17-03-17 21:53:30.088 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:53:30.088 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:53:30.088 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:53:30.088 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:30.088 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:53:30.098 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:53:30.098 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:30.098 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:53:30.098 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:53:30.098 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:53:30.208 -07 000000458 INF: FPGA: Recv YMVTO 154377 871
17-03-17 21:53:30.208 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:53:30.208 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 21:53:30.208 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 21:53:30.208 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.684 mm/sec
17-03-17 21:53:31.418 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.014009,
17-03-17 21:53:31.918 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=863, R2=882, Total=1745. Warn if over 250 bubbles per interval.
17-03-17 21:53:33.208 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:53:33.208 -07 000000512 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:53:33.218 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:53:33.218 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:53:33.228 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:53:33.228 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:53:33.228 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3144 ms
17-03-17 21:53:33.238 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 60° ===================
17-03-17 21:53:33.238 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:53:33.238 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:53:33.238 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:53:33.248 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:53:33.248 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:53:33.248 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 21:53:33.258 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:53:33.258 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 60° ===================
17-03-17 21:53:33.258 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:53:33.258 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:53:33.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:53:33.288 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:53:33.288 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:53:33.288 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:53:33.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:53:33.608 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:53:33.608 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:53:33.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:53:33.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:53:33.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:53:33.778 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:53:33.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:53:33.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:33.808 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:53:33.808 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:53:33.808 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:53:33.938 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:53:33.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:36.788 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.999021,
17-03-17 21:53:36.918 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 21:53:36.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=865, R2=884, Total=1749. Warn if over 250 bubbles per interval.
17-03-17 21:53:37.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:37.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:37.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:37.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:38.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:38.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:38.038 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:53:38.038 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:53:38.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:38.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:53:38.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:53:38.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:38.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:53:38.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:53:38.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:53:38.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:53:38.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:38.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:38.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:38.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:53:38.978 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:53:40.198 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:53:40.198 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:53:40.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:53:40.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:53:40.218 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:53:40.218 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:53:40.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:53:40.368 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:53:40.368 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:53:40.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:53:40.438 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:53:40.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:53:40.538 -07 000000610 INF: =================== Cycle #57, Pumping Reagent CMS (4) ===================
17-03-17 21:53:40.538 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:53:40.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:40.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:53:40.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:53:40.568 -07 000000610 INF: =================== Cycle #57, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:53:40.698 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:53:40.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:41.918 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:53:41.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=865, R2=885, Total=1750. Warn if over 250 bubbles per interval.
17-03-17 21:53:42.158 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.011254,
17-03-17 21:53:42.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:42.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:42.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:42.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:42.658 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:53:42.658 -07 000000610 INF: =================== Cycle #57, Pumping Reagent CMS (4) ===================
17-03-17 21:53:42.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:42.818 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:53:42.818 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:53:42.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:42.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:53:42.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:53:42.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:53:43.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:53:43.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:43.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:43.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:43.598 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:53:43.598 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:53:44.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:53:44.818 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:53:44.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:53:44.838 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:53:44.838 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:53:44.838 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:53:44.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:53:45.008 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:53:45.008 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:53:45.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:53:45.078 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:53:45.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:53:45.178 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:53:45.178 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:53:45.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:45.208 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:53:45.208 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:53:45.208 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:53:45.338 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:53:45.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:46.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:46.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:46.278 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:53:46.278 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:53:46.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:46.438 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:53:46.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:53:46.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:46.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:53:46.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:53:46.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:53:46.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:53:46.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:46.918 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-17 21:53:46.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=868, R2=889, Total=1757. Warn if over 250 bubbles per interval.
17-03-17 21:53:47.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:47.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:47.218 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:53:47.218 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:53:47.218 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:53:47.218 -07 000000438 INF: WaitCommand(10000) start
17-03-17 21:53:47.218 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:53:47.528 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.015368,
17-03-17 21:53:48.438 -07 000000012 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:53:48.438 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 21:53:48.478 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:53:48.478 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:53:48.608 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:53:48.648 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:50.178 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:50.208 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:50.628 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:53:50.658 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:53:50.658 -07 000000012 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:53:50.658 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:53:50.658 -07 000000012 INF: ===================  ===================
17-03-17 21:53:51.918 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:51.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=868, R2=889, Total=1757. Warn if over 250 bubbles per interval.
17-03-17 21:53:52.898 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.997626,
17-03-17 21:53:56.918 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:53:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=868, R2=889, Total=1757. Warn if over 250 bubbles per interval.
17-03-17 21:53:57.228 -07 000000438 INF: WaitCommand(10000) end
17-03-17 21:53:57.228 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:53:57.228 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:53:57.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:53:57.258 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:53:57.258 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:53:57.258 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:53:57.388 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:53:57.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:53:58.268 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.983999,
17-03-17 21:54:01.918 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:54:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=868, R2=889, Total=1757. Warn if over 250 bubbles per interval.
17-03-17 21:54:03.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:03.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:03.638 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.988112,
17-03-17 21:54:04.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:04.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:04.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:04.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:04.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:04.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:05.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:05.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:05.388 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:54:05.388 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:54:05.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:05.548 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:54:05.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:54:05.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:05.708 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:54:05.708 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:54:05.708 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:54:05.838 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:54:05.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:06.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:06.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:06.328 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:54:06.328 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:54:06.918 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-17 21:54:06.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=874, R2=893, Total=1767. Warn if over 250 bubbles per interval.
17-03-17 21:54:07.548 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:54:07.548 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:54:07.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:54:07.568 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:54:07.568 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:54:07.568 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:54:07.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:54:07.798 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:54:07.798 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:54:07.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:54:07.868 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:54:07.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:54:07.968 -07 000000610 INF: =================== Cycle #57, Pumping Reagent IMT (1) ===================
17-03-17 21:54:07.968 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:54:07.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:07.998 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:54:07.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:54:07.998 -07 000000610 INF: =================== Cycle #57, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:54:08.128 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:54:08.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:09.008 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.000345,
17-03-17 21:54:09.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:09.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:10.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:10.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:10.088 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:54:10.088 -07 000000610 INF: =================== Cycle #57, Pumping Reagent IMT (1) ===================
17-03-17 21:54:10.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:10.248 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:54:10.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:54:10.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:10.408 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:54:10.408 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:54:10.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:54:10.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:54:10.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:10.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:11.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:11.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:54:11.028 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:54:11.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 21:54:11.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=878, R2=896, Total=1774. Warn if over 250 bubbles per interval.
17-03-17 21:54:12.248 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:54:12.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:54:12.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:54:12.268 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:54:12.268 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:54:12.268 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:54:12.498 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:54:12.518 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:54:12.518 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:54:12.568 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:54:12.588 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:54:12.588 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:54:12.688 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:54:12.688 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:54:12.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:12.718 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:54:12.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:54:12.718 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:54:12.848 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:54:12.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:13.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:13.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:13.788 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:54:13.788 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:54:13.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:13.948 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:54:13.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:54:14.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:14.108 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:54:14.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:54:14.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:54:14.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:54:14.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:14.378 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.985358,
17-03-17 21:54:14.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:14.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:14.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:54:14.728 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:54:14.728 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 65° ===================
17-03-17 21:54:14.728 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:54:14.738 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:54:14.738 -07 000000627 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:54:14.748 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:54:14.748 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:54:14.748 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-17 21:54:14.758 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:54:14.758 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 65° ===================
17-03-17 21:54:14.758 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:54:14.758 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:54:16.918 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 21:54:16.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=880, R2=898, Total=1778. Warn if over 250 bubbles per interval.
17-03-17 21:54:19.748 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.005817,
17-03-17 21:54:21.918 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:54:21.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=880, R2=898, Total=1778. Warn if over 250 bubbles per interval.
17-03-17 21:54:25.118 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.973092,
17-03-17 21:54:26.918 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:54:26.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=880, R2=899, Total=1779. Warn if over 250 bubbles per interval.
17-03-17 21:54:30.488 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.985358,
17-03-17 21:54:31.918 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:54:31.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=880, R2=899, Total=1779. Warn if over 250 bubbles per interval.
17-03-17 21:54:35.868 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.975845,
17-03-17 21:54:36.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:54:36.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=880, R2=899, Total=1779. Warn if over 250 bubbles per interval.
17-03-17 21:54:41.228 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.989471,
17-03-17 21:54:41.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:54:41.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=880, R2=899, Total=1779. Warn if over 250 bubbles per interval.
17-03-17 21:54:44.768 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:54:44.768 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:54:44.768 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:54:44.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:44.888 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:54:44.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:54:44.888 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:54:45.018 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:54:45.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:45.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:45.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:45.628 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:54:45.628 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:54:45.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:45.788 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:54:45.788 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:54:45.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:54:45.948 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:54:45.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:54:45.948 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:54:46.078 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:54:46.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:46.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:46.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:46.568 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:54:46.568 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:54:46.568 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:54:46.568 -07 000000382 INF: WaitCommand(30000) start
17-03-17 21:54:46.568 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:54:46.598 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.999021,
17-03-17 21:54:46.918 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 21:54:46.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=899, Total=1780. Warn if over 250 bubbles per interval.
17-03-17 21:54:47.788 -07 000000547 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:54:47.788 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 21:54:47.818 -07 000000547 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:54:47.818 -07 000000547 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:54:47.948 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:54:47.988 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:50.328 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:50.358 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:54:50.778 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 21:54:50.808 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:54:50.808 -07 000000547 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:54:50.808 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:54:50.808 -07 000000547 INF: ===================  ===================
17-03-17 21:54:51.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:54:51.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=899, Total=1780. Warn if over 250 bubbles per interval.
17-03-17 21:54:51.968 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.014009,
17-03-17 21:54:56.918 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:54:56.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=900, Total=1781. Warn if over 250 bubbles per interval.
17-03-17 21:54:57.338 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.989471,
17-03-17 21:55:01.918 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:01.918 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=900, Total=1781. Warn if over 250 bubbles per interval.
17-03-17 21:55:02.708 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.98264,
17-03-17 21:55:06.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:06.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=900, Total=1781. Warn if over 250 bubbles per interval.
17-03-17 21:55:08.078 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.993549,
17-03-17 21:55:11.928 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=900, Total=1781. Warn if over 250 bubbles per interval.
17-03-17 21:55:14.278 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.015368,
17-03-17 21:55:16.578 -07 000000382 INF: WaitCommand(30000) end
17-03-17 21:55:16.578 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 22° ===================
17-03-17 21:55:16.578 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:55:16.578 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:55:16.578 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:55:16.588 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:55:16.588 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:55:16.588 -07 000000547 INF: FPGA: Recv TEC2EN 
17-03-17 21:55:16.598 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:16.598 -07 000000610 INF: =================== Cycle #57, Flow Cell Temp 22° ===================
17-03-17 21:55:16.598 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:55:16.598 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:55:16.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:55:16.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:16.638 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:55:16.638 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:55:16.638 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:55:16.768 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:55:16.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:16.928 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=881, R2=900, Total=1781. Warn if over 250 bubbles per interval.
17-03-17 21:55:19.638 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.009895,
17-03-17 21:55:19.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:19.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:20.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:20.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:20.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:20.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:20.868 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:55:20.868 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:55:20.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:21.028 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:55:21.028 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:55:21.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:21.188 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:55:21.188 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:55:21.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:55:21.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:55:21.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:21.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:21.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:21.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:55:21.808 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:55:21.918 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 5
17-03-17 21:55:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=5, R2=5, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=886, R2=905, Total=1791. Warn if over 250 bubbles per interval.
17-03-17 21:55:23.028 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:55:23.028 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:55:23.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:55:23.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:55:23.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:55:23.048 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:55:23.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:55:23.218 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:55:23.218 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:55:23.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:55:23.288 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:55:23.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:55:23.388 -07 000000610 INF: =================== Cycle #57, Pumping Reagent USM (2) ===================
17-03-17 21:55:23.388 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:55:23.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:23.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:55:23.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:55:23.418 -07 000000610 INF: =================== Cycle #57, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:55:23.548 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:55:23.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:25.008 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.996267,
17-03-17 21:55:25.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:25.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:25.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:25.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:25.508 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:55:25.508 -07 000000610 INF: =================== Cycle #57, Pumping Reagent USM (2) ===================
17-03-17 21:55:25.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:25.668 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:55:25.668 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:55:25.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:25.828 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:55:25.828 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:55:25.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:55:25.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:55:25.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:26.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:26.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:26.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:55:26.448 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:55:26.918 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 6
17-03-17 21:55:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=6, R2=4, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=909, Total=1801. Warn if over 250 bubbles per interval.
17-03-17 21:55:27.668 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:55:27.668 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:55:27.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:55:27.688 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:55:27.688 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:55:27.688 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:55:27.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:55:27.858 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:55:27.858 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:55:27.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:55:27.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:55:27.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:55:28.028 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:55:28.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:55:28.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:28.058 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:55:28.058 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:55:28.058 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:55:28.188 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:55:28.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:29.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:29.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:29.128 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:55:29.128 -07 000000610 INF: =================== Cycle #57, Pumping Reagent PR2 (3) ===================
17-03-17 21:55:29.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:29.288 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:55:29.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:55:29.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:55:29.448 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:55:29.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:55:29.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:55:29.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:55:29.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:30.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:30.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:30.068 -07 000000610 INF: LanePump: Waited 461 ms for pump motion to complete
17-03-17 21:55:30.068 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:55:30.068 -07 000000431 INF: WaitCommand(10000) start
17-03-17 21:55:30.068 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:55:30.068 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:55:30.378 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.007176,
17-03-17 21:55:31.288 -07 000000012 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:55:31.288 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 21:55:31.428 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:55:31.428 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:55:31.558 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:55:31.598 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:31.918 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 21:55:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:55:33.128 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:33.158 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:55:33.578 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:55:33.608 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:55:33.608 -07 000000012 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 21:55:33.608 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:55:33.608 -07 000000012 INF: ===================  ===================
17-03-17 21:55:35.748 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.026244,
17-03-17 21:55:36.928 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:36.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:55:40.078 -07 000000431 INF: WaitCommand(10000) end
17-03-17 21:55:40.078 -07 000000610 INF: =================== Cycle #57, Imaging ===================
17-03-17 21:55:40.078 -07 000000610 INF: Imaging Cycle 57: ScanTilesCommand Cycle 57 time start.
17-03-17 21:55:40.078 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:55:40.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:55:40.108 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:55:40.108 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:55:40.108 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:55:40.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:55:40.428 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:55:40.428 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:55:40.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:55:40.498 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:55:40.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:40.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:40.498 -07 000000458 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:55:40.498 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:40.498 -07 000000458 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:55:40.498 -07 000000012 INF: FPGA: Recv EXLED1ON 
17-03-17 21:55:40.508 -07 000000458 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:55:40.508 -07 000000458 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:55:40.508 -07 000000475 INF: FPGA: Recv EXLED1ADCR 23124
17-03-17 21:55:40.518 -07 000000458 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:40.518 -07 000000458 INF: RedLED: Using Red data: Photodiode ADC 23124 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-17 21:55:40.518 -07 000000458 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:55:40.518 -07 000000431 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:55:40.528 -07 000000458 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:40.528 -07 000000458 INF: RedLED: LED was on for 19 ms
17-03-17 21:55:40.528 -07 000000458 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 21:55:40.528 -07 000000458 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:55:40.528 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:40.528 -07 000000458 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:55:40.528 -07 000000475 INF: FPGA: Recv EXLED2ON 
17-03-17 21:55:40.538 -07 000000458 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:55:40.538 -07 000000458 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:55:40.538 -07 000000502 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 21:55:40.548 -07 000000458 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:40.548 -07 000000458 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 21:55:40.548 -07 000000458 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:55:40.548 -07 000000012 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:55:40.558 -07 000000458 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:40.558 -07 000000458 INF: GreenLED: LED was on for 19 ms
17-03-17 21:55:40.558 -07 000000458 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:55:40.558 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:55:40.558 -07 000000012 INF: FPGA: Recv EMCUR 
17-03-17 21:55:40.568 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:55:40.568 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:55:41.068 -07 000000415 INF: FPGA: Recv EMOUT
17-03-17 21:55:41.068 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:55:41.068 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:55:41.068 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-17 21:55:41.078 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:55:41.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:55:41.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.128025982369107. ------
17-03-17 21:55:41.078 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:41.078 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17947 mm
17-03-17 21:55:41.078 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:55:41.078 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:41.078 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39205, sync = True, waitForSettling = False)
17-03-17 21:55:41.078 -07 000000576 INF: Z Motor: Moving to -0.179469 mm, started at -0.128026 mm, distance = -51.44 um
17-03-17 21:55:41.088 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:55:41.088 -07 000000576 INF: FPGA: Xmit ZDACW 39205\n [Z Motor]
17-03-17 21:55:41.088 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:55:41.088 -07 000000627 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 21:55:41.088 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 21:55:41.098 -07 000000576 INF: FPGA: 'ZDACW 39205' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:41.108 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:55:41.108 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.99219,
17-03-17 21:55:41.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:41.118 -07 000000458 INF: FPGA: Recv YRDPOS 154379
17-03-17 21:55:41.128 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:41.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:55:41.128 -07 000000627 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:41.128 -07 000000502 INF: FPGA: Recv ZDACR 39205
17-03-17 21:55:41.128 -07 000000627 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:55:41.128 -07 000000627 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:55:41.138 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:55:41.138 -07 000000576 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:55:41.148 -07 000000627 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:55:41.308 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:55:41.308 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:55:41.928 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:41.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:55:42.828 -07 000000415 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 21:55:42.828 -07 000000627 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 21:55:42.828 -07 000000627 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:55:42.828 -07 000000627 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-17 21:55:42.828 -07 000000627 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 21:55:45.678 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:45.678 -07 000000382 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:55:45.688 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:45.688 -07 000000627 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:45.708 -07 000000627 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:55:45.708 -07 000000627 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:55:45.708 -07 000000627 INF: Y Motor: Moved to 59.9106 after 4624 ms
17-03-17 21:55:45.708 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179469 mm (DAC = 39205)
17-03-17 21:55:45.708 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.718 -07 000000475 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:55:45.718 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:55:45.718 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.718 -07 000000431 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:55:45.728 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:55:45.728 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.728 -07 000000576 INF: FPGA: Recv ZSGSRD 37223
17-03-17 21:55:45.738 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.738 -07 000000431 INF: FPGA: Recv ZSGSRD 37226
17-03-17 21:55:45.748 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.748 -07 000000576 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:55:45.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.758 -07 000000475 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:55:45.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.768 -07 000000475 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:55:45.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.778 -07 000000431 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:55:45.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.788 -07 000000576 INF: FPGA: Recv ZSGSRD 37224
17-03-17 21:55:45.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:45.798 -07 000000475 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:55:45.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.808 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:45.808 -07 000000502 INF: FPGA: Recv ZPIEZORD 33736
17-03-17 21:55:45.818 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:45.818 -07 000000012 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -7.8 V.
17-03-17 21:55:45.818 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37227 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37227 (-178.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37223 (-178.6 uncal um), Max = 37232 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:55:45.818 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37227, posNoise = 5, negNoise = 4
17-03-17 21:55:45.818 -07 000000012 INF: Z Motor: After move to -0.179469, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:45.818 -07 000000012 INF: Z Motor: Settle wait time = 4628 ms, measure time = 102 ms (allowed 150 ms), total time = 4730 ms
17-03-17 21:55:45.818 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:55:45.868 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4783 ms
17-03-17 21:55:45.868 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:55:45.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:45.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:45.868 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:45.868 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:45.868 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:55:45.868 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:45.868 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:55:45.868 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:55:45.898 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:55:45.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:55:45.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:55:45.898 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:55:45.908 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:55:45.908 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 21:55:45.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:55:45.958 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:55:46.158 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:55:46.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:55:46.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:55:46.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:55:46.198 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:55:46.198 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:55:46.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:55:46.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:55:46.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:46.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:55:46.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:55:46.398 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:46.398 -07 000000475 INF: Image SNR check: start
17-03-17 21:55:46.398 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:46.408 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:55:46.408 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:55:46.408 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=62.39]
17-03-17 21:55:46.408 -07 000000475 INF: Autofocus start
17-03-17 21:55:46.408 -07 000000475 INF: MeasureProfile start
17-03-17 21:55:46.428 -07 000000475 INF: MeasureProfile done
17-03-17 21:55:46.428 -07 000000475 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:55:46.428 -07 000000475 INF: Autofocus finished
17-03-17 21:55:46.508 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.993549,
17-03-17 21:55:46.608 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:55:46.608 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:55:46.608 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.17947749741247. ----------
17-03-17 21:55:46.608 -07 000000610 INF: Cycle	57	Tile	1	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:55:46.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37755, sync = True, waitForSettling = True)
17-03-17 21:55:46.618 -07 000000610 INF: Z Motor: Moving to -0.172831 mm, started at -0.179477 mm, distance = 6.65 um
17-03-17 21:55:46.618 -07 000000610 INF: FPGA: Xmit ZDACW 37755\n [Z Motor]
17-03-17 21:55:46.618 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:55:46.628 -07 000000610 INF: FPGA: 'ZDACW 37755' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:46.628 -07 000000502 INF: FPGA: Recv ZDACR 37755
17-03-17 21:55:46.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:55:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.788 -07 000000502 INF: FPGA: Recv ZSGSRD 36193
17-03-17 21:55:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:46.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.798 -07 000000475 INF: FPGA: Recv ZSGSRD 36197
17-03-17 21:55:46.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.808 -07 000000576 INF: FPGA: Recv ZSGSRD 36196
17-03-17 21:55:46.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.818 -07 000000431 INF: FPGA: Recv ZSGSRD 36193
17-03-17 21:55:46.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.828 -07 000000012 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:55:46.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.838 -07 000000012 INF: FPGA: Recv ZSGSRD 36196
17-03-17 21:55:46.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.848 -07 000000431 INF: FPGA: Recv ZSGSRD 36198
17-03-17 21:55:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.858 -07 000000502 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:55:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.868 -07 000000576 INF: FPGA: Recv ZSGSRD 36194
17-03-17 21:55:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:46.878 -07 000000012 INF: FPGA: Recv ZSGSRD 36194
17-03-17 21:55:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:46.888 -07 000000475 INF: FPGA: Recv ZPIEZORD 32361
17-03-17 21:55:46.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:46.898 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.5 V.
17-03-17 21:55:46.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36194 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36194 (-172.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36191 (-171.9 uncal um), Max = 36198 (-172.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:55:46.898 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36194, posNoise = 4, negNoise = 3
17-03-17 21:55:46.898 -07 000000610 INF: Z Motor: After move to -0.172831, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:46.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:55:46.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:46.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:46.898 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:46.898 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:46.898 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:55:46.898 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:46.898 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:55:46.898 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:55:46.898 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:55:46.898 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:55:46.898 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 21:55:46.898 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:55:46.908 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:55:46.908 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:55:46.918 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:55:46.918 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:55:46.928 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:46.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:55:46.928 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:55:46.928 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:55:46.928 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:55:46.928 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:55:46.938 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:55:46.938 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-17 21:55:46.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37932 150\n [Camera]
17-03-17 21:55:47.148 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:55:47.588 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:55:47.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:55:47.588 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:47.588 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:47.588 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 21:55:47.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:55:47.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:55:47.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:47.588 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:47.588 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 21:55:47.778 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37932 827
17-03-17 21:55:47.928 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:55:47.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:55:47.988 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:55:47.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:47.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:55:47.988 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:55:47.988 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:47.998 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:55:47.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:55:47.998 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:55:48.008 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:55:48.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:55:48.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:55:48.138 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:48.138 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:48.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 21:55:48.148 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:55:48.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:55:48.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:48.148 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:48.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:55:48.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:55:48.338 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:55:48.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37932 150' command took 2 ms to send, 1382 ms to get response, and 1392 ms overall
17-03-17 21:55:48.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:55:48.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172841286270031. ------
17-03-17 21:55:48.338 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17917 mm
17-03-17 21:55:48.338 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:55:48.338 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:48.338 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:55:48.338 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:55:48.348 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:48.348 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:48.348 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:55:48.348 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 39140, sync = True, waitForSettling = False)
17-03-17 21:55:48.348 -07 000000475 INF: Z Motor: Moving to -0.179171 mm, started at -0.172841 mm, distance = -6.33 um
17-03-17 21:55:48.348 -07 000000415 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:55:48.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:48.358 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:48.358 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:55:48.358 -07 000000012 INF: Y Motor: Moving 1331 steps2
17-03-17 21:55:48.358 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:55:48.368 -07 000000475 INF: FPGA: Xmit ZDACW 39140\n [Z Motor]
17-03-17 21:55:48.368 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:55:48.378 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:55:48.378 -07 000000475 INF: FPGA: 'ZDACW 39140' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:55:48.388 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:48.388 -07 000000502 INF: FPGA: Recv ZDACR 39140
17-03-17 21:55:48.398 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:55:48.398 -07 000000475 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:55:48.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 21:55:48.548 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:55:48.548 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:48.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:55:48.548 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:55:48.548 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:48.558 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:55:48.558 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:55:48.558 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 21:55:48.558 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 210 ms overall
17-03-17 21:55:48.558 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:55:48.568 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 21:55:48.748 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:55:48.748 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:55:48.788 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:48.788 -07 000000431 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:55:48.798 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:48.798 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:48.798 -07 000000012 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:55:48.798 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 21:55:49.748 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:49.748 -07 000000576 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:55:49.758 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:49.758 -07 000000012 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:49.778 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:55:49.778 -07 000000012 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:55:49.778 -07 000000012 INF: Y Motor: Moved to 60.7324 after 1435 ms (table move)
17-03-17 21:55:49.778 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179171 mm (DAC = 39140)
17-03-17 21:55:49.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.788 -07 000000576 INF: FPGA: Recv ZSGSRD 37186
17-03-17 21:55:49.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:55:49.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.788 -07 000000431 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:55:49.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:55:49.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.798 -07 000000431 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:55:49.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.808 -07 000000012 INF: FPGA: Recv ZSGSRD 37180
17-03-17 21:55:49.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.818 -07 000000012 INF: FPGA: Recv ZSGSRD 37184
17-03-17 21:55:49.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.828 -07 000000012 INF: FPGA: Recv ZSGSRD 37182
17-03-17 21:55:49.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.838 -07 000000431 INF: FPGA: Recv ZSGSRD 37186
17-03-17 21:55:49.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.848 -07 000000012 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:55:49.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.858 -07 000000576 INF: FPGA: Recv ZSGSRD 37177
17-03-17 21:55:49.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:49.868 -07 000000431 INF: FPGA: Recv ZSGSRD 37183
17-03-17 21:55:49.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.878 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:49.878 -07 000000012 INF: FPGA: Recv ZPIEZORD 33652
17-03-17 21:55:49.888 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:49.888 -07 000000382 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.972 V. Piezo Error = -7.8 V.
17-03-17 21:55:49.888 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37182 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37182 (-178.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37177 (-178.3 uncal um), Max = 37186 (-178.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:55:49.888 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37182, posNoise = 4, negNoise = 5
17-03-17 21:55:49.888 -07 000000382 INF: Z Motor: After move to -0.179171, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:49.888 -07 000000382 INF: Z Motor: Settle wait time = 1435 ms, measure time = 102 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:55:49.888 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:55:49.938 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:55:49.938 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:55:49.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:49.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:49.938 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:49.938 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:49.938 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:55:49.938 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:49.938 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:55:49.938 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:55:49.948 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:55:49.948 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:55:49.958 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:55:49.958 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:55:49.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:55:50.008 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:55:50.208 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:55:50.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:55:50.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:55:50.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 21:55:50.238 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:55:50.248 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:55:50.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:55:50.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:55:50.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:50.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:55:50.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:55:50.348 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:50.348 -07 000000576 INF: Autofocus start
17-03-17 21:55:50.348 -07 000000576 INF: MeasureProfile start
17-03-17 21:55:50.348 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:50.358 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:55:50.358 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:55:50.358 -07 000000576 INF: MeasureProfile done
17-03-17 21:55:50.358 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:55:50.358 -07 000000576 INF: Autofocus finished
17-03-17 21:55:50.558 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:55:50.558 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:55:50.558 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.179188407866091. ----------
17-03-17 21:55:50.558 -07 000000610 INF: Cycle	57	Tile	2	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:55:50.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37637, sync = True, waitForSettling = True)
17-03-17 21:55:50.568 -07 000000610 INF: Z Motor: Moving to -0.172291 mm, started at -0.179188 mm, distance = 6.90 um
17-03-17 21:55:50.568 -07 000000610 INF: FPGA: Xmit ZDACW 37637\n [Z Motor]
17-03-17 21:55:50.568 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:55:50.578 -07 000000610 INF: FPGA: 'ZDACW 37637' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:55:50.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:50.578 -07 000000431 INF: FPGA: Recv ZDACR 37637
17-03-17 21:55:50.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:55:50.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.738 -07 000000431 INF: FPGA: Recv ZSGSRD 36113
17-03-17 21:55:50.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.748 -07 000000382 INF: FPGA: Recv ZSGSRD 36110
17-03-17 21:55:50.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.758 -07 000000431 INF: FPGA: Recv ZSGSRD 36104
17-03-17 21:55:50.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.768 -07 000000012 INF: FPGA: Recv ZSGSRD 36110
17-03-17 21:55:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36115
17-03-17 21:55:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.788 -07 000000382 INF: FPGA: Recv ZSGSRD 36104
17-03-17 21:55:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.798 -07 000000576 INF: FPGA: Recv ZSGSRD 36104
17-03-17 21:55:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36109
17-03-17 21:55:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.818 -07 000000576 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:55:50.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:50.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:55:50.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:50.838 -07 000000382 INF: FPGA: Recv ZPIEZORD 32241
17-03-17 21:55:50.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:50.848 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.6 V.
17-03-17 21:55:50.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36108 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36108 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36104 (-171.4 uncal um), Max = 36115 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:55:50.848 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36108, posNoise = 7, negNoise = 4
17-03-17 21:55:50.848 -07 000000610 INF: Z Motor: After move to -0.172291, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:50.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:55:50.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:50.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:50.848 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:50.848 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:55:50.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:55:50.848 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:50.848 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:55:50.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:50.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:55:50.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:55:50.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:55:50.848 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:55:50.858 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:55:50.858 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:55:50.858 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:55:50.858 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:55:50.868 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:55:50.868 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:55:50.868 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:55:50.868 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:55:50.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37813 150\n [Camera]
17-03-17 21:55:51.078 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:55:51.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:55:51.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:55:51.518 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:51.518 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:51.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:55:51.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:55:51.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:55:51.518 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:51.518 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:51.518 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:55:51.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37813 827
17-03-17 21:55:51.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:55:51.868 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.983999,
17-03-17 21:55:51.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:55:51.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:55:51.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:51.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:55:51.918 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:55:51.918 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:51.918 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:55:51.918 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:55:51.928 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:51.928 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:55:51.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:55:51.928 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:55:52.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:55:52.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:55:52.068 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:52.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:55:52.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:55:52.208 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:52.208 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:52.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:55:52.208 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:52.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:55:52.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:55:52.268 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:55:52.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37813 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 21:55:52.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:55:52.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.17228880402584. ------
17-03-17 21:55:52.268 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:52.268 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17864 mm
17-03-17 21:55:52.268 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:55:52.268 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:55:52.268 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:55:52.268 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:52.278 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:55:52.278 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:52.278 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 39024, sync = True, waitForSettling = False)
17-03-17 21:55:52.278 -07 000000458 INF: Z Motor: Moving to -0.178640 mm, started at -0.172289 mm, distance = -6.35 um
17-03-17 21:55:52.278 -07 000000382 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:55:52.288 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:55:52.288 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:52.288 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:55:52.288 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:55:52.288 -07 000000502 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:55:52.298 -07 000000458 INF: FPGA: Xmit ZDACW 39024\n [Z Motor]
17-03-17 21:55:52.308 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:55:52.608 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:55:52.608 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:55:52.608 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:52.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:55:52.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:55:52.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:52.608 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:55:52.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:55:52.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 21:55:52.618 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:55:52.628 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:55:52.628 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:55:52.628 -07 000000458 INF: FPGA: 'ZDACW 39024' command took 0 ms to send, 323 ms to get response, and 352 ms overall
17-03-17 21:55:52.628 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 333 ms to get response, and 353 ms overall
17-03-17 21:55:52.628 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:52.628 -07 000000576 INF: FPGA: Recv ZDACR 39024
17-03-17 21:55:52.638 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:55:52.638 -07 000000458 INF: Z Motor: MoveAbsStepped took 359 ms (did NOT wait for settling yet))
17-03-17 21:55:52.678 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:55:52.678 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:55:52.718 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:52.728 -07 000000458 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:55:52.728 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:55:52.728 -07 000000502 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:52.728 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:55:52.728 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 21:55:53.678 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:53.678 -07 000000627 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:55:53.688 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:53.688 -07 000000502 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:53.708 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:55:53.708 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:55:53.708 -07 000000502 INF: Y Motor: Moved to 61.5635 after 1436 ms (table move)
17-03-17 21:55:53.708 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178640 mm (DAC = 39024)
17-03-17 21:55:53.708 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.718 -07 000000627 INF: FPGA: Recv ZSGSRD 37105
17-03-17 21:55:53.718 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:55:53.718 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.718 -07 000000627 INF: FPGA: Recv ZSGSRD 37102
17-03-17 21:55:53.728 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:55:53.728 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.728 -07 000000627 INF: FPGA: Recv ZSGSRD 37099
17-03-17 21:55:53.738 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.738 -07 000000458 INF: FPGA: Recv ZSGSRD 37089
17-03-17 21:55:53.748 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.748 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.748 -07 000000458 INF: FPGA: Recv ZSGSRD 37103
17-03-17 21:55:53.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.758 -07 000000627 INF: FPGA: Recv ZSGSRD 37107
17-03-17 21:55:53.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.768 -07 000000458 INF: FPGA: Recv ZSGSRD 37101
17-03-17 21:55:53.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.778 -07 000000502 INF: FPGA: Recv ZSGSRD 37098
17-03-17 21:55:53.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.788 -07 000000458 INF: FPGA: Recv ZSGSRD 37099
17-03-17 21:55:53.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:55:53.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:53.798 -07 000000627 INF: FPGA: Recv ZSGSRD 37091
17-03-17 21:55:53.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.808 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:53.808 -07 000000576 INF: FPGA: Recv ZPIEZORD 33546
17-03-17 21:55:53.818 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:53.818 -07 000000012 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -7.9 V.
17-03-17 21:55:53.818 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37099 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37100 (-177.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37089 (-177.7 uncal um), Max = 37107 (-177.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:55:53.818 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37099, posNoise = 8, negNoise = 10
17-03-17 21:55:53.818 -07 000000012 INF: Z Motor: After move to -0.178640, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:53.818 -07 000000012 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:55:53.818 -07 000000012 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:55:53.868 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:55:53.868 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:55:53.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:53.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:53.868 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:53.868 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:53.868 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:55:53.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:53.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:55:53.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:55:53.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:55:53.878 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:55:53.888 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:55:53.888 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:55:53.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:55:53.938 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:55:54.138 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 21:55:54.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 21:55:54.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:55:54.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 21:55:54.178 -07 000000627 INF: FPGA: Recv @CAMSNAP 282
17-03-17 21:55:54.178 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:55:54.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 21:55:54.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:55:54.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:54.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:55:54.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:55:54.278 -07 000000431 INF: Autofocus start
17-03-17 21:55:54.278 -07 000000431 INF: MeasureProfile start
17-03-17 21:55:54.278 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:54.278 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:54.288 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:55:54.288 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:55:54.288 -07 000000431 INF: MeasureProfile done
17-03-17 21:55:54.288 -07 000000431 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:55:54.288 -07 000000431 INF: Autofocus finished
17-03-17 21:55:54.488 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:55:54.488 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:55:54.488 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178655198258325. ----------
17-03-17 21:55:54.488 -07 000000610 INF: Cycle	57	Tile	3	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:55:54.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37503, sync = True, waitForSettling = True)
17-03-17 21:55:54.498 -07 000000610 INF: Z Motor: Moving to -0.171678 mm, started at -0.178655 mm, distance = 6.98 um
17-03-17 21:55:54.498 -07 000000610 INF: FPGA: Xmit ZDACW 37503\n [Z Motor]
17-03-17 21:55:54.498 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:55:54.508 -07 000000610 INF: FPGA: 'ZDACW 37503' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:54.508 -07 000000431 INF: FPGA: Recv ZDACR 37503
17-03-17 21:55:54.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:55:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.668 -07 000000415 INF: FPGA: Recv ZSGSRD 36014
17-03-17 21:55:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.678 -07 000000415 INF: FPGA: Recv ZSGSRD 36017
17-03-17 21:55:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.688 -07 000000415 INF: FPGA: Recv ZSGSRD 36014
17-03-17 21:55:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.698 -07 000000415 INF: FPGA: Recv ZSGSRD 36007
17-03-17 21:55:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.708 -07 000000433 INF: FPGA: Recv ZSGSRD 36018
17-03-17 21:55:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.718 -07 000000627 INF: FPGA: Recv ZSGSRD 36017
17-03-17 21:55:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.728 -07 000000627 INF: FPGA: Recv ZSGSRD 36014
17-03-17 21:55:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36011
17-03-17 21:55:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.748 -07 000000627 INF: FPGA: Recv ZSGSRD 36011
17-03-17 21:55:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:54.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36020
17-03-17 21:55:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:54.768 -07 000000627 INF: FPGA: Recv ZPIEZORD 32110
17-03-17 21:55:54.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:54.778 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -8.6 V.
17-03-17 21:55:54.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36014 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36007 (-170.8 uncal um), Max = 36020 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:55:54.778 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36014, posNoise = 6, negNoise = 7
17-03-17 21:55:54.778 -07 000000610 INF: Z Motor: After move to -0.171678, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:54.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:55:54.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:54.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:54.778 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:54.778 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:55:54.778 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:55:54.778 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:55:54.778 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:54.778 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:54.778 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:55:54.778 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:55:54.778 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:55:54.778 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:55:54.788 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:55:54.788 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:55:54.788 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:55:54.788 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:55:54.798 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:55:54.798 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:55:54.798 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:55:54.798 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:55:54.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37680 150\n [Camera]
17-03-17 21:55:54.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:55:55.438 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 21:55:55.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 21:55:55.438 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:55.448 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 21:55:55.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 21:55:55.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:55.448 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:55.448 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 21:55:55.448 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:55.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:55:55.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37680 827
17-03-17 21:55:55.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:55:55.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:55:55.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:55:55.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:55.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:55:55.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:55:55.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:55:55.828 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:55:55.828 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:55.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:55:55.838 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:55:55.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:55:56.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:55:56.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:55:56.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:55:56.108 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:56.108 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:56.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:56.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:55:56.118 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:56.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1403846816, 0x0, 391868352) start.
17-03-17 21:55:56.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:55:56.188 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:55:56.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37680 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-17 21:55:56.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:55:56.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171684928084514. ------
17-03-17 21:55:56.188 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:56.188 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17800 mm
17-03-17 21:55:56.188 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:55:56.198 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:55:56.198 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:55:56.198 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:56.198 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:56.198 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:55:56.198 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38885, sync = True, waitForSettling = False)
17-03-17 21:55:56.198 -07 000000415 INF: Z Motor: Moving to -0.178004 mm, started at -0.171685 mm, distance = -6.32 um
17-03-17 21:55:56.198 -07 000000627 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:55:56.208 -07 000000415 INF: FPGA: Xmit ZDACW 38885\n [Z Motor]
17-03-17 21:55:56.208 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:56.208 -07 000000502 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:56.208 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:55:56.208 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:55:56.208 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:55:56.218 -07 000000415 INF: FPGA: 'ZDACW 38885' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:55:56.218 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:55:56.228 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:55:56.238 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:56.238 -07 000000576 INF: FPGA: Recv ZDACR 38885
17-03-17 21:55:56.248 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:55:56.248 -07 000000415 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:55:56.418 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:55:56.418 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 21:55:56.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:55:56.518 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:55:56.518 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:56.518 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1403846816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:55:56.518 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:55:56.518 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:56.518 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:55:56.518 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:55:56.518 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:55:56.528 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 21:55:56.598 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 21:55:56.598 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:55:56.638 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:56.638 -07 000000486 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:55:56.648 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:55:56.648 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:56.648 -07 000000502 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:55:56.648 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 21:55:56.928 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:55:56.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:55:57.228 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.016692,
17-03-17 21:55:57.598 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:55:57.598 -07 000000486 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:55:57.608 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.608 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:55:57.628 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:55:57.628 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:55:57.628 -07 000000502 INF: Y Motor: Moved to 62.3950 after 1433 ms (table move)
17-03-17 21:55:57.628 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178004 mm (DAC = 38885)
17-03-17 21:55:57.628 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.628 -07 000000433 INF: FPGA: Recv ZSGSRD 37002
17-03-17 21:55:57.638 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:55:57.638 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.638 -07 000000502 INF: FPGA: Recv ZSGSRD 37000
17-03-17 21:55:57.648 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.648 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.648 -07 000000486 INF: FPGA: Recv ZSGSRD 36997
17-03-17 21:55:57.658 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.658 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.658 -07 000000433 INF: FPGA: Recv ZSGSRD 36995
17-03-17 21:55:57.668 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.668 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.668 -07 000000486 INF: FPGA: Recv ZSGSRD 37009
17-03-17 21:55:57.678 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.678 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.678 -07 000000433 INF: FPGA: Recv ZSGSRD 36986
17-03-17 21:55:57.688 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.688 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.688 -07 000000382 INF: FPGA: Recv ZSGSRD 37001
17-03-17 21:55:57.698 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.698 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.698 -07 000000486 INF: FPGA: Recv ZSGSRD 36988
17-03-17 21:55:57.708 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.708 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.708 -07 000000382 INF: FPGA: Recv ZSGSRD 36998
17-03-17 21:55:57.718 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.718 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:57.718 -07 000000486 INF: FPGA: Recv ZSGSRD 36996
17-03-17 21:55:57.728 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:55:57.728 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:57.728 -07 000000502 INF: FPGA: Recv ZPIEZORD 33421
17-03-17 21:55:57.738 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:57.738 -07 000000012 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -7.9 V.
17-03-17 21:55:57.738 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36997 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36998 (-177.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36986 (-177.0 uncal um), Max = 37009 (-177.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:55:57.738 -07 000000012 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36997, posNoise = 12, negNoise = 11
17-03-17 21:55:57.738 -07 000000012 INF: Z Motor: After move to -0.178004, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:57.738 -07 000000012 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:55:57.738 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:55:57.788 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:55:57.788 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:55:57.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:57.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:57.788 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:57.788 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:57.788 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:55:57.788 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:57.788 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:55:57.788 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:55:57.798 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:55:57.798 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:55:57.808 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:55:57.808 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:55:57.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:55:57.858 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:55:58.058 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:55:58.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:55:58.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:55:58.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 21:55:58.098 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:55:58.098 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 21:55:58.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:55:58.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:55:58.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:58.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:55:58.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:55:58.198 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:55:58.198 -07 000000502 INF: Autofocus start
17-03-17 21:55:58.198 -07 000000502 INF: MeasureProfile start
17-03-17 21:55:58.198 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:55:58.208 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:55:58.208 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:55:58.218 -07 000000502 INF: MeasureProfile done
17-03-17 21:55:58.218 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:55:58.218 -07 000000502 INF: Autofocus finished
17-03-17 21:55:58.408 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:55:58.408 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:55:58.408 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177999928619865. ----------
17-03-17 21:55:58.418 -07 000000610 INF: Cycle	57	Tile	4	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:55:58.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37400, sync = True, waitForSettling = True)
17-03-17 21:55:58.418 -07 000000610 INF: Z Motor: Moving to -0.171206 mm, started at -0.178000 mm, distance = 6.79 um
17-03-17 21:55:58.418 -07 000000610 INF: FPGA: Xmit ZDACW 37400\n [Z Motor]
17-03-17 21:55:58.418 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:55:58.428 -07 000000610 INF: FPGA: 'ZDACW 37400' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:55:58.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:55:58.428 -07 000000431 INF: FPGA: Recv ZDACR 37400
17-03-17 21:55:58.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:55:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.588 -07 000000433 INF: FPGA: Recv ZSGSRD 35942
17-03-17 21:55:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:55:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.598 -07 000000012 INF: FPGA: Recv ZSGSRD 35943
17-03-17 21:55:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.608 -07 000000486 INF: FPGA: Recv ZSGSRD 35937
17-03-17 21:55:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35940
17-03-17 21:55:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.628 -07 000000431 INF: FPGA: Recv ZSGSRD 35943
17-03-17 21:55:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.638 -07 000000012 INF: FPGA: Recv ZSGSRD 35940
17-03-17 21:55:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35945
17-03-17 21:55:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.658 -07 000000458 INF: FPGA: Recv ZSGSRD 35945
17-03-17 21:55:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.668 -07 000000382 INF: FPGA: Recv ZSGSRD 35939
17-03-17 21:55:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:55:58.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35934
17-03-17 21:55:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:55:58.688 -07 000000433 INF: FPGA: Recv ZPIEZORD 32005
17-03-17 21:55:58.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:55:58.698 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -8.7 V.
17-03-17 21:55:58.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35941 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35941 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35945 (-170.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:55:58.698 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35941, posNoise = 4, negNoise = 7
17-03-17 21:55:58.698 -07 000000610 INF: Z Motor: After move to -0.171206, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:55:58.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:55:58.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:55:58.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:55:58.698 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:55:58.698 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:55:58.698 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:55:58.698 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:55:58.698 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:55:58.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:55:58.698 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:55:58.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:55:58.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:55:58.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:55:58.708 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:55:58.708 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:55:58.708 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:55:58.708 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:55:58.708 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:55:58.708 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:55:58.718 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:55:58.718 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:55:58.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37576 150\n [Camera]
17-03-17 21:55:58.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:55:59.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:55:59.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:55:59.358 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:55:59.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:55:59.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:55:59.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:55:59.368 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:55:59.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:55:59.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:55:59.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:55:59.548 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37576 827
17-03-17 21:55:59.698 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:55:59.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:55:59.738 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:55:59.738 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:59.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:55:59.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:55:59.748 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:55:59.748 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:55:59.748 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:55:59.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:55:59.758 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:55:59.918 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:55:59.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:55:59.918 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:00.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:00.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:00.018 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:00.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:00.028 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:00.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:00.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:56:00.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:00.108 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:00.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37576 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-17 21:56:00.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:00.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171215960598165. ------
17-03-17 21:56:00.108 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:00.108 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17778 mm
17-03-17 21:56:00.108 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:00.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:56:00.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:56:00.428 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:00.428 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:56:00.428 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:56:00.428 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:00.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:00.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 21:56:00.438 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:00.438 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 21:56:00.438 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:56:00.438 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:56:00.438 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:00.448 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:00.448 -07 000000475 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:56:00.448 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 342 ms overall
17-03-17 21:56:00.448 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 9 ms to get response, and 10 ms overall
17-03-17 21:56:00.448 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:00.458 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:00.458 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:00.458 -07 000000502 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:56:00.458 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38836, sync = True, waitForSettling = False)
17-03-17 21:56:00.458 -07 000000475 INF: Z Motor: Moving to -0.177780 mm, started at -0.171216 mm, distance = -6.56 um
17-03-17 21:56:00.468 -07 000000475 INF: FPGA: Xmit ZDACW 38836\n [Z Motor]
17-03-17 21:56:00.478 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:01.228 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:56:01.228 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:01.228 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:56:01.228 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 743 ms to get response, and 773 ms overall
17-03-17 21:56:01.228 -07 000000475 INF: FPGA: 'ZDACW 38836' command took 0 ms to send, 753 ms to get response, and 772 ms overall
17-03-17 21:56:01.228 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:01.228 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 763 ms to get response, and 773 ms overall
17-03-17 21:56:01.228 -07 000000627 INF: FPGA: Recv ZDACR 38836
17-03-17 21:56:01.238 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:01.238 -07 000000475 INF: Z Motor: MoveAbsStepped took 779 ms (did NOT wait for settling yet))
17-03-17 21:56:01.268 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:01.268 -07 000000627 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:56:01.278 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:56:01.278 -07 000000502 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:01.278 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:56:01.278 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 773 ms, distance = 0.838 mm, average velocity = 1.084 mm/sec
17-03-17 21:56:01.928 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:01.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:02.228 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:02.228 -07 000000475 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:56:02.238 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:02.238 -07 000000502 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:02.258 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:02.258 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:02.258 -07 000000502 INF: Y Motor: Moved to 63.2236 after 1816 ms (table move)
17-03-17 21:56:02.258 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177780 mm (DAC = 38836)
17-03-17 21:56:02.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.268 -07 000000475 INF: FPGA: Recv ZSGSRD 36969
17-03-17 21:56:02.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:56:02.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36962
17-03-17 21:56:02.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:56:02.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36968
17-03-17 21:56:02.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36957
17-03-17 21:56:02.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.308 -07 000000475 INF: FPGA: Recv ZSGSRD 36965
17-03-17 21:56:02.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36961
17-03-17 21:56:02.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.328 -07 000000475 INF: FPGA: Recv ZSGSRD 36965
17-03-17 21:56:02.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.338 -07 000000576 INF: FPGA: Recv ZSGSRD 36968
17-03-17 21:56:02.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.348 -07 000000627 INF: FPGA: Recv ZSGSRD 36963
17-03-17 21:56:02.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:02.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36965
17-03-17 21:56:02.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.368 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:02.368 -07 000000475 INF: FPGA: Recv ZPIEZORD 33409
17-03-17 21:56:02.378 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:02.378 -07 000000431 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.926 V. Piezo Error = -7.9 V.
17-03-17 21:56:02.378 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36964 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36965 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36957 (-176.8 uncal um), Max = 36969 (-176.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:56:02.378 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36964, posNoise = 5, negNoise = 7
17-03-17 21:56:02.378 -07 000000431 INF: Z Motor: After move to -0.177780, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:02.378 -07 000000431 INF: Z Motor: Settle wait time = 1807 ms, measure time = 112 ms (allowed 150 ms), total time = 1919 ms
17-03-17 21:56:02.378 -07 000000431 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:02.418 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2302 ms
17-03-17 21:56:02.418 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:02.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:02.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:02.428 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:02.428 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:02.428 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:02.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:02.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:02.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:02.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:02.428 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:02.438 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:02.438 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:56:02.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:02.488 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:02.588 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.015368,
17-03-17 21:56:02.688 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:02.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:02.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:02.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:56:02.728 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:02.728 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:02.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:56:02.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:56:02.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:02.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:02.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:56:02.828 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:02.828 -07 000000502 INF: Autofocus start
17-03-17 21:56:02.828 -07 000000502 INF: MeasureProfile start
17-03-17 21:56:02.828 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:02.838 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:02.838 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:02.848 -07 000000502 INF: MeasureProfile done
17-03-17 21:56:02.848 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:56:02.848 -07 000000502 INF: Autofocus finished
17-03-17 21:56:03.038 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:03.038 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:03.038 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177787929619187. ----------
17-03-17 21:56:03.038 -07 000000610 INF: Cycle	57	Tile	5	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:03.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37351, sync = True, waitForSettling = True)
17-03-17 21:56:03.048 -07 000000610 INF: Z Motor: Moving to -0.170982 mm, started at -0.177788 mm, distance = 6.81 um
17-03-17 21:56:03.048 -07 000000610 INF: FPGA: Xmit ZDACW 37351\n [Z Motor]
17-03-17 21:56:03.048 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:56:03.058 -07 000000610 INF: FPGA: 'ZDACW 37351' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:03.058 -07 000000415 INF: FPGA: Recv ZDACR 37351
17-03-17 21:56:03.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35908
17-03-17 21:56:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.238 -07 000000415 INF: FPGA: Recv ZSGSRD 35907
17-03-17 21:56:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.248 -07 000000502 INF: FPGA: Recv ZSGSRD 35904
17-03-17 21:56:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.258 -07 000000415 INF: FPGA: Recv ZSGSRD 35911
17-03-17 21:56:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.268 -07 000000486 INF: FPGA: Recv ZSGSRD 35901
17-03-17 21:56:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35899
17-03-17 21:56:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.288 -07 000000576 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:56:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:56:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.308 -07 000000502 INF: FPGA: Recv ZSGSRD 35911
17-03-17 21:56:03.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:03.318 -07 000000486 INF: FPGA: Recv ZSGSRD 35904
17-03-17 21:56:03.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:03.328 -07 000000502 INF: FPGA: Recv ZPIEZORD 31991
17-03-17 21:56:03.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:03.338 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.7 V.
17-03-17 21:56:03.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35908 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35899 (-170.1 uncal um), Max = 35912 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:56:03.338 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 5, negNoise = 8
17-03-17 21:56:03.338 -07 000000610 INF: Z Motor: After move to -0.170982, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:03.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 21:56:03.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:03.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:03.338 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:03.338 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:03.338 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:03.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:03.338 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:03.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:03.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:56:03.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:03.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:56:03.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:03.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:03.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:03.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:03.348 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:03.358 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:56:03.358 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:56:03.358 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:56:03.358 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:56:03.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37527 150\n [Camera]
17-03-17 21:56:03.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:03.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:03.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:03.998 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:04.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:04.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:04.008 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:04.008 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:04.008 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:04.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:04.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:56:04.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37527 827
17-03-17 21:56:04.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 21:56:04.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:56:04.408 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:56:04.408 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:04.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:56:04.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:56:04.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:04.408 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:04.408 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:56:04.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:04.418 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:56:04.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:04.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:04.558 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:04.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:04.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:04.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:04.568 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:04.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:56:04.568 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:04.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:04.748 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:04.748 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:04.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37527 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-17 21:56:04.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:04.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170997537385346. ------
17-03-17 21:56:04.758 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:04.758 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17735 mm
17-03-17 21:56:04.758 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:04.758 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:56:04.758 -07 000000486 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:56:04.768 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:04.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:56:04.948 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:56:04.948 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:04.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:04.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:56:04.958 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:56:04.958 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:04.958 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:04.958 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:56:04.958 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:56:04.968 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:04.968 -07 000000433 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:56:04.968 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 213 ms overall
17-03-17 21:56:04.968 -07 000000486 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:04.978 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 209 ms to get response, and 217 ms overall
17-03-17 21:56:04.978 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:04.978 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38743, sync = True, waitForSettling = False)
17-03-17 21:56:04.978 -07 000000433 INF: Z Motor: Moving to -0.177354 mm, started at -0.170998 mm, distance = -6.36 um
17-03-17 21:56:04.978 -07 000000486 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:04.978 -07 000000486 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:56:04.988 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:04.998 -07 000000433 INF: FPGA: Xmit ZDACW 38743\n [Z Motor]
17-03-17 21:56:04.998 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:56:05.008 -07 000000433 INF: FPGA: 'ZDACW 38743' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:56:05.008 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:05.008 -07 000000382 INF: FPGA: Recv ZDACR 38743
17-03-17 21:56:05.018 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:05.018 -07 000000433 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:56:05.178 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:05.178 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:05.358 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:56:05.358 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:56:05.398 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:05.398 -07 000000475 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:56:05.408 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:05.408 -07 000000486 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:05.408 -07 000000486 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:56:05.408 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.179 mm/sec
17-03-17 21:56:06.358 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:06.358 -07 000000475 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:56:06.368 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:06.368 -07 000000486 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:06.388 -07 000000486 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:06.388 -07 000000486 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:06.388 -07 000000486 INF: Y Motor: Moved to 64.0562 after 1629 ms (table move)
17-03-17 21:56:06.388 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177354 mm (DAC = 38743)
17-03-17 21:56:06.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.398 -07 000000475 INF: FPGA: Recv ZSGSRD 36904
17-03-17 21:56:06.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:56:06.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.398 -07 000000475 INF: FPGA: Recv ZSGSRD 36895
17-03-17 21:56:06.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:06.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.408 -07 000000486 INF: FPGA: Recv ZSGSRD 36903
17-03-17 21:56:06.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.418 -07 000000382 INF: FPGA: Recv ZSGSRD 36899
17-03-17 21:56:06.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.428 -07 000000475 INF: FPGA: Recv ZSGSRD 36894
17-03-17 21:56:06.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.438 -07 000000486 INF: FPGA: Recv ZSGSRD 36901
17-03-17 21:56:06.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.448 -07 000000382 INF: FPGA: Recv ZSGSRD 36891
17-03-17 21:56:06.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.458 -07 000000486 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:56:06.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.468 -07 000000502 INF: FPGA: Recv ZSGSRD 36896
17-03-17 21:56:06.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:06.478 -07 000000475 INF: FPGA: Recv ZSGSRD 36899
17-03-17 21:56:06.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.488 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:06.488 -07 000000382 INF: FPGA: Recv ZPIEZORD 33330
17-03-17 21:56:06.498 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:06.498 -07 000000627 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.912 V. Piezo Error = -7.9 V.
17-03-17 21:56:06.498 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36898 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36899 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36891 (-176.4 uncal um), Max = 36904 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:56:06.498 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36898, posNoise = 6, negNoise = 7
17-03-17 21:56:06.498 -07 000000627 INF: Z Motor: After move to -0.177354, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:06.498 -07 000000627 INF: Z Motor: Settle wait time = 1416 ms, measure time = 103 ms (allowed 150 ms), total time = 1519 ms
17-03-17 21:56:06.498 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:06.548 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1787 ms
17-03-17 21:56:06.548 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:06.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:06.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:06.548 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:06.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:06.548 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:06.548 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:06.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:06.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:06.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:06.548 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:06.558 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:06.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:56:06.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:06.608 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:06.808 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:06.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:06.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:06.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:56:06.848 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:06.848 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:06.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 21:56:06.928 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:06.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 21:56:06.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:06.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:56:06.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:56:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:06.948 -07 000000502 INF: Autofocus start
17-03-17 21:56:06.948 -07 000000502 INF: MeasureProfile start
17-03-17 21:56:06.948 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:06.948 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:06.958 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:56:06.958 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:06.968 -07 000000502 INF: MeasureProfile done
17-03-17 21:56:06.968 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:56:06.968 -07 000000502 INF: Autofocus finished
17-03-17 21:56:07.158 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:07.158 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 21:56:07.158 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177363931617831. ----------
17-03-17 21:56:07.168 -07 000000610 INF: Cycle	57	Tile	6	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:07.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37294, sync = True, waitForSettling = True)
17-03-17 21:56:07.168 -07 000000610 INF: Z Motor: Moving to -0.170721 mm, started at -0.177364 mm, distance = 6.64 um
17-03-17 21:56:07.168 -07 000000610 INF: FPGA: Xmit ZDACW 37294\n [Z Motor]
17-03-17 21:56:07.168 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:56:07.178 -07 000000610 INF: FPGA: 'ZDACW 37294' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:07.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:07.178 -07 000000486 INF: FPGA: Recv ZDACR 37294
17-03-17 21:56:07.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35867
17-03-17 21:56:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.348 -07 000000458 INF: FPGA: Recv ZSGSRD 35871
17-03-17 21:56:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.358 -07 000000458 INF: FPGA: Recv ZSGSRD 35859
17-03-17 21:56:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.368 -07 000000433 INF: FPGA: Recv ZSGSRD 35863
17-03-17 21:56:07.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.378 -07 000000475 INF: FPGA: Recv ZSGSRD 35862
17-03-17 21:56:07.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.388 -07 000000627 INF: FPGA: Recv ZSGSRD 35860
17-03-17 21:56:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.398 -07 000000012 INF: FPGA: Recv ZSGSRD 35869
17-03-17 21:56:07.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35860
17-03-17 21:56:07.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35866
17-03-17 21:56:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:07.428 -07 000000382 INF: FPGA: Recv ZSGSRD 35866
17-03-17 21:56:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:07.438 -07 000000502 INF: FPGA: Recv ZPIEZORD 31926
17-03-17 21:56:07.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:07.448 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.7 V.
17-03-17 21:56:07.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35864 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35864 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35859 (-169.8 uncal um), Max = 35871 (-169.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:56:07.448 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35864, posNoise = 7, negNoise = 5
17-03-17 21:56:07.448 -07 000000610 INF: Z Motor: After move to -0.170721, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:07.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:56:07.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:07.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:07.448 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:07.448 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:07.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:07.448 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:07.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:07.448 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:07.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:07.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:07.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:07.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:07.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:56:07.448 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:07.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:07.448 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:07.458 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:56:07.458 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:56:07.468 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:56:07.468 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:56:07.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37470 150\n [Camera]
17-03-17 21:56:07.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:07.948 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.009895,
17-03-17 21:56:08.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:08.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:08.108 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:08.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:08.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:08.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:08.118 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:08.118 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:08.118 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:08.118 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:56:08.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37470 827
17-03-17 21:56:08.448 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:08.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:56:08.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:56:08.498 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:08.498 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:08.508 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:56:08.508 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:56:08.508 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:08.508 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:56:08.508 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:08.508 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:56:08.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:08.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:08.668 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:08.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:08.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:08.668 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:08.668 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:08.668 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:56:08.678 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:08.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:08.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:08.858 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:08.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37470 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-17 21:56:08.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:08.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.17072129626325. ------
17-03-17 21:56:08.858 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:08.858 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17711 mm
17-03-17 21:56:08.858 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:08.868 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:56:08.868 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 21:56:08.868 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:09.078 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:56:09.078 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:56:09.078 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:09.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:56:09.078 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:56:09.078 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:09.088 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:56:09.088 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 21:56:09.088 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:09.098 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 424 ms.
17-03-17 21:56:09.098 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38689, sync = True, waitForSettling = False)
17-03-17 21:56:09.098 -07 000000433 INF: Z Motor: Moving to -0.177107 mm, started at -0.170721 mm, distance = -6.39 um
17-03-17 21:56:09.098 -07 000000433 INF: FPGA: Xmit ZDACW 38689\n [Z Motor]
17-03-17 21:56:09.108 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:09.108 -07 000000475 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:56:09.108 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 240 ms to get response, and 241 ms overall
17-03-17 21:56:09.108 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:56:09.108 -07 000000433 INF: FPGA: 'ZDACW 38689' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:56:09.108 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 230 ms to get response, and 237 ms overall
17-03-17 21:56:09.108 -07 000000486 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:09.108 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:09.108 -07 000000486 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:56:09.118 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:09.128 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:09.138 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:09.998 -07 000000431 INF: FPGA: Recv ZDACR 38689
17-03-17 21:56:09.998 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:09.998 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:56:09.998 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 871 ms to get response, and 885 ms overall
17-03-17 21:56:09.998 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 860 ms to get response, and 890 ms overall
17-03-17 21:56:09.998 -07 000000433 INF: Z Motor: MoveAbsStepped took 896 ms (did NOT wait for settling yet))
17-03-17 21:56:09.998 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 850 ms to get response, and 889 ms overall
17-03-17 21:56:10.038 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:10.038 -07 000000431 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:56:10.048 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:10.048 -07 000000486 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:10.048 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:56:10.048 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 886 ms, distance = 0.836 mm, average velocity = 0.944 mm/sec
17-03-17 21:56:10.998 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:10.998 -07 000000433 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:56:11.008 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.008 -07 000000486 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:11.038 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:11.038 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:11.038 -07 000000486 INF: Y Motor: Moved to 64.8784 after 2170 ms (table move)
17-03-17 21:56:11.038 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177107 mm (DAC = 38689)
17-03-17 21:56:11.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.048 -07 000000431 INF: FPGA: Recv ZSGSRD 36853
17-03-17 21:56:11.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 21:56:11.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36863
17-03-17 21:56:11.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:11.058 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.058 -07 000000459 INF: FPGA: Recv ZSGSRD 36860
17-03-17 21:56:11.068 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:11.068 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36848
17-03-17 21:56:11.078 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.078 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.078 -07 000000433 INF: FPGA: Recv ZSGSRD 36855
17-03-17 21:56:11.088 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.088 -07 000000486 INF: FPGA: Recv ZSGSRD 36860
17-03-17 21:56:11.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.098 -07 000000431 INF: FPGA: Recv ZSGSRD 36860
17-03-17 21:56:11.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.108 -07 000000433 INF: FPGA: Recv ZSGSRD 36860
17-03-17 21:56:11.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.118 -07 000000431 INF: FPGA: Recv ZSGSRD 36861
17-03-17 21:56:11.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.128 -07 000000433 INF: FPGA: Recv ZSGSRD 36866
17-03-17 21:56:11.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.138 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:11.138 -07 000000486 INF: FPGA: Recv ZPIEZORD 33284
17-03-17 21:56:11.148 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.148 -07 000000012 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -7.9 V.
17-03-17 21:56:11.148 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36859 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36860 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36848 (-176.2 uncal um), Max = 36866 (-176.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:56:11.148 -07 000000012 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36859, posNoise = 7, negNoise = 11
17-03-17 21:56:11.148 -07 000000012 INF: Z Motor: After move to -0.177107, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:11.148 -07 000000012 INF: Z Motor: Settle wait time = 1940 ms, measure time = 105 ms (allowed 150 ms), total time = 2045 ms
17-03-17 21:56:11.148 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:11.198 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2331 ms
17-03-17 21:56:11.198 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:11.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:11.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:11.198 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:11.198 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:11.198 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:11.198 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:11.198 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:56:11.198 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:11.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:11.208 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:11.218 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:56:11.218 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:56:11.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:11.268 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:11.468 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:11.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:11.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:11.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:56:11.498 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:11.508 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:11.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:56:11.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:56:11.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:11.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:11.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:56:11.608 -07 000000415 INF: Autofocus start
17-03-17 21:56:11.608 -07 000000415 INF: MeasureProfile start
17-03-17 21:56:11.608 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:11.608 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:11.618 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:11.618 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:11.618 -07 000000415 INF: MeasureProfile done
17-03-17 21:56:11.618 -07 000000415 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 21:56:11.618 -07 000000415 INF: Autofocus finished
17-03-17 21:56:11.818 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:11.818 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:11.818 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177113387344302. ----------
17-03-17 21:56:11.828 -07 000000610 INF: Cycle	57	Tile	7	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:11.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37132, sync = True, waitForSettling = True)
17-03-17 21:56:11.828 -07 000000610 INF: Z Motor: Moving to -0.169979 mm, started at -0.177113 mm, distance = 7.13 um
17-03-17 21:56:11.828 -07 000000610 INF: FPGA: Xmit ZDACW 37132\n [Z Motor]
17-03-17 21:56:11.828 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:56:11.838 -07 000000610 INF: FPGA: 'ZDACW 37132' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:11.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:11.838 -07 000000627 INF: FPGA: Recv ZDACR 37132
17-03-17 21:56:11.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:11.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:11.928 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:11.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:11.998 -07 000000576 INF: FPGA: Recv ZSGSRD 35750
17-03-17 21:56:12.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:12.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.008 -07 000000458 INF: FPGA: Recv ZSGSRD 35757
17-03-17 21:56:12.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.018 -07 000000576 INF: FPGA: Recv ZSGSRD 35749
17-03-17 21:56:12.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35747
17-03-17 21:56:12.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.038 -07 000000415 INF: FPGA: Recv ZSGSRD 35751
17-03-17 21:56:12.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35746
17-03-17 21:56:12.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35750
17-03-17 21:56:12.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.068 -07 000000012 INF: FPGA: Recv ZSGSRD 35752
17-03-17 21:56:12.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.078 -07 000000382 INF: FPGA: Recv ZSGSRD 35753
17-03-17 21:56:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:12.088 -07 000000458 INF: FPGA: Recv ZSGSRD 35748
17-03-17 21:56:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:12.098 -07 000000382 INF: FPGA: Recv ZPIEZORD 31769
17-03-17 21:56:12.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:12.108 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.8 V.
17-03-17 21:56:12.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35750 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35750 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35746 (-169.1 uncal um), Max = 35757 (-169.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:12.108 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35750, posNoise = 7, negNoise = 4
17-03-17 21:56:12.108 -07 000000610 INF: Z Motor: After move to -0.169979, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:12.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:56:12.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:12.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:12.108 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:12.108 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:12.108 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:12.108 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:12.108 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:12.108 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:12.108 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:12.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:12.108 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:12.108 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:12.118 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:12.118 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:12.118 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:56:12.118 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:12.128 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:56:12.128 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:56:12.128 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:56:12.128 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:56:12.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37309 150\n [Camera]
17-03-17 21:56:12.338 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:12.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:12.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:12.778 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:12.778 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:12.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:12.778 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:12.778 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:12.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:12.788 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:12.788 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:56:12.968 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37309 827
17-03-17 21:56:13.118 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:13.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:56:13.178 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:56:13.178 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:13.178 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:13.178 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:56:13.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:56:13.178 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:56:13.178 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:13.288 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 107 ms.
17-03-17 21:56:13.298 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 21:56:13.308 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.005817,
17-03-17 21:56:13.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:13.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:13.328 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:13.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:13.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:13.338 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:13.338 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:13.338 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:56:13.338 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:13.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:13.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:56:13.528 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:13.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37309 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 21:56:13.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:13.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169988936079089. ------
17-03-17 21:56:13.528 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:13.528 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17649 mm
17-03-17 21:56:13.528 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:13.528 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:56:13.528 -07 000000382 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:56:13.538 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:13.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:56:13.728 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:56:13.728 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:13.728 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:13.728 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:56:13.728 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:56:13.728 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:13.728 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:13.728 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:56:13.738 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:56:13.748 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38554, sync = True, waitForSettling = False)
17-03-17 21:56:13.748 -07 000000627 INF: Z Motor: Moving to -0.176489 mm, started at -0.169989 mm, distance = -6.50 um
17-03-17 21:56:13.748 -07 000000627 INF: FPGA: Xmit ZDACW 38554\n [Z Motor]
17-03-17 21:56:13.748 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:13.748 -07 000000475 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:56:13.748 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 212 ms to get response, and 218 ms overall
17-03-17 21:56:13.748 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 203 ms to get response, and 215 ms overall
17-03-17 21:56:13.748 -07 000000382 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:13.748 -07 000000382 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:13.748 -07 000000382 INF: Y Motor: Moving 1351 steps-29
17-03-17 21:56:13.748 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:56:13.758 -07 000000627 INF: FPGA: 'ZDACW 38554' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:13.758 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:13.768 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:13.778 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:13.778 -07 000000475 INF: FPGA: Recv ZDACR 38554
17-03-17 21:56:13.788 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:56:13.788 -07 000000627 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:56:13.968 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:13.968 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 21:56:14.128 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:56:14.128 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:56:14.168 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:14.178 -07 000000627 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:56:14.178 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:14.178 -07 000000382 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:14.178 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:56:14.178 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.198 mm/sec
17-03-17 21:56:15.128 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:15.128 -07 000000475 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:56:15.138 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:15.138 -07 000000382 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:15.168 -07 000000382 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:15.168 -07 000000382 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:15.168 -07 000000382 INF: Y Motor: Moved to 65.7134 after 1641 ms (table move)
17-03-17 21:56:15.178 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176489 mm (DAC = 38554)
17-03-17 21:56:15.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36760
17-03-17 21:56:15.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:15.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.188 -07 000000576 INF: FPGA: Recv ZSGSRD 36764
17-03-17 21:56:15.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.198 -07 000000576 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:56:15.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.208 -07 000000576 INF: FPGA: Recv ZSGSRD 36763
17-03-17 21:56:15.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36760
17-03-17 21:56:15.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36759
17-03-17 21:56:15.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.238 -07 000000382 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:56:15.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.248 -07 000000475 INF: FPGA: Recv ZSGSRD 36767
17-03-17 21:56:15.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.258 -07 000000475 INF: FPGA: Recv ZSGSRD 36771
17-03-17 21:56:15.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:15.268 -07 000000627 INF: FPGA: Recv ZSGSRD 36762
17-03-17 21:56:15.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.278 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:15.278 -07 000000576 INF: FPGA: Recv ZPIEZORD 33166
17-03-17 21:56:15.288 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.288 -07 000000415 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.883 V. Piezo Error = -8.0 V.
17-03-17 21:56:15.288 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36762 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36761 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36754 (-175.5 uncal um), Max = 36771 (-175.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:56:15.288 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36762, posNoise = 9, negNoise = 8
17-03-17 21:56:15.288 -07 000000415 INF: Z Motor: After move to -0.176489, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:15.288 -07 000000415 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:56:15.288 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:15.338 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-17 21:56:15.338 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:15.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:15.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:15.338 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:15.338 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:15.338 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:15.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:15.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:15.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:15.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:15.348 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:15.348 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:15.348 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:56:15.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:15.408 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:15.608 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:15.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:15.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:15.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 21:56:15.648 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:15.648 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:15.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 292 ms overall
17-03-17 21:56:15.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:56:15.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:15.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:15.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:56:15.748 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:15.748 -07 000000431 INF: Autofocus start
17-03-17 21:56:15.748 -07 000000431 INF: MeasureProfile start
17-03-17 21:56:15.748 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:15.758 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:15.758 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:15.758 -07 000000431 INF: MeasureProfile done
17-03-17 21:56:15.758 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:56:15.758 -07 000000431 INF: Autofocus finished
17-03-17 21:56:15.958 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:15.958 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:15.958 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176490238766551. ----------
17-03-17 21:56:15.958 -07 000000610 INF: Cycle	57	Tile	8	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:15.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37087, sync = True, waitForSettling = True)
17-03-17 21:56:15.968 -07 000000610 INF: Z Motor: Moving to -0.169773 mm, started at -0.176490 mm, distance = 6.72 um
17-03-17 21:56:15.968 -07 000000610 INF: FPGA: Xmit ZDACW 37087\n [Z Motor]
17-03-17 21:56:15.968 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:56:15.978 -07 000000610 INF: FPGA: 'ZDACW 37087' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:15.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:15.978 -07 000000627 INF: FPGA: Recv ZDACR 37087
17-03-17 21:56:15.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:15.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.138 -07 000000576 INF: FPGA: Recv ZSGSRD 35717
17-03-17 21:56:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35721
17-03-17 21:56:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.158 -07 000000431 INF: FPGA: Recv ZSGSRD 35716
17-03-17 21:56:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35716
17-03-17 21:56:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.178 -07 000000012 INF: FPGA: Recv ZSGSRD 35717
17-03-17 21:56:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.188 -07 000000415 INF: FPGA: Recv ZSGSRD 35721
17-03-17 21:56:16.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35713
17-03-17 21:56:16.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35718
17-03-17 21:56:16.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.218 -07 000000627 INF: FPGA: Recv ZSGSRD 35715
17-03-17 21:56:16.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:16.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35715
17-03-17 21:56:16.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:16.238 -07 000000012 INF: FPGA: Recv ZPIEZORD 31755
17-03-17 21:56:16.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:16.248 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -8.8 V.
17-03-17 21:56:16.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35717 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35716 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35713 (-168.9 uncal um), Max = 35721 (-168.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:16.248 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35717, posNoise = 4, negNoise = 4
17-03-17 21:56:16.248 -07 000000610 INF: Z Motor: After move to -0.169773, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:16.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:56:16.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:16.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:16.248 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:16.248 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:16.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:16.248 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:16.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:16.248 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:16.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:16.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:16.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:16.248 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:16.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:16.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:16.258 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:56:16.258 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:16.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:56:16.268 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:56:16.268 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:56:16.268 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:56:16.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37264 150\n [Camera]
17-03-17 21:56:16.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:16.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:16.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:16.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:16.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:16.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:16.918 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:16.918 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:16.918 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:16.918 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:16.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:56:16.928 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:17.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37264 827
17-03-17 21:56:17.248 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:17.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:56:17.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:56:17.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:17.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:56:17.298 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:56:17.298 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:17.308 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:17.308 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:17.308 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:56:17.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:56:17.468 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:17.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:17.468 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:17.468 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:17.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:17.468 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:17.478 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:17.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:56:17.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:17.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:56:17.658 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:56:17.658 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:17.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37264 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-17 21:56:17.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:17.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169776937078411. ------
17-03-17 21:56:17.668 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:17.668 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17632 mm
17-03-17 21:56:17.668 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:17.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:56:17.878 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:56:17.878 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:17.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:56:17.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:56:17.878 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:17.888 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:17.888 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:17.888 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 21:56:17.888 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 21:56:17.898 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:56:17.898 -07 000000415 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:56:17.898 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:17.898 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:17.898 -07 000000627 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:56:17.898 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 236 ms overall
17-03-17 21:56:17.898 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38516, sync = True, waitForSettling = False)
17-03-17 21:56:17.898 -07 000000627 INF: Z Motor: Moving to -0.176315 mm, started at -0.169777 mm, distance = -6.54 um
17-03-17 21:56:17.908 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:17.908 -07 000000627 INF: FPGA: Xmit ZDACW 38516\n [Z Motor]
17-03-17 21:56:17.908 -07 000000415 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:17.908 -07 000000415 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:17.908 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:56:17.918 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:17.928 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:18.718 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 21:56:18.718 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:18.718 -07 000000627 INF: FPGA: 'ZDACW 38516' command took 0 ms to send, 800 ms to get response, and 812 ms overall
17-03-17 21:56:18.718 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 21:56:18.718 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 780 ms to get response, and 803 ms overall
17-03-17 21:56:18.718 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:18.718 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 790 ms to get response, and 812 ms overall
17-03-17 21:56:18.718 -07 000000012 INF: FPGA: Recv ZDACR 38516
17-03-17 21:56:18.728 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:18.728 -07 000000627 INF: Z Motor: MoveAbsStepped took 821 ms (did NOT wait for settling yet))
17-03-17 21:56:18.758 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:18.758 -07 000000627 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:56:18.768 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:18.768 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:18.768 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:56:18.768 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 804 ms, distance = 0.839 mm, average velocity = 1.044 mm/sec
17-03-17 21:56:19.028 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.005817,
17-03-17 21:56:19.718 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:19.718 -07 000000486 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:56:19.728 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:19.728 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:19.748 -07 000000415 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:19.748 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:19.748 -07 000000415 INF: Y Motor: Moved to 66.5386 after 1854 ms (table move)
17-03-17 21:56:19.758 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176315 mm (DAC = 38516)
17-03-17 21:56:19.758 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.758 -07 000000415 INF: FPGA: Recv ZSGSRD 36737
17-03-17 21:56:19.768 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:19.768 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.768 -07 000000415 INF: FPGA: Recv ZSGSRD 36734
17-03-17 21:56:19.778 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.778 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36735
17-03-17 21:56:19.788 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.788 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.788 -07 000000486 INF: FPGA: Recv ZSGSRD 36736
17-03-17 21:56:19.798 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.798 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.798 -07 000000486 INF: FPGA: Recv ZSGSRD 36734
17-03-17 21:56:19.808 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.808 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36736
17-03-17 21:56:19.818 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.818 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.818 -07 000000012 INF: FPGA: Recv ZSGSRD 36740
17-03-17 21:56:19.828 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36739
17-03-17 21:56:19.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.838 -07 000000415 INF: FPGA: Recv ZSGSRD 36736
17-03-17 21:56:19.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:19.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36739
17-03-17 21:56:19.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.858 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:19.858 -07 000000627 INF: FPGA: Recv ZPIEZORD 33135
17-03-17 21:56:19.868 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:19.868 -07 000000433 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.0 V.
17-03-17 21:56:19.868 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36737 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36736 (-175.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36734 (-175.4 uncal um), Max = 36740 (-175.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:56:19.868 -07 000000433 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36737, posNoise = 3, negNoise = 3
17-03-17 21:56:19.868 -07 000000433 INF: Z Motor: After move to -0.176315, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:19.868 -07 000000433 INF: Z Motor: Settle wait time = 1852 ms, measure time = 111 ms (allowed 150 ms), total time = 1963 ms
17-03-17 21:56:19.868 -07 000000433 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:19.908 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2239 ms
17-03-17 21:56:19.908 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:19.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:19.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:19.908 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:19.908 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:19.908 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:19.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:19.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:19.908 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:19.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:19.918 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:19.918 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:19.918 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:56:19.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:19.968 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:20.168 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:20.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:20.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:20.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 21:56:20.208 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:20.208 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:20.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:56:20.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:56:20.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:20.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:20.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 21:56:20.308 -07 000000627 INF: Autofocus start
17-03-17 21:56:20.308 -07 000000627 INF: MeasureProfile start
17-03-17 21:56:20.308 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:20.308 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:20.318 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:20.318 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:20.318 -07 000000627 INF: MeasureProfile done
17-03-17 21:56:20.318 -07 000000627 INF: X=-32  Z correction [um]=-0.2344
17-03-17 21:56:20.318 -07 000000627 INF: Autofocus finished
17-03-17 21:56:20.518 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:20.518 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:20.518 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176329633463007. ----------
17-03-17 21:56:20.518 -07 000000610 INF: Cycle	57	Tile	9	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:20.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36978, sync = True, waitForSettling = True)
17-03-17 21:56:20.528 -07 000000610 INF: Z Motor: Moving to -0.169274 mm, started at -0.176330 mm, distance = 7.06 um
17-03-17 21:56:20.528 -07 000000610 INF: FPGA: Xmit ZDACW 36978\n [Z Motor]
17-03-17 21:56:20.528 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 21:56:20.538 -07 000000610 INF: FPGA: 'ZDACW 36978' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:20.538 -07 000000627 INF: FPGA: Recv ZDACR 36978
17-03-17 21:56:20.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:20.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.698 -07 000000458 INF: FPGA: Recv ZSGSRD 35638
17-03-17 21:56:20.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:20.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35645
17-03-17 21:56:20.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35640
17-03-17 21:56:20.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:20.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.738 -07 000000502 INF: FPGA: Recv ZSGSRD 35645
17-03-17 21:56:20.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.768 -07 000000433 INF: FPGA: Recv ZSGSRD 35643
17-03-17 21:56:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:56:20.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.788 -07 000000415 INF: FPGA: Recv ZSGSRD 35637
17-03-17 21:56:20.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.808 -07 000000627 INF: FPGA: Recv ZSGSRD 35638
17-03-17 21:56:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:20.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.818 -07 000000458 INF: FPGA: Recv ZSGSRD 35642
17-03-17 21:56:20.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.828 -07 000000458 INF: FPGA: Recv ZSGSRD 35636
17-03-17 21:56:20.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:20.838 -07 000000627 INF: FPGA: Recv ZSGSRD 35640
17-03-17 21:56:20.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:20.848 -07 000000458 INF: FPGA: Recv ZPIEZORD 31637
17-03-17 21:56:20.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:20.858 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -8.8 V.
17-03-17 21:56:20.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35640 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35640 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35636 (-168.4 uncal um), Max = 35645 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:20.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35640, posNoise = 5, negNoise = 4
17-03-17 21:56:20.858 -07 000000610 INF: Z Motor: After move to -0.169274, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:20.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 21:56:20.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:20.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:20.858 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:20.858 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:20.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:20.858 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:20.858 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:20.858 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:20.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:20.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:20.858 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:20.858 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:20.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:20.858 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:20.868 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:20.868 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:20.878 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:56:20.878 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:56:20.878 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:56:20.878 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:56:20.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37154 150\n [Camera]
17-03-17 21:56:21.088 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:21.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:21.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:21.528 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:21.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:21.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:21.528 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:21.638 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:21.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 21:56:21.648 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:21.648 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:56:21.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37154 827
17-03-17 21:56:21.868 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:21.928 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:22.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:56:22.038 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:56:22.038 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:22.038 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:22.038 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:56:22.038 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:56:22.038 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:56:22.038 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:22.038 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:22.048 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 21:56:22.078 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:22.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:22.078 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:22.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:22.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:22.088 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:22.088 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:22.088 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:56:22.088 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:22.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:56:22.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:56:22.278 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:22.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37154 150' command took 2 ms to send, 1380 ms to get response, and 1389 ms overall
17-03-17 21:56:22.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:22.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169282272743495. ------
17-03-17 21:56:22.278 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17599 mm
17-03-17 21:56:22.278 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:22.278 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:22.288 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:56:22.288 -07 000000433 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:56:22.288 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:22.488 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:56:22.488 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:56:22.488 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:22.488 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:56:22.488 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:56:22.488 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:22.498 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:22.498 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:56:22.498 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:22.498 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:56:22.508 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38444, sync = True, waitForSettling = False)
17-03-17 21:56:22.508 -07 000000458 INF: Z Motor: Moving to -0.175985 mm, started at -0.169282 mm, distance = -6.70 um
17-03-17 21:56:22.508 -07 000000458 INF: FPGA: Xmit ZDACW 38444\n [Z Motor]
17-03-17 21:56:22.508 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:22.508 -07 000000502 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:56:22.508 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 21:56:22.508 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 219 ms to get response, and 227 ms overall
17-03-17 21:56:22.508 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:22.518 -07 000000458 INF: FPGA: 'ZDACW 38444' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:22.518 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:22.518 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 229 ms to get response, and 232 ms overall
17-03-17 21:56:22.518 -07 000000502 INF: FPGA: Recv ZDACR 38444
17-03-17 21:56:22.518 -07 000000433 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:22.518 -07 000000433 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:56:22.528 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:22.528 -07 000000458 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 21:56:22.528 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:22.538 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:22.738 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:22.738 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:56:22.898 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:56:22.898 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:56:22.938 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:22.948 -07 000000502 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:56:22.948 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:22.948 -07 000000433 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:22.948 -07 000000433 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:56:22.948 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.198 mm/sec
17-03-17 21:56:23.898 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:23.898 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:56:23.908 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:23.908 -07 000000433 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:23.938 -07 000000433 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:23.938 -07 000000433 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:23.938 -07 000000433 INF: Y Motor: Moved to 67.3716 after 1654 ms (table move)
17-03-17 21:56:23.948 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175985 mm (DAC = 38444)
17-03-17 21:56:23.948 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:23.948 -07 000000458 INF: FPGA: Recv ZSGSRD 36682
17-03-17 21:56:23.958 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:23.958 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:23.958 -07 000000627 INF: FPGA: Recv ZSGSRD 36686
17-03-17 21:56:23.968 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:23.968 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:23.968 -07 000000627 INF: FPGA: Recv ZSGSRD 36672
17-03-17 21:56:23.978 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:23.978 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:23.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36681
17-03-17 21:56:23.988 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:23.988 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:23.988 -07 000000433 INF: FPGA: Recv ZSGSRD 36690
17-03-17 21:56:23.998 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:23.998 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:23.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36678
17-03-17 21:56:24.008 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:24.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:24.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36685
17-03-17 21:56:24.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:24.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36686
17-03-17 21:56:24.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:24.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36695
17-03-17 21:56:24.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:24.038 -07 000000627 INF: FPGA: Recv ZSGSRD 36690
17-03-17 21:56:24.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.048 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:24.048 -07 000000433 INF: FPGA: Recv ZPIEZORD 33043
17-03-17 21:56:24.058 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.058 -07 000000012 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.1 V.
17-03-17 21:56:24.058 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36684 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36672 (-175.0 uncal um), Max = 36695 (-175.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:56:24.058 -07 000000012 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36684, posNoise = 11, negNoise = 12
17-03-17 21:56:24.058 -07 000000012 INF: Z Motor: After move to -0.175985, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:24.058 -07 000000012 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:56:24.058 -07 000000012 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:24.108 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1822 ms
17-03-17 21:56:24.108 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:24.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:24.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:24.108 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:24.108 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:24.108 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:24.118 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:24.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:24.118 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:24.118 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:24.118 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:24.128 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:24.128 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:56:24.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:24.168 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:24.368 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:24.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:24.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:24.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 21:56:24.388 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.994908,
17-03-17 21:56:24.408 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:24.408 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:24.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:56:24.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:56:24.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:24.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:56:24.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 226 ms.
17-03-17 21:56:24.698 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:24.698 -07 000000475 INF: Autofocus start
17-03-17 21:56:24.698 -07 000000475 INF: MeasureProfile start
17-03-17 21:56:24.698 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:24.708 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:56:24.708 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:24.708 -07 000000475 INF: MeasureProfile done
17-03-17 21:56:24.708 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:56:24.708 -07 000000475 INF: Autofocus finished
17-03-17 21:56:24.908 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:24.908 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:24.908 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175989150219494. ----------
17-03-17 21:56:24.908 -07 000000610 INF: Cycle	57	Tile	10	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:24.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36959, sync = True, waitForSettling = True)
17-03-17 21:56:24.918 -07 000000610 INF: Z Motor: Moving to -0.169187 mm, started at -0.175989 mm, distance = 6.80 um
17-03-17 21:56:24.918 -07 000000610 INF: FPGA: Xmit ZDACW 36959\n [Z Motor]
17-03-17 21:56:24.918 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:56:24.928 -07 000000610 INF: FPGA: 'ZDACW 36959' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:24.928 -07 000000458 INF: FPGA: Recv ZDACR 36959
17-03-17 21:56:24.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:24.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:56:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:56:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35627
17-03-17 21:56:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:56:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.128 -07 000000458 INF: FPGA: Recv ZSGSRD 35625
17-03-17 21:56:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:56:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.148 -07 000000459 INF: FPGA: Recv ZSGSRD 35632
17-03-17 21:56:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.158 -07 000000433 INF: FPGA: Recv ZSGSRD 35633
17-03-17 21:56:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.168 -07 000000502 INF: FPGA: Recv ZSGSRD 35623
17-03-17 21:56:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:25.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35628
17-03-17 21:56:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:25.188 -07 000000475 INF: FPGA: Recv ZPIEZORD 31635
17-03-17 21:56:25.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:25.198 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.8 V.
17-03-17 21:56:25.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35628 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35628 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35623 (-168.3 uncal um), Max = 35633 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:56:25.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35628, posNoise = 5, negNoise = 5
17-03-17 21:56:25.198 -07 000000610 INF: Z Motor: After move to -0.169187, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:25.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:56:25.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:25.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:25.198 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:25.198 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:25.198 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:25.198 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:25.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:25.198 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:25.198 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:25.198 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:25.198 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:25.198 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:25.198 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:25.198 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:25.208 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:25.208 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:25.218 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:56:25.218 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:56:25.218 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:56:25.218 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:56:25.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37136 150\n [Camera]
17-03-17 21:56:25.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:25.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:25.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:25.868 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:25.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:25.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:25.868 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:25.868 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:25.868 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 21:56:25.878 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:25.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:26.058 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37136 827
17-03-17 21:56:26.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:26.268 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:56:26.268 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:56:26.268 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:26.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:56:26.268 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:56:26.268 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:26.268 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:26.268 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:56:26.278 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:26.278 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:56:26.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:26.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:26.418 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:26.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:26.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:26.428 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:26.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:26.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:26.428 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:26.428 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2197586136, 0x0, 418435064) start.
17-03-17 21:56:26.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:56:26.608 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:26.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37136 150' command took 2 ms to send, 1379 ms to get response, and 1389 ms overall
17-03-17 21:56:26.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:26.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169205182197794. ------
17-03-17 21:56:26.618 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:26.618 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17554 mm
17-03-17 21:56:26.618 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:26.618 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:56:26.618 -07 000000433 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:56:26.628 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:26.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:56:26.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:56:26.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:26.828 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2197586136, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:56:26.838 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:56:26.838 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:26.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:26.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 21:56:26.838 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:26.848 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 21:56:26.848 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38346, sync = True, waitForSettling = False)
17-03-17 21:56:26.848 -07 000000502 INF: Z Motor: Moving to -0.175537 mm, started at -0.169205 mm, distance = -6.33 um
17-03-17 21:56:26.848 -07 000000502 INF: FPGA: Xmit ZDACW 38346\n [Z Motor]
17-03-17 21:56:26.858 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:26.858 -07 000000458 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:56:26.858 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 231 ms to get response, and 235 ms overall
17-03-17 21:56:26.858 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 220 ms to get response, and 232 ms overall
17-03-17 21:56:26.858 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:56:26.858 -07 000000502 INF: FPGA: 'ZDACW 38346' command took 0 ms to send, 3 ms to get response, and 8 ms overall
17-03-17 21:56:26.858 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:26.858 -07 000000433 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:26.858 -07 000000433 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:26.858 -07 000000433 INF: Y Motor: Moving 1346 steps-23
17-03-17 21:56:26.858 -07 000000458 INF: FPGA: Recv ZDACR 38346
17-03-17 21:56:26.868 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:56:26.868 -07 000000502 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-17 21:56:26.868 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:26.878 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:26.928 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:27.068 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:27.068 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 21:56:27.248 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:56:27.248 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:56:27.288 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:27.288 -07 000000458 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:56:27.298 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:27.298 -07 000000433 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:27.298 -07 000000433 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:56:27.298 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.140 mm/sec
17-03-17 21:56:28.248 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:28.248 -07 000000458 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:56:28.258 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:28.258 -07 000000433 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:28.278 -07 000000433 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:28.278 -07 000000433 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:28.278 -07 000000433 INF: Y Motor: Moved to 68.2046 after 1657 ms (table move)
17-03-17 21:56:28.278 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175537 mm (DAC = 38346)
17-03-17 21:56:28.278 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.288 -07 000000458 INF: FPGA: Recv ZSGSRD 36614
17-03-17 21:56:28.288 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 21:56:28.288 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.288 -07 000000502 INF: FPGA: Recv ZSGSRD 36611
17-03-17 21:56:28.298 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:56:28.298 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.298 -07 000000458 INF: FPGA: Recv ZSGSRD 36619
17-03-17 21:56:28.308 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36616
17-03-17 21:56:28.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.318 -07 000000458 INF: FPGA: Recv ZSGSRD 36616
17-03-17 21:56:28.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36613
17-03-17 21:56:28.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36611
17-03-17 21:56:28.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36614
17-03-17 21:56:28.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36619
17-03-17 21:56:28.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:28.368 -07 000000433 INF: FPGA: Recv ZSGSRD 36613
17-03-17 21:56:28.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.378 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:28.378 -07 000000459 INF: FPGA: Recv ZPIEZORD 32991
17-03-17 21:56:28.388 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:28.388 -07 000000012 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.0 V.
17-03-17 21:56:28.388 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36615 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36614 (-174.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36619 (-174.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:28.388 -07 000000012 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36615, posNoise = 4, negNoise = 4
17-03-17 21:56:28.388 -07 000000012 INF: Z Motor: After move to -0.175537, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:28.388 -07 000000012 INF: Z Motor: Settle wait time = 1434 ms, measure time = 101 ms (allowed 150 ms), total time = 1535 ms
17-03-17 21:56:28.388 -07 000000012 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:28.438 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1814 ms
17-03-17 21:56:28.438 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:28.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:28.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:28.438 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:28.438 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:28.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:28.438 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:28.448 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:28.448 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:28.448 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:28.448 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:28.448 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:28.448 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:56:28.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:28.498 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:28.698 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:28.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:28.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:28.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2249883464, 0x0, 559484976) start.
17-03-17 21:56:28.738 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:28.738 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:28.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:56:28.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2249883464, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:56:28.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:28.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:28.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:56:28.838 -07 000000458 INF: Autofocus start
17-03-17 21:56:28.838 -07 000000458 INF: MeasureProfile start
17-03-17 21:56:28.838 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:28.838 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:28.848 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:28.848 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:28.848 -07 000000458 INF: MeasureProfile done
17-03-17 21:56:28.848 -07 000000458 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:56:28.848 -07 000000458 INF: Autofocus finished
17-03-17 21:56:29.048 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:29.048 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-17 21:56:29.058 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175545879581712. ----------
17-03-17 21:56:29.058 -07 000000610 INF: Cycle	57	Tile	11	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:29.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36897, sync = True, waitForSettling = True)
17-03-17 21:56:29.058 -07 000000610 INF: Z Motor: Moving to -0.168904 mm, started at -0.175546 mm, distance = 6.64 um
17-03-17 21:56:29.058 -07 000000610 INF: FPGA: Xmit ZDACW 36897\n [Z Motor]
17-03-17 21:56:29.058 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:56:29.068 -07 000000610 INF: FPGA: 'ZDACW 36897' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:29.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:29.068 -07 000000576 INF: FPGA: Recv ZDACR 36897
17-03-17 21:56:29.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.228 -07 000000569 INF: FPGA: Recv ZSGSRD 35583
17-03-17 21:56:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.238 -07 000000486 INF: FPGA: Recv ZSGSRD 35581
17-03-17 21:56:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35580
17-03-17 21:56:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.258 -07 000000458 INF: FPGA: Recv ZSGSRD 35580
17-03-17 21:56:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.268 -07 000000459 INF: FPGA: Recv ZSGSRD 35585
17-03-17 21:56:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35592
17-03-17 21:56:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.288 -07 000000012 INF: FPGA: Recv ZSGSRD 35585
17-03-17 21:56:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35575
17-03-17 21:56:29.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.308 -07 000000569 INF: FPGA: Recv ZSGSRD 35580
17-03-17 21:56:29.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:29.318 -07 000000433 INF: FPGA: Recv ZSGSRD 35581
17-03-17 21:56:29.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:29.328 -07 000000012 INF: FPGA: Recv ZPIEZORD 31576
17-03-17 21:56:29.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:29.338 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -8.8 V.
17-03-17 21:56:29.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35582 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35581 (-168.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35575 (-168.0 uncal um), Max = 35592 (-168.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:56:29.338 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35582, posNoise = 10, negNoise = 7
17-03-17 21:56:29.338 -07 000000610 INF: Z Motor: After move to -0.168904, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:29.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:56:29.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:29.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:29.338 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:29.338 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:29.338 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:29.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:29.338 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:29.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:29.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:29.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:29.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:29.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:29.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:29.348 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:29.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:29.348 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:29.358 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:56:29.358 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:56:29.358 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:56:29.358 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:56:29.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37074 150\n [Camera]
17-03-17 21:56:29.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:29.748 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.990831,
17-03-17 21:56:30.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:30.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:30.008 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:30.008 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:30.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:30.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:30.118 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:30.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:56:30.128 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:30.128 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:56:30.198 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37074 827
17-03-17 21:56:30.348 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 21:56:30.498 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:56:30.498 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:56:30.498 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:30.498 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:56:30.498 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:56:30.498 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:30.498 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:30.508 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:30.508 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 21:56:30.508 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 21:56:30.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:30.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:30.558 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:30.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:30.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:30.568 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:30.568 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:30.568 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:56:30.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:30.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:56:30.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:30.758 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:30.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37074 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 21:56:30.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:30.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168909668439273. ------
17-03-17 21:56:30.758 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17550 mm
17-03-17 21:56:30.758 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:30.758 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:30.758 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:30.768 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:56:30.768 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:30.768 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:56:30.768 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:56:30.768 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38339, sync = True, waitForSettling = False)
17-03-17 21:56:30.768 -07 000000415 INF: Z Motor: Moving to -0.175505 mm, started at -0.168910 mm, distance = -6.60 um
17-03-17 21:56:30.778 -07 000000415 INF: FPGA: Xmit ZDACW 38339\n [Z Motor]
17-03-17 21:56:30.788 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:30.968 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:56:30.968 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:56:30.968 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:30.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:56:30.968 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:56:30.968 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:30.978 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:30.978 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:56:30.978 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:30.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:56:30.988 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:56:30.988 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:56:30.988 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:30.988 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-17 21:56:30.988 -07 000000569 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:30.988 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:30.988 -07 000000569 INF: Y Motor: Moving 1341 steps-16
17-03-17 21:56:30.988 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:30.998 -07 000000415 INF: FPGA: 'ZDACW 38339' command took 0 ms to send, 208 ms to get response, and 226 ms overall
17-03-17 21:56:30.998 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 219 ms to get response, and 228 ms overall
17-03-17 21:56:31.008 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:31.008 -07 000000486 INF: FPGA: Recv ZDACR 38339
17-03-17 21:56:31.018 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:31.018 -07 000000415 INF: Z Motor: MoveAbsStepped took 247 ms (did NOT wait for settling yet))
17-03-17 21:56:31.368 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:56:31.368 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:56:31.408 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:31.408 -07 000000486 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:56:31.418 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:56:31.418 -07 000000569 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:31.418 -07 000000569 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:56:31.418 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-17 21:56:31.928 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:32.368 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:32.368 -07 000000415 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:56:32.378 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:32.378 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:32.398 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:32.398 -07 000000569 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:56:32.398 -07 000000569 INF: Y Motor: Moved to 69.0269 after 1633 ms (table move)
17-03-17 21:56:32.398 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175505 mm (DAC = 38339)
17-03-17 21:56:32.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.408 -07 000000486 INF: FPGA: Recv ZSGSRD 36612
17-03-17 21:56:32.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:56:32.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.408 -07 000000486 INF: FPGA: Recv ZSGSRD 36607
17-03-17 21:56:32.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:32.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.418 -07 000000486 INF: FPGA: Recv ZSGSRD 36618
17-03-17 21:56:32.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.428 -07 000000486 INF: FPGA: Recv ZSGSRD 36611
17-03-17 21:56:32.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.438 -07 000000486 INF: FPGA: Recv ZSGSRD 36609
17-03-17 21:56:32.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.448 -07 000000424 INF: FPGA: Recv ZSGSRD 36611
17-03-17 21:56:32.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.458 -07 000000569 INF: FPGA: Recv ZSGSRD 36603
17-03-17 21:56:32.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.468 -07 000000415 INF: FPGA: Recv ZSGSRD 36611
17-03-17 21:56:32.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.478 -07 000000415 INF: FPGA: Recv ZSGSRD 36604
17-03-17 21:56:32.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:32.488 -07 000000415 INF: FPGA: Recv ZSGSRD 36613
17-03-17 21:56:32.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.498 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:32.498 -07 000000424 INF: FPGA: Recv ZPIEZORD 33001
17-03-17 21:56:32.508 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:32.508 -07 000000502 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.0 V.
17-03-17 21:56:32.508 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36610 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36611 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36603 (-174.6 uncal um), Max = 36618 (-174.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:56:32.508 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36610, posNoise = 8, negNoise = 7
17-03-17 21:56:32.508 -07 000000502 INF: Z Motor: After move to -0.175505, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:32.508 -07 000000502 INF: Z Motor: Settle wait time = 1636 ms, measure time = 102 ms (allowed 150 ms), total time = 1738 ms
17-03-17 21:56:32.508 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:32.558 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1794 ms
17-03-17 21:56:32.558 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:32.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:32.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:32.558 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:32.558 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:32.558 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:32.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:32.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:32.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:32.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:32.568 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:32.568 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:32.568 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:56:32.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:32.618 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:32.818 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:32.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:32.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:32.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 21:56:32.858 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:32.858 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:32.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:56:32.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:56:32.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:32.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:32.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:56:32.958 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:32.958 -07 000000569 INF: Autofocus start
17-03-17 21:56:32.958 -07 000000569 INF: MeasureProfile start
17-03-17 21:56:32.958 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:32.968 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:32.968 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:32.978 -07 000000569 INF: MeasureProfile done
17-03-17 21:56:32.978 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:56:32.978 -07 000000569 INF: Autofocus finished
17-03-17 21:56:33.168 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:33.168 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 21:56:33.168 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175513758521004. ----------
17-03-17 21:56:33.178 -07 000000610 INF: Cycle	57	Tile	12	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:33.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36836, sync = True, waitForSettling = True)
17-03-17 21:56:33.178 -07 000000610 INF: Z Motor: Moving to -0.168624 mm, started at -0.175514 mm, distance = 6.89 um
17-03-17 21:56:33.178 -07 000000610 INF: FPGA: Xmit ZDACW 36836\n [Z Motor]
17-03-17 21:56:33.178 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:56:33.188 -07 000000610 INF: FPGA: 'ZDACW 36836' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:33.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:33.188 -07 000000433 INF: FPGA: Recv ZDACR 36836
17-03-17 21:56:33.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.348 -07 000000458 INF: FPGA: Recv ZSGSRD 35538
17-03-17 21:56:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.358 -07 000000433 INF: FPGA: Recv ZSGSRD 35540
17-03-17 21:56:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.368 -07 000000458 INF: FPGA: Recv ZSGSRD 35543
17-03-17 21:56:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35534
17-03-17 21:56:33.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35537
17-03-17 21:56:33.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.398 -07 000000569 INF: FPGA: Recv ZSGSRD 35542
17-03-17 21:56:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.408 -07 000000424 INF: FPGA: Recv ZSGSRD 35535
17-03-17 21:56:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.418 -07 000000569 INF: FPGA: Recv ZSGSRD 35540
17-03-17 21:56:33.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.428 -07 000000576 INF: FPGA: Recv ZSGSRD 35535
17-03-17 21:56:33.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:33.438 -07 000000576 INF: FPGA: Recv ZSGSRD 35539
17-03-17 21:56:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:33.448 -07 000000576 INF: FPGA: Recv ZPIEZORD 31563
17-03-17 21:56:33.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:33.458 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -8.8 V.
17-03-17 21:56:33.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35538 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35534 (-167.7 uncal um), Max = 35543 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:33.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35538, posNoise = 5, negNoise = 4
17-03-17 21:56:33.458 -07 000000610 INF: Z Motor: After move to -0.168624, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:33.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:56:33.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:33.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:33.458 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:33.458 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:33.458 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:33.458 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:33.458 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:33.458 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:33.458 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:33.458 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:33.458 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:33.458 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:33.468 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:33.468 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:33.468 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:33.468 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:33.478 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:56:33.478 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:56:33.478 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:56:33.478 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:56:33.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 37012 150\n [Camera]
17-03-17 21:56:33.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:34.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:34.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:34.118 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:34.118 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:34.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:34.128 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:34.128 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218866504, 0x0, 391868352) start.
17-03-17 21:56:34.128 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:34.128 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:34.128 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:56:34.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37012 827
17-03-17 21:56:34.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:34.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218866504, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:56:34.528 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:56:34.528 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:34.528 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:34.528 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:56:34.528 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:56:34.528 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:56:34.528 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:34.528 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:34.538 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:56:34.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:34.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:34.678 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:34.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:34.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:34.778 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:34.788 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:34.788 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:56:34.788 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:34.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:34.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:56:34.868 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:34.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 37012 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-17 21:56:34.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:34.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168627003105036. ------
17-03-17 21:56:34.868 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:34.868 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17496 mm
17-03-17 21:56:34.868 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:34.878 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:34.878 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:56:34.878 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:56:34.878 -07 000000433 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:56:34.878 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38219, sync = True, waitForSettling = False)
17-03-17 21:56:34.878 -07 000000569 INF: Z Motor: Moving to -0.174955 mm, started at -0.168627 mm, distance = -6.33 um
17-03-17 21:56:34.878 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:34.888 -07 000000569 INF: FPGA: Xmit ZDACW 38219\n [Z Motor]
17-03-17 21:56:34.888 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:56:34.898 -07 000000569 INF: FPGA: 'ZDACW 38219' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:56:34.898 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:34.898 -07 000000458 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:56:34.908 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:56:34.908 -07 000000433 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:34.908 -07 000000433 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:34.908 -07 000000433 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:56:34.908 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:34.908 -07 000000458 INF: FPGA: Recv ZDACR 38219
17-03-17 21:56:34.918 -07 000000569 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:34.918 -07 000000569 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:56:34.918 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:35.078 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:35.078 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 21:56:35.108 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.990831,
17-03-17 21:56:35.188 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:56:35.188 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:56:35.188 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:35.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:56:35.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:56:35.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:35.188 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:35.188 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 21:56:35.188 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:35.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:56:35.288 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:56:35.288 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:56:35.328 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:35.338 -07 000000576 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:56:35.338 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:35.338 -07 000000433 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:35.338 -07 000000433 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:56:35.338 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.846 mm, average velocity = 2.197 mm/sec
17-03-17 21:56:36.288 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:36.288 -07 000000576 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:56:36.298 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:36.298 -07 000000433 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:36.318 -07 000000433 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:36.318 -07 000000433 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:56:36.318 -07 000000433 INF: Y Motor: Moved to 69.8628 after 1443 ms (table move)
17-03-17 21:56:36.318 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174955 mm (DAC = 38219)
17-03-17 21:56:36.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36525
17-03-17 21:56:36.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:56:36.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36524
17-03-17 21:56:36.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:36.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.338 -07 000000424 INF: FPGA: Recv ZSGSRD 36529
17-03-17 21:56:36.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36530
17-03-17 21:56:36.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36526
17-03-17 21:56:36.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.368 -07 000000424 INF: FPGA: Recv ZSGSRD 36521
17-03-17 21:56:36.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.378 -07 000000433 INF: FPGA: Recv ZSGSRD 36519
17-03-17 21:56:36.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.388 -07 000000627 INF: FPGA: Recv ZSGSRD 36525
17-03-17 21:56:36.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.398 -07 000000433 INF: FPGA: Recv ZSGSRD 36517
17-03-17 21:56:36.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.408 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:36.408 -07 000000576 INF: FPGA: Recv ZSGSRD 36530
17-03-17 21:56:36.418 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.418 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:36.418 -07 000000433 INF: FPGA: Recv ZPIEZORD 32876
17-03-17 21:56:36.428 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:36.428 -07 000000012 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.832 V. Piezo Error = -8.1 V.
17-03-17 21:56:36.428 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36525 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36525 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36517 (-174.0 uncal um), Max = 36530 (-174.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:56:36.428 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36525, posNoise = 5, negNoise = 8
17-03-17 21:56:36.428 -07 000000012 INF: Z Motor: After move to -0.174955, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:36.428 -07 000000012 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:56:36.428 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:36.478 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:56:36.478 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:36.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:36.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:36.478 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:36.478 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:36.478 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:36.478 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:36.478 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:36.478 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:36.488 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:36.488 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:36.488 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:36.488 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:56:36.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:36.538 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:36.738 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:36.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:36.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:36.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:56:36.778 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:36.778 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:36.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:56:36.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:56:36.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:36.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:36.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:56:36.878 -07 000000424 INF: Autofocus start
17-03-17 21:56:36.878 -07 000000424 INF: MeasureProfile start
17-03-17 21:56:36.888 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:36.888 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:36.898 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:56:36.898 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:36.898 -07 000000424 INF: MeasureProfile done
17-03-17 21:56:36.898 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:56:36.898 -07 000000424 INF: Autofocus finished
17-03-17 21:56:36.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:36.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:37.098 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:37.098 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:37.098 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174967700488954. ----------
17-03-17 21:56:37.098 -07 000000610 INF: Cycle	57	Tile	13	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:37.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36752, sync = True, waitForSettling = True)
17-03-17 21:56:37.108 -07 000000610 INF: Z Motor: Moving to -0.168240 mm, started at -0.174968 mm, distance = 6.73 um
17-03-17 21:56:37.108 -07 000000610 INF: FPGA: Xmit ZDACW 36752\n [Z Motor]
17-03-17 21:56:37.108 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:56:37.118 -07 000000610 INF: FPGA: 'ZDACW 36752' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:37.118 -07 000000012 INF: FPGA: Recv ZDACR 36752
17-03-17 21:56:37.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.278 -07 000000475 INF: FPGA: Recv ZSGSRD 35483
17-03-17 21:56:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.288 -07 000000012 INF: FPGA: Recv ZSGSRD 35485
17-03-17 21:56:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.298 -07 000000569 INF: FPGA: Recv ZSGSRD 35478
17-03-17 21:56:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35481
17-03-17 21:56:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.318 -07 000000569 INF: FPGA: Recv ZSGSRD 35478
17-03-17 21:56:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.328 -07 000000012 INF: FPGA: Recv ZSGSRD 35476
17-03-17 21:56:37.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35479
17-03-17 21:56:37.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.348 -07 000000012 INF: FPGA: Recv ZSGSRD 35482
17-03-17 21:56:37.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35483
17-03-17 21:56:37.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:37.368 -07 000000012 INF: FPGA: Recv ZSGSRD 35478
17-03-17 21:56:37.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:37.378 -07 000000627 INF: FPGA: Recv ZPIEZORD 31498
17-03-17 21:56:37.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:37.388 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -8.8 V.
17-03-17 21:56:37.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35480 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35480 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35476 (-167.4 uncal um), Max = 35485 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:37.388 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35480, posNoise = 5, negNoise = 4
17-03-17 21:56:37.388 -07 000000610 INF: Z Motor: After move to -0.168240, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:37.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:56:37.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:37.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:37.388 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:37.388 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:37.388 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:37.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:37.388 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:37.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:37.388 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:37.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:37.388 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:37.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:37.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:37.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:37.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 21:56:37.398 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:37.408 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:56:37.408 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:56:37.408 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:56:37.408 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:56:37.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36929 150\n [Camera]
17-03-17 21:56:37.608 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:38.058 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 21:56:38.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 21:56:38.058 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:38.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 21:56:38.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 21:56:38.058 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:38.168 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:38.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:38.168 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:38.168 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:56:38.248 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36929 827
17-03-17 21:56:38.398 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 21:56:38.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:56:38.548 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:56:38.548 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:38.548 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:38.548 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:56:38.548 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:56:38.548 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:38.558 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:38.558 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 21:56:38.558 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 21:56:38.608 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:38.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:38.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:38.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:38.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:38.608 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:38.618 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:38.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:56:38.618 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:38.618 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:56:38.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:56:38.798 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:38.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36929 150' command took 2 ms to send, 1386 ms to get response, and 1390 ms overall
17-03-17 21:56:38.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:38.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168254398800814. ------
17-03-17 21:56:38.808 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17486 mm
17-03-17 21:56:38.808 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:38.808 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:38.808 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:38.808 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:56:38.808 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:56:38.808 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38198, sync = True, waitForSettling = False)
17-03-17 21:56:38.808 -07 000000627 INF: Z Motor: Moving to -0.174859 mm, started at -0.168254 mm, distance = -6.60 um
17-03-17 21:56:38.818 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:38.818 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:38.818 -07 000000424 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:56:38.828 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:56:38.828 -07 000000415 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:38.828 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:38.828 -07 000000415 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:56:38.828 -07 000000627 INF: FPGA: Xmit ZDACW 38198\n [Z Motor]
17-03-17 21:56:38.828 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:56:38.838 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:38.838 -07 000000627 INF: FPGA: 'ZDACW 38198' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:56:38.848 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:38.858 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:38.858 -07 000000382 INF: FPGA: Recv ZDACR 38198
17-03-17 21:56:38.868 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:56:38.868 -07 000000627 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:56:39.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:56:39.018 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:56:39.018 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:39.018 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:56:39.018 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:56:39.018 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:39.018 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:39.018 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:56:39.018 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:39.028 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:56:39.038 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:39.038 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:56:39.218 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:56:39.218 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:56:39.258 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:39.258 -07 000000475 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:56:39.268 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:56:39.268 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:39.268 -07 000000415 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:56:39.268 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 21:56:40.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:40.218 -07 000000424 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:56:40.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.228 -07 000000415 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:40.248 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:40.248 -07 000000415 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:40.248 -07 000000415 INF: Y Motor: Moved to 70.6880 after 1436 ms (table move)
17-03-17 21:56:40.248 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174859 mm (DAC = 38198)
17-03-17 21:56:40.248 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.258 -07 000000433 INF: FPGA: Recv ZSGSRD 36516
17-03-17 21:56:40.258 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:56:40.258 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.258 -07 000000431 INF: FPGA: Recv ZSGSRD 36508
17-03-17 21:56:40.268 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:40.268 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.268 -07 000000431 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:56:40.278 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.278 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.278 -07 000000424 INF: FPGA: Recv ZSGSRD 36514
17-03-17 21:56:40.288 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.288 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.288 -07 000000431 INF: FPGA: Recv ZSGSRD 36509
17-03-17 21:56:40.298 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.298 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.298 -07 000000415 INF: FPGA: Recv ZSGSRD 36509
17-03-17 21:56:40.308 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36508
17-03-17 21:56:40.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.318 -07 000000424 INF: FPGA: Recv ZSGSRD 36508
17-03-17 21:56:40.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36509
17-03-17 21:56:40.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:40.338 -07 000000502 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:56:40.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.348 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:40.348 -07 000000415 INF: FPGA: Recv ZPIEZORD 32850
17-03-17 21:56:40.358 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:40.358 -07 000000547 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.1 V.
17-03-17 21:56:40.358 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36510 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36509 (-174.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36508 (-174.0 uncal um), Max = 36516 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:56:40.358 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36510, posNoise = 6, negNoise = 2
17-03-17 21:56:40.358 -07 000000547 INF: Z Motor: After move to -0.174859, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:40.358 -07 000000547 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:56:40.358 -07 000000547 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:40.408 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:56:40.408 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:40.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:40.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:40.408 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:40.408 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:40.408 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:40.408 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:40.408 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:40.408 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:40.418 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:40.418 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:40.428 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:56:40.428 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:56:40.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:40.468 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.000345,
17-03-17 21:56:40.478 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:40.678 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:40.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:40.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:40.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 21:56:40.718 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:40.718 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:40.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:56:40.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:56:40.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:40.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:40.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:56:40.818 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:40.818 -07 000000547 INF: Autofocus start
17-03-17 21:56:40.818 -07 000000547 INF: MeasureProfile start
17-03-17 21:56:40.818 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:40.828 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:56:40.828 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:40.828 -07 000000547 INF: MeasureProfile done
17-03-17 21:56:40.828 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:56:40.828 -07 000000547 INF: Autofocus finished
17-03-17 21:56:41.028 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:41.028 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:41.028 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174871337306828. ----------
17-03-17 21:56:41.028 -07 000000610 INF: Cycle	57	Tile	14	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:41.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36695, sync = True, waitForSettling = True)
17-03-17 21:56:41.038 -07 000000610 INF: Z Motor: Moving to -0.167979 mm, started at -0.174871 mm, distance = 6.89 um
17-03-17 21:56:41.038 -07 000000610 INF: FPGA: Xmit ZDACW 36695\n [Z Motor]
17-03-17 21:56:41.038 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:56:41.048 -07 000000610 INF: FPGA: 'ZDACW 36695' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:41.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:41.048 -07 000000431 INF: FPGA: Recv ZDACR 36695
17-03-17 21:56:41.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.208 -07 000000431 INF: FPGA: Recv ZSGSRD 35438
17-03-17 21:56:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.218 -07 000000433 INF: FPGA: Recv ZSGSRD 35438
17-03-17 21:56:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.228 -07 000000547 INF: FPGA: Recv ZSGSRD 35431
17-03-17 21:56:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.238 -07 000000502 INF: FPGA: Recv ZSGSRD 35442
17-03-17 21:56:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.248 -07 000000547 INF: FPGA: Recv ZSGSRD 35442
17-03-17 21:56:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.258 -07 000000415 INF: FPGA: Recv ZSGSRD 35440
17-03-17 21:56:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35438
17-03-17 21:56:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35440
17-03-17 21:56:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.288 -07 000000431 INF: FPGA: Recv ZSGSRD 35446
17-03-17 21:56:41.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:41.298 -07 000000547 INF: FPGA: Recv ZSGSRD 35434
17-03-17 21:56:41.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:41.308 -07 000000433 INF: FPGA: Recv ZPIEZORD 31422
17-03-17 21:56:41.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:41.318 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -8.9 V.
17-03-17 21:56:41.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35439 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35439 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35431 (-167.1 uncal um), Max = 35446 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:56:41.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35439, posNoise = 7, negNoise = 8
17-03-17 21:56:41.318 -07 000000610 INF: Z Motor: After move to -0.167979, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:41.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:56:41.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:41.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:41.318 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:41.318 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:41.318 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:41.318 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:41.318 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:41.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:41.318 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:41.318 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:41.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:41.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:41.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:41.328 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:41.328 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:41.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:41.328 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:56:41.328 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:56:41.338 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:56:41.338 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:56:41.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36872 150\n [Camera]
17-03-17 21:56:41.538 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:41.928 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:41.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:41.978 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:41.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:41.978 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:41.978 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:41.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:41.988 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:41.988 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:41.988 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:56:41.988 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:41.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:56:42.168 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36872 827
17-03-17 21:56:42.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:42.368 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:56:42.368 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:56:42.368 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:42.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:56:42.368 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:56:42.368 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:42.368 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:42.368 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:56:42.368 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:42.378 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:56:42.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:42.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:42.538 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:42.538 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:42.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:42.538 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:42.548 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:42.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:56:42.548 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:42.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 21:56:42.728 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:42.728 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:42.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36872 150' command took 2 ms to send, 1384 ms to get response, and 1389 ms overall
17-03-17 21:56:42.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:42.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167991006103002. ------
17-03-17 21:56:42.728 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:42.728 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17433 mm
17-03-17 21:56:42.728 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:42.738 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:42.738 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 21:56:42.738 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:42.738 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38081, sync = True, waitForSettling = False)
17-03-17 21:56:42.738 -07 000000502 INF: Z Motor: Moving to -0.174324 mm, started at -0.167991 mm, distance = -6.33 um
17-03-17 21:56:42.738 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:56:42.738 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:56:42.748 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:42.748 -07 000000576 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:56:42.758 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:56:42.758 -07 000000459 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:42.758 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:42.758 -07 000000459 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:56:42.758 -07 000000502 INF: FPGA: Xmit ZDACW 38081\n [Z Motor]
17-03-17 21:56:42.758 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:56:42.768 -07 000000502 INF: FPGA: 'ZDACW 38081' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:56:42.768 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:42.768 -07 000000475 INF: FPGA: Recv ZDACR 38081
17-03-17 21:56:42.778 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:42.778 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:42.778 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 21:56:42.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:56:42.918 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:56:42.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:42.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:56:42.928 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:56:42.928 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:42.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:42.928 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:42.928 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:56:42.938 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:56:42.938 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:42.938 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 21:56:43.158 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:56:43.158 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 21:56:43.188 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:43.198 -07 000000576 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:56:43.198 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:56:43.198 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:43.198 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:56:43.198 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-17 21:56:44.148 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:44.148 -07 000000486 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:56:44.158 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:44.158 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:44.178 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:44.178 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:44.178 -07 000000459 INF: Y Motor: Moved to 71.5186 after 1437 ms (table move)
17-03-17 21:56:44.178 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174324 mm (DAC = 38081)
17-03-17 21:56:44.178 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.188 -07 000000486 INF: FPGA: Recv ZSGSRD 36430
17-03-17 21:56:44.188 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:56:44.188 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.188 -07 000000424 INF: FPGA: Recv ZSGSRD 36429
17-03-17 21:56:44.198 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.198 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.198 -07 000000475 INF: FPGA: Recv ZSGSRD 36426
17-03-17 21:56:44.208 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.208 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.208 -07 000000576 INF: FPGA: Recv ZSGSRD 36426
17-03-17 21:56:44.218 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:44.218 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.218 -07 000000382 INF: FPGA: Recv ZSGSRD 36435
17-03-17 21:56:44.228 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.228 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.228 -07 000000569 INF: FPGA: Recv ZSGSRD 36426
17-03-17 21:56:44.238 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.238 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36426
17-03-17 21:56:44.248 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.248 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36424
17-03-17 21:56:44.258 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.258 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.258 -07 000000576 INF: FPGA: Recv ZSGSRD 36416
17-03-17 21:56:44.268 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.268 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:44.268 -07 000000569 INF: FPGA: Recv ZSGSRD 36428
17-03-17 21:56:44.278 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.278 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:44.278 -07 000000382 INF: FPGA: Recv ZPIEZORD 32764
17-03-17 21:56:44.288 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.288 -07 000000458 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.1 V.
17-03-17 21:56:44.288 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36427 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36426 (-173.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36416 (-173.4 uncal um), Max = 36435 (-173.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:56:44.288 -07 000000458 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36427, posNoise = 8, negNoise = 11
17-03-17 21:56:44.288 -07 000000458 INF: Z Motor: After move to -0.174324, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:44.288 -07 000000458 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:56:44.288 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:44.338 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:56:44.338 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:44.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:44.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:44.338 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:44.338 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:44.338 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:44.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:44.338 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:56:44.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:44.348 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:44.348 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:44.358 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:56:44.358 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:56:44.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:44.398 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:44.598 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:44.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:44.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:44.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 21:56:44.638 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:44.638 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:44.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:56:44.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:56:44.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:44.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:44.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:56:44.738 -07 000000415 INF: Autofocus start
17-03-17 21:56:44.738 -07 000000415 INF: MeasureProfile start
17-03-17 21:56:44.738 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:44.738 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:44.748 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:44.748 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:44.748 -07 000000415 INF: MeasureProfile done
17-03-17 21:56:44.748 -07 000000415 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:56:44.748 -07 000000415 INF: Autofocus finished
17-03-17 21:56:44.948 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:44.948 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:44.948 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174338127699061. ----------
17-03-17 21:56:44.948 -07 000000610 INF: Cycle	57	Tile	15	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:44.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36632, sync = True, waitForSettling = True)
17-03-17 21:56:44.958 -07 000000610 INF: Z Motor: Moving to -0.167691 mm, started at -0.174338 mm, distance = 6.65 um
17-03-17 21:56:44.958 -07 000000610 INF: FPGA: Xmit ZDACW 36632\n [Z Motor]
17-03-17 21:56:44.958 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:56:44.968 -07 000000610 INF: FPGA: 'ZDACW 36632' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:44.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:44.968 -07 000000627 INF: FPGA: Recv ZDACR 36632
17-03-17 21:56:44.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:44.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.128 -07 000000424 INF: FPGA: Recv ZSGSRD 35394
17-03-17 21:56:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35393
17-03-17 21:56:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35395
17-03-17 21:56:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.158 -07 000000433 INF: FPGA: Recv ZSGSRD 35397
17-03-17 21:56:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35398
17-03-17 21:56:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35394
17-03-17 21:56:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.188 -07 000000415 INF: FPGA: Recv ZSGSRD 35390
17-03-17 21:56:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.198 -07 000000459 INF: FPGA: Recv ZSGSRD 35398
17-03-17 21:56:45.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35391
17-03-17 21:56:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:45.218 -07 000000382 INF: FPGA: Recv ZSGSRD 35387
17-03-17 21:56:45.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:45.228 -07 000000415 INF: FPGA: Recv ZPIEZORD 31392
17-03-17 21:56:45.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:45.238 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -8.8 V.
17-03-17 21:56:45.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35394 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35394 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35387 (-166.8 uncal um), Max = 35398 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:56:45.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35394, posNoise = 4, negNoise = 7
17-03-17 21:56:45.238 -07 000000610 INF: Z Motor: After move to -0.167691, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:45.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:56:45.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:45.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:45.238 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:45.238 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:45.238 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:45.238 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:45.238 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:45.238 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:45.238 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 21:56:45.238 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:45.238 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:56:45.238 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:45.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:56:45.248 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:45.248 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:45.248 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:45.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:56:45.258 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:56:45.258 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:56:45.258 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:56:45.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36809 150\n [Camera]
17-03-17 21:56:45.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:45.828 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.000345,
17-03-17 21:56:45.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:45.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:45.898 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:45.898 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:45.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:56:45.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:45.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:45.908 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:45.908 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:45.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1459256440, 0x0, 418435064) start.
17-03-17 21:56:46.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36809 827
17-03-17 21:56:46.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:46.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1459256440, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:56:46.288 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:56:46.288 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:46.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:56:46.288 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:56:46.288 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:46.288 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:56:46.298 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:56:46.298 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:56:46.308 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:56:46.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:46.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:46.458 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:46.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:46.458 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:46.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:56:46.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:46.458 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:46.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:46.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:56:46.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:46.648 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:46.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36809 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-17 21:56:46.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:46.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167701916556622. ------
17-03-17 21:56:46.648 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:46.648 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17394 mm
17-03-17 21:56:46.648 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:46.658 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37998, sync = True, waitForSettling = False)
17-03-17 21:56:46.658 -07 000000433 INF: Z Motor: Moving to -0.173944 mm, started at -0.167702 mm, distance = -6.24 um
17-03-17 21:56:46.658 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:46.658 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:56:46.658 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:56:46.658 -07 000000458 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:56:46.658 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:46.768 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:46.768 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:56:46.778 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:56:46.778 -07 000000458 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:46.778 -07 000000458 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:46.778 -07 000000458 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:56:46.778 -07 000000433 INF: FPGA: Xmit ZDACW 37998\n [Z Motor]
17-03-17 21:56:46.778 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 21:56:46.788 -07 000000433 INF: FPGA: 'ZDACW 37998' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-17 21:56:46.788 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:46.798 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:46.798 -07 000000486 INF: FPGA: Recv ZDACR 37998
17-03-17 21:56:46.808 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:46.808 -07 000000433 INF: Z Motor: MoveAbsStepped took 147 ms (did NOT wait for settling yet))
17-03-17 21:56:46.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:56:46.848 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:56:46.848 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:46.848 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:46.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:56:46.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:56:46.848 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:46.858 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:56:46.858 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:46.858 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:56:46.858 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:46.858 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 90 ms to get response, and 203 ms overall
17-03-17 21:56:46.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:46.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:47.158 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:56:47.158 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:56:47.198 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:47.208 -07 000000486 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:56:47.208 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:56:47.208 -07 000000458 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:47.208 -07 000000458 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:56:47.208 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 21:56:48.158 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:48.158 -07 000000627 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:56:48.168 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:48.168 -07 000000458 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:48.188 -07 000000458 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:48.188 -07 000000458 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:48.188 -07 000000458 INF: Y Motor: Moved to 72.3491 after 1531 ms (table move)
17-03-17 21:56:48.188 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173944 mm (DAC = 37998)
17-03-17 21:56:48.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.198 -07 000000458 INF: FPGA: Recv ZSGSRD 36367
17-03-17 21:56:48.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:56:48.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36364
17-03-17 21:56:48.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:48.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.208 -07 000000569 INF: FPGA: Recv ZSGSRD 36362
17-03-17 21:56:48.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.218 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36373
17-03-17 21:56:48.228 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.228 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.228 -07 000000502 INF: FPGA: Recv ZSGSRD 36369
17-03-17 21:56:48.238 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:48.238 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36364
17-03-17 21:56:48.248 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.248 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.248 -07 000000415 INF: FPGA: Recv ZSGSRD 36367
17-03-17 21:56:48.258 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.258 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.258 -07 000000415 INF: FPGA: Recv ZSGSRD 36360
17-03-17 21:56:48.268 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.268 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.268 -07 000000415 INF: FPGA: Recv ZSGSRD 36366
17-03-17 21:56:48.278 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.278 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:48.278 -07 000000433 INF: FPGA: Recv ZSGSRD 36370
17-03-17 21:56:48.288 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.288 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:48.288 -07 000000569 INF: FPGA: Recv ZPIEZORD 32687
17-03-17 21:56:48.298 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.298 -07 000000424 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.2 V.
17-03-17 21:56:48.298 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36366 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36366 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36360 (-173.0 uncal um), Max = 36373 (-173.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:56:48.298 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36366, posNoise = 7, negNoise = 6
17-03-17 21:56:48.298 -07 000000424 INF: Z Motor: After move to -0.173944, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:48.298 -07 000000424 INF: Z Motor: Settle wait time = 1534 ms, measure time = 104 ms (allowed 150 ms), total time = 1638 ms
17-03-17 21:56:48.298 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:48.348 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1690 ms
17-03-17 21:56:48.348 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:48.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:48.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:48.348 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:48.348 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:48.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:48.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:48.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:56:48.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:48.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:48.358 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:48.358 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:56:48.358 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:56:48.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:48.408 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:48.608 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:48.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:48.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:48.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:56:48.648 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:48.648 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:48.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:56:48.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:56:48.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:48.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:48.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:56:48.748 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:48.748 -07 000000486 INF: Autofocus start
17-03-17 21:56:48.748 -07 000000486 INF: MeasureProfile start
17-03-17 21:56:48.758 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:48.758 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 8 ms overall
17-03-17 21:56:48.758 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:48.758 -07 000000486 INF: MeasureProfile done
17-03-17 21:56:48.758 -07 000000486 INF: X=80  Z correction [um]=0.337546
17-03-17 21:56:48.758 -07 000000486 INF: Autofocus finished
17-03-17 21:56:48.958 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:48.958 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:56:48.958 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173946250758414. ----------
17-03-17 21:56:48.958 -07 000000610 INF: Cycle	57	Tile	16	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:48.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36584, sync = True, waitForSettling = True)
17-03-17 21:56:48.968 -07 000000610 INF: Z Motor: Moving to -0.167471 mm, started at -0.173946 mm, distance = 6.48 um
17-03-17 21:56:48.968 -07 000000610 INF: FPGA: Xmit ZDACW 36584\n [Z Motor]
17-03-17 21:56:48.968 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:56:48.978 -07 000000610 INF: FPGA: 'ZDACW 36584' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:48.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:48.978 -07 000000382 INF: FPGA: Recv ZDACR 36584
17-03-17 21:56:48.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:48.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.138 -07 000000458 INF: FPGA: Recv ZSGSRD 35357
17-03-17 21:56:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35359
17-03-17 21:56:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.158 -07 000000458 INF: FPGA: Recv ZSGSRD 35360
17-03-17 21:56:49.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.168 -07 000000433 INF: FPGA: Recv ZSGSRD 35359
17-03-17 21:56:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35355
17-03-17 21:56:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.188 -07 000000458 INF: FPGA: Recv ZSGSRD 35364
17-03-17 21:56:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35358
17-03-17 21:56:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.208 -07 000000415 INF: FPGA: Recv ZSGSRD 35358
17-03-17 21:56:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35359
17-03-17 21:56:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:49.228 -07 000000458 INF: FPGA: Recv ZSGSRD 35356
17-03-17 21:56:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:49.238 -07 000000415 INF: FPGA: Recv ZPIEZORD 31356
17-03-17 21:56:49.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:49.248 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.582 V. Piezo Error = -8.8 V.
17-03-17 21:56:49.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35358 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35358 (-166.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35355 (-166.6 uncal um), Max = 35364 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:56:49.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35358, posNoise = 6, negNoise = 3
17-03-17 21:56:49.248 -07 000000610 INF: Z Motor: After move to -0.167471, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:49.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:56:49.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:49.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:49.248 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:49.248 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:49.248 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:49.248 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:49.248 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:49.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:49.248 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:56:49.248 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:49.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:49.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:49.258 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:49.258 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:49.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:56:49.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:49.258 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:56:49.258 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:56:49.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:56:49.268 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:56:49.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36761 150\n [Camera]
17-03-17 21:56:49.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:49.908 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:49.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:49.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:49.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:49.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:49.918 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:49.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:49.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:56:49.918 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:49.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:56:50.098 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36761 827
17-03-17 21:56:50.248 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:50.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:56:50.298 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:56:50.298 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:50.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:56:50.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:56:50.298 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:50.298 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:50.298 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:50.298 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:56:50.308 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:56:50.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:50.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:50.468 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:50.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:50.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:50.468 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:50.578 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:50.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:56:50.578 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:50.578 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:56:50.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:50.658 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:50.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36761 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-17 21:56:50.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:50.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167470644919519. ------
17-03-17 21:56:50.658 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:50.658 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17397 mm
17-03-17 21:56:50.658 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:50.668 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:50.668 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:56:50.668 -07 000000458 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:56:50.668 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38004, sync = True, waitForSettling = False)
17-03-17 21:56:50.668 -07 000000382 INF: Z Motor: Moving to -0.173971 mm, started at -0.167471 mm, distance = -6.50 um
17-03-17 21:56:50.668 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:50.668 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:56:50.668 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:56:50.678 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:50.678 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:50.678 -07 000000458 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:50.678 -07 000000458 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:50.678 -07 000000458 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:56:50.688 -07 000000382 INF: FPGA: Xmit ZDACW 38004\n [Z Motor]
17-03-17 21:56:50.688 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:56:50.698 -07 000000382 INF: FPGA: 'ZDACW 38004' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:56:50.698 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:50.708 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:50.708 -07 000000569 INF: FPGA: Recv ZDACR 38004
17-03-17 21:56:50.718 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:56:50.718 -07 000000382 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:56:50.878 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:50.878 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 21:56:50.978 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:56:50.978 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:56:50.978 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:50.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:56:50.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:56:50.978 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:50.978 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:50.978 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:50.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 21:56:50.988 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 21:56:51.068 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:56:51.068 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:56:51.108 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:51.118 -07 000000486 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:56:51.118 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:56:51.118 -07 000000458 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:51.118 -07 000000458 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 21:56:51.118 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 21:56:51.188 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.016692,
17-03-17 21:56:51.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:51.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:52.068 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:52.068 -07 000000475 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:56:52.078 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.078 -07 000000458 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:52.098 -07 000000458 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:52.098 -07 000000458 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:52.098 -07 000000458 INF: Y Motor: Moved to 73.1758 after 1432 ms (table move)
17-03-17 21:56:52.098 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173971 mm (DAC = 38004)
17-03-17 21:56:52.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.108 -07 000000486 INF: FPGA: Recv ZSGSRD 36379
17-03-17 21:56:52.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:56:52.108 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.108 -07 000000569 INF: FPGA: Recv ZSGSRD 36369
17-03-17 21:56:52.118 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:56:52.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.118 -07 000000475 INF: FPGA: Recv ZSGSRD 36376
17-03-17 21:56:52.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.128 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.128 -07 000000569 INF: FPGA: Recv ZSGSRD 36367
17-03-17 21:56:52.138 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.138 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.138 -07 000000486 INF: FPGA: Recv ZSGSRD 36373
17-03-17 21:56:52.148 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.148 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.148 -07 000000382 INF: FPGA: Recv ZSGSRD 36379
17-03-17 21:56:52.158 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36367
17-03-17 21:56:52.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36366
17-03-17 21:56:52.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36365
17-03-17 21:56:52.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:52.188 -07 000000433 INF: FPGA: Recv ZSGSRD 36370
17-03-17 21:56:52.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.198 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:52.198 -07 000000486 INF: FPGA: Recv ZPIEZORD 32655
17-03-17 21:56:52.208 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.208 -07 000000576 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.2 V.
17-03-17 21:56:52.208 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36371 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36370 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36365 (-173.1 uncal um), Max = 36379 (-173.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:56:52.208 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36371, posNoise = 8, negNoise = 6
17-03-17 21:56:52.208 -07 000000576 INF: Z Motor: After move to -0.173971, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:52.208 -07 000000576 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:56:52.208 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:52.258 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:56:52.258 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:52.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:52.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:52.258 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:52.258 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:52.258 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:52.258 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:52.258 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:52.258 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:52.258 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:52.258 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:52.278 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:56:52.278 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:56:52.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:52.328 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:52.528 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:52.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:52.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:52.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 21:56:52.568 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:52.568 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:52.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:56:52.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:56:52.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:52.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:52.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:56:52.668 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:52.668 -07 000000486 INF: Autofocus start
17-03-17 21:56:52.668 -07 000000486 INF: MeasureProfile start
17-03-17 21:56:52.668 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:52.678 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:56:52.678 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:52.688 -07 000000486 INF: MeasureProfile done
17-03-17 21:56:52.688 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:56:52.688 -07 000000486 INF: Autofocus finished
17-03-17 21:56:52.878 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:52.878 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:56:52.878 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173978371819123. ----------
17-03-17 21:56:52.878 -07 000000610 INF: Cycle	57	Tile	17	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:52.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36501, sync = True, waitForSettling = True)
17-03-17 21:56:52.888 -07 000000610 INF: Z Motor: Moving to -0.167091 mm, started at -0.173978 mm, distance = 6.89 um
17-03-17 21:56:52.888 -07 000000610 INF: FPGA: Xmit ZDACW 36501\n [Z Motor]
17-03-17 21:56:52.888 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:56:52.898 -07 000000610 INF: FPGA: 'ZDACW 36501' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:52.898 -07 000000012 INF: FPGA: Recv ZDACR 36501
17-03-17 21:56:52.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:52.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:53.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.058 -07 000000458 INF: FPGA: Recv ZSGSRD 35300
17-03-17 21:56:53.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.068 -07 000000012 INF: FPGA: Recv ZSGSRD 35303
17-03-17 21:56:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.078 -07 000000475 INF: FPGA: Recv ZSGSRD 35303
17-03-17 21:56:53.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35302
17-03-17 21:56:53.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.098 -07 000000569 INF: FPGA: Recv ZSGSRD 35301
17-03-17 21:56:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.108 -07 000000012 INF: FPGA: Recv ZSGSRD 35296
17-03-17 21:56:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35304
17-03-17 21:56:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.128 -07 000000475 INF: FPGA: Recv ZSGSRD 35298
17-03-17 21:56:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35296
17-03-17 21:56:53.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:53.148 -07 000000486 INF: FPGA: Recv ZSGSRD 35305
17-03-17 21:56:53.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:53.158 -07 000000486 INF: FPGA: Recv ZPIEZORD 31246
17-03-17 21:56:53.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:53.168 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -8.9 V.
17-03-17 21:56:53.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35296 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:56:53.168 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 4, negNoise = 5
17-03-17 21:56:53.168 -07 000000610 INF: Z Motor: After move to -0.167091, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:53.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:56:53.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:53.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:53.168 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:53.168 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:53.168 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:53.168 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:53.168 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:53.168 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:53.168 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:53.168 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:53.168 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:53.168 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:53.168 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:53.168 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:53.178 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:56:53.178 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:53.178 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:56:53.178 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:56:53.188 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:56:53.188 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:56:53.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36678 150\n [Camera]
17-03-17 21:56:53.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:53.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:53.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:53.828 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:53.828 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:53.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:53.838 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:53.838 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:53.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:56:53.838 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:53.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:56:54.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36678 827
17-03-17 21:56:54.168 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:54.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 363 ms.
17-03-17 21:56:54.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 363 ms.
17-03-17 21:56:54.198 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:54.208 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:54.208 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:56:54.208 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:56:54.208 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:54.218 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:54.218 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:56:54.218 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:56:54.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:54.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:54.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:54.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:54.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:54.388 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:54.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:54.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:56:54.398 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:54.398 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:56:54.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:56:54.578 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:54.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36678 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-17 21:56:54.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:54.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.167104464827439. ------
17-03-17 21:56:54.578 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:54.578 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17338 mm
17-03-17 21:56:54.578 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:54.588 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:54.588 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37874, sync = True, waitForSettling = False)
17-03-17 21:56:54.588 -07 000000576 INF: Z Motor: Moving to -0.173376 mm, started at -0.167104 mm, distance = -6.27 um
17-03-17 21:56:54.588 -07 000000576 INF: FPGA: Xmit ZDACW 37874\n [Z Motor]
17-03-17 21:56:54.588 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:56:54.588 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:56:54.588 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:56:54.588 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:56:54.598 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:54.598 -07 000000576 INF: FPGA: 'ZDACW 37874' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:54.598 -07 000000012 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:56:54.608 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:56:54.608 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:54.608 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:54.608 -07 000000569 INF: Y Motor: Moving 1355 steps-34
17-03-17 21:56:54.608 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:54.618 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:54.618 -07 000000012 INF: FPGA: Recv ZDACR 37874
17-03-17 21:56:54.628 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:56:54.628 -07 000000576 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:56:54.628 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:54.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:56:54.798 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:56:54.798 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:54.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:56:54.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:56:54.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:54.798 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:54.798 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:54.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 21:56:54.808 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:54.808 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:56:54.808 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:56:54.998 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:56:54.998 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:56:55.028 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:55.038 -07 000000576 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:56:55.038 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 21:56:55.038 -07 000000569 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:55.038 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:56:55.038 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 21:56:55.988 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:55.988 -07 000000576 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:56:55.998 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:55.998 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:56.008 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:56.008 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:56:56.008 -07 000000569 INF: Y Motor: Moved to 74.0078 after 1425 ms (table move)
17-03-17 21:56:56.018 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173376 mm (DAC = 37874)
17-03-17 21:56:56.018 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.018 -07 000000458 INF: FPGA: Recv ZSGSRD 36278
17-03-17 21:56:56.028 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:56.028 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36280
17-03-17 21:56:56.038 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.038 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.038 -07 000000012 INF: FPGA: Recv ZSGSRD 36282
17-03-17 21:56:56.048 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.048 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.048 -07 000000569 INF: FPGA: Recv ZSGSRD 36282
17-03-17 21:56:56.058 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.058 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.058 -07 000000012 INF: FPGA: Recv ZSGSRD 36280
17-03-17 21:56:56.068 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.068 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.068 -07 000000569 INF: FPGA: Recv ZSGSRD 36278
17-03-17 21:56:56.078 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.078 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.078 -07 000000458 INF: FPGA: Recv ZSGSRD 36275
17-03-17 21:56:56.088 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.088 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.088 -07 000000569 INF: FPGA: Recv ZSGSRD 36276
17-03-17 21:56:56.098 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.098 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.098 -07 000000569 INF: FPGA: Recv ZSGSRD 36276
17-03-17 21:56:56.108 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.108 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.108 -07 000000475 INF: FPGA: Recv ZSGSRD 36284
17-03-17 21:56:56.118 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.118 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:56.118 -07 000000569 INF: FPGA: Recv ZPIEZORD 32564
17-03-17 21:56:56.128 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.128 -07 000000433 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.779 V. Piezo Error = -8.2 V.
17-03-17 21:56:56.128 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36279 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36279 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36275 (-172.5 uncal um), Max = 36284 (-172.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:56:56.128 -07 000000433 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36279, posNoise = 5, negNoise = 4
17-03-17 21:56:56.128 -07 000000433 INF: Z Motor: After move to -0.173376, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:56.128 -07 000000433 INF: Z Motor: Settle wait time = 1430 ms, measure time = 108 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:56:56.128 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:56:56.178 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:56:56.178 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:56:56.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:56.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:56.178 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:56.178 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:56.178 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:56:56.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:56.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:56.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:56:56.188 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:56:56.188 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:56:56.198 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:56:56.198 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:56:56.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:56:56.248 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:56:56.448 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:56:56.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:56:56.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:56:56.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 21:56:56.488 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:56:56.488 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:56:56.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:56:56.548 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.99219,
17-03-17 21:56:56.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:56:56.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:56.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:56:56.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:56:56.588 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:56.588 -07 000000576 INF: Autofocus start
17-03-17 21:56:56.588 -07 000000576 INF: MeasureProfile start
17-03-17 21:56:56.588 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:56.598 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:56.598 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:56:56.608 -07 000000576 INF: MeasureProfile done
17-03-17 21:56:56.608 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:56:56.608 -07 000000576 INF: Autofocus finished
17-03-17 21:56:56.798 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:56:56.798 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:56:56.798 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173387344302081. ----------
17-03-17 21:56:56.808 -07 000000610 INF: Cycle	57	Tile	18	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:56:56.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36407, sync = True, waitForSettling = True)
17-03-17 21:56:56.808 -07 000000610 INF: Z Motor: Moving to -0.166661 mm, started at -0.173387 mm, distance = 6.73 um
17-03-17 21:56:56.808 -07 000000610 INF: FPGA: Xmit ZDACW 36407\n [Z Motor]
17-03-17 21:56:56.808 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:56:56.818 -07 000000610 INF: FPGA: 'ZDACW 36407' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:56:56.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:56.818 -07 000000433 INF: FPGA: Recv ZDACR 36407
17-03-17 21:56:56.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:56:56.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:56:56.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:56:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.978 -07 000000415 INF: FPGA: Recv ZSGSRD 35238
17-03-17 21:56:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.988 -07 000000475 INF: FPGA: Recv ZSGSRD 35242
17-03-17 21:56:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:56.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35230
17-03-17 21:56:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.008 -07 000000433 INF: FPGA: Recv ZSGSRD 35234
17-03-17 21:56:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.018 -07 000000458 INF: FPGA: Recv ZSGSRD 35230
17-03-17 21:56:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35232
17-03-17 21:56:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.038 -07 000000547 INF: FPGA: Recv ZSGSRD 35237
17-03-17 21:56:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.048 -07 000000415 INF: FPGA: Recv ZSGSRD 35229
17-03-17 21:56:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.058 -07 000000012 INF: FPGA: Recv ZSGSRD 35234
17-03-17 21:56:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:57.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35239
17-03-17 21:56:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:56:57.078 -07 000000569 INF: FPGA: Recv ZPIEZORD 31195
17-03-17 21:56:57.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:57.088 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.555 V. Piezo Error = -8.9 V.
17-03-17 21:56:57.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35234 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35229 (-165.8 uncal um), Max = 35242 (-165.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:56:57.088 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35234, posNoise = 8, negNoise = 5
17-03-17 21:56:57.088 -07 000000610 INF: Z Motor: After move to -0.166661, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:56:57.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:56:57.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:56:57.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:56:57.088 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:56:57.088 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:56:57.088 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:56:57.088 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:56:57.088 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:56:57.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:56:57.088 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:56:57.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:56:57.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:56:57.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:56:57.098 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:56:57.098 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:56:57.098 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:56:57.098 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:56:57.108 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:56:57.108 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:56:57.108 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:56:57.108 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:56:57.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36584 150\n [Camera]
17-03-17 21:56:57.308 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:56:57.748 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:56:57.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:56:57.748 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:57.748 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:56:57.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:56:57.758 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:57.758 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:57.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 21:56:57.758 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:57.758 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 21:56:57.938 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36584 827
17-03-17 21:56:58.088 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:56:58.128 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:56:58.128 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:56:58.128 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:58.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:56:58.138 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:56:58.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:58.138 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:58.138 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:56:58.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:56:58.148 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:56:58.308 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:56:58.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:56:58.308 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:56:58.308 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:56:58.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:56:58.308 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:56:58.428 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:56:58.428 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 21:56:58.428 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:56:58.428 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:56:58.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1385
17-03-17 21:56:58.498 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:56:58.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36584 150' command took 2 ms to send, 1386 ms to get response, and 1392 ms overall
17-03-17 21:56:58.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:56:58.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166674042613941. ------
17-03-17 21:56:58.508 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17305 mm
17-03-17 21:56:58.508 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:56:58.508 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:56:58.508 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:56:58.508 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37803, sync = True, waitForSettling = False)
17-03-17 21:56:58.508 -07 000000433 INF: Z Motor: Moving to -0.173051 mm, started at -0.166674 mm, distance = -6.38 um
17-03-17 21:56:58.508 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:56:58.508 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:56:58.518 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:58.518 -07 000000433 INF: FPGA: Xmit ZDACW 37803\n [Z Motor]
17-03-17 21:56:58.518 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:56:58.528 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:58.528 -07 000000433 INF: FPGA: 'ZDACW 37803' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:56:58.528 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:56:58.538 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:56:58.538 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:56:58.538 -07 000000502 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:58.538 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:56:58.538 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:56:58.548 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:56:58.548 -07 000000569 INF: FPGA: Recv ZDACR 37803
17-03-17 21:56:58.558 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:56:58.558 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:56:58.558 -07 000000433 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:56:58.738 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:56:58.738 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:56:58.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:56:58.808 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:56:58.808 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:58.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:56:58.808 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:56:58.808 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:56:58.818 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:58.818 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:56:58.818 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 21:56:58.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 21:56:58.928 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:56:58.928 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-17 21:56:58.958 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:58.958 -07 000000576 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:56:58.968 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:56:58.968 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:58.968 -07 000000502 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:56:58.968 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-17 21:56:59.918 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:56:59.918 -07 000000547 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:56:59.928 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:56:59.928 -07 000000502 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:56:59.938 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:56:59.938 -07 000000502 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:56:59.938 -07 000000502 INF: Y Motor: Moved to 74.8315 after 1428 ms (table move)
17-03-17 21:56:59.948 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173051 mm (DAC = 37803)
17-03-17 21:56:59.948 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:59.948 -07 000000547 INF: FPGA: Recv ZSGSRD 36229
17-03-17 21:56:59.958 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:59.958 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:59.958 -07 000000502 INF: FPGA: Recv ZSGSRD 36221
17-03-17 21:56:59.968 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:59.968 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:59.968 -07 000000569 INF: FPGA: Recv ZSGSRD 36224
17-03-17 21:56:59.978 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:59.978 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:59.978 -07 000000576 INF: FPGA: Recv ZSGSRD 36232
17-03-17 21:56:59.988 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:59.988 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:59.988 -07 000000433 INF: FPGA: Recv ZSGSRD 36231
17-03-17 21:56:59.998 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:56:59.998 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:56:59.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36217
17-03-17 21:57:00.008 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.008 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.008 -07 000000569 INF: FPGA: Recv ZSGSRD 36229
17-03-17 21:57:00.018 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.018 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36224
17-03-17 21:57:00.028 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.028 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.028 -07 000000569 INF: FPGA: Recv ZSGSRD 36226
17-03-17 21:57:00.038 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.038 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.038 -07 000000502 INF: FPGA: Recv ZSGSRD 36222
17-03-17 21:57:00.048 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.048 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:00.048 -07 000000569 INF: FPGA: Recv ZPIEZORD 32511
17-03-17 21:57:00.058 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.058 -07 000000424 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.2 V.
17-03-17 21:57:00.058 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36226 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36225 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36217 (-172.1 uncal um), Max = 36232 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:57:00.058 -07 000000424 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36226, posNoise = 6, negNoise = 9
17-03-17 21:57:00.058 -07 000000424 INF: Z Motor: After move to -0.173051, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:00.058 -07 000000424 INF: Z Motor: Settle wait time = 1432 ms, measure time = 110 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:57:00.058 -07 000000424 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:00.098 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 21:57:00.098 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:00.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:00.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:00.098 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:00.098 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:00.098 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:00.098 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:00.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:00.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:00.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:00.108 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:00.118 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:57:00.118 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:57:00.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:00.168 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:00.368 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:00.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:00.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:00.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 21:57:00.408 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:00.408 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:00.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:57:00.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:57:00.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:00.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:00.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:57:00.508 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:00.508 -07 000000415 INF: Autofocus start
17-03-17 21:57:00.508 -07 000000415 INF: MeasureProfile start
17-03-17 21:57:00.508 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:00.518 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:00.518 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:00.518 -07 000000415 INF: MeasureProfile done
17-03-17 21:57:00.518 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:57:00.518 -07 000000415 INF: Autofocus finished
17-03-17 21:57:00.718 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:00.718 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:00.718 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.173046861058567. ----------
17-03-17 21:57:00.718 -07 000000610 INF: Cycle	57	Tile	19	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:00.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36336, sync = True, waitForSettling = True)
17-03-17 21:57:00.728 -07 000000610 INF: Z Motor: Moving to -0.166336 mm, started at -0.173047 mm, distance = 6.71 um
17-03-17 21:57:00.728 -07 000000610 INF: FPGA: Xmit ZDACW 36336\n [Z Motor]
17-03-17 21:57:00.728 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:57:00.738 -07 000000610 INF: FPGA: 'ZDACW 36336' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:57:00.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:00.738 -07 000000415 INF: FPGA: Recv ZDACR 36336
17-03-17 21:57:00.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:00.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.898 -07 000000433 INF: FPGA: Recv ZSGSRD 35177
17-03-17 21:57:00.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:00.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.908 -07 000000415 INF: FPGA: Recv ZSGSRD 35180
17-03-17 21:57:00.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.918 -07 000000433 INF: FPGA: Recv ZSGSRD 35189
17-03-17 21:57:00.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.928 -07 000000424 INF: FPGA: Recv ZSGSRD 35178
17-03-17 21:57:00.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.938 -07 000000547 INF: FPGA: Recv ZSGSRD 35183
17-03-17 21:57:00.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.948 -07 000000424 INF: FPGA: Recv ZSGSRD 35183
17-03-17 21:57:00.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.958 -07 000000576 INF: FPGA: Recv ZSGSRD 35187
17-03-17 21:57:00.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.968 -07 000000424 INF: FPGA: Recv ZSGSRD 35185
17-03-17 21:57:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35179
17-03-17 21:57:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:00.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35183
17-03-17 21:57:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:00.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:00.998 -07 000000576 INF: FPGA: Recv ZPIEZORD 31114
17-03-17 21:57:01.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:01.008 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.0 V.
17-03-17 21:57:01.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35182 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35183 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35177 (-165.4 uncal um), Max = 35189 (-165.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:01.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35182, posNoise = 7, negNoise = 5
17-03-17 21:57:01.008 -07 000000610 INF: Z Motor: After move to -0.166336, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:01.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:57:01.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:01.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:01.008 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:01.008 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:01.008 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:01.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:01.008 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:01.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:01.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:01.008 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:01.008 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:01.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:01.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:57:01.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:01.018 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:01.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:01.028 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:01.028 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:57:01.028 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:57:01.028 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:57:01.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 36513 150\n [Camera]
17-03-17 21:57:01.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:01.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:01.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:01.668 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:01.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:01.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:01.668 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:01.678 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:01.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 21:57:01.678 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:01.678 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:57:01.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36513 827
17-03-17 21:57:01.908 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.997626,
17-03-17 21:57:01.928 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:01.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:02.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:02.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:57:02.048 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:57:02.048 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:02.048 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:57:02.048 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:57:02.058 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:02.058 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:02.058 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:57:02.168 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 21:57:02.178 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 21:57:02.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:02.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:02.228 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:02.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:02.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:02.228 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:02.228 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:02.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:57:02.238 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:02.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) start.
17-03-17 21:57:02.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:02.418 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:02.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 36513 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-17 21:57:02.628 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:57:02.628 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:57:02.628 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:02.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:57:02.628 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:57:02.628 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:02.628 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:02.628 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:02.628 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:57:02.628 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:57:02.638 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:57:02.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:57:02.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:57:02.718 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:57:02.718 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:57:02.718 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:57:02.718 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 21:57:02.728 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:57:02.728 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:57:03.228 -07 000000424 INF: FPGA: Recv EMIN
17-03-17 21:57:03.228 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:57:03.228 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:57:03.228 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 21:57:03.238 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:03.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:03.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166339983582569. ------
17-03-17 21:57:03.238 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:03.238 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14048 mm
17-03-17 21:57:03.238 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:03.238 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:57:03.238 -07 000000547 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:57:03.238 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:03.248 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:03.248 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30688, sync = True, waitForSettling = False)
17-03-17 21:57:03.248 -07 000000382 INF: Z Motor: Moving to -0.140481 mm, started at -0.166340 mm, distance = 25.86 um
17-03-17 21:57:03.248 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:03.248 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:57:03.258 -07 000000547 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:57:03.258 -07 000000547 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:03.258 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:03.258 -07 000000547 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:57:03.258 -07 000000547 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:57:03.268 -07 000000382 INF: FPGA: Xmit ZDACW 30688\n [Z Motor]
17-03-17 21:57:03.268 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:57:03.278 -07 000000382 INF: FPGA: 'ZDACW 30688' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:03.278 -07 000000547 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:57:03.288 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:03.288 -07 000000502 INF: FPGA: Recv ZDACR 30688
17-03-17 21:57:03.298 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:57:03.298 -07 000000382 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:57:03.458 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:03.458 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 21:57:04.898 -07 000000459 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:57:04.898 -07 000000547 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1641 ms overall
17-03-17 21:57:04.898 -07 000000547 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:57:04.898 -07 000000547 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:57:04.898 -07 000000547 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.919 mm, average velocity = 9.086 mm/sec
17-03-17 21:57:06.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:06.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:07.268 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.978563,
17-03-17 21:57:07.748 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:07.748 -07 000000576 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:57:07.758 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.758 -07 000000547 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:07.788 -07 000000547 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:07.788 -07 000000547 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 21:57:07.788 -07 000000547 INF: Y Motor: Moved to 59.9111 after 4543 ms
17-03-17 21:57:07.788 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140481 mm (DAC = 30688)
17-03-17 21:57:07.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.788 -07 000000415 INF: FPGA: Recv ZSGSRD 31171
17-03-17 21:57:07.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:07.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.798 -07 000000569 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:57:07.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.808 -07 000000382 INF: FPGA: Recv ZSGSRD 31152
17-03-17 21:57:07.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.818 -07 000000569 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:57:07.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.828 -07 000000459 INF: FPGA: Recv ZSGSRD 31163
17-03-17 21:57:07.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.838 -07 000000415 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:57:07.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.848 -07 000000459 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:57:07.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.858 -07 000000569 INF: FPGA: Recv ZSGSRD 31162
17-03-17 21:57:07.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.868 -07 000000382 INF: FPGA: Recv ZSGSRD 31162
17-03-17 21:57:07.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:07.878 -07 000000569 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:57:07.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.888 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:07.888 -07 000000576 INF: FPGA: Recv ZPIEZORD 26905
17-03-17 21:57:07.898 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:07.898 -07 000000627 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.4 V.
17-03-17 21:57:07.898 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31159 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31156 (-139.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 31152 (-139.6 uncal um), Max = 31171 (-139.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:57:07.898 -07 000000627 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31159, posNoise = 12, negNoise = 7
17-03-17 21:57:07.898 -07 000000627 INF: Z Motor: After move to -0.140481, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:07.898 -07 000000627 INF: Z Motor: Settle wait time = 4545 ms, measure time = 105 ms (allowed 150 ms), total time = 4650 ms
17-03-17 21:57:07.898 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:07.948 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 21:57:07.948 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:07.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:07.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:07.948 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:07.948 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:07.948 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:07.948 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:07.948 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:07.948 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:57:07.978 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:57:07.978 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:07.978 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:57:07.978 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:07.988 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:57:07.988 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 21:57:07.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:08.038 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:08.238 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:08.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:08.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:08.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 21:57:08.278 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:08.278 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:08.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 288 ms overall
17-03-17 21:57:08.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:57:08.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:08.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:08.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:57:08.478 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:08.478 -07 000000569 INF: Image SNR check: start
17-03-17 21:57:08.478 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:08.488 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:08.488 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:08.488 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=56.67]
17-03-17 21:57:08.488 -07 000000569 INF: Autofocus start
17-03-17 21:57:08.488 -07 000000569 INF: MeasureProfile start
17-03-17 21:57:08.498 -07 000000569 INF: MeasureProfile done
17-03-17 21:57:08.498 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:57:08.498 -07 000000569 INF: Autofocus finished
17-03-17 21:57:08.688 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:08.688 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:08.688 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140495378136265. ----------
17-03-17 21:57:08.688 -07 000000610 INF: Cycle	57	Tile	1	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:08.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29195, sync = True, waitForSettling = True)
17-03-17 21:57:08.698 -07 000000610 INF: Z Motor: Moving to -0.133646 mm, started at -0.140495 mm, distance = 6.85 um
17-03-17 21:57:08.698 -07 000000610 INF: FPGA: Xmit ZDACW 29195\n [Z Motor]
17-03-17 21:57:08.698 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:57:08.708 -07 000000610 INF: FPGA: 'ZDACW 29195' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:08.708 -07 000000382 INF: FPGA: Recv ZDACR 29195
17-03-17 21:57:08.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:08.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.868 -07 000000382 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:57:08.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:08.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.878 -07 000000415 INF: FPGA: Recv ZSGSRD 30098
17-03-17 21:57:08.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30090
17-03-17 21:57:08.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.898 -07 000000459 INF: FPGA: Recv ZSGSRD 30092
17-03-17 21:57:08.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.908 -07 000000415 INF: FPGA: Recv ZSGSRD 30090
17-03-17 21:57:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30092
17-03-17 21:57:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.928 -07 000000627 INF: FPGA: Recv ZSGSRD 30094
17-03-17 21:57:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30094
17-03-17 21:57:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30091
17-03-17 21:57:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:08.958 -07 000000576 INF: FPGA: Recv ZSGSRD 30093
17-03-17 21:57:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:08.968 -07 000000415 INF: FPGA: Recv ZPIEZORD 25766
17-03-17 21:57:08.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:08.978 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.455 V. Piezo Error = -9.5 V.
17-03-17 21:57:08.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30093 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30092 (-132.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30090 (-132.8 uncal um), Max = 30098 (-132.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:57:08.978 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30093, posNoise = 5, negNoise = 3
17-03-17 21:57:08.978 -07 000000610 INF: Z Motor: After move to -0.133646, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:08.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:57:08.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:08.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:08.978 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:08.978 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:08.978 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:08.978 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:08.978 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:08.978 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:08.978 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:08.978 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:08.978 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:08.978 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:57:08.978 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:08.978 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:08.988 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:08.988 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:57:08.998 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 21:57:08.998 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:09.008 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:57:09.008 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:09.008 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:57:09.008 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 21:57:09.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29372 150\n [Camera]
17-03-17 21:57:09.218 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:09.658 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:09.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:09.658 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:09.658 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:09.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:57:09.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:09.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:09.658 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:09.668 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:09.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:57:09.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29372 827
17-03-17 21:57:09.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:10.038 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:57:10.038 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:57:10.038 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:10.038 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:57:10.038 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:57:10.038 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:10.048 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:57:10.048 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:57:10.048 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:57:10.048 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:57:10.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:10.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:10.218 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:10.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:10.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:10.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:10.218 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:10.218 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:57:10.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:10.228 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:57:10.408 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:10.408 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:10.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29372 150' command took 2 ms to send, 1381 ms to get response, and 1389 ms overall
17-03-17 21:57:10.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:10.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133647167993147. ------
17-03-17 21:57:10.408 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:10.408 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14012 mm
17-03-17 21:57:10.408 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:10.408 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30608, sync = True, waitForSettling = False)
17-03-17 21:57:10.408 -07 000000382 INF: Z Motor: Moving to -0.140114 mm, started at -0.133647 mm, distance = -6.47 um
17-03-17 21:57:10.408 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:10.408 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:57:10.408 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 21:57:10.418 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:10.418 -07 000000382 INF: FPGA: Xmit ZDACW 30608\n [Z Motor]
17-03-17 21:57:10.418 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:57:10.428 -07 000000382 INF: FPGA: 'ZDACW 30608' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:57:10.428 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:10.428 -07 000000486 INF: FPGA: Recv ZDACR 30608
17-03-17 21:57:10.438 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:10.438 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:10.438 -07 000000382 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:57:10.448 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:10.448 -07 000000486 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:57:10.458 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 40 ms overall
17-03-17 21:57:10.458 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:10.458 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:10.458 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-17 21:57:10.458 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:10.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:57:10.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:57:10.598 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:10.598 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:57:10.598 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:57:10.598 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:10.608 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:10.608 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:57:10.608 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:10.608 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:57:10.638 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:10.638 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:57:10.828 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:57:10.828 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:57:10.868 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:10.868 -07 000000458 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:57:10.878 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:10.878 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:10.878 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:57:10.878 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.831 mm, average velocity = 2.200 mm/sec
17-03-17 21:57:11.828 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:11.828 -07 000000431 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:57:11.838 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:11.838 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:11.858 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:11.858 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:57:11.858 -07 000000576 INF: Y Motor: Moved to 60.7334 after 1445 ms (table move)
17-03-17 21:57:11.858 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140114 mm (DAC = 30608)
17-03-17 21:57:11.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.868 -07 000000569 INF: FPGA: Recv ZSGSRD 31107
17-03-17 21:57:11.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:57:11.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.868 -07 000000486 INF: FPGA: Recv ZSGSRD 31102
17-03-17 21:57:11.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:57:11.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.878 -07 000000458 INF: FPGA: Recv ZSGSRD 31104
17-03-17 21:57:11.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.888 -07 000000547 INF: FPGA: Recv ZSGSRD 31099
17-03-17 21:57:11.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.898 -07 000000433 INF: FPGA: Recv ZSGSRD 31107
17-03-17 21:57:11.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.908 -07 000000486 INF: FPGA: Recv ZSGSRD 31098
17-03-17 21:57:11.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.918 -07 000000547 INF: FPGA: Recv ZSGSRD 31098
17-03-17 21:57:11.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.928 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:11.928 -07 000000486 INF: FPGA: Recv ZSGSRD 31097
17-03-17 21:57:11.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.938 -07 000000576 INF: FPGA: Recv ZSGSRD 31099
17-03-17 21:57:11.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:11.948 -07 000000431 INF: FPGA: Recv ZSGSRD 31109
17-03-17 21:57:11.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.958 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:11.958 -07 000000576 INF: FPGA: Recv ZPIEZORD 27122
17-03-17 21:57:11.968 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:11.968 -07 000000627 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.670 V. Piezo Error = -8.8 V.
17-03-17 21:57:11.968 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31102 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31100 (-139.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31097 (-139.3 uncal um), Max = 31109 (-139.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:11.968 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31102, posNoise = 7, negNoise = 5
17-03-17 21:57:11.968 -07 000000627 INF: Z Motor: After move to -0.140114, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:11.968 -07 000000627 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:57:11.968 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:12.018 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:57:12.018 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:12.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:12.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:12.018 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:12.018 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:12.018 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:12.018 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:12.018 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:12.018 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:12.028 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:12.028 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:12.038 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:57:12.038 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:57:12.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:12.078 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:12.278 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:12.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:12.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:12.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 21:57:12.318 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:12.318 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:12.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:57:12.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:57:12.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:12.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:12.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:57:12.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:12.518 -07 000000431 INF: Autofocus start
17-03-17 21:57:12.518 -07 000000431 INF: MeasureProfile start
17-03-17 21:57:12.518 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:12.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:12.528 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:12.528 -07 000000431 INF: MeasureProfile done
17-03-17 21:57:12.528 -07 000000431 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:57:12.528 -07 000000431 INF: Autofocus finished
17-03-17 21:57:12.628 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.985358,
17-03-17 21:57:12.728 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:12.728 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:12.728 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140129198044184. ----------
17-03-17 21:57:12.728 -07 000000610 INF: Cycle	57	Tile	2	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:12.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29103, sync = True, waitForSettling = True)
17-03-17 21:57:12.738 -07 000000610 INF: Z Motor: Moving to -0.133225 mm, started at -0.140129 mm, distance = 6.90 um
17-03-17 21:57:12.738 -07 000000610 INF: FPGA: Xmit ZDACW 29103\n [Z Motor]
17-03-17 21:57:12.738 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:57:12.748 -07 000000610 INF: FPGA: 'ZDACW 29103' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:57:12.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:12.748 -07 000000627 INF: FPGA: Recv ZDACR 29103
17-03-17 21:57:12.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:12.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.908 -07 000000576 INF: FPGA: Recv ZSGSRD 30030
17-03-17 21:57:12.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:57:12.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.928 -07 000000576 INF: FPGA: Recv ZSGSRD 30028
17-03-17 21:57:12.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.938 -07 000000486 INF: FPGA: Recv ZSGSRD 30023
17-03-17 21:57:12.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30028
17-03-17 21:57:12.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.958 -07 000000431 INF: FPGA: Recv ZSGSRD 30032
17-03-17 21:57:12.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.968 -07 000000433 INF: FPGA: Recv ZSGSRD 30027
17-03-17 21:57:12.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30026
17-03-17 21:57:12.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.988 -07 000000486 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:57:12.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:12.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:12.998 -07 000000433 INF: FPGA: Recv ZSGSRD 30031
17-03-17 21:57:13.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:13.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:13.008 -07 000000458 INF: FPGA: Recv ZPIEZORD 25698
17-03-17 21:57:13.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:13.018 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.5 V.
17-03-17 21:57:13.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30028 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30028 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30023 (-132.4 uncal um), Max = 30032 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:13.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30028, posNoise = 4, negNoise = 5
17-03-17 21:57:13.018 -07 000000610 INF: Z Motor: After move to -0.133225, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:13.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:57:13.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:13.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:13.018 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:13.018 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:13.018 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:13.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:13.018 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:13.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:13.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:13.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:13.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:13.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:13.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:13.028 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:13.028 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:57:13.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:13.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:57:13.038 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:57:13.038 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:57:13.038 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:57:13.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29280 150\n [Camera]
17-03-17 21:57:13.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:13.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:13.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:13.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:13.688 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:13.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:13.688 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:13.798 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:13.798 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 21:57:13.798 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:13.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:57:13.878 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29280 827
17-03-17 21:57:14.028 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:14.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:57:14.178 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:57:14.178 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:14.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:57:14.188 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:57:14.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:14.188 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:14.188 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:14.188 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 21:57:14.188 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 21:57:14.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:14.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:14.238 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:14.248 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:14.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:14.248 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:14.248 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:14.248 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:57:14.248 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:14.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:57:14.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:14.438 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:14.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29280 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 21:57:14.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:14.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133229594203933. ------
17-03-17 21:57:14.438 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:14.438 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13955 mm
17-03-17 21:57:14.438 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:14.448 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:14.448 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:14.448 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:14.448 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:57:14.448 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 21:57:14.448 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30485, sync = True, waitForSettling = False)
17-03-17 21:57:14.448 -07 000000475 INF: Z Motor: Moving to -0.139551 mm, started at -0.133230 mm, distance = -6.32 um
17-03-17 21:57:14.468 -07 000000475 INF: FPGA: Xmit ZDACW 30485\n [Z Motor]
17-03-17 21:57:14.468 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:57:14.478 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:14.478 -07 000000475 INF: FPGA: 'ZDACW 30485' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:57:14.478 -07 000000627 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:57:14.488 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 36 ms overall
17-03-17 21:57:14.488 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:14.488 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:14.488 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:57:14.498 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:14.498 -07 000000458 INF: FPGA: Recv ZDACR 30485
17-03-17 21:57:14.508 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:14.508 -07 000000475 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:57:14.508 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:14.648 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:14.648 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:14.648 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:57:14.648 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:57:14.648 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:14.648 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:57:14.648 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:57:14.648 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:14.648 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:14.648 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:57:14.658 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:14.658 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:57:14.878 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 21:57:14.878 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:57:14.918 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:14.918 -07 000000486 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:57:14.928 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:14.928 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:14.928 -07 000000576 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:57:14.928 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:57:15.878 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:15.878 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:57:15.888 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:15.888 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:15.908 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:15.908 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:57:15.908 -07 000000576 INF: Y Motor: Moved to 61.5640 after 1461 ms (table move)
17-03-17 21:57:15.918 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139551 mm (DAC = 30485)
17-03-17 21:57:15.918 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.918 -07 000000502 INF: FPGA: Recv ZSGSRD 31007
17-03-17 21:57:15.928 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.928 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.928 -07 000000502 INF: FPGA: Recv ZSGSRD 31013
17-03-17 21:57:15.938 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.938 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.938 -07 000000486 INF: FPGA: Recv ZSGSRD 31016
17-03-17 21:57:15.948 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.948 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.948 -07 000000486 INF: FPGA: Recv ZSGSRD 31018
17-03-17 21:57:15.958 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.958 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.958 -07 000000486 INF: FPGA: Recv ZSGSRD 31012
17-03-17 21:57:15.968 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.968 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.968 -07 000000486 INF: FPGA: Recv ZSGSRD 31010
17-03-17 21:57:15.978 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.978 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.978 -07 000000486 INF: FPGA: Recv ZSGSRD 31005
17-03-17 21:57:15.988 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.988 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.988 -07 000000486 INF: FPGA: Recv ZSGSRD 31006
17-03-17 21:57:15.998 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:15.998 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:15.998 -07 000000486 INF: FPGA: Recv ZSGSRD 31019
17-03-17 21:57:16.008 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:16.008 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:16.008 -07 000000569 INF: FPGA: Recv ZSGSRD 31013
17-03-17 21:57:16.018 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:16.018 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:16.018 -07 000000576 INF: FPGA: Recv ZPIEZORD 27035
17-03-17 21:57:16.028 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:16.028 -07 000000424 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.652 V. Piezo Error = -8.8 V.
17-03-17 21:57:16.028 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31012 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31012 (-138.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31005 (-138.7 uncal um), Max = 31019 (-138.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:57:16.028 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31012, posNoise = 7, negNoise = 7
17-03-17 21:57:16.028 -07 000000424 INF: Z Motor: After move to -0.139551, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:16.028 -07 000000424 INF: Z Motor: Settle wait time = 1466 ms, measure time = 110 ms (allowed 150 ms), total time = 1576 ms
17-03-17 21:57:16.028 -07 000000424 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:16.068 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-17 21:57:16.068 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:16.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:16.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:16.068 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:16.068 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:16.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:16.068 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:16.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:16.068 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:16.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:16.078 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:16.078 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:57:16.078 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:57:16.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:16.128 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:16.328 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:16.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:16.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:16.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) start.
17-03-17 21:57:16.368 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:16.368 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:16.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:57:16.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199785120, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:57:16.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:16.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:16.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:57:16.578 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:16.578 -07 000000459 INF: Autofocus start
17-03-17 21:57:16.578 -07 000000459 INF: MeasureProfile start
17-03-17 21:57:16.578 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:16.588 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:16.588 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:16.588 -07 000000459 INF: MeasureProfile done
17-03-17 21:57:16.588 -07 000000459 INF: X=48  Z correction [um]=0.2069503
17-03-17 21:57:16.588 -07 000000459 INF: Autofocus finished
17-03-17 21:57:16.788 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:16.788 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:16.788 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139551018951426. ----------
17-03-17 21:57:16.798 -07 000000610 INF: Cycle	57	Tile	3	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:16.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29043, sync = True, waitForSettling = True)
17-03-17 21:57:16.798 -07 000000610 INF: Z Motor: Moving to -0.132950 mm, started at -0.139551 mm, distance = 6.60 um
17-03-17 21:57:16.798 -07 000000610 INF: FPGA: Xmit ZDACW 29043\n [Z Motor]
17-03-17 21:57:16.798 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:57:16.808 -07 000000610 INF: FPGA: 'ZDACW 29043' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:57:16.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:16.808 -07 000000486 INF: FPGA: Recv ZDACR 29043
17-03-17 21:57:16.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:16.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:16.928 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:16.968 -07 000000431 INF: FPGA: Recv ZSGSRD 29988
17-03-17 21:57:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:16.978 -07 000000502 INF: FPGA: Recv ZSGSRD 29980
17-03-17 21:57:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:16.988 -07 000000431 INF: FPGA: Recv ZSGSRD 29984
17-03-17 21:57:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:16.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:16.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29990
17-03-17 21:57:17.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:17.008 -07 000000424 INF: FPGA: Recv ZSGSRD 29980
17-03-17 21:57:17.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:17.018 -07 000000502 INF: FPGA: Recv ZSGSRD 29986
17-03-17 21:57:17.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:17.028 -07 000000627 INF: FPGA: Recv ZSGSRD 29996
17-03-17 21:57:17.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:17.038 -07 000000502 INF: FPGA: Recv ZSGSRD 29985
17-03-17 21:57:17.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:17.048 -07 000000576 INF: FPGA: Recv ZSGSRD 29981
17-03-17 21:57:17.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:17.058 -07 000000569 INF: FPGA: Recv ZSGSRD 29982
17-03-17 21:57:17.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:17.068 -07 000000424 INF: FPGA: Recv ZPIEZORD 25694
17-03-17 21:57:17.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:17.078 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.4 V.
17-03-17 21:57:17.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29985 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29984 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29980 (-132.1 uncal um), Max = 29996 (-132.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:17.078 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29985, posNoise = 11, negNoise = 5
17-03-17 21:57:17.078 -07 000000610 INF: Z Motor: After move to -0.132950, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:17.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:57:17.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:17.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:17.078 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:17.078 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:17.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:17.078 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:17.078 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:17.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:17.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:17.078 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:17.078 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:57:17.078 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:17.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:17.088 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:17.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:57:17.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:17.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:17.098 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:57:17.098 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:57:17.098 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:57:17.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29219 150\n [Camera]
17-03-17 21:57:17.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:17.738 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:17.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:17.748 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:17.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:17.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:17.748 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:17.748 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:17.748 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 21:57:17.748 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:17.748 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:57:17.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29219 827
17-03-17 21:57:17.988 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.015368,
17-03-17 21:57:18.088 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:18.148 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:57:18.148 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:57:18.148 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:18.148 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:57:18.148 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:57:18.148 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:18.148 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:18.148 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:57:18.148 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:18.158 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:57:18.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:18.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:18.298 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:18.308 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:18.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:18.308 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:18.308 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:18.308 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:57:18.308 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:18.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2214461200, 0x0, 418435064) start.
17-03-17 21:57:18.488 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:18.488 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:18.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29219 150' command took 2 ms to send, 1386 ms to get response, and 1389 ms overall
17-03-17 21:57:18.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:18.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132953353081837. ------
17-03-17 21:57:18.498 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:18.498 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13926 mm
17-03-17 21:57:18.498 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:18.498 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:57:18.498 -07 000000415 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:57:18.498 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30422, sync = True, waitForSettling = False)
17-03-17 21:57:18.498 -07 000000431 INF: Z Motor: Moving to -0.139263 mm, started at -0.132953 mm, distance = -6.31 um
17-03-17 21:57:18.508 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:18.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:18.508 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:18.508 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:57:18.518 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:57:18.518 -07 000000415 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:18.518 -07 000000415 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:18.518 -07 000000415 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:57:18.518 -07 000000431 INF: FPGA: Xmit ZDACW 30422\n [Z Motor]
17-03-17 21:57:18.518 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:57:18.528 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:18.528 -07 000000431 INF: FPGA: 'ZDACW 30422' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:57:18.538 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:18.548 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:18.548 -07 000000576 INF: FPGA: Recv ZDACR 30422
17-03-17 21:57:18.558 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:18.558 -07 000000431 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:57:18.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2214461200, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:57:18.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:57:18.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:18.698 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:57:18.698 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:57:18.698 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:18.698 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:18.698 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:18.698 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:57:18.708 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:57:18.728 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:18.728 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:57:18.908 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:57:18.908 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 21:57:18.948 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:18.948 -07 000000012 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:57:18.958 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:18.958 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:18.958 -07 000000415 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:57:18.958 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 21:57:19.908 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:19.908 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:57:19.918 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:19.918 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:19.938 -07 000000415 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:19.938 -07 000000415 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:57:19.938 -07 000000415 INF: Y Motor: Moved to 62.3955 after 1436 ms (table move)
17-03-17 21:57:19.938 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139263 mm (DAC = 30422)
17-03-17 21:57:19.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.948 -07 000000547 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:57:19.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:57:19.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.948 -07 000000547 INF: FPGA: Recv ZSGSRD 30969
17-03-17 21:57:19.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:19.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30966
17-03-17 21:57:19.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:19.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.968 -07 000000547 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:57:19.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:19.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.978 -07 000000382 INF: FPGA: Recv ZSGSRD 30971
17-03-17 21:57:19.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:19.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.988 -07 000000382 INF: FPGA: Recv ZSGSRD 30968
17-03-17 21:57:19.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:19.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:19.998 -07 000000382 INF: FPGA: Recv ZSGSRD 30968
17-03-17 21:57:20.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:20.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:20.008 -07 000000475 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:57:20.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:20.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:20.018 -07 000000547 INF: FPGA: Recv ZSGSRD 30968
17-03-17 21:57:20.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:20.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:20.028 -07 000000475 INF: FPGA: Recv ZSGSRD 30970
17-03-17 21:57:20.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:20.038 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:20.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 26963
17-03-17 21:57:20.048 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:20.048 -07 000000627 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -8.8 V.
17-03-17 21:57:20.048 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30969 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30968 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30958 (-138.4 uncal um), Max = 30975 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:57:20.048 -07 000000627 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30969, posNoise = 6, negNoise = 11
17-03-17 21:57:20.048 -07 000000627 INF: Z Motor: After move to -0.139263, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:20.048 -07 000000627 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:57:20.048 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:20.098 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:57:20.098 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:20.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:20.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:20.098 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:20.098 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:20.098 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:20.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:20.098 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:57:20.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:20.108 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:20.108 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:20.108 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:57:20.108 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:57:20.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:20.158 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:20.358 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:20.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:20.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:20.478 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:20.478 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:20.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 351 ms to get response, and 359 ms overall
17-03-17 21:57:20.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2249883464, 0x0, 559484976) start.
17-03-17 21:57:20.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2249883464, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:57:20.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:20.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:20.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 229 ms.
17-03-17 21:57:20.678 -07 000000627 INF: Autofocus start
17-03-17 21:57:20.678 -07 000000627 INF: MeasureProfile start
17-03-17 21:57:20.678 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:20.678 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:20.688 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:20.688 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:20.688 -07 000000627 INF: MeasureProfile done
17-03-17 21:57:20.688 -07 000000627 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:57:20.688 -07 000000627 INF: Autofocus finished
17-03-17 21:57:20.888 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:20.888 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:57:20.898 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.13927477782933. ----------
17-03-17 21:57:20.898 -07 000000610 INF: Cycle	57	Tile	4	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:20.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28963, sync = True, waitForSettling = True)
17-03-17 21:57:20.898 -07 000000610 INF: Z Motor: Moving to -0.132584 mm, started at -0.139275 mm, distance = 6.69 um
17-03-17 21:57:20.898 -07 000000610 INF: FPGA: Xmit ZDACW 28963\n [Z Motor]
17-03-17 21:57:20.898 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:57:20.908 -07 000000610 INF: FPGA: 'ZDACW 28963' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:57:20.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:20.908 -07 000000627 INF: FPGA: Recv ZDACR 28963
17-03-17 21:57:20.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:20.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:21.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.068 -07 000000627 INF: FPGA: Recv ZSGSRD 29926
17-03-17 21:57:21.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:21.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.078 -07 000000012 INF: FPGA: Recv ZSGSRD 29929
17-03-17 21:57:21.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.088 -07 000000576 INF: FPGA: Recv ZSGSRD 29929
17-03-17 21:57:21.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:57:21.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29924
17-03-17 21:57:21.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.118 -07 000000576 INF: FPGA: Recv ZSGSRD 29935
17-03-17 21:57:21.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29935
17-03-17 21:57:21.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29930
17-03-17 21:57:21.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29926
17-03-17 21:57:21.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:21.158 -07 000000576 INF: FPGA: Recv ZSGSRD 29931
17-03-17 21:57:21.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:21.168 -07 000000576 INF: FPGA: Recv ZPIEZORD 25608
17-03-17 21:57:21.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:21.178 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.5 V.
17-03-17 21:57:21.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29929 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29929 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29923 (-131.8 uncal um), Max = 29935 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:57:21.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29929, posNoise = 6, negNoise = 6
17-03-17 21:57:21.178 -07 000000610 INF: Z Motor: After move to -0.132584, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:21.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:57:21.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:21.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:21.178 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:21.178 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:21.178 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:21.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:21.178 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:21.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:21.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:21.178 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:21.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:57:21.178 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:21.188 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:21.188 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:21.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:21.188 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:21.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:21.198 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:57:21.198 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:57:21.198 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:57:21.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29139 150\n [Camera]
17-03-17 21:57:21.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:21.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:21.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:21.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:21.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:21.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:21.848 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:21.848 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:21.848 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 21:57:21.848 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:21.848 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:57:21.928 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:22.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29139 827
17-03-17 21:57:22.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:22.248 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:57:22.248 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:57:22.248 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:22.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:57:22.248 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:57:22.248 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:22.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:22.248 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:57:22.248 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:22.258 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:57:22.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:22.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:22.398 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:22.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:22.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:22.398 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:22.408 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:22.408 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:57:22.408 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:22.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 21:57:22.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:57:22.588 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:22.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29139 150' command took 4 ms to send, 1386 ms to get response, and 1390 ms overall
17-03-17 21:57:22.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:22.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132593597201899. ------
17-03-17 21:57:22.598 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13934 mm
17-03-17 21:57:22.598 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:22.598 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:22.598 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:57:22.598 -07 000000433 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:57:22.598 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:22.598 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30439, sync = True, waitForSettling = False)
17-03-17 21:57:22.598 -07 000000424 INF: Z Motor: Moving to -0.139341 mm, started at -0.132594 mm, distance = -6.75 um
17-03-17 21:57:22.608 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:22.608 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:22.608 -07 000000576 INF: FPGA: Recv YRDPOS 127787
17-03-17 21:57:22.618 -07 000000424 INF: FPGA: Xmit ZDACW 30439\n [Z Motor]
17-03-17 21:57:22.618 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:57:22.618 -07 000000433 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:22.618 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:57:22.618 -07 000000433 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:22.618 -07 000000433 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:57:22.628 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:22.628 -07 000000424 INF: FPGA: 'ZDACW 30439' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:57:22.638 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:22.648 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:22.648 -07 000000576 INF: FPGA: Recv ZDACR 30439
17-03-17 21:57:22.658 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:22.658 -07 000000424 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:57:22.798 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:57:22.798 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:57:22.798 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:22.808 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:57:22.808 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:57:22.808 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:22.808 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:22.808 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:57:22.808 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:57:22.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:57:22.828 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:22.828 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:57:23.008 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:57:23.008 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:57:23.048 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:23.058 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:57:23.058 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:57:23.058 -07 000000433 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:23.058 -07 000000433 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:57:23.058 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 21:57:23.348 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.023489,
17-03-17 21:57:24.008 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:24.008 -07 000000012 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:57:24.018 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:24.018 -07 000000433 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:24.038 -07 000000433 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:24.038 -07 000000433 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:57:24.038 -07 000000433 INF: Y Motor: Moved to 63.2241 after 1439 ms (table move)
17-03-17 21:57:24.038 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139341 mm (DAC = 30439)
17-03-17 21:57:24.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30988
17-03-17 21:57:24.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:57:24.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.048 -07 000000424 INF: FPGA: Recv ZSGSRD 30979
17-03-17 21:57:24.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:57:24.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.058 -07 000000433 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:57:24.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30986
17-03-17 21:57:24.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.078 -07 000000415 INF: FPGA: Recv ZSGSRD 30986
17-03-17 21:57:24.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30982
17-03-17 21:57:24.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30985
17-03-17 21:57:24.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.108 -07 000000433 INF: FPGA: Recv ZSGSRD 30972
17-03-17 21:57:24.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.118 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.118 -07 000000459 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:57:24.128 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:57:24.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.138 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:24.138 -07 000000012 INF: FPGA: Recv ZPIEZORD 27021
17-03-17 21:57:24.148 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.148 -07 000000627 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.645 V. Piezo Error = -8.7 V.
17-03-17 21:57:24.148 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30980 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30980 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30972 (-138.5 uncal um), Max = 30988 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:57:24.148 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30980, posNoise = 8, negNoise = 8
17-03-17 21:57:24.148 -07 000000627 INF: Z Motor: After move to -0.139341, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:24.148 -07 000000627 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:57:24.148 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:24.198 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:57:24.198 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:24.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:24.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:24.198 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:24.198 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:24.198 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:24.198 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:24.208 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:57:24.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:24.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:24.208 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:24.218 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:57:24.218 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:57:24.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:24.258 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:24.458 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:24.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:24.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:24.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:57:24.498 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:24.498 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:24.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:57:24.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:57:24.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:24.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:57:24.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:57:24.598 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:24.598 -07 000000459 INF: Autofocus start
17-03-17 21:57:24.598 -07 000000459 INF: MeasureProfile start
17-03-17 21:57:24.598 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:24.608 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:24.608 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:24.618 -07 000000459 INF: MeasureProfile done
17-03-17 21:57:24.618 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:57:24.618 -07 000000459 INF: Autofocus finished
17-03-17 21:57:24.808 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:24.808 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:24.808 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139345444162889. ----------
17-03-17 21:57:24.808 -07 000000610 INF: Cycle	57	Tile	5	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:24.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28934, sync = True, waitForSettling = True)
17-03-17 21:57:24.818 -07 000000610 INF: Z Motor: Moving to -0.132451 mm, started at -0.139345 mm, distance = 6.89 um
17-03-17 21:57:24.818 -07 000000610 INF: FPGA: Xmit ZDACW 28934\n [Z Motor]
17-03-17 21:57:24.818 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:57:24.828 -07 000000610 INF: FPGA: 'ZDACW 28934' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:24.828 -07 000000415 INF: FPGA: Recv ZDACR 28934
17-03-17 21:57:24.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:24.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.988 -07 000000415 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:57:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:24.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:24.998 -07 000000424 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:57:25.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.008 -07 000000459 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:57:25.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.018 -07 000000012 INF: FPGA: Recv ZSGSRD 29902
17-03-17 21:57:25.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.028 -07 000000424 INF: FPGA: Recv ZSGSRD 29900
17-03-17 21:57:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.038 -07 000000433 INF: FPGA: Recv ZSGSRD 29916
17-03-17 21:57:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.048 -07 000000475 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:57:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.058 -07 000000576 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:57:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.068 -07 000000459 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:57:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:25.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:57:25.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:25.088 -07 000000012 INF: FPGA: Recv ZPIEZORD 25627
17-03-17 21:57:25.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:25.098 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.4 V.
17-03-17 21:57:25.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29908 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29909 (-131.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29916 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:57:25.098 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29908, posNoise = 8, negNoise = 8
17-03-17 21:57:25.098 -07 000000610 INF: Z Motor: After move to -0.132451, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:25.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:57:25.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:25.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:25.098 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:25.098 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:25.098 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:25.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:25.098 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:25.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:25.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:57:25.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:25.098 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:57:25.098 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:25.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:25.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:25.108 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:25.108 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:25.118 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 21:57:25.118 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:57:25.118 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:57:25.118 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:57:25.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29111 150\n [Camera]
17-03-17 21:57:25.318 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:25.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:25.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:25.768 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:25.768 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:25.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:25.768 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:25.768 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:25.768 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:57:25.778 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:25.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:57:25.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29111 827
17-03-17 21:57:26.108 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 979
17-03-17 21:57:26.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:57:26.158 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:57:26.158 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:26.158 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:57:26.158 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:57:26.158 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:26.158 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:26.168 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:26.168 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:57:26.168 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:57:26.318 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:26.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:26.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:26.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:26.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:26.428 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:26.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:26.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:57:26.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:26.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:57:26.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:26.508 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:26.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29111 150' command took 2 ms to send, 1377 ms to get response, and 1390 ms overall
17-03-17 21:57:26.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:26.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132458688746922. ------
17-03-17 21:57:26.518 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:26.518 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13890 mm
17-03-17 21:57:26.518 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:26.518 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:26.518 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:57:26.518 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 21:57:26.518 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30342, sync = True, waitForSettling = False)
17-03-17 21:57:26.518 -07 000000458 INF: Z Motor: Moving to -0.138897 mm, started at -0.132459 mm, distance = -6.44 um
17-03-17 21:57:26.528 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:26.528 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:26.528 -07 000000475 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:57:26.538 -07 000000458 INF: FPGA: Xmit ZDACW 30342\n [Z Motor]
17-03-17 21:57:26.538 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:57:26.538 -07 000000433 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:26.538 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:57:26.538 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:26.538 -07 000000433 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:57:26.548 -07 000000458 INF: FPGA: 'ZDACW 30342' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:57:26.548 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:26.558 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:26.568 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:26.568 -07 000000475 INF: FPGA: Recv ZDACR 30342
17-03-17 21:57:26.578 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:26.578 -07 000000458 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:57:26.748 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:26.748 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:57:26.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:57:26.828 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:57:26.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:26.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:57:26.828 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:57:26.828 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:26.838 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:26.838 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 21:57:26.838 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:26.838 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 21:57:26.928 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:26.928 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:57:26.928 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-17 21:57:26.968 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:26.968 -07 000000475 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:57:26.978 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:26.978 -07 000000433 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:26.978 -07 000000433 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 21:57:26.978 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.139 mm/sec
17-03-17 21:57:27.928 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:27.928 -07 000000459 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:57:27.938 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:27.938 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:27.958 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:27.958 -07 000000433 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:57:27.958 -07 000000433 INF: Y Motor: Moved to 64.0571 after 1434 ms (table move)
17-03-17 21:57:27.958 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138897 mm (DAC = 30342)
17-03-17 21:57:27.958 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:27.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30914
17-03-17 21:57:27.968 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:27.968 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:27.968 -07 000000458 INF: FPGA: Recv ZSGSRD 30909
17-03-17 21:57:27.978 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:27.978 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:27.978 -07 000000475 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:57:27.988 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:27.988 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:27.988 -07 000000382 INF: FPGA: Recv ZSGSRD 30914
17-03-17 21:57:27.998 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:27.998 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:27.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30914
17-03-17 21:57:28.008 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.008 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.008 -07 000000459 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:57:28.018 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.018 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.018 -07 000000424 INF: FPGA: Recv ZSGSRD 30912
17-03-17 21:57:28.028 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.028 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.028 -07 000000433 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:57:28.038 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.038 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.038 -07 000000424 INF: FPGA: Recv ZSGSRD 30907
17-03-17 21:57:28.048 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.048 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30909
17-03-17 21:57:28.058 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.058 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:28.058 -07 000000424 INF: FPGA: Recv ZPIEZORD 26976
17-03-17 21:57:28.068 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.068 -07 000000012 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -8.7 V.
17-03-17 21:57:28.068 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30912 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30913 (-138.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30907 (-138.1 uncal um), Max = 30914 (-138.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:28.068 -07 000000012 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30912, posNoise = 2, negNoise = 5
17-03-17 21:57:28.068 -07 000000012 INF: Z Motor: After move to -0.138897, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:28.068 -07 000000012 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:57:28.068 -07 000000012 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:28.118 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:57:28.118 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:28.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:28.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:28.118 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:28.118 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:28.118 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:28.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:28.128 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:28.128 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:28.128 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:28.128 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:28.128 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:57:28.128 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:57:28.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:28.178 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:28.378 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:28.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:28.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:28.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:57:28.418 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:28.418 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:28.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:57:28.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:57:28.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:28.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:28.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:57:28.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:28.518 -07 000000424 INF: Autofocus start
17-03-17 21:57:28.518 -07 000000424 INF: MeasureProfile start
17-03-17 21:57:28.518 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:28.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:28.528 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:28.538 -07 000000424 INF: MeasureProfile done
17-03-17 21:57:28.538 -07 000000424 INF: X=-2  Z correction [um]=-0.01313862
17-03-17 21:57:28.538 -07 000000424 INF: Autofocus finished
17-03-17 21:57:28.708 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.99219,
17-03-17 21:57:28.728 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:28.728 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:28.728 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13890859773725. ----------
17-03-17 21:57:28.728 -07 000000610 INF: Cycle	57	Tile	6	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:28.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28852, sync = True, waitForSettling = True)
17-03-17 21:57:28.738 -07 000000610 INF: Z Motor: Moving to -0.132076 mm, started at -0.138909 mm, distance = 6.83 um
17-03-17 21:57:28.748 -07 000000610 INF: FPGA: Xmit ZDACW 28852\n [Z Motor]
17-03-17 21:57:28.748 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:57:28.758 -07 000000610 INF: FPGA: 'ZDACW 28852' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:57:28.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:28.758 -07 000000459 INF: FPGA: Recv ZDACR 28852
17-03-17 21:57:28.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.918 -07 000000012 INF: FPGA: Recv ZSGSRD 29850
17-03-17 21:57:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.928 -07 000000475 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:57:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.938 -07 000000012 INF: FPGA: Recv ZSGSRD 29841
17-03-17 21:57:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.948 -07 000000475 INF: FPGA: Recv ZSGSRD 29850
17-03-17 21:57:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.958 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-17 21:57:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:57:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29858
17-03-17 21:57:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.978 -07 000000458 INF: FPGA: Recv ZSGSRD 29853
17-03-17 21:57:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.988 -07 000000382 INF: FPGA: Recv ZSGSRD 29851
17-03-17 21:57:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:28.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29862
17-03-17 21:57:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:29.008 -07 000000431 INF: FPGA: Recv ZSGSRD 29843
17-03-17 21:57:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:29.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:29.018 -07 000000458 INF: FPGA: Recv ZPIEZORD 25582
17-03-17 21:57:29.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:29.028 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.4 V.
17-03-17 21:57:29.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29851 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29841 (-131.2 uncal um), Max = 29862 (-131.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:57:29.028 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29851, posNoise = 11, negNoise = 10
17-03-17 21:57:29.028 -07 000000610 INF: Z Motor: After move to -0.132076, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:29.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 21:57:29.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:29.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:29.028 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:29.028 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:29.028 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:29.028 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:29.028 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:29.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:29.028 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:29.028 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:29.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:29.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:29.038 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:29.038 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:29.038 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:29.038 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:29.038 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:29.038 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:57:29.038 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:57:29.038 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:57:29.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 29029 150\n [Camera]
17-03-17 21:57:29.248 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:29.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:29.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:29.688 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:29.688 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:29.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:29.698 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:29.808 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:29.808 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:57:29.808 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:29.808 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:57:29.878 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29029 827
17-03-17 21:57:30.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:30.198 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:57:30.198 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:57:30.198 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:30.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:57:30.208 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:57:30.208 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:30.208 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:30.208 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 21:57:30.208 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:30.218 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 21:57:30.248 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:30.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:30.248 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:30.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:30.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:30.248 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:30.258 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:30.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:57:30.258 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:30.258 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:57:30.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:57:30.438 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:30.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 29029 150' command took 2 ms to send, 1384 ms to get response, and 1389 ms overall
17-03-17 21:57:30.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:30.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132092508654841. ------
17-03-17 21:57:30.448 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:30.448 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13864 mm
17-03-17 21:57:30.448 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:30.448 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:30.448 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:57:30.448 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30286, sync = True, waitForSettling = False)
17-03-17 21:57:30.448 -07 000000502 INF: Z Motor: Moving to -0.138640 mm, started at -0.132093 mm, distance = -6.55 um
17-03-17 21:57:30.448 -07 000000431 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:57:30.458 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:30.458 -07 000000502 INF: FPGA: Xmit ZDACW 30286\n [Z Motor]
17-03-17 21:57:30.458 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:57:30.468 -07 000000502 INF: FPGA: 'ZDACW 30286' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:57:30.468 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:30.468 -07 000000627 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:57:30.478 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:30.478 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:57:30.478 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:30.478 -07 000000431 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:30.478 -07 000000431 INF: Y Motor: Moving 1337 steps-12
17-03-17 21:57:30.488 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:30.488 -07 000000476 INF: FPGA: Recv ZDACR 30286
17-03-17 21:57:30.498 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:30.498 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:30.498 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:57:30.648 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:57:30.648 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:57:30.648 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:30.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:57:30.648 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:57:30.648 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:30.648 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:30.648 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:30.648 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:57:30.658 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:57:30.678 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:30.678 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:57:30.868 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:57:30.868 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:57:30.908 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:30.908 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:57:30.918 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:57:30.918 -07 000000431 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:30.918 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:57:30.918 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 21:57:31.868 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:31.868 -07 000000458 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:57:31.878 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:31.878 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:31.898 -07 000000431 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:31.898 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:57:31.898 -07 000000431 INF: Y Motor: Moved to 64.8794 after 1449 ms (table move)
17-03-17 21:57:31.898 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138640 mm (DAC = 30286)
17-03-17 21:57:31.898 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.908 -07 000000576 INF: FPGA: Recv ZSGSRD 30869
17-03-17 21:57:31.908 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:57:31.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.908 -07 000000475 INF: FPGA: Recv ZSGSRD 30877
17-03-17 21:57:31.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:57:31.918 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.918 -07 000000459 INF: FPGA: Recv ZSGSRD 30865
17-03-17 21:57:31.928 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.928 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.928 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:31.928 -07 000000458 INF: FPGA: Recv ZSGSRD 30871
17-03-17 21:57:31.938 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.938 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30877
17-03-17 21:57:31.948 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.948 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.948 -07 000000431 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:57:31.958 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.958 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:57:31.968 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.968 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.968 -07 000000431 INF: FPGA: Recv ZSGSRD 30878
17-03-17 21:57:31.978 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.978 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.978 -07 000000459 INF: FPGA: Recv ZSGSRD 30861
17-03-17 21:57:31.988 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.988 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:31.988 -07 000000431 INF: FPGA: Recv ZSGSRD 30869
17-03-17 21:57:31.998 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:31.998 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:31.998 -07 000000459 INF: FPGA: Recv ZPIEZORD 26894
17-03-17 21:57:32.008 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.008 -07 000000433 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.8 V.
17-03-17 21:57:32.008 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30873 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30874 (-137.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30861 (-137.8 uncal um), Max = 30885 (-137.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:57:32.008 -07 000000433 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30873, posNoise = 12, negNoise = 12
17-03-17 21:57:32.008 -07 000000433 INF: Z Motor: After move to -0.138640, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:32.008 -07 000000433 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:57:32.008 -07 000000433 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:32.058 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 21:57:32.058 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:32.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:32.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:32.058 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:32.058 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:32.058 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:32.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:32.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:32.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:32.068 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:32.068 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:32.078 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:57:32.078 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:57:32.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:32.118 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:32.318 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:32.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:32.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:32.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 21:57:32.358 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:32.358 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:32.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:57:32.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:57:32.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:32.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:32.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:57:32.458 -07 000000458 INF: Autofocus start
17-03-17 21:57:32.458 -07 000000458 INF: MeasureProfile start
17-03-17 21:57:32.458 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:32.458 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:32.468 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:32.468 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:32.468 -07 000000458 INF: MeasureProfile done
17-03-17 21:57:32.468 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:57:32.468 -07 000000458 INF: Autofocus finished
17-03-17 21:57:32.668 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:32.668 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:57:32.668 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138658053463721. ----------
17-03-17 21:57:32.678 -07 000000610 INF: Cycle	57	Tile	7	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:32.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28810, sync = True, waitForSettling = True)
17-03-17 21:57:32.678 -07 000000610 INF: Z Motor: Moving to -0.131884 mm, started at -0.138658 mm, distance = 6.77 um
17-03-17 21:57:32.678 -07 000000610 INF: FPGA: Xmit ZDACW 28810\n [Z Motor]
17-03-17 21:57:32.678 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:57:32.688 -07 000000610 INF: FPGA: 'ZDACW 28810' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:32.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:32.688 -07 000000431 INF: FPGA: Recv ZDACR 28810
17-03-17 21:57:32.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:32.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.848 -07 000000433 INF: FPGA: Recv ZSGSRD 29812
17-03-17 21:57:32.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29819
17-03-17 21:57:32.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.868 -07 000000433 INF: FPGA: Recv ZSGSRD 29819
17-03-17 21:57:32.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.878 -07 000000431 INF: FPGA: Recv ZSGSRD 29817
17-03-17 21:57:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.888 -07 000000433 INF: FPGA: Recv ZSGSRD 29819
17-03-17 21:57:32.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.898 -07 000000459 INF: FPGA: Recv ZSGSRD 29818
17-03-17 21:57:32.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.908 -07 000000627 INF: FPGA: Recv ZSGSRD 29822
17-03-17 21:57:32.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.918 -07 000000433 INF: FPGA: Recv ZSGSRD 29814
17-03-17 21:57:32.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29815
17-03-17 21:57:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:32.938 -07 000000458 INF: FPGA: Recv ZSGSRD 29823
17-03-17 21:57:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:32.948 -07 000000627 INF: FPGA: Recv ZPIEZORD 25555
17-03-17 21:57:32.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:32.958 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.4 V.
17-03-17 21:57:32.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29818 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29818 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29812 (-131.1 uncal um), Max = 29823 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:57:32.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29818, posNoise = 5, negNoise = 6
17-03-17 21:57:32.958 -07 000000610 INF: Z Motor: After move to -0.131884, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:32.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:57:32.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:32.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:32.958 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:32.958 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:32.958 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:32.958 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:32.958 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:32.958 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:32.958 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:32.958 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:32.958 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:32.958 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:32.968 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:57:32.968 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:32.968 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:32.968 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:32.978 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:32.978 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:57:32.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:57:32.978 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:57:32.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28987 150\n [Camera]
17-03-17 21:57:33.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:33.618 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:33.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:33.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:33.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:33.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:33.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:33.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:33.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:57:33.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:33.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:57:33.808 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28987 827
17-03-17 21:57:33.958 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:34.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:57:34.008 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:57:34.008 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:34.018 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:57:34.018 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:57:34.018 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:34.018 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:34.018 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:57:34.018 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:34.028 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:57:34.068 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.014009,
17-03-17 21:57:34.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:34.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:34.178 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:34.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:34.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:34.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:34.188 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:34.188 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:57:34.188 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:34.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 21:57:34.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 21:57:34.368 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:34.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28987 150' command took 2 ms to send, 1386 ms to get response, and 1391 ms overall
17-03-17 21:57:34.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:34.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131880509654163. ------
17-03-17 21:57:34.378 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13863 mm
17-03-17 21:57:34.378 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:34.378 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:34.378 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:34.378 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:57:34.378 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30284, sync = True, waitForSettling = False)
17-03-17 21:57:34.378 -07 000000627 INF: Z Motor: Moving to -0.138631 mm, started at -0.131881 mm, distance = -6.75 um
17-03-17 21:57:34.378 -07 000000431 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 21:57:34.388 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:57:34.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:34.388 -07 000000476 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:57:34.398 -07 000000627 INF: FPGA: Xmit ZDACW 30284\n [Z Motor]
17-03-17 21:57:34.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:57:34.398 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:34.398 -07 000000431 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:34.398 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:57:34.398 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:57:34.408 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:34.408 -07 000000627 INF: FPGA: 'ZDACW 30284' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:57:34.418 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:34.428 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:34.428 -07 000000433 INF: FPGA: Recv ZDACR 30284
17-03-17 21:57:34.438 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:34.438 -07 000000627 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:57:34.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:57:34.578 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:57:34.578 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:34.578 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:57:34.578 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:57:34.578 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:34.588 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:34.588 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:34.588 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:57:34.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:57:34.608 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:34.608 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-17 21:57:34.788 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:57:34.788 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:57:34.828 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:34.838 -07 000000569 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:57:34.838 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:34.838 -07 000000431 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:34.838 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:57:34.838 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 21:57:35.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:35.788 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:57:35.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:35.798 -07 000000431 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:35.828 -07 000000431 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:35.828 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:57:35.828 -07 000000431 INF: Y Motor: Moved to 65.7144 after 1452 ms (table move)
17-03-17 21:57:35.838 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138631 mm (DAC = 30284)
17-03-17 21:57:35.838 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30877
17-03-17 21:57:35.848 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:35.848 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.848 -07 000000012 INF: FPGA: Recv ZSGSRD 30873
17-03-17 21:57:35.858 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.858 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.858 -07 000000458 INF: FPGA: Recv ZSGSRD 30873
17-03-17 21:57:35.868 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.868 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.868 -07 000000012 INF: FPGA: Recv ZSGSRD 30868
17-03-17 21:57:35.878 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.878 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.878 -07 000000458 INF: FPGA: Recv ZSGSRD 30872
17-03-17 21:57:35.888 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.888 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30866
17-03-17 21:57:35.898 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.898 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.898 -07 000000475 INF: FPGA: Recv ZSGSRD 30872
17-03-17 21:57:35.908 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.908 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.908 -07 000000433 INF: FPGA: Recv ZSGSRD 30872
17-03-17 21:57:35.918 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.918 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.918 -07 000000475 INF: FPGA: Recv ZSGSRD 30875
17-03-17 21:57:35.928 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.928 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:35.928 -07 000000012 INF: FPGA: Recv ZSGSRD 30876
17-03-17 21:57:35.938 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:35.948 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:35.948 -07 000000012 INF: FPGA: Recv ZPIEZORD 26955
17-03-17 21:57:35.958 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:57:35.958 -07 000000576 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.6 V.
17-03-17 21:57:35.958 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30872 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30866 (-137.8 uncal um), Max = 30877 (-137.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:57:35.958 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30872, posNoise = 5, negNoise = 6
17-03-17 21:57:35.958 -07 000000576 INF: Z Motor: After move to -0.138631, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:35.958 -07 000000576 INF: Z Motor: Settle wait time = 1456 ms, measure time = 117 ms (allowed 150 ms), total time = 1573 ms
17-03-17 21:57:35.958 -07 000000576 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:35.998 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 21:57:35.998 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:35.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:35.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:35.998 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:35.998 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:35.998 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:35.998 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:35.998 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:57:35.998 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:36.008 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:36.008 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:36.008 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:57:36.008 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:57:36.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:36.058 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:36.258 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:36.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:36.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:36.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 21:57:36.298 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:36.298 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:36.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 21:57:36.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:57:36.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:36.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:36.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:57:36.398 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:36.398 -07 000000502 INF: Autofocus start
17-03-17 21:57:36.398 -07 000000502 INF: MeasureProfile start
17-03-17 21:57:36.398 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:36.408 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:36.408 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:36.408 -07 000000502 INF: MeasureProfile done
17-03-17 21:57:36.408 -07 000000502 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:57:36.408 -07 000000502 INF: Autofocus finished
17-03-17 21:57:36.608 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:36.608 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:57:36.618 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138651629251579. ----------
17-03-17 21:57:36.618 -07 000000610 INF: Cycle	57	Tile	8	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:36.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28762, sync = True, waitForSettling = True)
17-03-17 21:57:36.618 -07 000000610 INF: Z Motor: Moving to -0.131664 mm, started at -0.138652 mm, distance = 6.99 um
17-03-17 21:57:36.618 -07 000000610 INF: FPGA: Xmit ZDACW 28762\n [Z Motor]
17-03-17 21:57:36.618 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:57:36.628 -07 000000610 INF: FPGA: 'ZDACW 28762' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:57:36.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:36.628 -07 000000433 INF: FPGA: Recv ZDACR 28762
17-03-17 21:57:36.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.788 -07 000000475 INF: FPGA: Recv ZSGSRD 29788
17-03-17 21:57:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29786
17-03-17 21:57:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.808 -07 000000475 INF: FPGA: Recv ZSGSRD 29779
17-03-17 21:57:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.818 -07 000000433 INF: FPGA: Recv ZSGSRD 29778
17-03-17 21:57:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.828 -07 000000627 INF: FPGA: Recv ZSGSRD 29790
17-03-17 21:57:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.838 -07 000000433 INF: FPGA: Recv ZSGSRD 29788
17-03-17 21:57:36.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.848 -07 000000475 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:57:36.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29782
17-03-17 21:57:36.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.868 -07 000000502 INF: FPGA: Recv ZSGSRD 29785
17-03-17 21:57:36.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:36.878 -07 000000433 INF: FPGA: Recv ZSGSRD 29785
17-03-17 21:57:36.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:36.888 -07 000000502 INF: FPGA: Recv ZPIEZORD 25501
17-03-17 21:57:36.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:36.898 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.4 V.
17-03-17 21:57:36.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29785 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29778 (-130.8 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:57:36.898 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29785, posNoise = 6, negNoise = 7
17-03-17 21:57:36.898 -07 000000610 INF: Z Motor: After move to -0.131664, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:36.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:57:36.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:36.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:36.898 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:36.898 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:36.898 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:36.898 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:36.898 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:36.898 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:36.898 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:57:36.898 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:36.898 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:36.898 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:36.908 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:57:36.908 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:36.908 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:57:36.908 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:36.908 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:57:36.908 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:57:36.918 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:57:36.918 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:57:36.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28938 150\n [Camera]
17-03-17 21:57:36.928 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:36.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:37.118 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:37.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:37.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:37.558 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:37.558 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:37.558 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:57:37.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:37.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:37.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:37.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:37.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1459256440, 0x0, 418435064) start.
17-03-17 21:57:37.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28938 827
17-03-17 21:57:37.898 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:37.948 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:57:37.948 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:57:37.948 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:37.948 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1459256440, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:57:37.948 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:57:37.948 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:37.948 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:37.948 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:57:37.948 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:37.958 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:57:38.118 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:38.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:38.118 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:38.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:38.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:38.118 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:38.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:57:38.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:38.118 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:38.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:57:38.308 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 21:57:38.308 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:38.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28938 150' command took 2 ms to send, 1387 ms to get response, and 1393 ms overall
17-03-17 21:57:38.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:38.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131668510653485. ------
17-03-17 21:57:38.438 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13799 mm
17-03-17 21:57:38.438 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:38.438 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:38.438 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:57:38.438 -07 000000486 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:57:38.438 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30143, sync = True, waitForSettling = False)
17-03-17 21:57:38.438 -07 000000627 INF: Z Motor: Moving to -0.137986 mm, started at -0.131669 mm, distance = -6.32 um
17-03-17 21:57:38.438 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:38.448 -07 000000627 INF: FPGA: Xmit ZDACW 30143\n [Z Motor]
17-03-17 21:57:38.448 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:38.448 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:57:38.458 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:38.458 -07 000000627 INF: FPGA: 'ZDACW 30143' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:57:38.458 -07 000000458 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:57:38.468 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:38.468 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:57:38.468 -07 000000486 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:38.468 -07 000000486 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:38.468 -07 000000486 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:57:38.478 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:38.478 -07 000000415 INF: FPGA: Recv ZDACR 30143
17-03-17 21:57:38.488 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:38.488 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:38.488 -07 000000627 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:57:38.518 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:57:38.518 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:57:38.518 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:38.518 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:57:38.518 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:57:38.518 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:38.518 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:38.518 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:57:38.528 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:38.528 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:57:38.668 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:38.668 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 21:57:38.858 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:57:38.858 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:57:38.898 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:38.908 -07 000000458 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:57:38.908 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:38.908 -07 000000486 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:38.908 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:57:38.908 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 21:57:39.428 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.011254,
17-03-17 21:57:39.858 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:39.858 -07 000000424 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:57:39.868 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:39.868 -07 000000486 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:39.888 -07 000000486 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:39.888 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:57:39.888 -07 000000486 INF: Y Motor: Moved to 66.5396 after 1449 ms (table move)
17-03-17 21:57:39.888 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137986 mm (DAC = 30143)
17-03-17 21:57:39.888 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.898 -07 000000486 INF: FPGA: Recv ZSGSRD 30780
17-03-17 21:57:39.898 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:57:39.898 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.898 -07 000000475 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:57:39.908 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:57:39.908 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.908 -07 000000458 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:57:39.918 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.918 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.918 -07 000000458 INF: FPGA: Recv ZSGSRD 30772
17-03-17 21:57:39.928 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.928 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.928 -07 000000415 INF: FPGA: Recv ZSGSRD 30770
17-03-17 21:57:39.938 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.938 -07 000000475 INF: FPGA: Recv ZSGSRD 30767
17-03-17 21:57:39.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30772
17-03-17 21:57:39.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.958 -07 000000433 INF: FPGA: Recv ZSGSRD 30765
17-03-17 21:57:39.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.968 -07 000000415 INF: FPGA: Recv ZSGSRD 30773
17-03-17 21:57:39.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:39.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30771
17-03-17 21:57:39.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.988 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:39.988 -07 000000627 INF: FPGA: Recv ZPIEZORD 26826
17-03-17 21:57:39.998 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:39.998 -07 000000502 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -8.7 V.
17-03-17 21:57:39.998 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30772 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30772 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30765 (-137.2 uncal um), Max = 30780 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:57:39.998 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30772, posNoise = 8, negNoise = 7
17-03-17 21:57:39.998 -07 000000502 INF: Z Motor: After move to -0.137986, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:39.998 -07 000000502 INF: Z Motor: Settle wait time = 1452 ms, measure time = 101 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:57:39.998 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:40.048 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:57:40.048 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:40.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:40.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:40.058 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:40.058 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:40.058 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:40.058 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:40.058 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:40.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:40.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:57:40.058 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:40.068 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:57:40.068 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:57:40.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:40.118 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:40.318 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:40.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:40.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:40.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:57:40.358 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:40.358 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:40.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:57:40.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:57:40.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:40.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:40.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:57:40.458 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:40.458 -07 000000576 INF: Autofocus start
17-03-17 21:57:40.458 -07 000000576 INF: MeasureProfile start
17-03-17 21:57:40.458 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:40.468 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:40.468 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:40.468 -07 000000576 INF: MeasureProfile done
17-03-17 21:57:40.468 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:57:40.468 -07 000000576 INF: Autofocus finished
17-03-17 21:57:40.668 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:40.668 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 21:57:40.678 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.138009208037403. ----------
17-03-17 21:57:40.678 -07 000000610 INF: Cycle	57	Tile	9	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:40.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28667, sync = True, waitForSettling = True)
17-03-17 21:57:40.678 -07 000000610 INF: Z Motor: Moving to -0.131229 mm, started at -0.138009 mm, distance = 6.78 um
17-03-17 21:57:40.678 -07 000000610 INF: FPGA: Xmit ZDACW 28667\n [Z Motor]
17-03-17 21:57:40.678 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:57:40.688 -07 000000610 INF: FPGA: 'ZDACW 28667' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:40.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:40.688 -07 000000475 INF: FPGA: Recv ZDACR 28667
17-03-17 21:57:40.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:40.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.848 -07 000000415 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:57:40.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:40.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.858 -07 000000415 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:57:40.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.868 -07 000000415 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:57:40.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.878 -07 000000475 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:57:40.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.888 -07 000000476 INF: FPGA: Recv ZSGSRD 29722
17-03-17 21:57:40.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.898 -07 000000475 INF: FPGA: Recv ZSGSRD 29714
17-03-17 21:57:40.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.908 -07 000000476 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:57:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.918 -07 000000486 INF: FPGA: Recv ZSGSRD 29721
17-03-17 21:57:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:57:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:40.938 -07 000000475 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:57:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:40.948 -07 000000476 INF: FPGA: Recv ZPIEZORD 25444
17-03-17 21:57:40.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:40.958 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.4 V.
17-03-17 21:57:40.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29718 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29713 (-130.4 uncal um), Max = 29722 (-130.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:40.958 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29718, posNoise = 4, negNoise = 5
17-03-17 21:57:40.958 -07 000000610 INF: Z Motor: After move to -0.131229, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:40.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:57:40.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:40.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:40.958 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:40.958 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:40.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:40.958 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:40.958 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:40.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:40.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:40.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:40.958 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:40.958 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:40.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:57:40.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:40.968 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:40.968 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:40.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:57:40.968 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:57:40.978 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:57:40.978 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:57:40.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28844 150\n [Camera]
17-03-17 21:57:41.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:41.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:41.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:41.618 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:41.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:41.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:41.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:41.628 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:41.628 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:57:41.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:41.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:57:41.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28844 829
17-03-17 21:57:41.928 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:41.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:41.958 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:41.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:57:41.998 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:57:41.998 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:42.008 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:42.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:57:42.008 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:57:42.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:42.008 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:57:42.008 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:42.018 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:57:42.178 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:42.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:42.178 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:42.178 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:42.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:42.178 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:42.288 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:42.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:57:42.288 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:42.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:57:42.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:42.368 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:42.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28844 150' command took 2 ms to send, 1385 ms to get response, and 1392 ms overall
17-03-17 21:57:42.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:42.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131238088439987. ------
17-03-17 21:57:42.378 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:42.378 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13798 mm
17-03-17 21:57:42.378 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:42.378 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:42.378 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:57:42.378 -07 000000431 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 21:57:42.378 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30141, sync = True, waitForSettling = False)
17-03-17 21:57:42.378 -07 000000475 INF: Z Motor: Moving to -0.137977 mm, started at -0.131238 mm, distance = -6.74 um
17-03-17 21:57:42.388 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:42.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:42.388 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:57:42.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:57:42.398 -07 000000431 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:42.398 -07 000000431 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:42.398 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:57:42.398 -07 000000475 INF: FPGA: Xmit ZDACW 30141\n [Z Motor]
17-03-17 21:57:42.398 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:57:42.408 -07 000000475 INF: FPGA: 'ZDACW 30141' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:57:42.408 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:42.418 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:42.428 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:42.428 -07 000000012 INF: FPGA: Recv ZDACR 30141
17-03-17 21:57:42.438 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:57:42.438 -07 000000475 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 21:57:42.608 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:42.608 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:57:42.688 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:57:42.688 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:57:42.688 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:42.688 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:57:42.688 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:57:42.688 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:42.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:42.688 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:42.688 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 21:57:42.698 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 21:57:42.788 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:57:42.788 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:57:42.828 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:42.828 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:57:42.838 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:57:42.838 -07 000000431 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:42.838 -07 000000431 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:57:42.838 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 21:57:43.788 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:43.788 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:57:43.798 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:43.798 -07 000000431 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:43.818 -07 000000431 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:43.818 -07 000000431 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:57:43.818 -07 000000431 INF: Y Motor: Moved to 67.3726 after 1440 ms (table move)
17-03-17 21:57:43.818 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137977 mm (DAC = 30141)
17-03-17 21:57:43.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.828 -07 000000569 INF: FPGA: Recv ZSGSRD 30773
17-03-17 21:57:43.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:57:43.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.828 -07 000000012 INF: FPGA: Recv ZSGSRD 30768
17-03-17 21:57:43.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.838 -07 000000431 INF: FPGA: Recv ZSGSRD 30765
17-03-17 21:57:43.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.848 -07 000000459 INF: FPGA: Recv ZSGSRD 30765
17-03-17 21:57:43.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.858 -07 000000486 INF: FPGA: Recv ZSGSRD 30771
17-03-17 21:57:43.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.868 -07 000000476 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:57:43.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.878 -07 000000012 INF: FPGA: Recv ZSGSRD 30771
17-03-17 21:57:43.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.888 -07 000000569 INF: FPGA: Recv ZSGSRD 30764
17-03-17 21:57:43.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30766
17-03-17 21:57:43.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:43.908 -07 000000569 INF: FPGA: Recv ZSGSRD 30770
17-03-17 21:57:43.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.918 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:43.918 -07 000000012 INF: FPGA: Recv ZPIEZORD 26838
17-03-17 21:57:43.928 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:43.928 -07 000000382 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -8.7 V.
17-03-17 21:57:43.928 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30769 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30769 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30764 (-137.2 uncal um), Max = 30774 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:57:43.928 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30769, posNoise = 5, negNoise = 5
17-03-17 21:57:43.928 -07 000000382 INF: Z Motor: After move to -0.137977, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:43.928 -07 000000382 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:57:43.928 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:43.978 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:57:43.978 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:43.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:43.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:43.978 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:43.978 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:43.978 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:43.978 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:43.978 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:43.978 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:43.988 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:43.988 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:43.998 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:57:43.998 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:57:43.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:44.048 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:44.248 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:44.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:44.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:44.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 21:57:44.288 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:44.288 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:44.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:57:44.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:57:44.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:44.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:57:44.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:57:44.388 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:45.358 -07 000000433 INF: Autofocus start
17-03-17 21:57:45.358 -07 000000433 INF: MeasureProfile start
17-03-17 21:57:45.388 -07 000000433 INF: MeasureProfile done
17-03-17 21:57:45.388 -07 000000433 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:57:45.388 -07 000000433 INF: Autofocus finished
17-03-17 21:57:45.388 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:45.388 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 999 ms to get response, and 1006 ms overall
17-03-17 21:57:45.398 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:45.598 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:45.598 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:45.598 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137989935400978. ----------
17-03-17 21:57:45.598 -07 000000610 INF: Cycle	57	Tile	10	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:45.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28665, sync = True, waitForSettling = True)
17-03-17 21:57:45.608 -07 000000610 INF: Z Motor: Moving to -0.131220 mm, started at -0.137990 mm, distance = 6.77 um
17-03-17 21:57:45.608 -07 000000610 INF: FPGA: Xmit ZDACW 28665\n [Z Motor]
17-03-17 21:57:45.608 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:57:45.618 -07 000000610 INF: FPGA: 'ZDACW 28665' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:45.618 -07 000000476 INF: FPGA: Recv ZDACR 28665
17-03-17 21:57:45.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:45.708 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.997626,
17-03-17 21:57:45.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.778 -07 000000433 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:57:45.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.788 -07 000000433 INF: FPGA: Recv ZSGSRD 29712
17-03-17 21:57:45.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:57:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.808 -07 000000433 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:57:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.818 -07 000000433 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:57:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.828 -07 000000433 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:57:45.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.838 -07 000000433 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:57:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.848 -07 000000433 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:57:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.858 -07 000000433 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:57:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:45.868 -07 000000433 INF: FPGA: Recv ZSGSRD 29714
17-03-17 21:57:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:45.878 -07 000000433 INF: FPGA: Recv ZPIEZORD 25462
17-03-17 21:57:45.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:45.888 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.3 V.
17-03-17 21:57:45.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29716 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29716 (-130.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29712 (-130.4 uncal um), Max = 29719 (-130.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:57:45.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29716, posNoise = 3, negNoise = 4
17-03-17 21:57:45.888 -07 000000610 INF: Z Motor: After move to -0.131220, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:45.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:57:45.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:45.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:45.888 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:45.888 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:45.888 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:45.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:45.888 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:45.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:45.888 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:57:45.888 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:45.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:45.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:45.898 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:45.898 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:45.898 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:45.898 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:45.908 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:57:45.908 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:57:45.908 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:57:45.908 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:57:45.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28842 150\n [Camera]
17-03-17 21:57:46.108 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:46.548 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:46.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:46.548 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:46.558 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:46.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:46.558 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:46.558 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:46.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:57:46.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:46.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:57:46.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28842 827
17-03-17 21:57:46.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:46.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:46.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:46.948 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:57:46.948 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:57:46.948 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:46.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:57:46.958 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:57:46.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:46.958 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:46.958 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:57:46.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:46.968 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:57:47.108 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:47.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:47.108 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:47.108 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:47.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:47.118 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:47.118 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:47.118 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:57:47.118 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:47.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 21:57:47.298 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:47.298 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:47.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28842 150' command took 2 ms to send, 1386 ms to get response, and 1389 ms overall
17-03-17 21:57:47.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:47.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131225240015704. ------
17-03-17 21:57:47.308 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:47.308 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13775 mm
17-03-17 21:57:47.308 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:47.308 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:57:47.308 -07 000000547 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 21:57:47.308 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30091, sync = True, waitForSettling = False)
17-03-17 21:57:47.308 -07 000000431 INF: Z Motor: Moving to -0.137748 mm, started at -0.131225 mm, distance = -6.52 um
17-03-17 21:57:47.318 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:47.328 -07 000000431 INF: FPGA: Xmit ZDACW 30091\n [Z Motor]
17-03-17 21:57:47.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:57:47.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:57:47.508 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:47.508 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:57:47.508 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:57:47.508 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:47.518 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:47.518 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:57:47.518 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:57:47.518 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:57:47.528 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:47.528 -07 000000627 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:57:47.528 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:57:47.528 -07 000000431 INF: FPGA: 'ZDACW 30091' command took 0 ms to send, 194 ms to get response, and 218 ms overall
17-03-17 21:57:47.528 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:47.528 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 222 ms overall
17-03-17 21:57:47.528 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 219 ms overall
17-03-17 21:57:47.528 -07 000000547 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:47.528 -07 000000547 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:47.528 -07 000000547 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:57:47.528 -07 000000627 INF: FPGA: Recv ZDACR 30091
17-03-17 21:57:47.538 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:57:47.538 -07 000000431 INF: Z Motor: MoveAbsStepped took 224 ms (did NOT wait for settling yet))
17-03-17 21:57:47.538 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:47.548 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:47.748 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:47.748 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 217 ms overall
17-03-17 21:57:47.908 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 21:57:47.908 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-17 21:57:47.948 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:48.548 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:57:48.548 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 590 ms to get response, and 593 ms overall
17-03-17 21:57:48.548 -07 000000547 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:48.548 -07 000000547 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:57:48.548 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.193 mm/sec
17-03-17 21:57:49.498 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:49.498 -07 000000502 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:57:49.508 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:49.508 -07 000000547 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:49.528 -07 000000547 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:49.528 -07 000000547 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:57:49.528 -07 000000547 INF: Y Motor: Moved to 68.2056 after 2219 ms (table move)
17-03-17 21:57:49.528 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137748 mm (DAC = 30091)
17-03-17 21:57:49.528 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30731
17-03-17 21:57:49.538 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:57:49.538 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30734
17-03-17 21:57:49.548 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.548 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.548 -07 000000547 INF: FPGA: Recv ZSGSRD 30732
17-03-17 21:57:49.558 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30733
17-03-17 21:57:49.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30734
17-03-17 21:57:49.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.578 -07 000000502 INF: FPGA: Recv ZSGSRD 30733
17-03-17 21:57:49.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.588 -07 000000547 INF: FPGA: Recv ZSGSRD 30737
17-03-17 21:57:49.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.598 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.598 -07 000000502 INF: FPGA: Recv ZSGSRD 30734
17-03-17 21:57:49.608 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.608 -07 000000547 INF: FPGA: Recv ZSGSRD 30734
17-03-17 21:57:49.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.618 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:49.618 -07 000000547 INF: FPGA: Recv ZSGSRD 30731
17-03-17 21:57:49.628 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.628 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:49.628 -07 000000547 INF: FPGA: Recv ZPIEZORD 26805
17-03-17 21:57:49.638 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:49.638 -07 000000569 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -8.7 V.
17-03-17 21:57:49.638 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30733 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30734 (-137.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30731 (-136.9 uncal um), Max = 30737 (-137.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:57:49.638 -07 000000569 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30733, posNoise = 4, negNoise = 2
17-03-17 21:57:49.638 -07 000000569 INF: Z Motor: After move to -0.137748, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:49.638 -07 000000569 INF: Z Motor: Settle wait time = 2221 ms, measure time = 103 ms (allowed 150 ms), total time = 2324 ms
17-03-17 21:57:49.638 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:49.688 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2377 ms
17-03-17 21:57:49.688 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:49.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:49.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:49.688 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:49.688 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:49.688 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:49.688 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:49.698 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:49.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:49.698 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:49.698 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:49.708 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:57:49.708 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:57:49.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:49.748 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:49.948 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:49.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:49.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:49.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 21:57:49.988 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:49.988 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:49.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:57:50.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:57:50.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:50.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:57:50.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:57:50.188 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:50.188 -07 000000547 INF: Autofocus start
17-03-17 21:57:50.188 -07 000000547 INF: MeasureProfile start
17-03-17 21:57:50.198 -07 000000547 INF: MeasureProfile done
17-03-17 21:57:50.198 -07 000000547 INF: X=-111  Z correction [um]=-0.5437309
17-03-17 21:57:50.198 -07 000000547 INF: Autofocus finished
17-03-17 21:57:50.198 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:50.198 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 13 ms overall
17-03-17 21:57:50.198 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:50.408 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:50.408 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 21:57:50.408 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137758663763874. ----------
17-03-17 21:57:50.408 -07 000000610 INF: Cycle	57	Tile	11	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:50.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28485, sync = True, waitForSettling = True)
17-03-17 21:57:50.408 -07 000000610 INF: Z Motor: Moving to -0.130396 mm, started at -0.137759 mm, distance = 7.36 um
17-03-17 21:57:50.408 -07 000000610 INF: FPGA: Xmit ZDACW 28485\n [Z Motor]
17-03-17 21:57:50.418 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:57:50.418 -07 000000610 INF: FPGA: 'ZDACW 28485' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:57:50.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:50.418 -07 000000012 INF: FPGA: Recv ZDACR 28485
17-03-17 21:57:50.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:57:50.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:50.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.578 -07 000000012 INF: FPGA: Recv ZSGSRD 29590
17-03-17 21:57:50.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:50.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.588 -07 000000547 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:57:50.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.598 -07 000000382 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:57:50.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29592
17-03-17 21:57:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.618 -07 000000012 INF: FPGA: Recv ZSGSRD 29594
17-03-17 21:57:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29588
17-03-17 21:57:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:57:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.648 -07 000000569 INF: FPGA: Recv ZSGSRD 29585
17-03-17 21:57:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.658 -07 000000382 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:57:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:50.668 -07 000000012 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:57:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:50.678 -07 000000569 INF: FPGA: Recv ZPIEZORD 25274
17-03-17 21:57:50.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:50.688 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.5 V.
17-03-17 21:57:50.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29588 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29588 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29585 (-129.6 uncal um), Max = 29594 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:57:50.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29588, posNoise = 6, negNoise = 3
17-03-17 21:57:50.688 -07 000000610 INF: Z Motor: After move to -0.130396, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:50.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 21:57:50.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:50.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:50.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:50.688 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:50.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:50.688 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:50.688 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:50.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:50.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:50.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:50.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:50.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:50.698 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:57:50.698 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:50.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:50.698 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:50.708 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:57:50.708 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:57:50.708 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:57:50.708 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:57:50.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28662 150\n [Camera]
17-03-17 21:57:50.918 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:51.068 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.020806,
17-03-17 21:57:51.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:57:51.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:57:51.358 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:51.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:57:51.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:57:51.358 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:51.358 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:51.358 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 21:57:51.358 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:51.358 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 21:57:51.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28662 827
17-03-17 21:57:51.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:57:51.758 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:57:51.758 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:57:51.758 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:51.758 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:57:51.758 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:57:51.758 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:51.758 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:51.758 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:57:51.758 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:51.768 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:57:51.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:57:51.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:57:51.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:52.018 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:52.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 21:57:52.418 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:57:52.418 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:57:52.418 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:52.418 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:57:52.418 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 21:57:52.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:57:52.428 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:52.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:57:52.428 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:57:52.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28662 150' command took 2 ms to send, 1709 ms to get response, and 1720 ms overall
17-03-17 21:57:52.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:57:52.438 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:52.438 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:52.438 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:52.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:57:52.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:57:52.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130402940861558. ------
17-03-17 21:57:52.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:57:52.838 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:57:52.838 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:52.848 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:57:52.848 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:57:52.868 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:53.728 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13706 mm
17-03-17 21:57:53.728 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:57:54.728 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:54.728 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1850 ms to get response, and 1863 ms overall
17-03-17 21:57:54.728 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:57:54.728 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 21:57:54.738 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:57:54.748 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:55.728 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29941, sync = True, waitForSettling = False)
17-03-17 21:57:55.728 -07 000000424 INF: Z Motor: Moving to -0.137061 mm, started at -0.130403 mm, distance = -6.66 um
17-03-17 21:57:55.728 -07 000000424 INF: FPGA: Xmit ZDACW 29941\n [Z Motor]
17-03-17 21:57:56.728 -07 000000431 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:57:56.728 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:57:56.728 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:57:56.728 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1970 ms to get response, and 1998 ms overall
17-03-17 21:57:56.728 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:56.728 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:57:56.728 -07 000000576 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:57:56.728 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1980 ms to get response, and 1999 ms overall
17-03-17 21:57:56.728 -07 000000424 INF: FPGA: 'ZDACW 29941' command took 0 ms to send, 990 ms to get response, and 992 ms overall
17-03-17 21:57:56.738 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:57:56.748 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:56.748 -07 000000382 INF: FPGA: Recv ZDACR 29941
17-03-17 21:57:56.758 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:57:56.758 -07 000000424 INF: Z Motor: MoveAbsStepped took 1021 ms (did NOT wait for settling yet))
17-03-17 21:57:56.928 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:57:56.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:57:57.038 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.988112,
17-03-17 21:57:57.118 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:57:57.118 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 389 ms overall
17-03-17 21:57:57.148 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:57.158 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:57:57.168 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:57.168 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:57.168 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:57:57.168 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.146 mm/sec
17-03-17 21:57:58.118 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:57:58.118 -07 000000415 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:57:58.128 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.128 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:57:58.148 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:57:58.148 -07 000000576 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:57:58.148 -07 000000576 INF: Y Motor: Moved to 69.0273 after 3422 ms (table move)
17-03-17 21:57:58.148 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137061 mm (DAC = 29941)
17-03-17 21:57:58.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.158 -07 000000382 INF: FPGA: Recv ZSGSRD 30630
17-03-17 21:57:58.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:57:58.158 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.158 -07 000000627 INF: FPGA: Recv ZSGSRD 30624
17-03-17 21:57:58.168 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:57:58.168 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.168 -07 000000502 INF: FPGA: Recv ZSGSRD 30631
17-03-17 21:57:58.178 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.178 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.178 -07 000000627 INF: FPGA: Recv ZSGSRD 30625
17-03-17 21:57:58.188 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.188 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.188 -07 000000502 INF: FPGA: Recv ZSGSRD 30627
17-03-17 21:57:58.198 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:58.198 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.198 -07 000000415 INF: FPGA: Recv ZSGSRD 30631
17-03-17 21:57:58.208 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.208 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.208 -07 000000424 INF: FPGA: Recv ZSGSRD 30619
17-03-17 21:57:58.218 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.218 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.218 -07 000000415 INF: FPGA: Recv ZSGSRD 30623
17-03-17 21:57:58.228 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.228 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.228 -07 000000424 INF: FPGA: Recv ZSGSRD 30623
17-03-17 21:57:58.238 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.238 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:58.238 -07 000000415 INF: FPGA: Recv ZSGSRD 30623
17-03-17 21:57:58.248 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.248 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:58.248 -07 000000424 INF: FPGA: Recv ZPIEZORD 26727
17-03-17 21:57:58.258 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.258 -07 000000476 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -8.6 V.
17-03-17 21:57:58.258 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30626 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30624 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30619 (-136.2 uncal um), Max = 30631 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:57:58.258 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30626, posNoise = 5, negNoise = 7
17-03-17 21:57:58.258 -07 000000476 INF: Z Motor: After move to -0.137061, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:58.258 -07 000000476 INF: Z Motor: Settle wait time = 2420 ms, measure time = 102 ms (allowed 150 ms), total time = 2522 ms
17-03-17 21:57:58.258 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:57:58.308 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4578 ms
17-03-17 21:57:58.308 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:57:58.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:58.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:58.308 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:58.308 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:58.308 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:57:58.308 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:58.308 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:58.308 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:57:58.318 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:57:58.318 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:57:58.318 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:57:58.318 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:57:58.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:57:58.368 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:57:58.568 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:57:58.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:57:58.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:57:58.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 21:57:58.608 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:57:58.608 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:57:58.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:57:58.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:57:58.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:57:58.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:57:58.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:57:58.708 -07 000000433 INF: Autofocus start
17-03-17 21:57:58.708 -07 000000433 INF: MeasureProfile start
17-03-17 21:57:58.708 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:57:58.708 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:57:58.718 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:58.718 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:57:58.718 -07 000000433 INF: MeasureProfile done
17-03-17 21:57:58.718 -07 000000433 INF: X=9  Z correction [um]=0.01934518
17-03-17 21:57:58.718 -07 000000433 INF: Autofocus finished
17-03-17 21:57:58.918 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:57:58.918 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:57:58.918 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137071273064706. ----------
17-03-17 21:57:58.928 -07 000000610 INF: Cycle	57	Tile	12	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:57:58.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28458, sync = True, waitForSettling = True)
17-03-17 21:57:58.928 -07 000000610 INF: Z Motor: Moving to -0.130272 mm, started at -0.137071 mm, distance = 6.80 um
17-03-17 21:57:58.928 -07 000000610 INF: FPGA: Xmit ZDACW 28458\n [Z Motor]
17-03-17 21:57:58.928 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:57:58.938 -07 000000610 INF: FPGA: 'ZDACW 28458' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:57:58.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:57:58.938 -07 000000382 INF: FPGA: Recv ZDACR 28458
17-03-17 21:57:58.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:58.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:57:59.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29568
17-03-17 21:57:59.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:57:59.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.108 -07 000000502 INF: FPGA: Recv ZSGSRD 29572
17-03-17 21:57:59.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.118 -07 000000424 INF: FPGA: Recv ZSGSRD 29568
17-03-17 21:57:59.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.128 -07 000000433 INF: FPGA: Recv ZSGSRD 29568
17-03-17 21:57:59.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.138 -07 000000424 INF: FPGA: Recv ZSGSRD 29573
17-03-17 21:57:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29573
17-03-17 21:57:59.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.158 -07 000000627 INF: FPGA: Recv ZSGSRD 29566
17-03-17 21:57:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29565
17-03-17 21:57:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.178 -07 000000415 INF: FPGA: Recv ZSGSRD 29565
17-03-17 21:57:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:57:59.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29573
17-03-17 21:57:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:57:59.198 -07 000000627 INF: FPGA: Recv ZPIEZORD 25320
17-03-17 21:57:59.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:57:59.208 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.342 V. Piezo Error = -9.3 V.
17-03-17 21:57:59.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29569 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29568 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29565 (-129.5 uncal um), Max = 29573 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:57:59.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29569, posNoise = 4, negNoise = 4
17-03-17 21:57:59.208 -07 000000610 INF: Z Motor: After move to -0.130272, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:57:59.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:57:59.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:57:59.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:57:59.208 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:57:59.208 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:57:59.208 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:57:59.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:57:59.208 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:57:59.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:57:59.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:57:59.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:57:59.208 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:57:59.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:57:59.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:57:59.218 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:57:59.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:57:59.218 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:57:59.228 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:57:59.228 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:57:59.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:57:59.228 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:57:59.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28635 150\n [Camera]
17-03-17 21:57:59.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:57:59.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 21:57:59.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 21:57:59.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 21:57:59.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 21:57:59.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:57:59.878 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:57:59.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:57:59.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 21:57:59.888 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:57:59.888 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:58:00.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28635 827
17-03-17 21:58:00.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:58:00.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:58:00.278 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:58:00.278 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:00.278 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:58:00.278 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:58:00.278 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:00.288 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:00.288 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:58:00.288 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:00.298 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:58:00.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:00.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:00.428 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:00.538 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:00.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:00.538 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:00.548 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:00.548 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:58:00.548 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:00.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) start.
17-03-17 21:58:00.618 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:58:00.628 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:00.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28635 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 21:58:00.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:00.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130280880830865. ------
17-03-17 21:58:00.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:00.938 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1403846816, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:58:00.938 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:58:00.938 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:00.938 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:00.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:58:00.938 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:58:00.938 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:00.948 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:00.948 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 21:58:00.948 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:58:00.958 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13669 mm
17-03-17 21:58:00.958 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:00.958 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:00.958 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 323 ms to get response, and 328 ms overall
17-03-17 21:58:00.958 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:00.958 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:58:00.958 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 21:58:00.968 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:01.968 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29859, sync = True, waitForSettling = False)
17-03-17 21:58:01.968 -07 000000569 INF: Z Motor: Moving to -0.136686 mm, started at -0.130281 mm, distance = -6.40 um
17-03-17 21:58:01.968 -07 000000569 INF: FPGA: Xmit ZDACW 29859\n [Z Motor]
17-03-17 21:58:02.498 -07 000000486 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:58:02.498 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:02.498 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:02.498 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 21:58:02.498 -07 000000569 INF: FPGA: 'ZDACW 29859' command took 0 ms to send, 521 ms to get response, and 529 ms overall
17-03-17 21:58:02.498 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:02.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:02.498 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1520 ms to get response, and 1534 ms overall
17-03-17 21:58:02.498 -07 000000476 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:02.498 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1530 ms to get response, and 1537 ms overall
17-03-17 21:58:02.498 -07 000000486 INF: FPGA: Recv ZDACR 29859
17-03-17 21:58:02.498 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:02.498 -07 000000476 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:58:02.508 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:02.508 -07 000000569 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 21:58:02.508 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:02.808 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.969015,
17-03-17 21:58:02.878 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:58:02.878 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:58:02.918 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:02.918 -07 000000486 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:58:02.928 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:58:02.928 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:02.928 -07 000000476 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:58:02.928 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.845 mm, average velocity = 2.207 mm/sec
17-03-17 21:58:03.878 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:03.878 -07 000000475 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:58:03.888 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.888 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:03.908 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:03.908 -07 000000476 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:58:03.908 -07 000000476 INF: Y Motor: Moved to 69.8633 after 2947 ms (table move)
17-03-17 21:58:03.908 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136686 mm (DAC = 29859)
17-03-17 21:58:03.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.918 -07 000000458 INF: FPGA: Recv ZSGSRD 30558
17-03-17 21:58:03.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:58:03.918 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30569
17-03-17 21:58:03.928 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:58:03.928 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.928 -07 000000458 INF: FPGA: Recv ZSGSRD 30564
17-03-17 21:58:03.938 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.938 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.938 -07 000000576 INF: FPGA: Recv ZSGSRD 30569
17-03-17 21:58:03.948 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.948 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.948 -07 000000475 INF: FPGA: Recv ZSGSRD 30566
17-03-17 21:58:03.958 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.958 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.958 -07 000000459 INF: FPGA: Recv ZSGSRD 30570
17-03-17 21:58:03.968 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.968 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.968 -07 000000476 INF: FPGA: Recv ZSGSRD 30562
17-03-17 21:58:03.978 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.978 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.978 -07 000000459 INF: FPGA: Recv ZSGSRD 30570
17-03-17 21:58:03.988 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.988 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.988 -07 000000475 INF: FPGA: Recv ZSGSRD 30566
17-03-17 21:58:03.998 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:03.998 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:03.998 -07 000000486 INF: FPGA: Recv ZSGSRD 30568
17-03-17 21:58:04.008 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.008 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:04.008 -07 000000547 INF: FPGA: Recv ZPIEZORD 26621
17-03-17 21:58:04.018 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.018 -07 000000433 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.556 V. Piezo Error = -8.7 V.
17-03-17 21:58:04.018 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30566 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30567 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30558 (-135.8 uncal um), Max = 30570 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:58:04.018 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30566, posNoise = 4, negNoise = 8
17-03-17 21:58:04.018 -07 000000433 INF: Z Motor: After move to -0.136686, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:04.018 -07 000000433 INF: Z Motor: Settle wait time = 1946 ms, measure time = 103 ms (allowed 150 ms), total time = 2049 ms
17-03-17 21:58:04.018 -07 000000433 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:04.068 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3108 ms
17-03-17 21:58:04.068 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:04.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:04.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:04.068 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:04.068 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:04.068 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:04.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:04.078 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:04.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:04.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:04.078 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:04.088 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:58:04.088 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:58:04.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:04.138 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:04.338 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:04.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:04.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:04.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 21:58:04.378 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:04.378 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:04.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:58:04.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:58:04.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:04.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:58:04.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:58:04.478 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:04.478 -07 000000576 INF: Autofocus start
17-03-17 21:58:04.478 -07 000000576 INF: MeasureProfile start
17-03-17 21:58:04.478 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:04.488 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:58:04.488 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:04.488 -07 000000576 INF: MeasureProfile done
17-03-17 21:58:04.488 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:58:04.488 -07 000000576 INF: Autofocus finished
17-03-17 21:58:04.688 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:04.688 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:58:04.688 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.1366858203362. ----------
17-03-17 21:58:04.688 -07 000000610 INF: Cycle	57	Tile	13	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:04.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28383, sync = True, waitForSettling = True)
17-03-17 21:58:04.698 -07 000000610 INF: Z Motor: Moving to -0.129929 mm, started at -0.136686 mm, distance = 6.76 um
17-03-17 21:58:04.698 -07 000000610 INF: FPGA: Xmit ZDACW 28383\n [Z Motor]
17-03-17 21:58:04.698 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:58:04.708 -07 000000610 INF: FPGA: 'ZDACW 28383' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:04.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:04.708 -07 000000576 INF: FPGA: Recv ZDACR 28383
17-03-17 21:58:04.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.868 -07 000000576 INF: FPGA: Recv ZSGSRD 29512
17-03-17 21:58:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.878 -07 000000486 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:58:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.888 -07 000000476 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:58:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.898 -07 000000569 INF: FPGA: Recv ZSGSRD 29509
17-03-17 21:58:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.908 -07 000000576 INF: FPGA: Recv ZSGSRD 29521
17-03-17 21:58:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:04.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.918 -07 000000433 INF: FPGA: Recv ZSGSRD 29507
17-03-17 21:58:04.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.928 -07 000000458 INF: FPGA: Recv ZSGSRD 29516
17-03-17 21:58:04.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.938 -07 000000569 INF: FPGA: Recv ZSGSRD 29516
17-03-17 21:58:04.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.948 -07 000000458 INF: FPGA: Recv ZSGSRD 29508
17-03-17 21:58:04.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:04.958 -07 000000433 INF: FPGA: Recv ZSGSRD 29521
17-03-17 21:58:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:04.968 -07 000000459 INF: FPGA: Recv ZPIEZORD 25233
17-03-17 21:58:04.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:04.978 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.4 V.
17-03-17 21:58:04.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29514 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29516 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29507 (-129.1 uncal um), Max = 29521 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:58:04.978 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29514, posNoise = 7, negNoise = 7
17-03-17 21:58:04.978 -07 000000610 INF: Z Motor: After move to -0.129929, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:04.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:58:04.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:04.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:04.978 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:04.978 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:04.978 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:04.978 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:04.978 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:04.978 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:04.978 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:04.978 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:04.978 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:58:04.978 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:04.988 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:58:04.988 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:04.988 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:58:04.988 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:04.998 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:58:04.998 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:58:04.998 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:58:04.998 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:58:05.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28560 150\n [Camera]
17-03-17 21:58:05.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:05.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:05.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:05.648 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:05.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:05.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:05.648 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:05.648 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:05.648 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:58:05.658 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:05.658 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:58:05.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28560 827
17-03-17 21:58:05.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:58:06.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:58:06.028 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:58:06.028 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:06.028 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:06.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:58:06.028 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:58:06.028 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:06.038 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:06.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:58:06.038 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:58:06.198 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:06.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:06.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:06.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:06.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:06.208 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:06.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:06.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:58:06.208 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:06.208 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:58:06.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:58:06.398 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:06.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28560 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 21:58:06.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:06.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129927549163068. ------
17-03-17 21:58:06.398 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:06.398 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13635 mm
17-03-17 21:58:06.398 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:06.408 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:06.408 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:58:06.408 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:58:06.408 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:58:06.408 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:06.408 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29787, sync = True, waitForSettling = False)
17-03-17 21:58:06.408 -07 000000576 INF: Z Motor: Moving to -0.136356 mm, started at -0.129928 mm, distance = -6.43 um
17-03-17 21:58:06.418 -07 000000576 INF: FPGA: Xmit ZDACW 29787\n [Z Motor]
17-03-17 21:58:06.428 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:06.588 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:58:06.588 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:58:06.588 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:06.588 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:58:06.588 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:58:06.588 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:06.588 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:58:06.588 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:58:06.588 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:06.598 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:58:07.228 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:58:07.228 -07 000000433 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:58:07.228 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:07.228 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:07.228 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 811 ms to get response, and 820 ms overall
17-03-17 21:58:07.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:07.228 -07 000000576 INF: FPGA: 'ZDACW 29787' command took 0 ms to send, 800 ms to get response, and 815 ms overall
17-03-17 21:58:07.228 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 791 ms to get response, and 816 ms overall
17-03-17 21:58:07.228 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:07.228 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:07.228 -07 000000415 INF: FPGA: Recv ZDACR 29787
17-03-17 21:58:07.228 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:07.228 -07 000000476 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:58:07.238 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:58:07.238 -07 000000576 INF: Z Motor: MoveAbsStepped took 824 ms (did NOT wait for settling yet))
17-03-17 21:58:07.238 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:07.608 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:58:07.608 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:58:07.648 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:07.658 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:58:07.658 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:58:07.658 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:07.658 -07 000000476 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:58:07.658 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-17 21:58:08.168 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.989471,
17-03-17 21:58:08.608 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:08.608 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:58:08.618 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:08.618 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:08.638 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:08.638 -07 000000476 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:58:08.638 -07 000000476 INF: Y Motor: Moved to 70.6885 after 2229 ms (table move)
17-03-17 21:58:08.638 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136356 mm (DAC = 29787)
17-03-17 21:58:08.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.648 -07 000000475 INF: FPGA: Recv ZSGSRD 30525
17-03-17 21:58:08.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:58:08.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.648 -07 000000576 INF: FPGA: Recv ZSGSRD 30513
17-03-17 21:58:08.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:08.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.658 -07 000000576 INF: FPGA: Recv ZSGSRD 30515
17-03-17 21:58:08.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30519
17-03-17 21:58:08.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.678 -07 000000475 INF: FPGA: Recv ZSGSRD 30510
17-03-17 21:58:08.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30519
17-03-17 21:58:08.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.698 -07 000000476 INF: FPGA: Recv ZSGSRD 30512
17-03-17 21:58:08.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30510
17-03-17 21:58:08.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30518
17-03-17 21:58:08.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:08.728 -07 000000475 INF: FPGA: Recv ZSGSRD 30519
17-03-17 21:58:08.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.738 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:08.738 -07 000000476 INF: FPGA: Recv ZPIEZORD 26571
17-03-17 21:58:08.748 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:08.748 -07 000000486 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -8.7 V.
17-03-17 21:58:08.748 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30516 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30516 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30510 (-135.5 uncal um), Max = 30525 (-135.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:58:08.748 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30516, posNoise = 9, negNoise = 6
17-03-17 21:58:08.748 -07 000000486 INF: Z Motor: After move to -0.136356, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:08.748 -07 000000486 INF: Z Motor: Settle wait time = 2232 ms, measure time = 102 ms (allowed 150 ms), total time = 2334 ms
17-03-17 21:58:08.748 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:08.798 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2392 ms
17-03-17 21:58:08.798 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:08.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:08.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:08.798 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:08.798 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:08.798 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:08.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:08.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:08.798 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:08.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:08.808 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:08.818 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:58:08.818 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:58:08.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:08.868 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:09.058 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:09.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:09.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:09.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:58:09.098 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:09.108 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:09.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:58:09.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:58:09.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:58:09.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:58:09.208 -07 000000476 INF: Autofocus start
17-03-17 21:58:09.208 -07 000000476 INF: MeasureProfile start
17-03-17 21:58:09.208 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:09.208 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:09.218 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:58:09.218 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:09.218 -07 000000476 INF: MeasureProfile done
17-03-17 21:58:09.218 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:58:09.218 -07 000000476 INF: Autofocus finished
17-03-17 21:58:09.418 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:09.418 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 21:58:09.418 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136364609729112. ----------
17-03-17 21:58:09.428 -07 000000610 INF: Cycle	57	Tile	14	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:09.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28294, sync = True, waitForSettling = True)
17-03-17 21:58:09.428 -07 000000610 INF: Z Motor: Moving to -0.129522 mm, started at -0.136365 mm, distance = 6.84 um
17-03-17 21:58:09.428 -07 000000610 INF: FPGA: Xmit ZDACW 28294\n [Z Motor]
17-03-17 21:58:09.428 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:58:09.438 -07 000000610 INF: FPGA: 'ZDACW 28294' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:09.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:09.438 -07 000000476 INF: FPGA: Recv ZDACR 28294
17-03-17 21:58:09.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.598 -07 000000475 INF: FPGA: Recv ZSGSRD 29451
17-03-17 21:58:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.608 -07 000000433 INF: FPGA: Recv ZSGSRD 29454
17-03-17 21:58:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.618 -07 000000476 INF: FPGA: Recv ZSGSRD 29446
17-03-17 21:58:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.628 -07 000000433 INF: FPGA: Recv ZSGSRD 29451
17-03-17 21:58:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.638 -07 000000475 INF: FPGA: Recv ZSGSRD 29449
17-03-17 21:58:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.648 -07 000000459 INF: FPGA: Recv ZSGSRD 29456
17-03-17 21:58:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.658 -07 000000012 INF: FPGA: Recv ZSGSRD 29448
17-03-17 21:58:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.668 -07 000000576 INF: FPGA: Recv ZSGSRD 29449
17-03-17 21:58:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.678 -07 000000424 INF: FPGA: Recv ZSGSRD 29449
17-03-17 21:58:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:09.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29452
17-03-17 21:58:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:09.698 -07 000000475 INF: FPGA: Recv ZPIEZORD 25135
17-03-17 21:58:09.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:09.708 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.5 V.
17-03-17 21:58:09.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29450 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29446 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:58:09.708 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29450, posNoise = 6, negNoise = 4
17-03-17 21:58:09.708 -07 000000610 INF: Z Motor: After move to -0.129522, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:09.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:58:09.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:09.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:09.708 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:09.708 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:09.708 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:09.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:09.708 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:09.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:09.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:09.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:09.708 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:58:09.708 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:09.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:58:09.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:09.718 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:58:09.718 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:09.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:58:09.728 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:58:09.728 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:58:09.728 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:58:09.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28471 150\n [Camera]
17-03-17 21:58:09.928 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:10.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:10.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:10.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:10.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:10.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:10.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:10.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:58:10.378 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:10.388 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:10.388 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:58:10.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28471 827
17-03-17 21:58:10.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 21:58:10.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:58:10.778 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:58:10.778 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:10.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 498 ms.
17-03-17 21:58:10.888 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 21:58:10.888 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:10.888 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 21:58:10.888 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:58:10.888 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:10.898 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 21:58:10.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:10.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:10.928 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:10.938 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:10.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:10.938 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:10.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:10.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:58:10.938 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:10.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:58:11.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:58:11.118 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:11.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28471 150' command took 2 ms to send, 1379 ms to get response, and 1390 ms overall
17-03-17 21:58:11.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:11.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129516399585995. ------
17-03-17 21:58:11.128 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:11.128 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13574 mm
17-03-17 21:58:11.128 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:11.138 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:11.138 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:11.138 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:11.138 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:58:11.138 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29653, sync = True, waitForSettling = False)
17-03-17 21:58:11.138 -07 000000382 INF: Z Motor: Moving to -0.135743 mm, started at -0.129516 mm, distance = -6.23 um
17-03-17 21:58:11.138 -07 000000486 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 21:58:11.148 -07 000000382 INF: FPGA: Xmit ZDACW 29653\n [Z Motor]
17-03-17 21:58:11.148 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:58:11.158 -07 000000382 INF: FPGA: 'ZDACW 29653' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:58:11.158 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:11.158 -07 000000627 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:58:11.168 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:58:11.168 -07 000000486 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:11.168 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:11.168 -07 000000433 INF: FPGA: Recv ZDACR 29653
17-03-17 21:58:11.168 -07 000000486 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:11.168 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:58:11.178 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:58:11.178 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:58:11.178 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:11.338 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:11.338 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:58:11.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:58:11.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:58:11.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:11.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:58:11.338 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:58:11.338 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:11.348 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:58:11.348 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:58:11.348 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:58:11.348 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:58:11.558 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 21:58:11.558 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 386 ms overall
17-03-17 21:58:11.588 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:11.598 -07 000000476 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:58:11.598 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:58:11.598 -07 000000486 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:11.598 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:58:11.598 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-17 21:58:11.928 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:12.548 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:12.548 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:58:12.558 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.558 -07 000000486 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:12.578 -07 000000486 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:12.578 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:58:12.578 -07 000000486 INF: Y Motor: Moved to 71.5195 after 1440 ms (table move)
17-03-17 21:58:12.578 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135743 mm (DAC = 29653)
17-03-17 21:58:12.578 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.588 -07 000000502 INF: FPGA: Recv ZSGSRD 30419
17-03-17 21:58:12.588 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:58:12.588 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.588 -07 000000576 INF: FPGA: Recv ZSGSRD 30426
17-03-17 21:58:12.598 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:12.598 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.598 -07 000000415 INF: FPGA: Recv ZSGSRD 30420
17-03-17 21:58:12.608 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.608 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.608 -07 000000502 INF: FPGA: Recv ZSGSRD 30413
17-03-17 21:58:12.618 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.618 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30424
17-03-17 21:58:12.628 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.628 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.628 -07 000000502 INF: FPGA: Recv ZSGSRD 30420
17-03-17 21:58:12.638 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.638 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.638 -07 000000502 INF: FPGA: Recv ZSGSRD 30421
17-03-17 21:58:12.648 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.648 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.648 -07 000000502 INF: FPGA: Recv ZSGSRD 30424
17-03-17 21:58:12.658 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.658 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.658 -07 000000502 INF: FPGA: Recv ZSGSRD 30425
17-03-17 21:58:12.668 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.668 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:12.668 -07 000000459 INF: FPGA: Recv ZSGSRD 30421
17-03-17 21:58:12.678 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.678 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:12.678 -07 000000415 INF: FPGA: Recv ZPIEZORD 26465
17-03-17 21:58:12.688 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:12.688 -07 000000012 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -8.7 V.
17-03-17 21:58:12.688 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30421 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30421 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30413 (-134.9 uncal um), Max = 30426 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:58:12.688 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30421, posNoise = 5, negNoise = 8
17-03-17 21:58:12.688 -07 000000012 INF: Z Motor: After move to -0.135743, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:12.688 -07 000000012 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:58:12.688 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:12.738 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:58:12.738 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:12.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:12.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:12.738 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:12.738 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:12.738 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:12.738 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:12.738 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:58:12.738 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:12.748 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:12.748 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:12.748 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:58:12.748 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:58:12.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:12.798 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:12.998 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:12.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:12.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:12.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 21:58:13.038 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:13.038 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:13.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 21:58:13.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:58:13.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:13.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:58:13.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 21:58:13.138 -07 000000459 INF: Autofocus start
17-03-17 21:58:13.138 -07 000000459 INF: MeasureProfile start
17-03-17 21:58:13.138 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:13.138 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:13.148 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:58:13.148 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:13.148 -07 000000459 INF: MeasureProfile done
17-03-17 21:58:13.148 -07 000000459 INF: X=117  Z correction [um]=0.5388671
17-03-17 21:58:13.148 -07 000000459 INF: Autofocus finished
17-03-17 21:58:13.348 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:13.348 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:58:13.358 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135754309575645. ----------
17-03-17 21:58:13.358 -07 000000610 INF: Cycle	57	Tile	15	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:13.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28284, sync = True, waitForSettling = True)
17-03-17 21:58:13.358 -07 000000610 INF: Z Motor: Moving to -0.129476 mm, started at -0.135754 mm, distance = 6.28 um
17-03-17 21:58:13.358 -07 000000610 INF: FPGA: Xmit ZDACW 28284\n [Z Motor]
17-03-17 21:58:13.368 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:58:13.368 -07 000000610 INF: FPGA: 'ZDACW 28284' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:58:13.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:13.368 -07 000000486 INF: FPGA: Recv ZDACR 28284
17-03-17 21:58:13.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:58:13.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:13.538 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.975845,
17-03-17 21:58:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29445
17-03-17 21:58:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:58:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.568 -07 000000502 INF: FPGA: Recv ZSGSRD 29449
17-03-17 21:58:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:58:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.598 -07 000000415 INF: FPGA: Recv ZSGSRD 29447
17-03-17 21:58:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:58:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.618 -07 000000486 INF: FPGA: Recv ZSGSRD 29440
17-03-17 21:58:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:58:13.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29442
17-03-17 21:58:13.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29439
17-03-17 21:58:13.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.648 -07 000000424 INF: FPGA: Recv ZSGSRD 29448
17-03-17 21:58:13.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.658 -07 000000415 INF: FPGA: Recv ZSGSRD 29446
17-03-17 21:58:13.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.668 -07 000000424 INF: FPGA: Recv ZSGSRD 29438
17-03-17 21:58:13.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:13.678 -07 000000012 INF: FPGA: Recv ZSGSRD 29446
17-03-17 21:58:13.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:13.688 -07 000000459 INF: FPGA: Recv ZPIEZORD 25198
17-03-17 21:58:13.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:13.698 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.3 V.
17-03-17 21:58:13.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29444 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29446 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29438 (-128.7 uncal um), Max = 29449 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:58:13.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29444, posNoise = 5, negNoise = 6
17-03-17 21:58:13.698 -07 000000610 INF: Z Motor: After move to -0.129476, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:13.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 333 ms)
17-03-17 21:58:13.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:13.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:13.698 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:13.698 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:13.698 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:13.698 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:13.698 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:13.698 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:13.698 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:58:13.698 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:13.698 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:58:13.698 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:13.698 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:58:13.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:13.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:13.708 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:13.708 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:58:13.708 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:58:13.708 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:58:13.708 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:58:13.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28460 150\n [Camera]
17-03-17 21:58:13.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:14.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:14.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:14.358 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:14.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:14.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:14.358 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:14.358 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:14.358 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:58:14.368 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:14.368 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:58:14.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28460 827
17-03-17 21:58:14.698 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:58:14.758 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:58:14.758 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:58:14.758 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:14.758 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:58:14.758 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:58:14.758 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:14.758 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:14.768 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:58:14.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:14.768 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:58:14.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:14.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:14.918 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:14.918 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:14.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:14.918 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:14.918 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:14.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:58:14.918 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:14.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 21:58:15.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:58:15.108 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:15.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28460 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-17 21:58:15.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:15.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129477854313145. ------
17-03-17 21:58:15.108 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13575 mm
17-03-17 21:58:15.108 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:15.108 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:15.118 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:58:15.118 -07 000000458 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 21:58:15.118 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:15.118 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:58:15.118 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:15.118 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29654, sync = True, waitForSettling = False)
17-03-17 21:58:15.118 -07 000000547 INF: Z Motor: Moving to -0.135747 mm, started at -0.129478 mm, distance = -6.27 um
17-03-17 21:58:15.118 -07 000000415 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:58:15.128 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:58:15.128 -07 000000458 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:15.128 -07 000000458 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:15.128 -07 000000458 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:58:15.128 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:15.138 -07 000000547 INF: FPGA: Xmit ZDACW 29654\n [Z Motor]
17-03-17 21:58:15.138 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:58:15.148 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:15.148 -07 000000547 INF: FPGA: 'ZDACW 29654' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:58:15.158 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:15.158 -07 000000569 INF: FPGA: Recv ZDACR 29654
17-03-17 21:58:15.168 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:58:15.168 -07 000000547 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:58:15.308 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:58:15.308 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:58:15.308 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:15.308 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:58:15.308 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:58:15.308 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:15.308 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:15.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:15.318 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:58:15.318 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:58:15.328 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:15.328 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 21:58:15.518 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 21:58:15.518 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:58:15.558 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:15.558 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:58:15.568 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:58:15.568 -07 000000458 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:15.568 -07 000000458 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:58:15.568 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 21:58:16.518 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:16.518 -07 000000431 INF: FPGA: Recv YRDPOS 148173
17-03-17 21:58:16.528 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.528 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:16.548 -07 000000458 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:16.548 -07 000000458 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:58:16.548 -07 000000458 INF: Y Motor: Moved to 72.3501 after 1431 ms (table move)
17-03-17 21:58:16.548 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135747 mm (DAC = 29654)
17-03-17 21:58:16.548 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30428
17-03-17 21:58:16.558 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:58:16.558 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.558 -07 000000012 INF: FPGA: Recv ZSGSRD 30429
17-03-17 21:58:16.568 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:16.568 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30420
17-03-17 21:58:16.578 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.578 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.578 -07 000000012 INF: FPGA: Recv ZSGSRD 30420
17-03-17 21:58:16.588 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.588 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.588 -07 000000012 INF: FPGA: Recv ZSGSRD 30426
17-03-17 21:58:16.598 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.598 -07 000000012 INF: FPGA: Recv ZSGSRD 30424
17-03-17 21:58:16.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.608 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.608 -07 000000458 INF: FPGA: Recv ZSGSRD 30421
17-03-17 21:58:16.618 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.618 -07 000000458 INF: FPGA: Recv ZSGSRD 30415
17-03-17 21:58:16.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.628 -07 000000458 INF: FPGA: Recv ZSGSRD 30420
17-03-17 21:58:16.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:16.638 -07 000000012 INF: FPGA: Recv ZSGSRD 30428
17-03-17 21:58:16.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.648 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:16.648 -07 000000012 INF: FPGA: Recv ZPIEZORD 26442
17-03-17 21:58:16.658 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:16.658 -07 000000424 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.525 V. Piezo Error = -8.8 V.
17-03-17 21:58:16.658 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30423 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30422 (-135.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30415 (-134.9 uncal um), Max = 30429 (-135.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:58:16.658 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30423, posNoise = 6, negNoise = 8
17-03-17 21:58:16.658 -07 000000424 INF: Z Motor: After move to -0.135747, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:16.658 -07 000000424 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:58:16.658 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:16.708 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:58:16.708 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:16.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:16.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:16.708 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:16.708 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:16.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:16.708 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:16.708 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:16.708 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:16.718 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:16.718 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:16.728 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:58:16.728 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:58:16.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:16.778 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:16.928 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:16.978 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:16.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:16.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:16.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 21:58:17.018 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:17.018 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:17.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:58:17.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:58:17.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:17.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:58:17.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:58:17.118 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:17.118 -07 000000458 INF: Autofocus start
17-03-17 21:58:17.118 -07 000000458 INF: MeasureProfile start
17-03-17 21:58:17.118 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:17.128 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:17.128 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:17.128 -07 000000458 INF: MeasureProfile done
17-03-17 21:58:17.128 -07 000000458 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:58:17.128 -07 000000458 INF: Autofocus finished
17-03-17 21:58:17.328 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:17.328 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:58:17.328 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135767157999929. ----------
17-03-17 21:58:17.328 -07 000000610 INF: Cycle	57	Tile	16	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:17.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28161, sync = True, waitForSettling = True)
17-03-17 21:58:17.338 -07 000000610 INF: Z Motor: Moving to -0.128913 mm, started at -0.135767 mm, distance = 6.85 um
17-03-17 21:58:17.338 -07 000000610 INF: FPGA: Xmit ZDACW 28161\n [Z Motor]
17-03-17 21:58:17.338 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:58:17.348 -07 000000610 INF: FPGA: 'ZDACW 28161' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:58:17.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:17.348 -07 000000458 INF: FPGA: Recv ZDACR 28161
17-03-17 21:58:17.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29359
17-03-17 21:58:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.518 -07 000000486 INF: FPGA: Recv ZSGSRD 29352
17-03-17 21:58:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.528 -07 000000486 INF: FPGA: Recv ZSGSRD 29360
17-03-17 21:58:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.538 -07 000000458 INF: FPGA: Recv ZSGSRD 29354
17-03-17 21:58:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.548 -07 000000476 INF: FPGA: Recv ZSGSRD 29351
17-03-17 21:58:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.558 -07 000000476 INF: FPGA: Recv ZSGSRD 29361
17-03-17 21:58:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.568 -07 000000476 INF: FPGA: Recv ZSGSRD 29351
17-03-17 21:58:17.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.578 -07 000000476 INF: FPGA: Recv ZSGSRD 29359
17-03-17 21:58:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29358
17-03-17 21:58:17.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:17.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29357
17-03-17 21:58:17.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:17.608 -07 000000458 INF: FPGA: Recv ZPIEZORD 25082
17-03-17 21:58:17.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:17.618 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.4 V.
17-03-17 21:58:17.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29356 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29358 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29351 (-128.1 uncal um), Max = 29361 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:58:17.618 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29356, posNoise = 5, negNoise = 5
17-03-17 21:58:17.618 -07 000000610 INF: Z Motor: After move to -0.128913, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:17.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:58:17.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:17.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:17.618 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:17.618 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:17.618 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:17.618 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:17.618 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:17.618 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:17.618 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:17.618 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:17.618 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:58:17.618 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:17.628 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:58:17.628 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:17.628 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:58:17.628 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:17.638 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:58:17.638 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:58:17.638 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:58:17.638 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:58:17.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28338 150\n [Camera]
17-03-17 21:58:17.838 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:18.278 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:18.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:18.278 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:18.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:18.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:18.288 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:18.288 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:18.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) start.
17-03-17 21:58:18.288 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:18.288 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:58:18.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28338 827
17-03-17 21:58:18.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 21:58:18.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:58:18.658 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:58:18.658 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:18.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:58:18.658 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:58:18.658 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:18.668 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:58:18.668 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:58:18.668 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:58:18.678 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:58:18.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:18.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:18.838 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:18.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:18.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:18.838 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:18.838 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1459256440, 0x0, 391868352) start.
17-03-17 21:58:18.838 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:18.838 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:18.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:58:18.938 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 3.996267,
17-03-17 21:58:19.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:58:19.028 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:19.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28338 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-17 21:58:19.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:19.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.12891252364467. ------
17-03-17 21:58:19.038 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:19.038 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13551 mm
17-03-17 21:58:19.038 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:19.038 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:19.038 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:58:19.038 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 21:58:19.038 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29601, sync = True, waitForSettling = False)
17-03-17 21:58:19.038 -07 000000475 INF: Z Motor: Moving to -0.135505 mm, started at -0.128913 mm, distance = -6.59 um
17-03-17 21:58:19.048 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:19.048 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:19.048 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 21:58:19.058 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:58:19.058 -07 000000475 INF: FPGA: Xmit ZDACW 29601\n [Z Motor]
17-03-17 21:58:19.058 -07 000000547 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:19.058 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:19.058 -07 000000547 INF: Y Motor: Moving 1348 steps-27
17-03-17 21:58:19.058 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:58:19.068 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:19.068 -07 000000475 INF: FPGA: 'ZDACW 29601' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:58:19.078 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:19.088 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:19.088 -07 000000576 INF: FPGA: Recv ZDACR 29601
17-03-17 21:58:19.098 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:58:19.098 -07 000000475 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 21:58:19.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:58:19.238 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:58:19.238 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:19.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1459256440, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:58:19.238 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:58:19.238 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:19.238 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:19.238 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:19.238 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:58:19.248 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:58:19.268 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:19.268 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:58:19.448 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:58:19.448 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:58:19.488 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:19.498 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:58:19.498 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:58:19.498 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:19.498 -07 000000547 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:58:19.498 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 21:58:20.448 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:20.448 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:58:20.458 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.458 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:20.478 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:20.478 -07 000000547 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:58:20.478 -07 000000547 INF: Y Motor: Moved to 73.1763 after 1439 ms (table move)
17-03-17 21:58:20.478 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135505 mm (DAC = 29601)
17-03-17 21:58:20.478 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.488 -07 000000475 INF: FPGA: Recv ZSGSRD 30389
17-03-17 21:58:20.488 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:58:20.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.488 -07 000000486 INF: FPGA: Recv ZSGSRD 30384
17-03-17 21:58:20.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:20.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30382
17-03-17 21:58:20.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.508 -07 000000627 INF: FPGA: Recv ZSGSRD 30382
17-03-17 21:58:20.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.518 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30388
17-03-17 21:58:20.528 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.528 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.528 -07 000000382 INF: FPGA: Recv ZSGSRD 30388
17-03-17 21:58:20.538 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.538 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.538 -07 000000475 INF: FPGA: Recv ZSGSRD 30383
17-03-17 21:58:20.548 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.548 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.548 -07 000000382 INF: FPGA: Recv ZSGSRD 30383
17-03-17 21:58:20.558 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.558 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.558 -07 000000475 INF: FPGA: Recv ZSGSRD 30376
17-03-17 21:58:20.568 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.568 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:20.568 -07 000000576 INF: FPGA: Recv ZSGSRD 30381
17-03-17 21:58:20.578 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.578 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:20.578 -07 000000475 INF: FPGA: Recv ZPIEZORD 26435
17-03-17 21:58:20.588 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:20.588 -07 000000424 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -8.7 V.
17-03-17 21:58:20.588 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30384 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30383 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30376 (-134.7 uncal um), Max = 30389 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:58:20.588 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30384, posNoise = 5, negNoise = 8
17-03-17 21:58:20.588 -07 000000424 INF: Z Motor: After move to -0.135505, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:20.588 -07 000000424 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:58:20.588 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:20.638 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 21:58:20.638 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:20.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:20.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:20.638 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:20.638 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:20.638 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:20.638 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:20.638 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:58:20.638 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:20.648 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:20.648 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:20.658 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:58:20.658 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:58:20.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:20.698 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:20.898 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:20.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:20.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:20.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1167800648, 0x0, 559484976) start.
17-03-17 21:58:20.938 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:20.938 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:20.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:58:21.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1167800648, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:58:21.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:21.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:58:21.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:58:21.138 -07 000000415 INF: Autofocus start
17-03-17 21:58:21.138 -07 000000415 INF: MeasureProfile start
17-03-17 21:58:21.138 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:21.138 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:21.148 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:21.148 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:21.148 -07 000000415 INF: MeasureProfile done
17-03-17 21:58:21.148 -07 000000415 INF: X=3  Z correction [um]=-0.009517147
17-03-17 21:58:21.148 -07 000000415 INF: Autofocus finished
17-03-17 21:58:21.348 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:21.348 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:58:21.348 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.1355166137264. ----------
17-03-17 21:58:21.358 -07 000000610 INF: Cycle	57	Tile	17	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:21.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28112, sync = True, waitForSettling = True)
17-03-17 21:58:21.358 -07 000000610 INF: Z Motor: Moving to -0.128688 mm, started at -0.135517 mm, distance = 6.83 um
17-03-17 21:58:21.358 -07 000000610 INF: FPGA: Xmit ZDACW 28112\n [Z Motor]
17-03-17 21:58:21.358 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:58:21.368 -07 000000610 INF: FPGA: 'ZDACW 28112' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:21.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:21.368 -07 000000433 INF: FPGA: Recv ZDACR 28112
17-03-17 21:58:21.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:21.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.528 -07 000000433 INF: FPGA: Recv ZSGSRD 29320
17-03-17 21:58:21.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.538 -07 000000415 INF: FPGA: Recv ZSGSRD 29323
17-03-17 21:58:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.548 -07 000000012 INF: FPGA: Recv ZSGSRD 29322
17-03-17 21:58:21.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.558 -07 000000475 INF: FPGA: Recv ZSGSRD 29320
17-03-17 21:58:21.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.568 -07 000000433 INF: FPGA: Recv ZSGSRD 29328
17-03-17 21:58:21.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.578 -07 000000012 INF: FPGA: Recv ZSGSRD 29323
17-03-17 21:58:21.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.588 -07 000000433 INF: FPGA: Recv ZSGSRD 29322
17-03-17 21:58:21.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.598 -07 000000415 INF: FPGA: Recv ZSGSRD 29321
17-03-17 21:58:21.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.608 -07 000000012 INF: FPGA: Recv ZSGSRD 29324
17-03-17 21:58:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:21.618 -07 000000475 INF: FPGA: Recv ZSGSRD 29325
17-03-17 21:58:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:21.628 -07 000000012 INF: FPGA: Recv ZPIEZORD 25023
17-03-17 21:58:21.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:21.638 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.4 V.
17-03-17 21:58:21.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29323 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29320 (-127.9 uncal um), Max = 29328 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:58:21.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29323, posNoise = 5, negNoise = 3
17-03-17 21:58:21.638 -07 000000610 INF: Z Motor: After move to -0.128688, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:21.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:58:21.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:21.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:21.638 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:21.638 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:21.638 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:21.638 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:21.638 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:21.638 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:21.638 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:21.638 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:21.638 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:58:21.638 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:21.648 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:58:21.648 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:21.648 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:58:21.648 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:21.658 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:58:21.658 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:58:21.658 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:58:21.658 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:58:21.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28288 150\n [Camera]
17-03-17 21:58:21.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:21.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:22.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:22.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:22.298 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:22.298 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:22.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:58:22.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:22.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:22.308 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:22.308 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:22.308 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:58:22.488 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28288 827
17-03-17 21:58:22.638 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:58:22.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:58:22.678 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:58:22.678 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:22.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:58:22.678 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:58:22.678 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:22.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:22.678 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:58:22.688 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:22.688 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:58:22.858 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:22.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:22.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:22.858 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:22.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:58:22.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:22.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:22.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:22.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:22.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:58:23.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:58:23.048 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:23.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28288 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-17 21:58:23.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:23.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128700524643992. ------
17-03-17 21:58:23.048 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:23.048 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13503 mm
17-03-17 21:58:23.048 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:23.058 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:23.058 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:58:23.058 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:23.058 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:58:23.058 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:58:23.058 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29498, sync = True, waitForSettling = False)
17-03-17 21:58:23.058 -07 000000486 INF: Z Motor: Moving to -0.135033 mm, started at -0.128701 mm, distance = -6.33 um
17-03-17 21:58:23.068 -07 000000486 INF: FPGA: Xmit ZDACW 29498\n [Z Motor]
17-03-17 21:58:23.068 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:58:23.078 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:23.078 -07 000000486 INF: FPGA: 'ZDACW 29498' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:58:23.078 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:58:23.088 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:58:23.088 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:23.088 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:23.088 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:23.088 -07 000000569 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:58:23.088 -07 000000627 INF: FPGA: Recv ZDACR 29498
17-03-17 21:58:23.098 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:23.098 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:58:23.098 -07 000000486 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:58:23.258 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:58:23.258 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:58:23.258 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:23.258 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:58:23.258 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:58:23.258 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:23.258 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:23.258 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:58:23.258 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:23.268 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:58:23.268 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:58:23.268 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:58:23.468 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:58:23.468 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:58:23.498 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:23.508 -07 000000627 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:58:23.508 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:58:23.508 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:23.508 -07 000000569 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:58:23.508 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.187 mm/sec
17-03-17 21:58:24.298 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.030322,
17-03-17 21:58:24.458 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:24.458 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:58:24.468 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.468 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:24.478 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:24.478 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:58:24.478 -07 000000569 INF: Y Motor: Moved to 74.0083 after 1425 ms (table move)
17-03-17 21:58:24.488 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135033 mm (DAC = 29498)
17-03-17 21:58:24.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.488 -07 000000458 INF: FPGA: Recv ZSGSRD 30314
17-03-17 21:58:24.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:24.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.498 -07 000000576 INF: FPGA: Recv ZSGSRD 30307
17-03-17 21:58:24.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.508 -07 000000458 INF: FPGA: Recv ZSGSRD 30306
17-03-17 21:58:24.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.518 -07 000000547 INF: FPGA: Recv ZSGSRD 30310
17-03-17 21:58:24.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30316
17-03-17 21:58:24.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.538 -07 000000458 INF: FPGA: Recv ZSGSRD 30312
17-03-17 21:58:24.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.548 -07 000000459 INF: FPGA: Recv ZSGSRD 30310
17-03-17 21:58:24.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.558 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.558 -07 000000433 INF: FPGA: Recv ZSGSRD 30312
17-03-17 21:58:24.568 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.568 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.568 -07 000000475 INF: FPGA: Recv ZSGSRD 30308
17-03-17 21:58:24.578 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.578 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:24.578 -07 000000486 INF: FPGA: Recv ZSGSRD 30310
17-03-17 21:58:24.588 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.588 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:24.588 -07 000000458 INF: FPGA: Recv ZPIEZORD 26331
17-03-17 21:58:24.598 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:24.598 -07 000000012 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.501 V. Piezo Error = -8.8 V.
17-03-17 21:58:24.598 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30310 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30310 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30306 (-134.2 uncal um), Max = 30316 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:58:24.598 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30310, posNoise = 6, negNoise = 4
17-03-17 21:58:24.598 -07 000000012 INF: Z Motor: After move to -0.135033, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:24.598 -07 000000012 INF: Z Motor: Settle wait time = 1430 ms, measure time = 107 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:58:24.598 -07 000000012 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:24.648 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:58:24.648 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:24.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:24.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:24.648 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:24.648 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:24.648 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:24.648 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:24.648 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:24.648 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:24.658 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:58:24.658 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:24.668 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:58:24.668 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:58:24.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:24.718 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:24.918 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:24.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:24.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:24.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 21:58:24.958 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:24.958 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:24.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:58:25.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:58:25.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:25.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:58:25.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 21:58:25.058 -07 000000415 INF: Autofocus start
17-03-17 21:58:25.058 -07 000000415 INF: MeasureProfile start
17-03-17 21:58:25.058 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:25.058 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:25.068 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:25.068 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:25.068 -07 000000415 INF: MeasureProfile done
17-03-17 21:58:25.068 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:58:25.068 -07 000000415 INF: Autofocus finished
17-03-17 21:58:25.268 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:25.268 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:58:25.268 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13504122202791. ----------
17-03-17 21:58:25.268 -07 000000610 INF: Cycle	57	Tile	18	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:25.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28005, sync = True, waitForSettling = True)
17-03-17 21:58:25.278 -07 000000610 INF: Z Motor: Moving to -0.128199 mm, started at -0.135041 mm, distance = 6.84 um
17-03-17 21:58:25.278 -07 000000610 INF: FPGA: Xmit ZDACW 28005\n [Z Motor]
17-03-17 21:58:25.278 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:58:25.288 -07 000000610 INF: FPGA: 'ZDACW 28005' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:58:25.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:25.288 -07 000000576 INF: FPGA: Recv ZDACR 28005
17-03-17 21:58:25.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.448 -07 000000475 INF: FPGA: Recv ZSGSRD 29248
17-03-17 21:58:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:25.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.458 -07 000000475 INF: FPGA: Recv ZSGSRD 29244
17-03-17 21:58:25.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29241
17-03-17 21:58:25.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.478 -07 000000576 INF: FPGA: Recv ZSGSRD 29251
17-03-17 21:58:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29250
17-03-17 21:58:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.498 -07 000000475 INF: FPGA: Recv ZSGSRD 29245
17-03-17 21:58:25.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.508 -07 000000415 INF: FPGA: Recv ZSGSRD 29241
17-03-17 21:58:25.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29245
17-03-17 21:58:25.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29249
17-03-17 21:58:25.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:25.538 -07 000000475 INF: FPGA: Recv ZSGSRD 29242
17-03-17 21:58:25.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:25.548 -07 000000576 INF: FPGA: Recv ZPIEZORD 24939
17-03-17 21:58:25.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:25.558 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.5 V.
17-03-17 21:58:25.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29246 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29245 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29241 (-127.4 uncal um), Max = 29251 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:58:25.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29246, posNoise = 5, negNoise = 5
17-03-17 21:58:25.558 -07 000000610 INF: Z Motor: After move to -0.128199, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:25.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:58:25.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:25.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:25.558 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:25.558 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:25.558 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:25.558 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:25.558 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:58:25.558 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:25.558 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:25.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:25.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:58:25.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:25.568 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:58:25.568 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:25.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:58:25.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:25.578 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:58:25.578 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:58:25.578 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:58:25.578 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:58:25.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28182 150\n [Camera]
17-03-17 21:58:25.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:26.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:26.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:26.228 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:26.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:26.228 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:26.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:58:26.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:26.228 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:26.228 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:26.228 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:58:26.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28182 827
17-03-17 21:58:26.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:58:26.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:58:26.608 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:58:26.608 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:26.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:58:26.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:58:26.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:26.608 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:26.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:26.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:58:26.618 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:58:26.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:26.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:26.778 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:26.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:26.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:58:26.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:26.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:26.778 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:26.908 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:26.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:58:26.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 56. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:26.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1382
17-03-17 21:58:26.968 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:26.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28182 150' command took 2 ms to send, 1385 ms to get response, and 1389 ms overall
17-03-17 21:58:26.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:58:26.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128205860309076. ------
17-03-17 21:58:26.978 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:26.978 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13461 mm
17-03-17 21:58:26.978 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:58:26.978 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:26.978 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:58:26.978 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:58:26.978 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29405, sync = True, waitForSettling = False)
17-03-17 21:58:26.978 -07 000000424 INF: Z Motor: Moving to -0.134607 mm, started at -0.128206 mm, distance = -6.40 um
17-03-17 21:58:26.988 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:26.988 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:26.988 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:58:26.998 -07 000000424 INF: FPGA: Xmit ZDACW 29405\n [Z Motor]
17-03-17 21:58:26.998 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:58:26.998 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:26.998 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:58:26.998 -07 000000576 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:58:26.998 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:58:27.008 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:58:27.008 -07 000000424 INF: FPGA: 'ZDACW 29405' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:58:27.018 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:58:27.028 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:27.028 -07 000000476 INF: FPGA: Recv ZDACR 29405
17-03-17 21:58:27.038 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:58:27.038 -07 000000424 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:58:27.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:58:27.178 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:58:27.178 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:27.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:58:27.178 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:58:27.208 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:58:27.208 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:58:27.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:58:27.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:58:27.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:27.298 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:58:27.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 21:58:27.388 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:58:27.388 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:58:27.418 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:27.418 -07 000000012 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:58:27.428 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:58:27.428 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:27.428 -07 000000576 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:58:27.428 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 21:58:28.378 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:28.378 -07 000000569 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:58:28.388 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.388 -07 000000576 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:28.398 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:28.398 -07 000000576 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:58:28.398 -07 000000576 INF: Y Motor: Moved to 74.8325 after 1421 ms (table move)
17-03-17 21:58:28.408 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134607 mm (DAC = 29405)
17-03-17 21:58:28.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.408 -07 000000424 INF: FPGA: Recv ZSGSRD 30243
17-03-17 21:58:28.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:28.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.418 -07 000000576 INF: FPGA: Recv ZSGSRD 30234
17-03-17 21:58:28.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.428 -07 000000502 INF: FPGA: Recv ZSGSRD 30237
17-03-17 21:58:28.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:28.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.438 -07 000000569 INF: FPGA: Recv ZSGSRD 30244
17-03-17 21:58:28.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.448 -07 000000476 INF: FPGA: Recv ZSGSRD 30243
17-03-17 21:58:28.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.458 -07 000000502 INF: FPGA: Recv ZSGSRD 30246
17-03-17 21:58:28.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.468 -07 000000476 INF: FPGA: Recv ZSGSRD 30248
17-03-17 21:58:28.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.478 -07 000000569 INF: FPGA: Recv ZSGSRD 30249
17-03-17 21:58:28.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.488 -07 000000502 INF: FPGA: Recv ZSGSRD 30244
17-03-17 21:58:28.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:28.498 -07 000000569 INF: FPGA: Recv ZSGSRD 30233
17-03-17 21:58:28.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.508 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:28.508 -07 000000569 INF: FPGA: Recv ZPIEZORD 26281
17-03-17 21:58:28.518 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:28.518 -07 000000382 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -8.7 V.
17-03-17 21:58:28.518 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30242 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30244 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30233 (-133.8 uncal um), Max = 30249 (-133.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:58:28.518 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30242, posNoise = 7, negNoise = 9
17-03-17 21:58:28.518 -07 000000382 INF: Z Motor: After move to -0.134607, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:28.518 -07 000000382 INF: Z Motor: Settle wait time = 1424 ms, measure time = 111 ms (allowed 150 ms), total time = 1535 ms
17-03-17 21:58:28.518 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:58:28.558 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 21:58:28.558 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:58:28.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:28.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:28.558 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:28.558 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:28.558 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:58:28.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:28.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:58:28.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:58:28.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:58:28.568 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:58:28.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:58:28.578 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:58:28.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:58:28.628 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:58:28.828 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:58:28.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:58:28.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:58:28.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 21:58:28.868 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:58:28.868 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:58:28.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:58:28.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:58:28.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:28.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:58:28.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:58:28.968 -07 000000476 INF: Autofocus start
17-03-17 21:58:28.968 -07 000000476 INF: MeasureProfile start
17-03-17 21:58:28.968 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:58:28.968 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:58:28.978 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:58:28.978 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:58:28.978 -07 000000476 INF: MeasureProfile done
17-03-17 21:58:28.978 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:58:28.978 -07 000000476 INF: Autofocus finished
17-03-17 21:58:29.178 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:58:29.178 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:58:29.178 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.13460437560227. ----------
17-03-17 21:58:29.178 -07 000000610 INF: Cycle	57	Tile	19	Exposure Settings		A	442	G	213	T	213	C	442
17-03-17 21:58:29.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27929, sync = True, waitForSettling = True)
17-03-17 21:58:29.188 -07 000000610 INF: Z Motor: Moving to -0.127851 mm, started at -0.134604 mm, distance = 6.75 um
17-03-17 21:58:29.188 -07 000000610 INF: FPGA: Xmit ZDACW 27929\n [Z Motor]
17-03-17 21:58:29.188 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:58:29.198 -07 000000610 INF: FPGA: 'ZDACW 27929' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:58:29.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:58:29.198 -07 000000547 INF: FPGA: Recv ZDACR 27929
17-03-17 21:58:29.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:58:29.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.358 -07 000000415 INF: FPGA: Recv ZSGSRD 29189
17-03-17 21:58:29.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29194
17-03-17 21:58:29.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.378 -07 000000547 INF: FPGA: Recv ZSGSRD 29189
17-03-17 21:58:29.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.388 -07 000000459 INF: FPGA: Recv ZSGSRD 29190
17-03-17 21:58:29.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.398 -07 000000012 INF: FPGA: Recv ZSGSRD 29194
17-03-17 21:58:29.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.408 -07 000000475 INF: FPGA: Recv ZSGSRD 29195
17-03-17 21:58:29.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.418 -07 000000415 INF: FPGA: Recv ZSGSRD 29192
17-03-17 21:58:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.428 -07 000000569 INF: FPGA: Recv ZSGSRD 29188
17-03-17 21:58:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.438 -07 000000475 INF: FPGA: Recv ZSGSRD 29185
17-03-17 21:58:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:58:29.448 -07 000000459 INF: FPGA: Recv ZSGSRD 29193
17-03-17 21:58:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:58:29.458 -07 000000547 INF: FPGA: Recv ZPIEZORD 24873
17-03-17 21:58:29.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:29.468 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.5 V.
17-03-17 21:58:29.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29191 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29191 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29185 (-127.0 uncal um), Max = 29195 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:58:29.468 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29191, posNoise = 4, negNoise = 6
17-03-17 21:58:29.468 -07 000000610 INF: Z Motor: After move to -0.127851, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:58:29.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:58:29.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:58:29.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:58:29.468 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:58:29.468 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:58:29.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:58:29.468 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:58:29.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:58:29.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:58:29.478 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:58:29.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:58:29.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:58:29.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:58:29.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:58:29.478 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:58:29.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:58:29.478 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:58:29.488 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:58:29.488 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:58:29.498 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:58:29.498 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:58:29.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 442 442 213 213 28106 150\n [Camera]
17-03-17 21:58:29.678 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.015368,
17-03-17 21:58:29.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:58:30.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 634
17-03-17 21:58:30.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 634
17-03-17 21:58:30.138 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:30.138 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 634
17-03-17 21:58:30.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 634
17-03-17 21:58:30.138 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:30.148 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:30.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:58:30.148 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:30.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1459256440, 0x0, 418435064) start.
17-03-17 21:58:30.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28106 827
17-03-17 21:58:30.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 977
17-03-17 21:58:30.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:58:30.528 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:58:30.528 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:30.528 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1459256440, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:58:30.528 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:58:30.528 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:30.528 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:30.528 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:58:30.528 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:30.548 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:58:30.698 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1190
17-03-17 21:58:30.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1190
17-03-17 21:58:30.698 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:58:30.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1190
17-03-17 21:58:30.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1190
17-03-17 21:58:30.698 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:58:30.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:58:30.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:58:30.828 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:58:30.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:58:30.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 21:58:30.888 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:58:30.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 442 442 213 213 28106 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-17 21:58:31.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:58:31.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:58:31.208 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:58:31.208 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:31.208 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:58:31.208 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:58:31.218 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:31.218 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 21:58:31.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:58:31.218 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:58:31.218 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 21:58:31.258 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:58:31.258 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:58:31.298 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 21:58:31.308 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 21:58:31.318 -07 000000610 INF: Imaging Cycle 57: ScanTilesCommand Cycle 57 time end. Duration was 171229 ms.
17-03-17 21:58:31.318 -07 000000610 INF: =================== Cycle #57 ===================
17-03-17 21:58:31.318 -07 000000610 INF: ===================  ===================
17-03-17 21:58:31.318 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:58:31.318 -07 000000431 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 21:58:31.328 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:31.328 -07 000000486 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 21:58:31.328 -07 000000486 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 57, FrontChillerTemperature: 4.015368, FrontChillerHeatSinkTemperature: 0.366539, AmbientTemperature: 19.03502, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.76419, GreenLEDSensorTemperature: 26.27255, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 21:58:31.368 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.