:53:02.058 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:53:02.068 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:02.068 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:53:02.278 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:53:02.278 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:53:02.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:02.328 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:53:02.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:53:02.328 -07 000000501 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:02.328 -07 000000501 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:53:02.328 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-17 21:53:03.278 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:03.278 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:53:03.288 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.288 -07 000000501 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:03.308 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:03.308 -07 000000501 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:53:03.308 -07 000000501 INF: Y Motor: Moved to 69.8633 after 1439 ms (table move)
17-03-17 21:53:03.308 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136823 mm (DAC = 29889)
17-03-17 21:53:03.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.318 -07 000000475 INF: FPGA: Recv ZSGSRD 30596
17-03-17 21:53:03.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:53:03.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.318 -07 000000480 INF: FPGA: Recv ZSGSRD 30587
17-03-17 21:53:03.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:53:03.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.328 -07 000000382 INF: FPGA: Recv ZSGSRD 30593
17-03-17 21:53:03.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:03.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.338 -07 000000438 INF: FPGA: Recv ZSGSRD 30593
17-03-17 21:53:03.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.348 -07 000000429 INF: FPGA: Recv ZSGSRD 30590
17-03-17 21:53:03.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.358 -07 000000476 INF: FPGA: Recv ZSGSRD 30587
17-03-17 21:53:03.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.368 -07 000000547 INF: FPGA: Recv ZSGSRD 30588
17-03-17 21:53:03.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.378 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.378 -07 000000424 INF: FPGA: Recv ZSGSRD 30585
17-03-17 21:53:03.388 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.388 -07 000000415 INF: FPGA: Recv ZSGSRD 30585
17-03-17 21:53:03.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:03.398 -07 000000480 INF: FPGA: Recv ZSGSRD 30585
17-03-17 21:53:03.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.408 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:03.408 -07 000000476 INF: FPGA: Recv ZPIEZORD 26675
17-03-17 21:53:03.418 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:03.418 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -8.6 V.
17-03-17 21:53:03.418 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30589 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30588 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30585 (-136.0 uncal um), Max = 30596 (-136.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:53:03.418 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30589, posNoise = 7, negNoise = 4
17-03-17 21:53:03.418 -07 000000512 INF: Z Motor: After move to -0.136823, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:03.418 -07 000000512 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:53:03.418 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:03.468 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:53:03.468 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:03.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:03.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:03.468 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:03.468 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:03.468 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:03.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:03.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:03.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:03.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:03.478 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:03.478 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:53:03.478 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:53:03.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:03.528 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:53:03.728 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:53:03.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:53:03.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:03.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 21:53:03.768 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:03.768 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:03.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:53:03.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:53:03.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:03.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:53:03.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:53:03.868 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:03.868 -07 000000459 INF: Autofocus start
17-03-17 21:53:03.868 -07 000000459 INF: MeasureProfile start
17-03-17 21:53:03.868 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:03.878 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:53:03.878 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:03.878 -07 000000459 INF: MeasureProfile done
17-03-17 21:53:03.878 -07 000000459 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:53:03.878 -07 000000459 INF: Autofocus finished
17-03-17 21:53:04.078 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:04.078 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:53:04.078 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136833577215461. ----------
17-03-17 21:53:04.088 -07 000000610 INF: Cycle	56	Tile	13	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:04.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28413, sync = True, waitForSettling = True)
17-03-17 21:53:04.088 -07 000000610 INF: Z Motor: Moving to -0.130066 mm, started at -0.136834 mm, distance = 6.77 um
17-03-17 21:53:04.088 -07 000000610 INF: FPGA: Xmit ZDACW 28413\n [Z Motor]
17-03-17 21:53:04.088 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:53:04.098 -07 000000610 INF: FPGA: 'ZDACW 28413' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:53:04.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:04.098 -07 000000608 INF: FPGA: Recv ZDACR 28413
17-03-17 21:53:04.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29534
17-03-17 21:53:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.268 -07 000000424 INF: FPGA: Recv ZSGSRD 29540
17-03-17 21:53:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.278 -07 000000627 INF: FPGA: Recv ZSGSRD 29537
17-03-17 21:53:04.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.288 -07 000000480 INF: FPGA: Recv ZSGSRD 29535
17-03-17 21:53:04.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.298 -07 000000512 INF: FPGA: Recv ZSGSRD 29538
17-03-17 21:53:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.308 -07 000000438 INF: FPGA: Recv ZSGSRD 29537
17-03-17 21:53:04.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.318 -07 000000431 INF: FPGA: Recv ZSGSRD 29538
17-03-17 21:53:04.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.328 -07 000000429 INF: FPGA: Recv ZSGSRD 29532
17-03-17 21:53:04.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.338 -07 000000626 INF: FPGA: Recv ZSGSRD 29536
17-03-17 21:53:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:04.348 -07 000000459 INF: FPGA: Recv ZSGSRD 29538
17-03-17 21:53:04.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:04.358 -07 000000476 INF: FPGA: Recv ZPIEZORD 25282
17-03-17 21:53:04.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:04.368 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.3 V.
17-03-17 21:53:04.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29536 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29537 (-129.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29532 (-129.3 uncal um), Max = 29540 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:53:04.368 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29536, posNoise = 4, negNoise = 4
17-03-17 21:53:04.368 -07 000000610 INF: Z Motor: After move to -0.130066, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:04.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:53:04.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:04.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:04.368 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:04.368 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:04.368 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:04.368 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:04.368 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:04.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:04.368 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:04.368 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:04.368 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:53:04.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:04.378 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:53:04.378 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:04.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:04.378 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:04.388 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 21:53:04.388 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:53:04.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:53:04.388 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:53:04.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28590 150\n [Camera]
17-03-17 21:53:04.558 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.981281,
17-03-17 21:53:04.588 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:53:05.028 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:05.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:05.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:05.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:05.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:53:05.038 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:05.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:05.038 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:05.038 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:05.038 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:53:05.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28590 825
17-03-17 21:53:05.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:05.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:53:05.418 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:53:05.418 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:05.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:53:05.428 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:53:05.428 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:05.428 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:05.428 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:53:05.428 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:05.438 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:53:05.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:05.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:05.588 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:05.588 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:05.588 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:53:05.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:05.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:05.588 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:05.718 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:05.728 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:53:05.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:53:05.778 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:05.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28590 150' command took 2 ms to send, 1382 ms to get response, and 1386 ms overall
17-03-17 21:53:05.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:05.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130068881830187. ------
17-03-17 21:53:05.778 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:05.778 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13644 mm
17-03-17 21:53:05.778 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:05.778 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:53:05.778 -07 000000480 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:53:05.788 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29805, sync = True, waitForSettling = False)
17-03-17 21:53:05.788 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:05.788 -07 000000608 INF: Z Motor: Moving to -0.136439 mm, started at -0.130069 mm, distance = -6.37 um
17-03-17 21:53:05.788 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:05.788 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:53:05.788 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:53:05.798 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:05.798 -07 000000480 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:05.798 -07 000000608 INF: FPGA: Xmit ZDACW 29805\n [Z Motor]
17-03-17 21:53:05.798 -07 000000480 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:05.798 -07 000000480 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:53:05.798 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:53:05.808 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:05.808 -07 000000608 INF: FPGA: 'ZDACW 29805' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:53:05.818 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:05.828 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:05.828 -07 000000475 INF: FPGA: Recv ZDACR 29805
17-03-17 21:53:05.838 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:53:05.838 -07 000000608 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:53:05.988 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 21:53:05.988 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:53:05.988 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:05.998 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:53:05.998 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:53:06.008 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:06.008 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:53:06.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:53:06.118 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:53:06.118 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:06.118 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:53:06.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 536 ms.
17-03-17 21:53:06.188 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:53:06.188 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:53:06.228 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:06.238 -07 000000476 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:53:06.238 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:53:06.238 -07 000000480 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:06.238 -07 000000480 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:53:06.238 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:53:06.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:06.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:07.188 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:07.188 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:53:07.198 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.198 -07 000000480 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:07.218 -07 000000480 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:07.218 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:53:07.218 -07 000000480 INF: Y Motor: Moved to 70.6885 after 1434 ms (table move)
17-03-17 21:53:07.218 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136439 mm (DAC = 29805)
17-03-17 21:53:07.218 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.228 -07 000000415 INF: FPGA: Recv ZSGSRD 30524
17-03-17 21:53:07.228 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 21:53:07.228 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.228 -07 000000501 INF: FPGA: Recv ZSGSRD 30529
17-03-17 21:53:07.238 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:07.238 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.238 -07 000000438 INF: FPGA: Recv ZSGSRD 30524
17-03-17 21:53:07.248 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.248 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30526
17-03-17 21:53:07.258 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.258 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.258 -07 000000431 INF: FPGA: Recv ZSGSRD 30535
17-03-17 21:53:07.268 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.268 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.268 -07 000000382 INF: FPGA: Recv ZSGSRD 30538
17-03-17 21:53:07.278 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.278 -07 000000458 INF: FPGA: Recv ZSGSRD 30531
17-03-17 21:53:07.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.288 -07 000000547 INF: FPGA: Recv ZSGSRD 30524
17-03-17 21:53:07.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.298 -07 000000475 INF: FPGA: Recv ZSGSRD 30533
17-03-17 21:53:07.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:07.308 -07 000000512 INF: FPGA: Recv ZSGSRD 30524
17-03-17 21:53:07.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.318 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:07.318 -07 000000626 INF: FPGA: Recv ZPIEZORD 26601
17-03-17 21:53:07.328 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:07.328 -07 000000012 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -8.7 V.
17-03-17 21:53:07.328 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30529 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30524 (-135.6 uncal um), Max = 30538 (-135.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:53:07.328 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30529, posNoise = 9, negNoise = 5
17-03-17 21:53:07.328 -07 000000012 INF: Z Motor: After move to -0.136439, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:07.328 -07 000000012 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:53:07.328 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:07.378 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:53:07.378 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:07.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:07.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:07.378 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:07.378 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:07.378 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:07.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:07.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:07.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:07.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:07.388 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:07.398 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:53:07.398 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:53:07.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:07.448 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:53:07.648 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:53:07.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:53:07.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:07.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:53:07.688 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:07.688 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:07.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:53:07.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:53:07.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:07.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:53:07.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:53:07.788 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:07.788 -07 000000569 INF: Autofocus start
17-03-17 21:53:07.788 -07 000000569 INF: MeasureProfile start
17-03-17 21:53:07.788 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:07.798 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:53:07.798 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:07.798 -07 000000569 INF: MeasureProfile done
17-03-17 21:53:07.798 -07 000000569 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:53:07.798 -07 000000569 INF: Autofocus finished
17-03-17 21:53:07.998 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:07.998 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:53:07.998 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136448124486955. ----------
17-03-17 21:53:07.998 -07 000000610 INF: Cycle	56	Tile	14	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:08.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28346, sync = True, waitForSettling = True)
17-03-17 21:53:08.008 -07 000000610 INF: Z Motor: Moving to -0.129760 mm, started at -0.136448 mm, distance = 6.69 um
17-03-17 21:53:08.008 -07 000000610 INF: FPGA: Xmit ZDACW 28346\n [Z Motor]
17-03-17 21:53:08.008 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:53:08.018 -07 000000610 INF: FPGA: 'ZDACW 28346' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:08.018 -07 000000415 INF: FPGA: Recv ZDACR 28346
17-03-17 21:53:08.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.178 -07 000000627 INF: FPGA: Recv ZSGSRD 29490
17-03-17 21:53:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.188 -07 000000547 INF: FPGA: Recv ZSGSRD 29493
17-03-17 21:53:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.198 -07 000000608 INF: FPGA: Recv ZSGSRD 29484
17-03-17 21:53:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.208 -07 000000424 INF: FPGA: Recv ZSGSRD 29490
17-03-17 21:53:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.218 -07 000000569 INF: FPGA: Recv ZSGSRD 29489
17-03-17 21:53:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.228 -07 000000626 INF: FPGA: Recv ZSGSRD 29491
17-03-17 21:53:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29488
17-03-17 21:53:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.248 -07 000000438 INF: FPGA: Recv ZSGSRD 29483
17-03-17 21:53:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.258 -07 000000459 INF: FPGA: Recv ZSGSRD 29492
17-03-17 21:53:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:08.268 -07 000000012 INF: FPGA: Recv ZSGSRD 29488
17-03-17 21:53:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:08.278 -07 000000415 INF: FPGA: Recv ZPIEZORD 25238
17-03-17 21:53:08.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:08.288 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -9.3 V.
17-03-17 21:53:08.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29489 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29490 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29483 (-129.0 uncal um), Max = 29493 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:53:08.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29489, posNoise = 4, negNoise = 6
17-03-17 21:53:08.288 -07 000000610 INF: Z Motor: After move to -0.129760, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:08.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:53:08.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:08.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:08.288 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:08.288 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:08.288 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:08.288 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:08.288 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:08.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:08.288 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:08.288 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:08.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:53:08.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:08.288 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:53:08.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:53:08.288 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:08.298 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:08.298 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:53:08.308 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:53:08.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:53:08.308 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:53:08.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28522 150\n [Camera]
17-03-17 21:53:08.508 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:53:08.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:08.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:08.948 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:08.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:08.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:08.948 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:08.958 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:08.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:53:08.958 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:08.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:53:09.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28522 825
17-03-17 21:53:09.288 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:09.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:53:09.328 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:53:09.328 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:09.328 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:53:09.328 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:53:09.328 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:09.338 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:09.338 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:53:09.338 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:09.338 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:53:09.498 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:09.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:09.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:09.508 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:09.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:09.508 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:09.628 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:09.628 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:53:09.628 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:09.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:53:09.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:53:09.698 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:09.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28522 150' command took 2 ms to send, 1381 ms to get response, and 1387 ms overall
17-03-17 21:53:09.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:09.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129766943859524. ------
17-03-17 21:53:09.698 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:09.698 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13598 mm
17-03-17 21:53:09.698 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:09.708 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:09.708 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:09.708 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:53:09.708 -07 000000424 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 21:53:09.708 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:09.708 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29705, sync = True, waitForSettling = False)
17-03-17 21:53:09.708 -07 000000459 INF: Z Motor: Moving to -0.135981 mm, started at -0.129767 mm, distance = -6.21 um
17-03-17 21:53:09.708 -07 000000547 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:53:09.718 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:09.718 -07 000000424 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:09.718 -07 000000459 INF: FPGA: Xmit ZDACW 29705\n [Z Motor]
17-03-17 21:53:09.718 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:53:09.718 -07 000000424 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:09.718 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:53:09.728 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:09.728 -07 000000459 INF: FPGA: 'ZDACW 29705' command took 2 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:53:09.738 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:09.748 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:09.748 -07 000000627 INF: FPGA: Recv ZDACR 29705
17-03-17 21:53:09.758 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:53:09.758 -07 000000459 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:53:09.928 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:09.928 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 21:53:09.938 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.98264,
17-03-17 21:53:10.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:53:10.008 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:53:10.008 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:10.008 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:10.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:53:10.008 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:53:10.008 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:10.018 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:10.018 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:53:10.018 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 21:53:10.108 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:53:10.108 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:53:10.148 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:10.148 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:53:10.158 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:10.158 -07 000000424 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:10.158 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:53:10.158 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 21:53:11.108 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:11.108 -07 000000476 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:53:11.118 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:11.118 -07 000000424 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:11.138 -07 000000424 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:11.138 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:53:11.138 -07 000000424 INF: Y Motor: Moved to 71.5190 after 1434 ms (table move)
17-03-17 21:53:11.138 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135981 mm (DAC = 29705)
17-03-17 21:53:11.138 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.148 -07 000000459 INF: FPGA: Recv ZSGSRD 30467
17-03-17 21:53:11.148 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:53:11.148 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.148 -07 000000627 INF: FPGA: Recv ZSGSRD 30462
17-03-17 21:53:11.158 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:53:11.158 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30450
17-03-17 21:53:11.168 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.168 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30456
17-03-17 21:53:11.178 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.178 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.178 -07 000000475 INF: FPGA: Recv ZSGSRD 30462
17-03-17 21:53:11.188 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.188 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30467
17-03-17 21:53:11.198 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.198 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.198 -07 000000512 INF: FPGA: Recv ZSGSRD 30453
17-03-17 21:53:11.208 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30456
17-03-17 21:53:11.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30454
17-03-17 21:53:11.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:11.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30455
17-03-17 21:53:11.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.238 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:11.238 -07 000000547 INF: FPGA: Recv ZPIEZORD 26520
17-03-17 21:53:11.248 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.248 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -8.7 V.
17-03-17 21:53:11.248 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30458 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30456 (-135.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30450 (-135.1 uncal um), Max = 30467 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:53:11.248 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30458, posNoise = 9, negNoise = 8
17-03-17 21:53:11.248 -07 000000501 INF: Z Motor: After move to -0.135981, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:11.248 -07 000000501 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:53:11.248 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:11.298 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:53:11.298 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:11.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:11.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:11.298 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:11.298 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:11.298 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:11.298 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:11.298 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:53:11.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:11.308 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:11.308 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:11.318 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:53:11.318 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:53:11.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:11.368 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:53:11.568 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:53:11.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:53:11.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:11.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:53:11.608 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:11.608 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:11.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:53:11.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:53:11.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:11.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:53:11.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:53:11.708 -07 000000475 INF: Autofocus start
17-03-17 21:53:11.708 -07 000000475 INF: MeasureProfile start
17-03-17 21:53:11.708 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:11.708 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:11.718 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:11.718 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:11.718 -07 000000475 INF: MeasureProfile done
17-03-17 21:53:11.718 -07 000000475 INF: X=96  Z correction [um]=0.437849
17-03-17 21:53:11.718 -07 000000475 INF: Autofocus finished
17-03-17 21:53:11.918 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:11.918 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 21:53:11.918 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:11.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:11.918 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.13599200542489. ----------
17-03-17 21:53:11.928 -07 000000610 INF: Cycle	56	Tile	15	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:11.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28313, sync = True, waitForSettling = True)
17-03-17 21:53:11.928 -07 000000610 INF: Z Motor: Moving to -0.129609 mm, started at -0.135992 mm, distance = 6.38 um
17-03-17 21:53:11.928 -07 000000610 INF: FPGA: Xmit ZDACW 28313\n [Z Motor]
17-03-17 21:53:11.928 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:53:11.938 -07 000000610 INF: FPGA: 'ZDACW 28313' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:11.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:11.938 -07 000000438 INF: FPGA: Recv ZDACR 28313
17-03-17 21:53:11.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:11.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.098 -07 000000475 INF: FPGA: Recv ZSGSRD 29465
17-03-17 21:53:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.108 -07 000000012 INF: FPGA: Recv ZSGSRD 29465
17-03-17 21:53:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29466
17-03-17 21:53:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.128 -07 000000547 INF: FPGA: Recv ZSGSRD 29459
17-03-17 21:53:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.138 -07 000000382 INF: FPGA: Recv ZSGSRD 29473
17-03-17 21:53:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.148 -07 000000476 INF: FPGA: Recv ZSGSRD 29465
17-03-17 21:53:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29460
17-03-17 21:53:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.168 -07 000000424 INF: FPGA: Recv ZSGSRD 29466
17-03-17 21:53:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.178 -07 000000459 INF: FPGA: Recv ZSGSRD 29462
17-03-17 21:53:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:12.188 -07 000000438 INF: FPGA: Recv ZSGSRD 29465
17-03-17 21:53:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:12.198 -07 000000415 INF: FPGA: Recv ZPIEZORD 25195
17-03-17 21:53:12.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:12.208 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.4 V.
17-03-17 21:53:12.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29465 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29465 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29459 (-128.8 uncal um), Max = 29473 (-128.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:53:12.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29465, posNoise = 8, negNoise = 6
17-03-17 21:53:12.208 -07 000000610 INF: Z Motor: After move to -0.129609, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:12.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:53:12.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:12.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:12.208 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:12.208 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:12.208 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:12.208 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:12.208 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:12.208 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:12.208 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:53:12.208 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:12.208 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:12.208 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:12.218 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:12.218 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:12.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:12.218 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:12.228 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:53:12.228 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:53:12.228 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:53:12.228 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:53:12.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28490 150\n [Camera]
17-03-17 21:53:12.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 21:53:12.868 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:12.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:12.868 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:12.868 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:12.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:12.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:12.868 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:12.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:53:12.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:12.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:53:13.058 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28490 825
17-03-17 21:53:13.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:13.248 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:53:13.248 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:53:13.248 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:13.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:53:13.248 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:53:13.248 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:13.258 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:53:13.258 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:53:13.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:13.258 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:53:13.418 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:13.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:13.418 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:13.418 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:13.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) start.
17-03-17 21:53:13.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:13.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:13.428 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:13.428 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:13.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2351169400, 0x0, 418435064) start.
17-03-17 21:53:13.608 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:53:13.608 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:13.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28490 150' command took 2 ms to send, 1379 ms to get response, and 1386 ms overall
17-03-17 21:53:13.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:13.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129612762768122. ------
17-03-17 21:53:13.618 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:13.618 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13588 mm
17-03-17 21:53:13.618 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:13.618 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:13.628 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:53:13.628 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29683, sync = True, waitForSettling = False)
17-03-17 21:53:13.628 -07 000000627 INF: Z Motor: Moving to -0.135880 mm, started at -0.129613 mm, distance = -6.27 um
17-03-17 21:53:13.628 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:13.628 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:53:13.628 -07 000000547 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 21:53:13.638 -07 000000627 INF: FPGA: Xmit ZDACW 29683\n [Z Motor]
17-03-17 21:53:13.638 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:53:13.648 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:13.648 -07 000000627 INF: FPGA: 'ZDACW 29683' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:53:13.648 -07 000000576 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:53:13.658 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:53:13.658 -07 000000547 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:13.658 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:13.658 -07 000000475 INF: FPGA: Recv ZDACR 29683
17-03-17 21:53:13.658 -07 000000547 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:13.658 -07 000000547 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:53:13.668 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:53:13.668 -07 000000627 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:53:13.668 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:13.828 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2298872072, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:53:13.828 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:53:13.828 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:13.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2351169400, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:53:13.828 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:53:13.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:13.828 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:13.828 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:53:13.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:13.828 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:53:13.838 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:53:13.838 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:53:14.038 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:53:14.038 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:53:14.078 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:14.078 -07 000000475 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:53:14.088 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:14.088 -07 000000547 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:14.088 -07 000000547 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:53:14.088 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 21:53:15.038 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:15.038 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:53:15.048 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:15.048 -07 000000547 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:15.068 -07 000000547 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:15.068 -07 000000547 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:53:15.068 -07 000000547 INF: Y Motor: Moved to 72.3496 after 1442 ms (table move)
17-03-17 21:53:15.068 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135880 mm (DAC = 29683)
17-03-17 21:53:15.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30448
17-03-17 21:53:15.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:53:15.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.078 -07 000000459 INF: FPGA: Recv ZSGSRD 30446
17-03-17 21:53:15.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:53:15.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.088 -07 000000476 INF: FPGA: Recv ZSGSRD 30445
17-03-17 21:53:15.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.098 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.098 -07 000000382 INF: FPGA: Recv ZSGSRD 30443
17-03-17 21:53:15.108 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.108 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.108 -07 000000415 INF: FPGA: Recv ZSGSRD 30443
17-03-17 21:53:15.118 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.118 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.118 -07 000000438 INF: FPGA: Recv ZSGSRD 30444
17-03-17 21:53:15.128 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.128 -07 000000627 INF: FPGA: Recv ZSGSRD 30438
17-03-17 21:53:15.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.138 -07 000000576 INF: FPGA: Recv ZSGSRD 30442
17-03-17 21:53:15.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.148 -07 000000547 INF: FPGA: Recv ZSGSRD 30441
17-03-17 21:53:15.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:15.158 -07 000000415 INF: FPGA: Recv ZSGSRD 30437
17-03-17 21:53:15.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.168 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:15.168 -07 000000626 INF: FPGA: Recv ZPIEZORD 26485
17-03-17 21:53:15.178 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:15.178 -07 000000429 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -8.7 V.
17-03-17 21:53:15.178 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30443 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30443 (-135.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30437 (-135.1 uncal um), Max = 30448 (-135.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:53:15.178 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30443, posNoise = 5, negNoise = 6
17-03-17 21:53:15.178 -07 000000429 INF: Z Motor: After move to -0.135880, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:15.178 -07 000000429 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:53:15.178 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:15.228 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:53:15.228 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:15.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:15.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:15.228 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:15.228 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:15.228 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:15.228 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:15.228 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:15.228 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:15.238 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:15.238 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:15.248 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:53:15.248 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:53:15.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:15.298 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:53:15.298 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.99219,
17-03-17 21:53:15.498 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:53:15.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:53:15.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:15.608 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:15.608 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:15.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:53:15.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 354 ms to get response, and 359 ms overall
17-03-17 21:53:15.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:53:15.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:15.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:53:15.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 232 ms.
17-03-17 21:53:15.808 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:15.808 -07 000000431 INF: Autofocus start
17-03-17 21:53:15.808 -07 000000431 INF: MeasureProfile start
17-03-17 21:53:15.808 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:15.818 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:15.818 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:15.818 -07 000000431 INF: MeasureProfile done
17-03-17 21:53:15.818 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:53:15.818 -07 000000431 INF: Autofocus finished
17-03-17 21:53:16.018 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:16.018 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 21:53:16.018 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135895642242764. ----------
17-03-17 21:53:16.018 -07 000000610 INF: Cycle	56	Tile	16	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:16.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28207, sync = True, waitForSettling = True)
17-03-17 21:53:16.028 -07 000000610 INF: Z Motor: Moving to -0.129123 mm, started at -0.135896 mm, distance = 6.77 um
17-03-17 21:53:16.028 -07 000000610 INF: FPGA: Xmit ZDACW 28207\n [Z Motor]
17-03-17 21:53:16.028 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:53:16.038 -07 000000610 INF: FPGA: 'ZDACW 28207' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:16.038 -07 000000438 INF: FPGA: Recv ZDACR 28207
17-03-17 21:53:16.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:16.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.198 -07 000000576 INF: FPGA: Recv ZSGSRD 29390
17-03-17 21:53:16.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29386
17-03-17 21:53:16.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29385
17-03-17 21:53:16.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29390
17-03-17 21:53:16.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.238 -07 000000424 INF: FPGA: Recv ZSGSRD 29389
17-03-17 21:53:16.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29389
17-03-17 21:53:16.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.258 -07 000000547 INF: FPGA: Recv ZSGSRD 29391
17-03-17 21:53:16.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.268 -07 000000459 INF: FPGA: Recv ZSGSRD 29391
17-03-17 21:53:16.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.278 -07 000000576 INF: FPGA: Recv ZSGSRD 29389
17-03-17 21:53:16.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:53:16.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:16.288 -07 000000627 INF: FPGA: Recv ZSGSRD 29387
17-03-17 21:53:16.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:16.298 -07 000000512 INF: FPGA: Recv ZPIEZORD 25132
17-03-17 21:53:16.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:16.308 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.4 V.
17-03-17 21:53:16.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29389 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29389 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29385 (-128.3 uncal um), Max = 29391 (-128.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:53:16.308 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29389, posNoise = 2, negNoise = 4
17-03-17 21:53:16.308 -07 000000610 INF: Z Motor: After move to -0.129123, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:16.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:53:16.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:16.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:16.308 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:16.308 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:16.308 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:16.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:16.308 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:16.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:16.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:53:16.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:16.308 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:53:16.308 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:16.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:53:16.318 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:16.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:16.318 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:16.318 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:53:16.328 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:53:16.328 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:53:16.328 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:53:16.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28384 150\n [Camera]
17-03-17 21:53:16.528 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:53:16.918 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:16.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:16.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:16.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:16.968 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:16.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:16.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:16.968 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:16.978 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:16.978 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:53:16.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:16.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) start.
17-03-17 21:53:17.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28384 825
17-03-17 21:53:17.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:17.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:53:17.348 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:53:17.348 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:17.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 21:53:17.348 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 21:53:17.348 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:17.348 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:53:17.348 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:53:17.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:53:17.358 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:53:17.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:17.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:17.528 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:17.528 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:17.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:17.528 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:17.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:53:17.528 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:17.528 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:17.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2351169400, 0x0, 418435064) start.
17-03-17 21:53:17.718 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:53:17.718 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:17.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28384 150' command took 2 ms to send, 1381 ms to get response, and 1387 ms overall
17-03-17 21:53:17.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:17.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.129124522645348. ------
17-03-17 21:53:17.828 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:17.828 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13572 mm
17-03-17 21:53:17.828 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:17.828 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:53:17.828 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:53:17.828 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29648, sync = True, waitForSettling = False)
17-03-17 21:53:17.828 -07 000000512 INF: Z Motor: Moving to -0.135720 mm, started at -0.129125 mm, distance = -6.60 um
17-03-17 21:53:17.828 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:17.838 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:53:17.838 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:17.838 -07 000000501 INF: FPGA: Recv YRDPOS 148173
17-03-17 21:53:17.848 -07 000000512 INF: FPGA: Xmit ZDACW 29648\n [Z Motor]
17-03-17 21:53:17.848 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:53:17.848 -07 000000438 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:17.848 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:53:17.848 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:17.848 -07 000000438 INF: Y Motor: Moving 1348 steps-27
17-03-17 21:53:17.858 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:17.858 -07 000000512 INF: FPGA: 'ZDACW 29648' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:53:17.868 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:17.878 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:17.878 -07 000000569 INF: FPGA: Recv ZDACR 29648
17-03-17 21:53:17.888 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:53:17.888 -07 000000512 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:53:17.918 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:53:17.918 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:53:17.918 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:17.928 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2351169400, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:53:17.928 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:53:17.928 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:17.928 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:17.928 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:53:17.928 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:17.938 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:53:18.058 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:18.058 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:53:18.238 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:53:18.238 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:53:18.278 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:18.278 -07 000000459 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:53:18.288 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:18.288 -07 000000438 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:18.288 -07 000000438 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:53:18.288 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.150 mm/sec
17-03-17 21:53:19.238 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:19.238 -07 000000547 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:53:19.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.248 -07 000000438 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:19.268 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:19.268 -07 000000438 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:53:19.268 -07 000000438 INF: Y Motor: Moved to 73.1763 after 1437 ms (table move)
17-03-17 21:53:19.268 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135720 mm (DAC = 29648)
17-03-17 21:53:19.268 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.278 -07 000000512 INF: FPGA: Recv ZSGSRD 30424
17-03-17 21:53:19.278 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:53:19.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.278 -07 000000476 INF: FPGA: Recv ZSGSRD 30417
17-03-17 21:53:19.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:53:19.288 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.288 -07 000000576 INF: FPGA: Recv ZSGSRD 30412
17-03-17 21:53:19.298 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.298 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.298 -07 000000458 INF: FPGA: Recv ZSGSRD 30413
17-03-17 21:53:19.308 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.308 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30416
17-03-17 21:53:19.318 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.318 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30424
17-03-17 21:53:19.328 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.328 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.328 -07 000000608 INF: FPGA: Recv ZSGSRD 30409
17-03-17 21:53:19.338 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.338 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.338 -07 000000475 INF: FPGA: Recv ZSGSRD 30423
17-03-17 21:53:19.348 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.348 -07 000000569 INF: FPGA: Recv ZSGSRD 30416
17-03-17 21:53:19.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:19.358 -07 000000429 INF: FPGA: Recv ZSGSRD 30412
17-03-17 21:53:19.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.368 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:19.368 -07 000000501 INF: FPGA: Recv ZPIEZORD 26471
17-03-17 21:53:19.378 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:19.378 -07 000000424 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -8.7 V.
17-03-17 21:53:19.378 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30417 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30416 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30409 (-134.9 uncal um), Max = 30424 (-135.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:53:19.378 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30417, posNoise = 7, negNoise = 8
17-03-17 21:53:19.378 -07 000000424 INF: Z Motor: After move to -0.135720, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:19.378 -07 000000424 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:53:19.378 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:19.428 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:53:19.428 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:19.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:19.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:19.428 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:19.428 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:19.428 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:19.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:19.428 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:19.428 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:19.428 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:19.428 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:19.448 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:53:19.448 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:53:19.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:19.498 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:53:19.698 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:53:19.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:53:19.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:19.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:53:19.738 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:19.738 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:19.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 21:53:19.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:53:19.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:19.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:53:19.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:53:19.838 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:19.838 -07 000000429 INF: Autofocus start
17-03-17 21:53:19.838 -07 000000429 INF: MeasureProfile start
17-03-17 21:53:19.838 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:19.848 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:53:19.848 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:19.858 -07 000000429 INF: MeasureProfile done
17-03-17 21:53:19.858 -07 000000429 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:53:19.858 -07 000000429 INF: Autofocus finished
17-03-17 21:53:20.048 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:20.048 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:53:20.048 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135728612727078. ----------
17-03-17 21:53:20.048 -07 000000610 INF: Cycle	56	Tile	17	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:20.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28155, sync = True, waitForSettling = True)
17-03-17 21:53:20.058 -07 000000610 INF: Z Motor: Moving to -0.128885 mm, started at -0.135729 mm, distance = 6.84 um
17-03-17 21:53:20.058 -07 000000610 INF: FPGA: Xmit ZDACW 28155\n [Z Motor]
17-03-17 21:53:20.058 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:53:20.068 -07 000000610 INF: FPGA: 'ZDACW 28155' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:20.068 -07 000000501 INF: FPGA: Recv ZDACR 28155
17-03-17 21:53:20.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:20.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.228 -07 000000431 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:53:20.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.238 -07 000000012 INF: FPGA: Recv ZSGSRD 29360
17-03-17 21:53:20.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.248 -07 000000415 INF: FPGA: Recv ZSGSRD 29346
17-03-17 21:53:20.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.258 -07 000000459 INF: FPGA: Recv ZSGSRD 29347
17-03-17 21:53:20.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.268 -07 000000569 INF: FPGA: Recv ZSGSRD 29353
17-03-17 21:53:20.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.278 -07 000000424 INF: FPGA: Recv ZSGSRD 29356
17-03-17 21:53:20.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.288 -07 000000429 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:53:20.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.298 -07 000000501 INF: FPGA: Recv ZSGSRD 29359
17-03-17 21:53:20.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.308 -07 000000431 INF: FPGA: Recv ZSGSRD 29354
17-03-17 21:53:20.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:20.318 -07 000000626 INF: FPGA: Recv ZSGSRD 29356
17-03-17 21:53:20.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:20.328 -07 000000382 INF: FPGA: Recv ZPIEZORD 25099
17-03-17 21:53:20.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:20.338 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.3 V.
17-03-17 21:53:20.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29353 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29354 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29346 (-128.1 uncal um), Max = 29360 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:53:20.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29353, posNoise = 7, negNoise = 7
17-03-17 21:53:20.338 -07 000000610 INF: Z Motor: After move to -0.128885, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:20.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:53:20.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:20.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:20.338 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:20.338 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:20.338 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:20.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:20.338 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:20.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:20.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:53:20.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:20.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:53:20.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:20.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:53:20.348 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:20.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:20.348 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:20.348 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:53:20.348 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:53:20.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:53:20.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:53:20.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28332 150\n [Camera]
17-03-17 21:53:20.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:53:20.668 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.964938,
17-03-17 21:53:20.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:20.998 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:20.998 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:21.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:21.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:21.008 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:21.008 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:53:21.008 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:21.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) start.
17-03-17 21:53:21.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28332 825
17-03-17 21:53:21.338 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:21.378 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2298872072, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:53:21.378 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:53:21.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:21.378 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:53:21.378 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:53:21.388 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:21.388 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:53:21.388 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:21.388 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:53:21.398 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:53:21.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:21.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:21.558 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:21.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:21.558 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:21.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:53:21.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:21.558 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:21.558 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:21.558 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:53:21.748 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:53:21.748 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:21.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28332 150' command took 2 ms to send, 1382 ms to get response, and 1387 ms overall
17-03-17 21:53:21.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:21.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128893251008244. ------
17-03-17 21:53:21.748 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:21.748 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13518 mm
17-03-17 21:53:21.748 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:21.758 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:21.758 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:21.758 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:21.758 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:53:21.758 -07 000000547 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:53:21.758 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29530, sync = True, waitForSettling = False)
17-03-17 21:53:21.758 -07 000000576 INF: Z Motor: Moving to -0.135180 mm, started at -0.128893 mm, distance = -6.29 um
17-03-17 21:53:21.768 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:21.768 -07 000000476 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:53:21.778 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:53:21.778 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:21.778 -07 000000547 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:21.778 -07 000000547 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:53:21.778 -07 000000576 INF: FPGA: Xmit ZDACW 29530\n [Z Motor]
17-03-17 21:53:21.778 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:53:21.788 -07 000000576 INF: FPGA: 'ZDACW 29530' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:53:21.788 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:21.788 -07 000000512 INF: FPGA: Recv ZDACR 29530
17-03-17 21:53:21.798 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:21.798 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:21.798 -07 000000576 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:53:21.918 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:21.958 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:21.958 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:53:21.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:53:21.958 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:53:21.958 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:21.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 21:53:21.958 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:53:21.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:21.968 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:21.968 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:53:21.968 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:21.968 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:53:22.168 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:53:22.168 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:53:22.208 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:22.208 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:53:22.218 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:22.218 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:22.218 -07 000000547 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:53:22.218 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 21:53:23.168 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:23.168 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:53:23.178 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:23.178 -07 000000547 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:23.188 -07 000000547 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:23.188 -07 000000547 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:53:23.188 -07 000000547 INF: Y Motor: Moved to 74.0083 after 1436 ms (table move)
17-03-17 21:53:23.198 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135180 mm (DAC = 29530)
17-03-17 21:53:23.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.198 -07 000000480 INF: FPGA: Recv ZSGSRD 30329
17-03-17 21:53:23.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:53:23.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30332
17-03-17 21:53:23.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30334
17-03-17 21:53:23.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.228 -07 000000576 INF: FPGA: Recv ZSGSRD 30331
17-03-17 21:53:23.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.238 -07 000000012 INF: FPGA: Recv ZSGSRD 30321
17-03-17 21:53:23.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.248 -07 000000569 INF: FPGA: Recv ZSGSRD 30336
17-03-17 21:53:23.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.258 -07 000000458 INF: FPGA: Recv ZSGSRD 30337
17-03-17 21:53:23.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30329
17-03-17 21:53:23.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.278 -07 000000459 INF: FPGA: Recv ZSGSRD 30332
17-03-17 21:53:23.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:23.288 -07 000000431 INF: FPGA: Recv ZSGSRD 30334
17-03-17 21:53:23.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.298 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:23.298 -07 000000475 INF: FPGA: Recv ZPIEZORD 26390
17-03-17 21:53:23.308 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:23.308 -07 000000415 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -8.7 V.
17-03-17 21:53:23.308 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30332 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30332 (-134.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30321 (-134.3 uncal um), Max = 30337 (-134.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:53:23.308 -07 000000415 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30332, posNoise = 5, negNoise = 11
17-03-17 21:53:23.308 -07 000000415 INF: Z Motor: After move to -0.135180, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:23.308 -07 000000415 INF: Z Motor: Settle wait time = 1438 ms, measure time = 109 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:53:23.308 -07 000000415 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:23.358 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:53:23.358 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:23.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:23.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:23.358 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:23.358 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:23.358 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:23.358 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:23.358 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:23.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:23.368 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 21:53:23.368 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:23.378 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:53:23.378 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 21:53:23.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:23.428 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:53:23.628 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:53:23.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:53:23.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:23.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) start.
17-03-17 21:53:23.668 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:23.668 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:23.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 21:53:23.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618834472, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:53:23.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:23.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:53:23.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:53:23.768 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:23.768 -07 000000458 INF: Autofocus start
17-03-17 21:53:23.768 -07 000000458 INF: MeasureProfile start
17-03-17 21:53:23.768 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:23.778 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:23.778 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:23.788 -07 000000458 INF: MeasureProfile done
17-03-17 21:53:23.788 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:53:23.788 -07 000000458 INF: Autofocus finished
17-03-17 21:53:23.978 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:23.978 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:53:23.978 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135182554695028. ----------
17-03-17 21:53:23.978 -07 000000610 INF: Cycle	56	Tile	18	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:23.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28054, sync = True, waitForSettling = True)
17-03-17 21:53:23.988 -07 000000610 INF: Z Motor: Moving to -0.128423 mm, started at -0.135183 mm, distance = 6.76 um
17-03-17 21:53:23.988 -07 000000610 INF: FPGA: Xmit ZDACW 28054\n [Z Motor]
17-03-17 21:53:23.988 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:53:23.998 -07 000000610 INF: FPGA: 'ZDACW 28054' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:53:23.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:23.998 -07 000000475 INF: FPGA: Recv ZDACR 28054
17-03-17 21:53:24.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.158 -07 000000626 INF: FPGA: Recv ZSGSRD 29283
17-03-17 21:53:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.168 -07 000000608 INF: FPGA: Recv ZSGSRD 29278
17-03-17 21:53:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29279
17-03-17 21:53:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.188 -07 000000424 INF: FPGA: Recv ZSGSRD 29281
17-03-17 21:53:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.198 -07 000000458 INF: FPGA: Recv ZSGSRD 29284
17-03-17 21:53:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.208 -07 000000480 INF: FPGA: Recv ZSGSRD 29278
17-03-17 21:53:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.218 -07 000000547 INF: FPGA: Recv ZSGSRD 29281
17-03-17 21:53:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.228 -07 000000459 INF: FPGA: Recv ZSGSRD 29280
17-03-17 21:53:24.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.238 -07 000000626 INF: FPGA: Recv ZSGSRD 29281
17-03-17 21:53:24.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:24.248 -07 000000608 INF: FPGA: Recv ZSGSRD 29282
17-03-17 21:53:24.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:24.258 -07 000000382 INF: FPGA: Recv ZPIEZORD 25014
17-03-17 21:53:24.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:24.268 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.4 V.
17-03-17 21:53:24.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29281 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29281 (-127.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29278 (-127.6 uncal um), Max = 29284 (-127.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:53:24.268 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29281, posNoise = 3, negNoise = 3
17-03-17 21:53:24.268 -07 000000610 INF: Z Motor: After move to -0.128423, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:24.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:53:24.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:24.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:24.268 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:24.268 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:24.268 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:24.268 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:24.268 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:24.268 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:24.268 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:24.268 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:24.268 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:53:24.268 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:24.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:53:24.278 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:24.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:24.278 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:24.288 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:53:24.288 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:53:24.288 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:53:24.288 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:53:24.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28230 150\n [Camera]
17-03-17 21:53:24.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:53:24.928 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:24.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:24.928 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:24.928 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:24.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:53:24.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:24.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:24.938 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:24.938 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:24.938 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:53:25.118 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28230 825
17-03-17 21:53:25.268 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:25.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:53:25.318 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:53:25.318 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:25.318 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:53:25.318 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:53:25.318 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:25.318 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:25.318 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:53:25.318 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:25.328 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:53:25.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:25.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:25.488 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:25.488 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:25.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:25.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:25.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:53:25.488 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:25.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:25.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:53:25.678 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1379
17-03-17 21:53:25.678 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:25.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28230 150' command took 2 ms to send, 1381 ms to get response, and 1386 ms overall
17-03-17 21:53:25.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:53:25.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128430707734038. ------
17-03-17 21:53:25.678 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:25.678 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13485 mm
17-03-17 21:53:25.678 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:53:25.678 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:53:25.678 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29459, sync = True, waitForSettling = False)
17-03-17 21:53:25.678 -07 000000576 INF: Z Motor: Moving to -0.134855 mm, started at -0.128431 mm, distance = -6.42 um
17-03-17 21:53:25.678 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:53:25.678 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:25.688 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:25.688 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:25.688 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:53:25.698 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:25.698 -07 000000382 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:25.698 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:53:25.698 -07 000000382 INF: Y Motor: Moving 1351 steps-29
17-03-17 21:53:25.698 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:53:25.708 -07 000000576 INF: FPGA: Xmit ZDACW 29459\n [Z Motor]
17-03-17 21:53:25.708 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:53:25.718 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:53:25.718 -07 000000576 INF: FPGA: 'ZDACW 29459' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:53:25.738 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:25.738 -07 000000438 INF: FPGA: Recv ZDACR 29459
17-03-17 21:53:25.748 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:53:25.748 -07 000000576 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 21:53:25.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:53:25.878 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:53:25.878 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:25.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:53:25.878 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:53:25.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:25.888 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:25.888 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:53:25.888 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:53:25.888 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:53:25.898 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:53:25.898 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 210 ms overall
17-03-17 21:53:26.048 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.993549,
17-03-17 21:53:26.088 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:53:26.088 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:53:26.118 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:26.118 -07 000000458 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:53:26.128 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:26.128 -07 000000382 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:26.128 -07 000000382 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:53:26.128 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 21:53:26.918 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:26.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 55. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:27.078 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:27.078 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:53:27.088 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:27.088 -07 000000382 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:27.098 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:27.098 -07 000000382 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:53:27.098 -07 000000382 INF: Y Motor: Moved to 74.8325 after 1418 ms (table move)
17-03-17 21:53:27.108 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134855 mm (DAC = 29459)
17-03-17 21:53:27.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.108 -07 000000608 INF: FPGA: Recv ZSGSRD 30286
17-03-17 21:53:27.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:53:27.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30265
17-03-17 21:53:27.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.128 -07 000000547 INF: FPGA: Recv ZSGSRD 30271
17-03-17 21:53:27.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.138 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.138 -07 000000438 INF: FPGA: Recv ZSGSRD 30288
17-03-17 21:53:27.148 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.148 -07 000000480 INF: FPGA: Recv ZSGSRD 30281
17-03-17 21:53:27.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.158 -07 000000627 INF: FPGA: Recv ZSGSRD 30288
17-03-17 21:53:27.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30283
17-03-17 21:53:27.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.178 -07 000000547 INF: FPGA: Recv ZSGSRD 30284
17-03-17 21:53:27.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.188 -07 000000576 INF: FPGA: Recv ZSGSRD 30283
17-03-17 21:53:27.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:27.198 -07 000000012 INF: FPGA: Recv ZSGSRD 30274
17-03-17 21:53:27.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.208 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:27.208 -07 000000475 INF: FPGA: Recv ZPIEZORD 26343
17-03-17 21:53:27.218 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.218 -07 000000431 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -8.7 V.
17-03-17 21:53:27.218 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30280 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30283 (-134.1 uncal um), StdDev = 8 (0.1 uncal um), Range = 23 (0.1 uncal um), Min = 30265 (-134.0 uncal um), Max = 30288 (-134.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 15 (0.1 uncal um)
17-03-17 21:53:27.218 -07 000000431 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30280, posNoise = 8, negNoise = 15
17-03-17 21:53:27.218 -07 000000431 INF: Z Motor: After move to -0.134855, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:27.218 -07 000000431 INF: Z Motor: Settle wait time = 1422 ms, measure time = 109 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:53:27.218 -07 000000431 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:53:27.268 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:53:27.268 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:53:27.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:27.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:27.268 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:27.268 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:53:27.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:27.268 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:27.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:53:27.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:53:27.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:53:27.278 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:53:27.288 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:53:27.288 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:53:27.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:53:27.338 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:53:27.538 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:53:27.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:53:27.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:53:27.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2286110824, 0x0, 559484976) start.
17-03-17 21:53:27.568 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:53:27.568 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:53:27.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:53:27.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2286110824, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:53:27.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:27.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:53:27.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:53:27.768 -07 000000429 INF: Autofocus start
17-03-17 21:53:27.768 -07 000000429 INF: MeasureProfile start
17-03-17 21:53:27.768 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:53:27.768 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:53:27.778 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:27.778 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:53:27.778 -07 000000429 INF: MeasureProfile done
17-03-17 21:53:27.778 -07 000000429 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:53:27.778 -07 000000429 INF: Autofocus finished
17-03-17 21:53:27.978 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:53:27.978 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:53:27.978 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134848495663657. ----------
17-03-17 21:53:27.978 -07 000000610 INF: Cycle	56	Tile	19	Exposure Settings		A	440	G	212	T	212	C	440
17-03-17 21:53:27.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27966, sync = True, waitForSettling = True)
17-03-17 21:53:27.988 -07 000000610 INF: Z Motor: Moving to -0.128020 mm, started at -0.134848 mm, distance = 6.83 um
17-03-17 21:53:27.988 -07 000000610 INF: FPGA: Xmit ZDACW 27966\n [Z Motor]
17-03-17 21:53:27.988 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:53:27.998 -07 000000610 INF: FPGA: 'ZDACW 27966' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:27.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:53:27.998 -07 000000459 INF: FPGA: Recv ZDACR 27966
17-03-17 21:53:28.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:53:28.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.158 -07 000000476 INF: FPGA: Recv ZSGSRD 29215
17-03-17 21:53:28.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:28.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.168 -07 000000475 INF: FPGA: Recv ZSGSRD 29216
17-03-17 21:53:28.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.178 -07 000000627 INF: FPGA: Recv ZSGSRD 29218
17-03-17 21:53:28.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.188 -07 000000626 INF: FPGA: Recv ZSGSRD 29222
17-03-17 21:53:28.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29221
17-03-17 21:53:28.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29216
17-03-17 21:53:28.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29217
17-03-17 21:53:28.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29222
17-03-17 21:53:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29214
17-03-17 21:53:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:53:28.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29214
17-03-17 21:53:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:53:28.258 -07 000000576 INF: FPGA: Recv ZPIEZORD 24936
17-03-17 21:53:28.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:28.268 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.4 V.
17-03-17 21:53:28.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29218 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29216 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29214 (-127.2 uncal um), Max = 29222 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:53:28.268 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29218, posNoise = 4, negNoise = 4
17-03-17 21:53:28.268 -07 000000610 INF: Z Motor: After move to -0.128020, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:53:28.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:53:28.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:53:28.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:53:28.268 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:53:28.268 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:53:28.268 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:53:28.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:53:28.268 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:53:28.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:53:28.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:53:28.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:53:28.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:53:28.268 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:53:28.278 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:53:28.278 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:53:28.278 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:53:28.278 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:53:28.278 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:53:28.288 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:53:28.288 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:53:28.288 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:53:28.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 440 440 212 212 28143 150\n [Camera]
17-03-17 21:53:28.488 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:53:28.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 632
17-03-17 21:53:28.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 632
17-03-17 21:53:28.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:28.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:28.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:53:28.928 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 632
17-03-17 21:53:28.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 632
17-03-17 21:53:28.938 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:28.938 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:28.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:53:29.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28143 825
17-03-17 21:53:29.268 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 975
17-03-17 21:53:29.308 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:53:29.308 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:53:29.308 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:29.308 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:29.308 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:53:29.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:53:29.308 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:53:29.308 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:29.318 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:29.318 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:53:29.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1187
17-03-17 21:53:29.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1187
17-03-17 21:53:29.488 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:53:29.488 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:53:29.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:53:29.488 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1187
17-03-17 21:53:29.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1187
17-03-17 21:53:29.488 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:53:29.488 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:53:29.488 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 21:53:29.678 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1380
17-03-17 21:53:29.678 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:53:29.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 440 440 212 212 28143 150' command took 2 ms to send, 1381 ms to get response, and 1387 ms overall
17-03-17 21:53:29.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:53:29.868 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:53:29.868 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:29.878 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:53:29.878 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:53:29.878 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:53:29.878 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:53:29.878 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:53:29.878 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:53:29.878 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:53:29.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:53:29.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:53:29.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:53:29.968 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 21:53:29.978 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 21:53:29.978 -07 000000610 INF: Imaging Cycle 56: ScanTilesCommand Cycle 56 time end. Duration was 159876 ms.
17-03-17 21:53:29.978 -07 000000610 INF: =================== Cycle #56 ===================
17-03-17 21:53:29.978 -07 000000610 INF: ===================  ===================
17-03-17 21:53:29.978 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:53:29.988 -07 000000512 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 21:53:29.988 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:53:29.988 -07 000000547 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 21:53:29.988 -07 000000547 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 56, FrontChillerTemperature: 3.993549, FrontChillerHeatSinkTemperature: 0.472832, AmbientTemperature: 19.06182, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.88582, GreenLEDSensorTemperature: 26.25824, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 21:53:30.028 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.