17-03-17 21:58:31.418 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:58:31.418 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:58:31.418 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:58:31.418 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:31.418 -07 000000433 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:58:31.428 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:58:31.428 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:31.428 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:58:31.428 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:58:31.428 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:58:31.538 -07 000000012 INF: FPGA: Recv YMVTO 154378 871
17-03-17 21:58:31.538 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:58:31.538 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 21:58:31.538 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 21:58:31.538 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.684 mm/sec
17-03-17 21:58:31.928 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:34.538 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:58:34.538 -07 000000012 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:58:34.548 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:58:34.548 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:58:34.568 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:58:34.568 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 21:58:34.568 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3147 ms
17-03-17 21:58:34.568 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 60° ===================
17-03-17 21:58:34.578 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:58:34.578 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:58:34.578 -07 000000012 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:58:34.588 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:34.588 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:58:34.588 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 21:58:34.598 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:58:34.598 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 60° ===================
17-03-17 21:58:34.598 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:58:34.598 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:58:34.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:58:34.618 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:58:34.618 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:58:34.618 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:58:34.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:58:34.938 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:58:34.938 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:58:34.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:58:35.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:58:35.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:58:35.038 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.971733,
17-03-17 21:58:35.108 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:58:35.108 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:58:35.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:35.138 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:58:35.138 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:58:35.138 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:58:35.268 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:58:35.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:36.928 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:36.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=892, R2=911, Total=1803. Warn if over 250 bubbles per interval.
17-03-17 21:58:38.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:38.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:38.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:38.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:39.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:39.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:39.368 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:58:39.368 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:58:39.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:39.528 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:58:39.528 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:58:39.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:39.688 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:58:39.688 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:58:39.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:58:39.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:58:39.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:40.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:40.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:40.308 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:58:40.308 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:58:40.408 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.985358,
17-03-17 21:58:41.528 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:58:41.528 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:58:41.528 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:58:41.548 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:58:41.548 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:58:41.548 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:58:41.688 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:58:41.708 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:58:41.708 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:58:41.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:58:41.778 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:58:41.778 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:58:41.878 -07 000000610 INF: =================== Cycle #58, Pumping Reagent CMS (4) ===================
17-03-17 21:58:41.878 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:58:41.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:41.908 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:58:41.908 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:58:41.908 -07 000000610 INF: =================== Cycle #58, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:58:41.928 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 3
17-03-17 21:58:41.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=3, R2=4, Total=7. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=895, R2=915, Total=1810. Warn if over 250 bubbles per interval.
17-03-17 21:58:42.038 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:58:42.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:43.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:43.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:43.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:43.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:43.998 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:58:43.998 -07 000000610 INF: =================== Cycle #58, Pumping Reagent CMS (4) ===================
17-03-17 21:58:44.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:44.158 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:58:44.158 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:58:44.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:44.318 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:58:44.318 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:58:44.318 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:58:44.448 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:58:44.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:44.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:44.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:44.938 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:58:44.938 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:58:45.778 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.004458,
17-03-17 21:58:46.158 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:58:46.158 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:58:46.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:58:46.178 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:58:46.178 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:58:46.178 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:58:46.328 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:58:46.348 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:58:46.348 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:58:46.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:58:46.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:58:46.418 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:58:46.518 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:58:46.518 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:58:46.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:46.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:58:46.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:58:46.548 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:58:46.678 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:58:46.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:46.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 21:58:46.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=897, R2=918, Total=1815. Warn if over 250 bubbles per interval.
17-03-17 21:58:47.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:47.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:47.618 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:58:47.618 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:58:47.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:47.778 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:58:47.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:58:47.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:47.938 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:58:47.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:58:47.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:58:48.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:58:48.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:48.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:48.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:48.558 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:58:48.558 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:58:48.558 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:58:48.558 -07 000000458 INF: WaitCommand(10000) start
17-03-17 21:58:48.558 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:58:49.778 -07 000000627 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:58:49.778 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 21:58:49.808 -07 000000627 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:58:49.808 -07 000000627 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:58:49.938 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:58:49.978 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:51.148 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.014009,
17-03-17 21:58:51.508 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:51.908 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:58:51.928 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:51.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=897, R2=918, Total=1815. Warn if over 250 bubbles per interval.
17-03-17 21:58:52.328 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 21:58:52.358 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:58:52.358 -07 000000627 INF: LanePump: Waited 2379 ms for pump motion to complete
17-03-17 21:58:52.358 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:58:52.358 -07 000000627 INF: ===================  ===================
17-03-17 21:58:56.928 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:58:56.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=897, R2=918, Total=1815. Warn if over 250 bubbles per interval.
17-03-17 21:58:57.258 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.024884,
17-03-17 21:58:58.568 -07 000000458 INF: WaitCommand(10000) end
17-03-17 21:58:58.568 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:58:58.568 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:58:58.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:58:58.598 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:58:58.598 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:58:58.598 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:58:58.728 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:58:58.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:01.928 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:01.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=897, R2=918, Total=1815. Warn if over 250 bubbles per interval.
17-03-17 21:59:02.628 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.043918,
17-03-17 21:59:04.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:04.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:05.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:05.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:05.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:05.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:06.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:06.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:06.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:06.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:06.728 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:59:06.728 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:59:06.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:06.888 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:59:06.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:59:06.928 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 7
17-03-17 21:59:06.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=7, R2=6, Total=13. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=904, R2=924, Total=1828. Warn if over 250 bubbles per interval.
17-03-17 21:59:07.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:07.048 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:59:07.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:59:07.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:59:07.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:59:07.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:07.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:07.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:07.668 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:59:07.668 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:59:07.988 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.049392,
17-03-17 21:59:08.888 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:59:08.888 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:59:08.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:59:08.908 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:59:08.908 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:59:08.908 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:59:09.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:59:09.138 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:59:09.138 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:59:09.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:59:09.208 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:59:09.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:59:09.308 -07 000000610 INF: =================== Cycle #58, Pumping Reagent IMT (1) ===================
17-03-17 21:59:09.308 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:59:09.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:09.338 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:59:09.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:59:09.338 -07 000000610 INF: =================== Cycle #58, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:59:09.468 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:59:09.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:10.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:10.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:11.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:11.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:11.428 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 21:59:11.428 -07 000000610 INF: =================== Cycle #58, Pumping Reagent IMT (1) ===================
17-03-17 21:59:11.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:11.588 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:59:11.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:59:11.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:11.748 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:59:11.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:59:11.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:59:11.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:59:11.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:11.928 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 21:59:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=925, Total=1831. Warn if over 250 bubbles per interval.
17-03-17 21:59:12.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:12.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:12.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:59:12.368 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:59:13.358 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.011254,
17-03-17 21:59:13.588 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:59:13.588 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:59:13.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:59:13.608 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:59:13.608 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:59:13.608 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:59:13.838 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:59:13.858 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:59:13.858 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:59:13.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:59:13.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:59:13.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:59:14.028 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:59:14.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:59:14.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:14.058 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:59:14.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:59:14.058 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:59:14.188 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:59:14.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:15.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:15.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:15.128 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 21:59:15.128 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:59:15.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:15.288 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:59:15.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:59:15.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:15.448 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:59:15.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:59:15.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:59:15.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:59:15.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:16.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:16.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:16.068 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:59:16.068 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:59:16.068 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 65° ===================
17-03-17 21:59:16.068 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:59:16.068 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:59:16.068 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:59:16.078 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:59:16.078 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:59:16.078 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 21:59:16.088 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:59:16.088 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 65° ===================
17-03-17 21:59:16.088 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:59:16.088 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:59:16.928 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:59:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:18.728 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.996267,
17-03-17 21:59:21.928 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:24.098 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.003063,
17-03-17 21:59:26.928 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:30.228 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.981281,
17-03-17 21:59:31.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:35.588 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.994908,
17-03-17 21:59:36.928 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:36.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:40.958 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.009895,
17-03-17 21:59:41.928 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:41.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:46.098 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:59:46.098 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:59:46.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:59:46.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:46.228 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:59:46.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:59:46.228 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:59:46.328 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.027603,
17-03-17 21:59:46.358 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:59:46.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:46.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:46.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:46.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:46.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:46.968 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 21:59:46.968 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 21:59:47.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:47.128 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:59:47.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:59:47.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:59:47.288 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:59:47.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:59:47.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:59:47.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:59:47.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:47.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:47.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:47.908 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:59:47.908 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 21:59:47.908 -07 000000608 INF: WaitCommand(30000) start
17-03-17 21:59:47.908 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:59:47.908 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:59:49.128 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:59:49.128 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-17 21:59:49.158 -07 000000576 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:59:49.158 -07 000000576 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:59:49.288 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:59:49.328 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:51.668 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:51.698 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:59:51.698 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.019446,
17-03-17 21:59:51.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:51.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:52.118 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-17 21:59:52.148 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:59:52.148 -07 000000576 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:59:52.148 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:59:52.148 -07 000000576 INF: ===================  ===================
17-03-17 21:59:56.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:59:56.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 21:59:57.068 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.996267,
17-03-17 22:00:01.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:01.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:02.438 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.978563,
17-03-17 22:00:06.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:06.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:07.808 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.964938,
17-03-17 22:00:11.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:13.168 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.003063,
17-03-17 22:00:16.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:17.918 -07 000000608 INF: WaitCommand(30000) end
17-03-17 22:00:17.918 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 22° ===================
17-03-17 22:00:17.918 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:00:17.918 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:00:17.918 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:00:17.928 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:00:17.928 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:00:17.928 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 22:00:17.938 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:17.938 -07 000000610 INF: =================== Cycle #58, Flow Cell Temp 22° ===================
17-03-17 22:00:17.938 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 22:00:17.938 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 22:00:17.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:00:17.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:17.978 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:00:17.978 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:00:17.978 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:00:18.108 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:00:18.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:18.528 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.030322,
17-03-17 22:00:21.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:21.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:21.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:21.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:21.928 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:22.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:22.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:22.208 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:00:22.208 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 22:00:22.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:22.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:00:22.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:00:23.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:23.128 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:00:23.128 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:00:23.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:00:23.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:00:23.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:23.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:23.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:23.748 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:00:23.748 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 22:00:23.888 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.004458,
17-03-17 22:00:24.968 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:00:24.968 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:00:24.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:00:24.988 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:00:24.988 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:00:24.988 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:00:25.138 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:00:25.158 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:00:25.158 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:00:25.208 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:00:25.228 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:00:25.228 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:00:25.328 -07 000000610 INF: =================== Cycle #58, Pumping Reagent USM (2) ===================
17-03-17 22:00:25.328 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:00:25.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:25.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:00:25.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:00:25.358 -07 000000610 INF: =================== Cycle #58, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:00:25.488 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:00:25.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:26.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:26.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:26.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:27.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:27.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:27.448 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:00:27.448 -07 000000610 INF: =================== Cycle #58, Pumping Reagent USM (2) ===================
17-03-17 22:00:27.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:27.608 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:00:27.608 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:00:27.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:27.768 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:00:27.768 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:00:27.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:00:27.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:00:27.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:28.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:28.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:28.388 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:00:28.388 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 22:00:29.248 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.973092,
17-03-17 22:00:29.608 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 22:00:29.608 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:00:29.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:00:29.628 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:00:29.628 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:00:29.628 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:00:29.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:00:29.798 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:00:29.798 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:00:29.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:00:29.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:00:29.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:00:29.968 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 22:00:29.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:00:29.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:29.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:00:29.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:00:29.998 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:00:30.128 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:00:30.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:31.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:31.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:31.068 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 22:00:31.068 -07 000000610 INF: =================== Cycle #58, Pumping Reagent PR2 (3) ===================
17-03-17 22:00:31.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:31.228 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:00:31.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:00:31.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:00:31.388 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:00:31.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:00:31.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:00:31.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:00:31.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:31.928 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:31.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:32.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:32.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:00:32.008 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 22:00:32.008 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:00:32.008 -07 000000608 INF: WaitCommand(10000) start
17-03-17 22:00:32.008 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:00:33.228 -07 000000502 INF: AsyncDelayTimer waited 1217ms
17-03-17 22:00:33.228 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 22:00:33.268 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:00:33.268 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:00:33.398 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:00:33.438 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:34.608 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.000345,
17-03-17 22:00:34.968 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:34.998 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:00:35.418 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 22:00:35.448 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:00:35.448 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:00:35.448 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:00:35.448 -07 000000502 INF: ===================  ===================
17-03-17 22:00:36.928 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:36.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:39.968 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.999021,
17-03-17 22:00:41.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:41.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:42.018 -07 000000608 INF: WaitCommand(10000) end
17-03-17 22:00:42.018 -07 000000610 INF: =================== Cycle #58, Imaging ===================
17-03-17 22:00:42.018 -07 000000610 INF: Imaging Cycle 58: ScanTilesCommand Cycle 58 time start.
17-03-17 22:00:42.018 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:00:42.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:00:42.048 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:00:42.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:00:42.048 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:00:42.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:00:42.368 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:00:42.368 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:00:42.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:00:42.438 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:00:42.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:42.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:42.438 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:00:42.438 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:42.438 -07 000000627 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:00:42.448 -07 000000608 INF: FPGA: Recv EXLED1ON 
17-03-17 22:00:42.448 -07 000000627 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:00:42.448 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:00:42.448 -07 000000608 INF: FPGA: Recv EXLED1ADCR 23176
17-03-17 22:00:42.458 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:42.458 -07 000000627 INF: RedLED: Using Red data: Photodiode ADC 23176 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 198.0 mW
17-03-17 22:00:42.458 -07 000000627 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:00:42.458 -07 000000415 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:00:42.468 -07 000000627 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:42.468 -07 000000627 INF: RedLED: LED was on for 19 ms
17-03-17 22:00:42.468 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 22:00:42.468 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:00:42.468 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:42.468 -07 000000627 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:00:42.468 -07 000000415 INF: FPGA: Recv EXLED2ON 
17-03-17 22:00:42.478 -07 000000627 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:00:42.478 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:00:42.478 -07 000000482 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 22:00:42.488 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:42.488 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 22:00:42.488 -07 000000627 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:00:42.488 -07 000000608 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:00:42.498 -07 000000627 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:42.498 -07 000000627 INF: GreenLED: LED was on for 20 ms
17-03-17 22:00:42.498 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:00:42.498 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:00:42.498 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 22:00:42.508 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:00:42.508 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:00:43.008 -07 000000458 INF: FPGA: Recv EMOUT
17-03-17 22:00:43.008 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 22:00:43.008 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:00:43.008 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 22:00:43.018 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:00:43.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:00:43.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127852528641279. ------
17-03-17 22:00:43.018 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:43.018 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17955 mm
17-03-17 22:00:43.018 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:00:43.018 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:43.028 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:00:43.028 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:00:43.028 -07 000000608 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 22:00:43.028 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:00:43.028 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 39223, sync = True, waitForSettling = False)
17-03-17 22:00:43.028 -07 000000569 INF: Z Motor: Moving to -0.179551 mm, started at -0.127853 mm, distance = -51.70 um
17-03-17 22:00:43.038 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:43.038 -07 000000502 INF: FPGA: Recv YRDPOS 154380
17-03-17 22:00:43.048 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:00:43.048 -07 000000608 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:43.048 -07 000000608 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:00:43.048 -07 000000608 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:00:43.048 -07 000000569 INF: FPGA: Xmit ZDACW 39223\n [Z Motor]
17-03-17 22:00:43.048 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:00:43.058 -07 000000569 INF: FPGA: 'ZDACW 39223' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:00:43.058 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:43.058 -07 000000415 INF: FPGA: Recv ZDACR 39223
17-03-17 22:00:43.068 -07 000000569 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:43.068 -07 000000569 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:00:43.068 -07 000000608 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:00:43.228 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:00:43.228 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:00:44.748 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 22:00:44.748 -07 000000608 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1707 ms overall
17-03-17 22:00:44.748 -07 000000608 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:00:44.748 -07 000000608 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 22:00:44.748 -07 000000608 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1708 ms, distance = 15.468 mm, average velocity = 9.056 mm/sec
17-03-17 22:00:45.328 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.988112,
17-03-17 22:00:46.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:46.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:47.598 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:47.598 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:00:47.608 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.608 -07 000000608 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:47.628 -07 000000608 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:00:47.628 -07 000000608 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:00:47.628 -07 000000608 INF: Y Motor: Moved to 59.9106 after 4605 ms
17-03-17 22:00:47.628 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179551 mm (DAC = 39223)
17-03-17 22:00:47.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.638 -07 000000415 INF: FPGA: Recv ZSGSRD 37240
17-03-17 22:00:47.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:00:47.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.638 -07 000000501 INF: FPGA: Recv ZSGSRD 37237
17-03-17 22:00:47.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:00:47.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.648 -07 000000576 INF: FPGA: Recv ZSGSRD 37233
17-03-17 22:00:47.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.658 -07 000000478 INF: FPGA: Recv ZSGSRD 37234
17-03-17 22:00:47.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.668 -07 000000478 INF: FPGA: Recv ZSGSRD 37244
17-03-17 22:00:47.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.678 -07 000000576 INF: FPGA: Recv ZSGSRD 37242
17-03-17 22:00:47.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.688 -07 000000576 INF: FPGA: Recv ZSGSRD 37237
17-03-17 22:00:47.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.698 -07 000000576 INF: FPGA: Recv ZSGSRD 37240
17-03-17 22:00:47.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.708 -07 000000569 INF: FPGA: Recv ZSGSRD 37239
17-03-17 22:00:47.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:47.718 -07 000000569 INF: FPGA: Recv ZSGSRD 37236
17-03-17 22:00:47.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.728 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:00:47.728 -07 000000569 INF: FPGA: Recv ZPIEZORD 33742
17-03-17 22:00:47.738 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:47.738 -07 000000482 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.985 V. Piezo Error = -7.8 V.
17-03-17 22:00:47.738 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37238 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37238 (-178.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37233 (-178.6 uncal um), Max = 37244 (-178.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:00:47.738 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37238, posNoise = 6, negNoise = 5
17-03-17 22:00:47.738 -07 000000482 INF: Z Motor: After move to -0.179551, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:00:47.738 -07 000000482 INF: Z Motor: Settle wait time = 4608 ms, measure time = 102 ms (allowed 150 ms), total time = 4710 ms
17-03-17 22:00:47.738 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:00:47.788 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 22:00:47.788 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:00:47.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:47.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:47.788 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:47.788 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:47.788 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:00:47.788 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:00:47.788 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:00:47.788 -07 000000458 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:00:47.818 -07 000000458 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:00:47.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:00:47.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:00:47.818 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:00:47.838 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:00:47.838 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 22:00:47.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:00:47.878 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:00:48.078 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:00:48.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:00:48.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:00:48.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406842600, 0x0, 559484976) start.
17-03-17 22:00:48.118 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:00:48.118 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:00:48.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:00:48.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406842600, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:00:48.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:48.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:00:48.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:00:48.318 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:49.228 -07 000000576 INF: Image SNR check: start
17-03-17 22:00:49.238 -07 000000576 INF: Image SNR check: pass  [peak (Max-Min)=59.44]
17-03-17 22:00:49.238 -07 000000576 INF: Autofocus start
17-03-17 22:00:49.238 -07 000000576 INF: MeasureProfile start
17-03-17 22:00:49.248 -07 000000576 INF: MeasureProfile done
17-03-17 22:00:49.248 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:00:49.248 -07 000000576 INF: Autofocus finished
17-03-17 22:00:49.248 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:49.248 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 927 ms to get response, and 934 ms overall
17-03-17 22:00:49.248 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:00:49.458 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:00:49.458 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 22:00:49.458 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179548163746029. ----------
17-03-17 22:00:49.458 -07 000000610 INF: Cycle	58	Tile	1	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:00:49.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37738, sync = True, waitForSettling = True)
17-03-17 22:00:49.458 -07 000000610 INF: Z Motor: Moving to -0.172753 mm, started at -0.179548 mm, distance = 6.79 um
17-03-17 22:00:49.458 -07 000000610 INF: FPGA: Xmit ZDACW 37738\n [Z Motor]
17-03-17 22:00:49.468 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:00:49.468 -07 000000610 INF: FPGA: 'ZDACW 37738' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:00:49.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:49.468 -07 000000458 INF: FPGA: Recv ZDACR 37738
17-03-17 22:00:49.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:00:49.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:00:49.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36183
17-03-17 22:00:49.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:49.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.638 -07 000000458 INF: FPGA: Recv ZSGSRD 36178
17-03-17 22:00:49.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.648 -07 000000576 INF: FPGA: Recv ZSGSRD 36186
17-03-17 22:00:49.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.658 -07 000000458 INF: FPGA: Recv ZSGSRD 36182
17-03-17 22:00:49.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.668 -07 000000458 INF: FPGA: Recv ZSGSRD 36183
17-03-17 22:00:49.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.678 -07 000000458 INF: FPGA: Recv ZSGSRD 36184
17-03-17 22:00:49.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.688 -07 000000576 INF: FPGA: Recv ZSGSRD 36177
17-03-17 22:00:49.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.698 -07 000000458 INF: FPGA: Recv ZSGSRD 36186
17-03-17 22:00:49.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.708 -07 000000576 INF: FPGA: Recv ZSGSRD 36180
17-03-17 22:00:49.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:49.718 -07 000000458 INF: FPGA: Recv ZSGSRD 36183
17-03-17 22:00:49.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:00:49.728 -07 000000576 INF: FPGA: Recv ZPIEZORD 32347
17-03-17 22:00:49.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:49.738 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -8.5 V.
17-03-17 22:00:49.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36182 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36183 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36177 (-171.9 uncal um), Max = 36186 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:00:49.738 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36182, posNoise = 4, negNoise = 5
17-03-17 22:00:49.738 -07 000000610 INF: Z Motor: After move to -0.172753, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:00:49.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 22:00:49.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:49.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:49.738 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:49.738 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:49.738 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:00:49.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:00:49.738 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:00:49.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:00:49.738 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:00:49.738 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:00:49.748 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:00:49.748 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:00:49.748 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:00:49.748 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:00:49.758 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:00:49.758 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:00:49.768 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 22:00:49.768 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:00:49.768 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:00:49.768 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:00:49.778 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:00:49.778 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 22:00:49.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37914 150\n [Camera]
17-03-17 22:00:49.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:00:50.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:00:50.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:00:50.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:00:50.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:00:50.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:00:50.428 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:00:50.428 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:00:50.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:00:50.438 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:00:50.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:00:50.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37914 828
17-03-17 22:00:50.688 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.011254,
17-03-17 22:00:50.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:00:50.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:00:50.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:00:50.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:50.828 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:00:50.828 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:00:50.828 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:50.838 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:00:50.838 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:00:50.838 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:00:50.838 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:00:50.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1193
17-03-17 22:00:50.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1193
17-03-17 22:00:50.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:00:50.988 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1193
17-03-17 22:00:50.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1193
17-03-17 22:00:50.988 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:00:51.128 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:00:51.128 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:00:51.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 22:00:51.128 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) start.
17-03-17 22:00:51.178 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1385
17-03-17 22:00:51.178 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:00:51.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37914 150' command took 2 ms to send, 1380 ms to get response, and 1392 ms overall
17-03-17 22:00:51.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:00:51.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.17276419572433. ------
17-03-17 22:00:51.178 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:51.178 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17909 mm
17-03-17 22:00:51.178 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:00:51.178 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:00:51.178 -07 000000458 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:00:51.178 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39122, sync = True, waitForSettling = False)
17-03-17 22:00:51.178 -07 000000502 INF: Z Motor: Moving to -0.179089 mm, started at -0.172764 mm, distance = -6.32 um
17-03-17 22:00:51.178 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:51.188 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:51.188 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:00:51.188 -07 000000569 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:00:51.198 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:00:51.198 -07 000000458 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:51.198 -07 000000458 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:00:51.198 -07 000000458 INF: Y Motor: Moving 1331 steps2
17-03-17 22:00:51.198 -07 000000502 INF: FPGA: Xmit ZDACW 39122\n [Z Motor]
17-03-17 22:00:51.198 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:00:51.208 -07 000000502 INF: FPGA: 'ZDACW 39122' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:00:51.208 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:00:51.218 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:00:51.228 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:51.228 -07 000000626 INF: FPGA: Recv ZDACR 39122
17-03-17 22:00:51.238 -07 000000502 INF: FPGA: 'ZDACR' command took 6 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:00:51.238 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 22:00:51.408 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:00:51.408 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:00:51.508 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:00:51.508 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:00:51.508 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:51.508 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:00:51.508 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:00:51.508 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:51.508 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:00:51.518 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:00:51.518 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 22:00:51.518 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 22:00:51.588 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:00:51.588 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:00:51.618 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:51.628 -07 000000576 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:00:51.628 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:00:51.628 -07 000000458 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:51.628 -07 000000458 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:00:51.628 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 22:00:51.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:51.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:52.578 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:53.228 -07 000000627 INF: FPGA: Recv YRDPOS 124380
17-03-17 22:00:53.228 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 640 ms to get response, and 650 ms overall
17-03-17 22:00:53.228 -07 000000458 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:53.248 -07 000000458 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:00:53.248 -07 000000458 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:00:53.248 -07 000000458 INF: Y Motor: Moved to 60.7324 after 2068 ms (table move)
17-03-17 22:00:53.258 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179089 mm (DAC = 39122)
17-03-17 22:00:53.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.258 -07 000000626 INF: FPGA: Recv ZSGSRD 37175
17-03-17 22:00:53.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.268 -07 000000482 INF: FPGA: Recv ZSGSRD 37165
17-03-17 22:00:53.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.278 -07 000000502 INF: FPGA: Recv ZSGSRD 37167
17-03-17 22:00:53.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.288 -07 000000608 INF: FPGA: Recv ZSGSRD 37168
17-03-17 22:00:53.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.298 -07 000000502 INF: FPGA: Recv ZSGSRD 37168
17-03-17 22:00:53.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.308 -07 000000608 INF: FPGA: Recv ZSGSRD 37169
17-03-17 22:00:53.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.318 -07 000000576 INF: FPGA: Recv ZSGSRD 37161
17-03-17 22:00:53.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.328 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.328 -07 000000482 INF: FPGA: Recv ZSGSRD 37174
17-03-17 22:00:53.338 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.338 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.338 -07 000000626 INF: FPGA: Recv ZSGSRD 37164
17-03-17 22:00:53.348 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.348 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:53.348 -07 000000458 INF: FPGA: Recv ZSGSRD 37167
17-03-17 22:00:53.358 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.358 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:00:53.358 -07 000000626 INF: FPGA: Recv ZPIEZORD 33621
17-03-17 22:00:53.368 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:53.368 -07 000000415 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.970 V. Piezo Error = -7.9 V.
17-03-17 22:00:53.368 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37168 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37168 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37161 (-178.2 uncal um), Max = 37175 (-178.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:00:53.368 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37168, posNoise = 7, negNoise = 7
17-03-17 22:00:53.368 -07 000000415 INF: Z Motor: After move to -0.179089, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:00:53.368 -07 000000415 INF: Z Motor: Settle wait time = 2071 ms, measure time = 111 ms (allowed 150 ms), total time = 2182 ms
17-03-17 22:00:53.368 -07 000000415 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:00:53.408 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2224 ms
17-03-17 22:00:53.408 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:00:53.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:53.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:53.408 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:53.408 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:53.408 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:00:53.408 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:00:53.408 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:00:53.408 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:00:53.418 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:00:53.418 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:00:53.428 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:00:53.428 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:00:53.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:00:53.478 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:00:53.678 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:00:53.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:00:53.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:00:53.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:00:53.718 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:00:53.718 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:00:53.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:00:53.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:00:53.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:53.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:00:53.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:00:53.818 -07 000000482 INF: Autofocus start
17-03-17 22:00:53.818 -07 000000482 INF: MeasureProfile start
17-03-17 22:00:53.818 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:53.818 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:53.828 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:00:53.828 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:00:53.828 -07 000000482 INF: MeasureProfile done
17-03-17 22:00:53.828 -07 000000482 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:00:53.828 -07 000000482 INF: Autofocus finished
17-03-17 22:00:54.028 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:00:54.028 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:00:54.028 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.179098468896106. ----------
17-03-17 22:00:54.038 -07 000000610 INF: Cycle	58	Tile	2	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:00:54.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37602, sync = True, waitForSettling = True)
17-03-17 22:00:54.038 -07 000000610 INF: Z Motor: Moving to -0.172131 mm, started at -0.179098 mm, distance = 6.97 um
17-03-17 22:00:54.038 -07 000000610 INF: FPGA: Xmit ZDACW 37602\n [Z Motor]
17-03-17 22:00:54.038 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:00:54.048 -07 000000610 INF: FPGA: 'ZDACW 37602' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:00:54.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:54.048 -07 000000415 INF: FPGA: Recv ZDACR 37602
17-03-17 22:00:54.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:00:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.208 -07 000000458 INF: FPGA: Recv ZSGSRD 36082
17-03-17 22:00:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36088
17-03-17 22:00:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.228 -07 000000501 INF: FPGA: Recv ZSGSRD 36083
17-03-17 22:00:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.238 -07 000000482 INF: FPGA: Recv ZSGSRD 36079
17-03-17 22:00:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36082
17-03-17 22:00:54.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.258 -07 000000482 INF: FPGA: Recv ZSGSRD 36088
17-03-17 22:00:54.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:54.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36084
17-03-17 22:00:54.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36087
17-03-17 22:00:54.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.288 -07 000000627 INF: FPGA: Recv ZSGSRD 36086
17-03-17 22:00:54.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:54.298 -07 000000501 INF: FPGA: Recv ZSGSRD 36081
17-03-17 22:00:54.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:00:54.308 -07 000000608 INF: FPGA: Recv ZPIEZORD 32157
17-03-17 22:00:54.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:54.318 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-17 22:00:54.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36084 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36084 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36079 (-171.2 uncal um), Max = 36088 (-171.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:00:54.318 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36084, posNoise = 4, negNoise = 5
17-03-17 22:00:54.318 -07 000000610 INF: Z Motor: After move to -0.172131, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:00:54.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:00:54.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:54.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:54.318 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:54.318 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:54.318 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:00:54.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:00:54.318 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:00:54.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:00:54.318 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:00:54.318 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:00:54.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:00:54.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:00:54.328 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:00:54.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:00:54.328 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:00:54.328 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:00:54.338 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:00:54.338 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:00:54.338 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:00:54.338 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:00:54.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37778 150\n [Camera]
17-03-17 22:00:54.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:00:54.988 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:00:54.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:00:54.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:00:54.988 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:00:54.988 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:00:54.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:00:54.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:00:54.988 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:00:54.988 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:00:54.988 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:00:55.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37778 828
17-03-17 22:00:55.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:00:55.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:00:55.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:00:55.388 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:55.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:00:55.388 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:00:55.388 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:55.388 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:00:55.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:00:55.398 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:00:55.398 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:00:55.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:00:55.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:00:55.548 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:00:55.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:00:55.548 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:00:55.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:00:55.548 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 22:00:55.548 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:00:55.548 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:00:55.548 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:00:55.738 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:00:55.738 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:00:55.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37778 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 22:00:55.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:00:55.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.172134622934437. ------
17-03-17 22:00:55.848 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17841 mm
17-03-17 22:00:55.848 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:00:55.848 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:55.858 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:00:55.858 -07 000000415 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 22:00:55.858 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38973, sync = True, waitForSettling = False)
17-03-17 22:00:55.858 -07 000000502 INF: Z Motor: Moving to -0.178407 mm, started at -0.172135 mm, distance = -6.27 um
17-03-17 22:00:55.858 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:55.868 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:55.868 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:55.868 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:00:55.878 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:00:55.878 -07 000000415 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:55.878 -07 000000502 INF: FPGA: Xmit ZDACW 38973\n [Z Motor]
17-03-17 22:00:55.878 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:00:55.878 -07 000000415 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:00:55.878 -07 000000415 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:00:55.888 -07 000000502 INF: FPGA: 'ZDACW 38973' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:00:55.888 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:00:55.898 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:00:55.908 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:55.908 -07 000000458 INF: FPGA: Recv ZDACR 38973
17-03-17 22:00:55.918 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:00:55.918 -07 000000502 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:00:55.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:00:55.948 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:00:55.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:00:55.948 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:00:55.948 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:55.948 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:55.948 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:00:55.948 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:00:55.948 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:00:55.958 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:00:56.048 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.99219,
17-03-17 22:00:56.088 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:00:56.088 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:00:56.278 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:00:56.278 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-17 22:00:56.308 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:56.318 -07 000000501 INF: FPGA: Recv YRDPOS 126081
17-03-17 22:00:56.318 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:00:56.318 -07 000000415 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:56.318 -07 000000415 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:00:56.318 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 22:00:56.928 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:00:56.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:00:57.268 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:57.268 -07 000000627 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:00:57.278 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:57.278 -07 000000415 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:57.298 -07 000000415 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:00:57.298 -07 000000415 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:00:57.298 -07 000000415 INF: Y Motor: Moved to 61.5635 after 1442 ms (table move)
17-03-17 22:00:57.298 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178407 mm (DAC = 38973)
17-03-17 22:00:57.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.308 -07 000000512 INF: FPGA: Recv ZSGSRD 37056
17-03-17 22:00:57.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:00:57.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.308 -07 000000627 INF: FPGA: Recv ZSGSRD 37066
17-03-17 22:00:57.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:00:57.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.318 -07 000000627 INF: FPGA: Recv ZSGSRD 37062
17-03-17 22:00:57.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.328 -07 000000627 INF: FPGA: Recv ZSGSRD 37061
17-03-17 22:00:57.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.338 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.338 -07 000000608 INF: FPGA: Recv ZSGSRD 37071
17-03-17 22:00:57.348 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.348 -07 000000608 INF: FPGA: Recv ZSGSRD 37059
17-03-17 22:00:57.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.358 -07 000000415 INF: FPGA: Recv ZSGSRD 37061
17-03-17 22:00:57.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.368 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.368 -07 000000627 INF: FPGA: Recv ZSGSRD 37065
17-03-17 22:00:57.378 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.378 -07 000000415 INF: FPGA: Recv ZSGSRD 37059
17-03-17 22:00:57.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:57.388 -07 000000627 INF: FPGA: Recv ZSGSRD 37060
17-03-17 22:00:57.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.398 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:00:57.398 -07 000000458 INF: FPGA: Recv ZPIEZORD 33549
17-03-17 22:00:57.408 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:57.408 -07 000000576 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -7.8 V.
17-03-17 22:00:57.408 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37062 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37061 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37056 (-177.5 uncal um), Max = 37071 (-177.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:00:57.408 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37062, posNoise = 9, negNoise = 6
17-03-17 22:00:57.408 -07 000000576 INF: Z Motor: After move to -0.178407, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:00:57.408 -07 000000576 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:00:57.408 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:00:57.458 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:00:57.458 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:00:57.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:57.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:57.458 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:57.458 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:57.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:00:57.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:00:57.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:00:57.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:00:57.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:00:57.458 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:00:57.468 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:00:57.468 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:00:57.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:00:57.518 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:00:57.718 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:00:57.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:00:57.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:00:57.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:00:57.758 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:00:57.758 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:00:57.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:00:57.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:00:57.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:57.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:00:57.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:00:57.858 -07 000000608 INF: Autofocus start
17-03-17 22:00:57.858 -07 000000608 INF: MeasureProfile start
17-03-17 22:00:57.858 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:57.858 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:57.868 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:00:57.868 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:00:57.868 -07 000000608 INF: MeasureProfile done
17-03-17 22:00:57.868 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:00:57.868 -07 000000608 INF: Autofocus finished
17-03-17 22:00:58.068 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:00:58.068 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:00:58.068 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.17841750240908. ----------
17-03-17 22:00:58.068 -07 000000610 INF: Cycle	58	Tile	3	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:00:58.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37488, sync = True, waitForSettling = True)
17-03-17 22:00:58.078 -07 000000610 INF: Z Motor: Moving to -0.171609 mm, started at -0.178418 mm, distance = 6.81 um
17-03-17 22:00:58.078 -07 000000610 INF: FPGA: Xmit ZDACW 37488\n [Z Motor]
17-03-17 22:00:58.078 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:00:58.088 -07 000000610 INF: FPGA: 'ZDACW 37488' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:58.088 -07 000000501 INF: FPGA: Recv ZDACR 37488
17-03-17 22:00:58.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:00:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36006
17-03-17 22:00:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:00:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36004
17-03-17 22:00:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.268 -07 000000626 INF: FPGA: Recv ZSGSRD 36000
17-03-17 22:00:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.278 -07 000000608 INF: FPGA: Recv ZSGSRD 36002
17-03-17 22:00:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:00:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36003
17-03-17 22:00:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36005
17-03-17 22:00:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36003
17-03-17 22:00:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.318 -07 000000626 INF: FPGA: Recv ZSGSRD 36002
17-03-17 22:00:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36004
17-03-17 22:00:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:00:58.338 -07 000000627 INF: FPGA: Recv ZSGSRD 36012
17-03-17 22:00:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:00:58.348 -07 000000626 INF: FPGA: Recv ZPIEZORD 32100
17-03-17 22:00:58.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:00:58.358 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.6 V.
17-03-17 22:00:58.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36004 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36004 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36000 (-170.7 uncal um), Max = 36012 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:00:58.358 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36004, posNoise = 8, negNoise = 4
17-03-17 22:00:58.358 -07 000000610 INF: Z Motor: After move to -0.171609, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:00:58.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:00:58.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:00:58.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:00:58.358 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:00:58.358 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:00:58.358 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:00:58.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:00:58.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:00:58.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:00:58.358 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:00:58.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:00:58.358 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:00:58.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:00:58.368 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:00:58.368 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:00:58.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:00:58.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:00:58.378 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 22:00:58.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:00:58.378 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:00:58.378 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:00:58.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37665 150\n [Camera]
17-03-17 22:00:58.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:00:59.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:00:59.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:00:59.028 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:00:59.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:00:59.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:00:59.028 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:00:59.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:00:59.028 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) start.
17-03-17 22:00:59.038 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:00:59.038 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 22:00:59.218 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37665 828
17-03-17 22:00:59.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:00:59.408 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:00:59.408 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 22:00:59.408 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:59.408 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:00:59.408 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:00:59.408 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:00:59.418 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:59.418 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:00:59.418 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:00:59.418 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:00:59.588 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:00:59.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:00:59.588 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:00:59.588 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:00:59.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:00:59.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:00:59.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:00:59.588 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:00:59.588 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:00:59.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:00:59.778 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:00:59.778 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:00:59.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37665 150' command took 2 ms to send, 1383 ms to get response, and 1394 ms overall
17-03-17 22:00:59.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:00:59.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171620685963096. ------
17-03-17 22:00:59.778 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:00:59.778 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17794 mm
17-03-17 22:00:59.778 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:00:59.788 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:00:59.788 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:00:59.788 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:00:59.788 -07 000000627 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 22:00:59.788 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:00:59.788 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38871, sync = True, waitForSettling = False)
17-03-17 22:00:59.788 -07 000000458 INF: Z Motor: Moving to -0.177940 mm, started at -0.171621 mm, distance = -6.32 um
17-03-17 22:00:59.788 -07 000000502 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:00:59.798 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:00:59.798 -07 000000627 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:00:59.798 -07 000000627 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:00:59.798 -07 000000627 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:00:59.798 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:00:59.808 -07 000000458 INF: FPGA: Xmit ZDACW 38871\n [Z Motor]
17-03-17 22:00:59.808 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:00:59.818 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:00:59.818 -07 000000458 INF: FPGA: 'ZDACW 38871' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:00:59.828 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:00:59.828 -07 000000502 INF: FPGA: Recv ZDACR 38871
17-03-17 22:00:59.838 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:00:59.838 -07 000000458 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:00:59.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:00:59.988 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:00:59.988 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:59.988 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:00:59.988 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:00:59.988 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:00:59.998 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:00:59.998 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:00:59.998 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:00:59.998 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:00:59.998 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 22:00:59.998 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:01:00.188 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 22:01:00.188 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:01:00.228 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:00.238 -07 000000608 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:01:00.238 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:00.238 -07 000000627 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:00.238 -07 000000627 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:01:00.238 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:01:01.188 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:01.188 -07 000000415 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:01:01.198 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:01.198 -07 000000627 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:01.218 -07 000000627 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:01.218 -07 000000627 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:01.218 -07 000000627 INF: Y Motor: Moved to 62.3950 after 1432 ms (table move)
17-03-17 22:01:01.218 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177940 mm (DAC = 38871)
17-03-17 22:01:01.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.228 -07 000000415 INF: FPGA: Recv ZSGSRD 36992
17-03-17 22:01:01.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:01:01.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.228 -07 000000576 INF: FPGA: Recv ZSGSRD 36988
17-03-17 22:01:01.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.238 -07 000000415 INF: FPGA: Recv ZSGSRD 36991
17-03-17 22:01:01.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36995
17-03-17 22:01:01.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.258 -07 000000415 INF: FPGA: Recv ZSGSRD 36985
17-03-17 22:01:01.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.268 -07 000000502 INF: FPGA: Recv ZSGSRD 36992
17-03-17 22:01:01.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.278 -07 000000608 INF: FPGA: Recv ZSGSRD 36989
17-03-17 22:01:01.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36984
17-03-17 22:01:01.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.298 -07 000000608 INF: FPGA: Recv ZSGSRD 36991
17-03-17 22:01:01.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:01.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36989
17-03-17 22:01:01.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.318 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:01.318 -07 000000458 INF: FPGA: Recv ZPIEZORD 33410
17-03-17 22:01:01.328 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:01.328 -07 000000626 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -7.9 V.
17-03-17 22:01:01.328 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36990 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36990 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36984 (-177.0 uncal um), Max = 36995 (-177.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:01:01.328 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36990, posNoise = 5, negNoise = 6
17-03-17 22:01:01.328 -07 000000626 INF: Z Motor: After move to -0.177940, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:01.328 -07 000000626 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:01:01.328 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:01.378 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:01:01.378 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:01.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:01.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:01.378 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:01.378 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:01.378 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:01.378 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:01.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:01.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:01.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:01.388 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:01.388 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:01:01.398 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:01:01.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:01.408 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.990831,
17-03-17 22:01:01.448 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:01.648 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:01.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:01.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:01.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-17 22:01:01.688 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:01.688 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:01.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 274 ms to get response, and 290 ms overall
17-03-17 22:01:01.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:01:01.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:01.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:01.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:01:01.788 -07 000000415 INF: Autofocus start
17-03-17 22:01:01.788 -07 000000415 INF: MeasureProfile start
17-03-17 22:01:01.788 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:01.788 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:01.798 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:01.798 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:01.798 -07 000000415 INF: MeasureProfile done
17-03-17 22:01:01.798 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:01:01.798 -07 000000415 INF: Autofocus finished
17-03-17 22:01:01.928 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:01.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:01.998 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:01.998 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:01.998 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177954959134873. ----------
17-03-17 22:01:01.998 -07 000000610 INF: Cycle	58	Tile	4	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:02.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37386, sync = True, waitForSettling = True)
17-03-17 22:01:02.008 -07 000000610 INF: Z Motor: Moving to -0.171142 mm, started at -0.177955 mm, distance = 6.81 um
17-03-17 22:01:02.008 -07 000000610 INF: FPGA: Xmit ZDACW 37386\n [Z Motor]
17-03-17 22:01:02.008 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:01:02.018 -07 000000610 INF: FPGA: 'ZDACW 37386' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:02.018 -07 000000458 INF: FPGA: Recv ZDACR 37386
17-03-17 22:01:02.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35933
17-03-17 22:01:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:02.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35933
17-03-17 22:01:02.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.198 -07 000000569 INF: FPGA: Recv ZSGSRD 35928
17-03-17 22:01:02.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.208 -07 000000627 INF: FPGA: Recv ZSGSRD 35930
17-03-17 22:01:02.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.218 -07 000000569 INF: FPGA: Recv ZSGSRD 35932
17-03-17 22:01:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35931
17-03-17 22:01:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.238 -07 000000576 INF: FPGA: Recv ZSGSRD 35932
17-03-17 22:01:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.248 -07 000000458 INF: FPGA: Recv ZSGSRD 35938
17-03-17 22:01:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.258 -07 000000458 INF: FPGA: Recv ZSGSRD 35930
17-03-17 22:01:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:02.268 -07 000000458 INF: FPGA: Recv ZSGSRD 35930
17-03-17 22:01:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:02.278 -07 000000458 INF: FPGA: Recv ZPIEZORD 32033
17-03-17 22:01:02.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:02.288 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -8.6 V.
17-03-17 22:01:02.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35932 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35938 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:02.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35932, posNoise = 6, negNoise = 4
17-03-17 22:01:02.288 -07 000000610 INF: Z Motor: After move to -0.171142, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:02.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:01:02.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:02.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:02.288 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:02.288 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:02.288 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:02.288 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:02.288 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:02.288 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:02.298 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:02.298 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:02.298 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:02.298 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:02.298 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:02.298 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:02.298 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:02.298 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:02.308 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:01:02.308 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:01:02.308 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:01:02.308 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:01:02.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37563 150\n [Camera]
17-03-17 22:01:02.518 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:02.958 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:02.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:02.958 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:02.958 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:02.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:01:02.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:02.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:02.958 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:02.958 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:02.958 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:01:03.148 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37563 828
17-03-17 22:01:03.298 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:03.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:01:03.348 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:01:03.348 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:03.348 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:01:03.348 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:01:03.348 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:03.348 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:03.348 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:01:03.348 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:03.358 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:01:03.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:03.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:03.518 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:03.518 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:03.518 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:01:03.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:03.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:03.518 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:03.518 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:03.518 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 22:01:03.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:01:03.708 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:03.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37563 150' command took 2 ms to send, 1508 ms to get response, and 1515 ms overall
17-03-17 22:01:03.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:03.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.17115814268889. ------
17-03-17 22:01:03.838 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:03.838 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17773 mm
17-03-17 22:01:03.838 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:03.838 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:03.838 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38825, sync = True, waitForSettling = False)
17-03-17 22:01:03.838 -07 000000608 INF: Z Motor: Moving to -0.177729 mm, started at -0.171158 mm, distance = -6.57 um
17-03-17 22:01:03.838 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:01:03.838 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 22:01:03.848 -07 000000608 INF: FPGA: Xmit ZDACW 38825\n [Z Motor]
17-03-17 22:01:03.848 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:01:03.848 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:01:03.858 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:03.858 -07 000000608 INF: FPGA: 'ZDACW 38825' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:01:03.868 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:03.868 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-17 22:01:03.878 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:03.878 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 22:01:03.878 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:03.878 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:03.878 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:01:03.878 -07 000000576 INF: FPGA: Recv ZDACR 38825
17-03-17 22:01:03.888 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:03.888 -07 000000608 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:01:03.888 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:03.928 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 22:01:03.928 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:01:03.928 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:03.928 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 22:01:03.928 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 22:01:03.928 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:03.928 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:03.928 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:01:03.928 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:01:03.938 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:01:04.058 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:04.058 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 22:01:04.258 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:01:04.258 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:01:04.298 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:04.308 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:01:04.308 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:01:04.308 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:04.308 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:01:04.308 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 22:01:05.258 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:05.258 -07 000000627 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:01:05.268 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:05.268 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:05.288 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:05.288 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:05.288 -07 000000512 INF: Y Motor: Moved to 63.2236 after 1447 ms (table move)
17-03-17 22:01:05.288 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177729 mm (DAC = 38825)
17-03-17 22:01:05.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.298 -07 000000627 INF: FPGA: Recv ZSGSRD 36964
17-03-17 22:01:05.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:01:05.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.298 -07 000000501 INF: FPGA: Recv ZSGSRD 36960
17-03-17 22:01:05.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:05.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.308 -07 000000608 INF: FPGA: Recv ZSGSRD 36957
17-03-17 22:01:05.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.318 -07 000000501 INF: FPGA: Recv ZSGSRD 36954
17-03-17 22:01:05.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36969
17-03-17 22:01:05.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.338 -07 000000627 INF: FPGA: Recv ZSGSRD 36962
17-03-17 22:01:05.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.348 -07 000000608 INF: FPGA: Recv ZSGSRD 36953
17-03-17 22:01:05.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.358 -07 000000627 INF: FPGA: Recv ZSGSRD 36953
17-03-17 22:01:05.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36951
17-03-17 22:01:05.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:05.378 -07 000000415 INF: FPGA: Recv ZSGSRD 36955
17-03-17 22:01:05.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.388 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:05.388 -07 000000608 INF: FPGA: Recv ZPIEZORD 33395
17-03-17 22:01:05.398 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:05.398 -07 000000502 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -7.9 V.
17-03-17 22:01:05.398 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36958 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36956 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36951 (-176.8 uncal um), Max = 36969 (-176.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:01:05.398 -07 000000502 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36958, posNoise = 11, negNoise = 7
17-03-17 22:01:05.398 -07 000000502 INF: Z Motor: After move to -0.177729, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:05.398 -07 000000502 INF: Z Motor: Settle wait time = 1451 ms, measure time = 101 ms (allowed 150 ms), total time = 1552 ms
17-03-17 22:01:05.398 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:05.448 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:01:05.448 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:05.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:05.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:05.448 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:05.448 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:05.448 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:05.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:05.458 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:01:05.458 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:05.458 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:05.458 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:05.468 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:01:05.468 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:01:05.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:05.508 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:05.708 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:05.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:05.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:05.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:05.748 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:05.748 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:05.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:01:05.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:01:05.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:05.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:05.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:01:05.848 -07 000000415 INF: Autofocus start
17-03-17 22:01:05.848 -07 000000415 INF: MeasureProfile start
17-03-17 22:01:05.848 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:05.848 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:05.858 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:05.858 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:05.858 -07 000000415 INF: MeasureProfile done
17-03-17 22:01:05.868 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:01:05.868 -07 000000415 INF: Autofocus finished
17-03-17 22:01:06.058 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:06.058 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:06.058 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177749384346336. ----------
17-03-17 22:01:06.058 -07 000000610 INF: Cycle	58	Tile	5	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:06.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37340, sync = True, waitForSettling = True)
17-03-17 22:01:06.068 -07 000000610 INF: Z Motor: Moving to -0.170932 mm, started at -0.177749 mm, distance = 6.82 um
17-03-17 22:01:06.068 -07 000000610 INF: FPGA: Xmit ZDACW 37340\n [Z Motor]
17-03-17 22:01:06.068 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:01:06.078 -07 000000610 INF: FPGA: 'ZDACW 37340' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:06.078 -07 000000608 INF: FPGA: Recv ZDACR 37340
17-03-17 22:01:06.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:06.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.238 -07 000000415 INF: FPGA: Recv ZSGSRD 35897
17-03-17 22:01:06.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:06.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.248 -07 000000608 INF: FPGA: Recv ZSGSRD 35904
17-03-17 22:01:06.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.258 -07 000000415 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:01:06.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.268 -07 000000608 INF: FPGA: Recv ZSGSRD 35894
17-03-17 22:01:06.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35899
17-03-17 22:01:06.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.288 -07 000000608 INF: FPGA: Recv ZSGSRD 35897
17-03-17 22:01:06.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.298 -07 000000415 INF: FPGA: Recv ZSGSRD 35897
17-03-17 22:01:06.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.308 -07 000000576 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:01:06.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.318 -07 000000627 INF: FPGA: Recv ZSGSRD 35891
17-03-17 22:01:06.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:06.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35899
17-03-17 22:01:06.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:06.338 -07 000000576 INF: FPGA: Recv ZPIEZORD 31966
17-03-17 22:01:06.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:06.348 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.7 V.
17-03-17 22:01:06.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35898 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35898 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35891 (-170.0 uncal um), Max = 35904 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:01:06.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35898, posNoise = 6, negNoise = 7
17-03-17 22:01:06.348 -07 000000610 INF: Z Motor: After move to -0.170932, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:06.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:01:06.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:06.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:06.348 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:06.348 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:06.348 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:06.348 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:06.348 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:06.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:06.348 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:06.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:06.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:06.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:06.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:06.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:01:06.358 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:06.358 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:06.358 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:06.358 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:01:06.368 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:01:06.368 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:01:06.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37516 150\n [Camera]
17-03-17 22:01:06.568 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:06.778 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.994908,
17-03-17 22:01:06.928 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:06.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:07.008 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:07.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:07.008 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:07.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:07.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:07.018 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:07.018 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:07.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:01:07.018 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:07.018 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:01:07.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37516 828
17-03-17 22:01:07.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:07.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:01:07.398 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:01:07.398 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:07.398 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:07.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:01:07.408 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:01:07.408 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:07.408 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:07.408 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:01:07.408 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:01:07.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:07.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:07.568 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:07.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:07.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:07.568 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:07.568 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:01:07.568 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:07.568 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:07.568 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:01:07.758 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:01:07.758 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:07.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37516 150' command took 2 ms to send, 1384 ms to get response, and 1391 ms overall
17-03-17 22:01:07.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:07.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.17093971947607. ------
17-03-17 22:01:07.878 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17747 mm
17-03-17 22:01:07.878 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:07.878 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:01:07.878 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 22:01:07.888 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38768, sync = True, waitForSettling = False)
17-03-17 22:01:07.888 -07 000000576 INF: Z Motor: Moving to -0.177469 mm, started at -0.170940 mm, distance = -6.53 um
17-03-17 22:01:07.898 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:07.898 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:07.908 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:07.908 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:01:07.908 -07 000000478 INF: FPGA: Recv YRDPOS 129482
17-03-17 22:01:07.918 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:01:07.918 -07 000000501 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:07.918 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:07.918 -07 000000501 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:01:07.918 -07 000000576 INF: FPGA: Xmit ZDACW 38768\n [Z Motor]
17-03-17 22:01:07.918 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:01:07.928 -07 000000576 INF: FPGA: 'ZDACW 38768' command took 1 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 22:01:07.938 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:07.948 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:07.958 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:07.958 -07 000000478 INF: FPGA: Recv ZDACR 38768
17-03-17 22:01:07.968 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 22:01:07.968 -07 000000576 INF: Z Motor: MoveAbsStepped took 79 ms (did NOT wait for settling yet))
17-03-17 22:01:07.968 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:01:07.968 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:01:07.968 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:07.968 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:01:07.968 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:01:07.968 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:07.968 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:07.968 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:01:07.978 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:07.978 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:01:08.138 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:08.138 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:01:08.318 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:01:08.318 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 22:01:08.358 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:08.358 -07 000000576 INF: FPGA: Recv YRDPOS 131187
17-03-17 22:01:08.368 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:01:08.368 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:08.368 -07 000000501 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 22:01:08.368 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.839 mm, average velocity = 2.056 mm/sec
17-03-17 22:01:09.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:09.318 -07 000000429 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:01:09.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:09.328 -07 000000501 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:09.348 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:09.348 -07 000000501 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:01:09.348 -07 000000501 INF: Y Motor: Moved to 64.0566 after 1463 ms (table move)
17-03-17 22:01:09.348 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177469 mm (DAC = 38768)
17-03-17 22:01:09.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.348 -07 000000569 INF: FPGA: Recv ZSGSRD 36920
17-03-17 22:01:09.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:09.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.358 -07 000000501 INF: FPGA: Recv ZSGSRD 36912
17-03-17 22:01:09.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.368 -07 000000569 INF: FPGA: Recv ZSGSRD 36921
17-03-17 22:01:09.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.378 -07 000000429 INF: FPGA: Recv ZSGSRD 36906
17-03-17 22:01:09.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.388 -07 000000512 INF: FPGA: Recv ZSGSRD 36916
17-03-17 22:01:09.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.398 -07 000000429 INF: FPGA: Recv ZSGSRD 36920
17-03-17 22:01:09.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.408 -07 000000569 INF: FPGA: Recv ZSGSRD 36912
17-03-17 22:01:09.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.418 -07 000000429 INF: FPGA: Recv ZSGSRD 36921
17-03-17 22:01:09.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.428 -07 000000569 INF: FPGA: Recv ZSGSRD 36915
17-03-17 22:01:09.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:09.438 -07 000000608 INF: FPGA: Recv ZSGSRD 36913
17-03-17 22:01:09.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.448 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:09.448 -07 000000569 INF: FPGA: Recv ZPIEZORD 33350
17-03-17 22:01:09.458 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:09.458 -07 000000502 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.916 V. Piezo Error = -7.9 V.
17-03-17 22:01:09.458 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36916 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36916 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36906 (-176.5 uncal um), Max = 36921 (-176.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:01:09.458 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36916, posNoise = 5, negNoise = 10
17-03-17 22:01:09.458 -07 000000502 INF: Z Motor: After move to -0.177469, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:09.458 -07 000000502 INF: Z Motor: Settle wait time = 1465 ms, measure time = 105 ms (allowed 150 ms), total time = 1570 ms
17-03-17 22:01:09.458 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:09.508 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 22:01:09.508 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:09.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:09.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:09.508 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:09.508 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:09.508 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:09.508 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:09.518 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:09.518 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:09.518 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:09.518 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:09.518 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:01:09.518 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:01:09.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:09.568 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:09.768 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:09.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:09.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:09.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:09.808 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:09.808 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:09.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:01:09.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:01:09.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:09.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:09.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:01:09.908 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:09.908 -07 000000502 INF: Autofocus start
17-03-17 22:01:09.908 -07 000000502 INF: MeasureProfile start
17-03-17 22:01:09.908 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:09.918 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:09.918 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:09.918 -07 000000502 INF: MeasureProfile done
17-03-17 22:01:09.918 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:01:09.918 -07 000000502 INF: Autofocus finished
17-03-17 22:01:10.118 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:10.118 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:10.118 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177479567436382. ----------
17-03-17 22:01:10.118 -07 000000610 INF: Cycle	58	Tile	6	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:10.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37248, sync = True, waitForSettling = True)
17-03-17 22:01:10.128 -07 000000610 INF: Z Motor: Moving to -0.170510 mm, started at -0.177480 mm, distance = 6.97 um
17-03-17 22:01:10.128 -07 000000610 INF: FPGA: Xmit ZDACW 37248\n [Z Motor]
17-03-17 22:01:10.128 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:01:10.138 -07 000000610 INF: FPGA: 'ZDACW 37248' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:10.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:10.138 -07 000000501 INF: FPGA: Recv ZDACR 37248
17-03-17 22:01:10.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:10.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35841
17-03-17 22:01:10.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:10.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.308 -07 000000415 INF: FPGA: Recv ZSGSRD 35833
17-03-17 22:01:10.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35830
17-03-17 22:01:10.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.328 -07 000000429 INF: FPGA: Recv ZSGSRD 35831
17-03-17 22:01:10.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.338 -07 000000512 INF: FPGA: Recv ZSGSRD 35831
17-03-17 22:01:10.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.348 -07 000000501 INF: FPGA: Recv ZSGSRD 35835
17-03-17 22:01:10.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.358 -07 000000512 INF: FPGA: Recv ZSGSRD 35829
17-03-17 22:01:10.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.368 -07 000000501 INF: FPGA: Recv ZSGSRD 35834
17-03-17 22:01:10.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.378 -07 000000569 INF: FPGA: Recv ZSGSRD 35837
17-03-17 22:01:10.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:10.388 -07 000000512 INF: FPGA: Recv ZSGSRD 35826
17-03-17 22:01:10.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:10.398 -07 000000569 INF: FPGA: Recv ZPIEZORD 31892
17-03-17 22:01:10.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:10.408 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.7 V.
17-03-17 22:01:10.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35833 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35826 (-169.6 uncal um), Max = 35841 (-169.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:01:10.408 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35833, posNoise = 8, negNoise = 7
17-03-17 22:01:10.408 -07 000000610 INF: Z Motor: After move to -0.170510, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:10.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:01:10.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:10.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:10.408 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:10.408 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:10.408 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:10.408 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:10.408 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:10.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:10.408 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:10.408 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:10.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:01:10.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:10.418 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:10.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:10.418 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:01:10.418 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:10.428 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:10.428 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:10.428 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:01:10.428 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:01:10.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37424 150\n [Camera]
17-03-17 22:01:10.628 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:11.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:11.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:11.068 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:11.068 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:11.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:11.078 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:11.078 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:11.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:01:11.078 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:11.078 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:11.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37424 828
17-03-17 22:01:11.408 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:11.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:01:11.458 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:01:11.458 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:11.458 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:11.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:01:11.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:01:11.458 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:11.468 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:11.468 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:01:11.468 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:01:11.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:11.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:11.628 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:11.628 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:11.628 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:01:11.628 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:11.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:11.628 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:11.628 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:11.628 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:01:11.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:01:11.818 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:11.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37424 150' command took 2 ms to send, 1384 ms to get response, and 1392 ms overall
17-03-17 22:01:11.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:11.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170522145686855. ------
17-03-17 22:01:11.828 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:11.828 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17681 mm
17-03-17 22:01:11.828 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:11.828 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:11.828 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:01:11.828 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38625, sync = True, waitForSettling = False)
17-03-17 22:01:11.828 -07 000000502 INF: Z Motor: Moving to -0.176814 mm, started at -0.170522 mm, distance = -6.29 um
17-03-17 22:01:11.828 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 22:01:11.838 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:11.838 -07 000000502 INF: FPGA: Xmit ZDACW 38625\n [Z Motor]
17-03-17 22:01:11.838 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:01:11.848 -07 000000502 INF: FPGA: 'ZDACW 38625' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:01:11.848 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:11.848 -07 000000458 INF: FPGA: Recv YRDPOS 131188
17-03-17 22:01:11.858 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:01:11.858 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:11.858 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:11.858 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:11.858 -07 000000576 INF: Y Motor: Moving 1338 steps-13
17-03-17 22:01:11.868 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:11.868 -07 000000512 INF: FPGA: Recv ZDACR 38625
17-03-17 22:01:11.878 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:11.878 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:11.878 -07 000000502 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:01:11.928 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:11.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:12.018 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:01:12.018 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:01:12.018 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:12.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:01:12.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:01:12.018 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:12.028 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:12.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:01:12.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:01:12.028 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:01:12.058 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:12.058 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 22:01:12.138 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.973092,
17-03-17 22:01:12.248 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 22:01:12.258 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 22:01:12.288 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:12.298 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:01:12.298 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:12.298 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:12.298 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:01:12.298 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.836 mm, average velocity = 2.095 mm/sec
17-03-17 22:01:13.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:13.248 -07 000000512 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:01:13.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:13.258 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:13.278 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:13.278 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:13.278 -07 000000576 INF: Y Motor: Moved to 64.8784 after 1450 ms (table move)
17-03-17 22:01:13.278 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176814 mm (DAC = 38625)
17-03-17 22:01:13.278 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36817
17-03-17 22:01:13.288 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:01:13.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36814
17-03-17 22:01:13.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:01:13.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.318 -07 000000512 INF: FPGA: Recv ZSGSRD 36814
17-03-17 22:01:13.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:13.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.328 -07 000000458 INF: FPGA: Recv ZSGSRD 36810
17-03-17 22:01:13.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:13.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36816
17-03-17 22:01:13.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:13.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.368 -07 000000482 INF: FPGA: Recv ZSGSRD 36817
17-03-17 22:01:13.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:13.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.388 -07 000000458 INF: FPGA: Recv ZSGSRD 36816
17-03-17 22:01:13.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:13.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.398 -07 000000458 INF: FPGA: Recv ZSGSRD 36812
17-03-17 22:01:13.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:13.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.408 -07 000000576 INF: FPGA: Recv ZSGSRD 36809
17-03-17 22:01:13.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:13.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:13.418 -07 000000576 INF: FPGA: Recv ZSGSRD 36809
17-03-17 22:01:13.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:13.428 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:13.428 -07 000000501 INF: FPGA: Recv ZPIEZORD 33196
17-03-17 22:01:13.438 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:13.438 -07 000000608 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.894 V. Piezo Error = -8.0 V.
17-03-17 22:01:13.438 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36813 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36814 (-175.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36809 (-175.9 uncal um), Max = 36817 (-176.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:13.438 -07 000000608 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36813, posNoise = 4, negNoise = 4
17-03-17 22:01:13.438 -07 000000608 INF: Z Motor: After move to -0.176814, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:13.438 -07 000000608 INF: Z Motor: Settle wait time = 1453 ms, measure time = 152 ms (allowed 150 ms), total time = 1605 ms
17-03-17 22:01:13.438 -07 000000608 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 22:01:13.438 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:01:13.438 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:13.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:13.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:13.438 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:13.438 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:13.438 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:13.438 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:13.438 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:13.438 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:13.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:13.448 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:13.458 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:01:13.458 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:01:13.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:13.508 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:13.708 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:13.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:13.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:13.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:01:13.748 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:13.748 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:13.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 22:01:13.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:01:13.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:13.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:13.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:01:13.848 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:13.848 -07 000000569 INF: Autofocus start
17-03-17 22:01:13.848 -07 000000569 INF: MeasureProfile start
17-03-17 22:01:13.848 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:13.858 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:13.858 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:13.858 -07 000000569 INF: MeasureProfile done
17-03-17 22:01:13.858 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:01:13.858 -07 000000569 INF: Autofocus finished
17-03-17 22:01:14.058 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:14.058 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:14.058 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176817873585781. ----------
17-03-17 22:01:14.058 -07 000000610 INF: Cycle	58	Tile	7	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:14.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37140, sync = True, waitForSettling = True)
17-03-17 22:01:14.068 -07 000000610 INF: Z Motor: Moving to -0.170016 mm, started at -0.176818 mm, distance = 6.80 um
17-03-17 22:01:14.068 -07 000000610 INF: FPGA: Xmit ZDACW 37140\n [Z Motor]
17-03-17 22:01:14.068 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:01:14.078 -07 000000610 INF: FPGA: 'ZDACW 37140' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:14.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:14.078 -07 000000576 INF: FPGA: Recv ZDACR 37140
17-03-17 22:01:14.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.238 -07 000000576 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:01:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35752
17-03-17 22:01:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.258 -07 000000501 INF: FPGA: Recv ZSGSRD 35755
17-03-17 22:01:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.268 -07 000000501 INF: FPGA: Recv ZSGSRD 35758
17-03-17 22:01:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.278 -07 000000501 INF: FPGA: Recv ZSGSRD 35752
17-03-17 22:01:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:01:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35760
17-03-17 22:01:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.308 -07 000000501 INF: FPGA: Recv ZSGSRD 35755
17-03-17 22:01:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35756
17-03-17 22:01:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:14.328 -07 000000569 INF: FPGA: Recv ZSGSRD 35748
17-03-17 22:01:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:14.338 -07 000000626 INF: FPGA: Recv ZPIEZORD 31808
17-03-17 22:01:14.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:14.348 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -8.7 V.
17-03-17 22:01:14.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35755 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35756 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35748 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:01:14.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35755, posNoise = 5, negNoise = 7
17-03-17 22:01:14.348 -07 000000610 INF: Z Motor: After move to -0.170016, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:14.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:01:14.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:14.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:14.348 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:14.348 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:14.348 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:14.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:14.348 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:14.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:14.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:01:14.348 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:14.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:14.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:14.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:14.358 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:14.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:14.358 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:14.368 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:14.368 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:14.368 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:14.368 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:01:14.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37316 150\n [Camera]
17-03-17 22:01:14.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:15.008 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:15.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:15.018 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:15.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:15.018 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:15.018 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:15.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:01:15.018 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:15.018 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:15.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:01:15.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37316 828
17-03-17 22:01:15.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:15.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:01:15.398 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:01:15.398 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:15.398 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:01:15.398 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:01:15.398 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:15.398 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:15.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:15.408 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:01:15.408 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:01:15.568 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:15.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:15.568 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:15.568 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:15.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:01:15.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:15.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:15.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:15.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:15.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:01:15.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:15.758 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:15.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37316 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-17 22:01:15.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:15.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170021057139798. ------
17-03-17 22:01:15.768 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:15.888 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17652 mm
17-03-17 22:01:15.888 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:15.888 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:01:15.888 -07 000000512 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 22:01:15.888 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:15.888 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38562, sync = True, waitForSettling = False)
17-03-17 22:01:15.888 -07 000000482 INF: Z Motor: Moving to -0.176526 mm, started at -0.170021 mm, distance = -6.50 um
17-03-17 22:01:15.888 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:15.888 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 119 ms to send, 5 ms to get response, and 125 ms overall
17-03-17 22:01:15.888 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-17 22:01:15.898 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:15.898 -07 000000512 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:15.898 -07 000000512 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:15.898 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:01:15.898 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:15.908 -07 000000482 INF: FPGA: Xmit ZDACW 38562\n [Z Motor]
17-03-17 22:01:15.908 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:01:15.918 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:15.918 -07 000000482 INF: FPGA: 'ZDACW 38562' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:01:15.928 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:15.928 -07 000000502 INF: FPGA: Recv ZDACR 38562
17-03-17 22:01:15.938 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:15.938 -07 000000482 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:01:15.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:01:15.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:01:15.968 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:15.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:01:15.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:01:15.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:15.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:15.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:01:15.978 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:01:15.978 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:01:16.098 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:16.098 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 208 ms overall
17-03-17 22:01:16.288 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:01:16.288 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:01:16.328 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:16.328 -07 000000569 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:01:16.338 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:16.338 -07 000000512 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:16.338 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:01:16.338 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 22:01:16.928 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:16.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:17.288 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:17.288 -07 000000626 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:01:17.298 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.298 -07 000000512 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:17.318 -07 000000512 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:17.318 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:17.318 -07 000000512 INF: Y Motor: Moved to 65.7134 after 1436 ms (table move)
17-03-17 22:01:17.328 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176526 mm (DAC = 38562)
17-03-17 22:01:17.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36770
17-03-17 22:01:17.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:17.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.338 -07 000000502 INF: FPGA: Recv ZSGSRD 36770
17-03-17 22:01:17.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.348 -07 000000501 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:01:17.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.358 -07 000000502 INF: FPGA: Recv ZSGSRD 36767
17-03-17 22:01:17.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.368 -07 000000569 INF: FPGA: Recv ZSGSRD 36770
17-03-17 22:01:17.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.378 -07 000000576 INF: FPGA: Recv ZSGSRD 36761
17-03-17 22:01:17.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.388 -07 000000569 INF: FPGA: Recv ZSGSRD 36769
17-03-17 22:01:17.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:01:17.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.408 -07 000000512 INF: FPGA: Recv ZSGSRD 36768
17-03-17 22:01:17.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:17.418 -07 000000576 INF: FPGA: Recv ZSGSRD 36770
17-03-17 22:01:17.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.428 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:17.428 -07 000000512 INF: FPGA: Recv ZPIEZORD 33155
17-03-17 22:01:17.438 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:17.438 -07 000000608 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.0 V.
17-03-17 22:01:17.438 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36768 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36768 (-175.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36761 (-175.6 uncal um), Max = 36770 (-175.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:01:17.438 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36768, posNoise = 2, negNoise = 7
17-03-17 22:01:17.438 -07 000000608 INF: Z Motor: After move to -0.176526, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:17.438 -07 000000608 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:01:17.438 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:17.488 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:01:17.488 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:17.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:17.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:17.488 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:17.488 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:17.488 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:17.488 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:17.488 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:17.488 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:17.498 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:17.498 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:17.498 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.983999,
17-03-17 22:01:17.498 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:01:17.498 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:01:17.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:17.568 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:17.768 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:17.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:17.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:17.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:17.808 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:17.808 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:17.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 301 ms overall
17-03-17 22:01:17.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:01:17.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:17.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:17.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:01:17.908 -07 000000608 INF: Autofocus start
17-03-17 22:01:17.908 -07 000000608 INF: MeasureProfile start
17-03-17 22:01:17.908 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:17.908 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:17.918 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:17.918 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:17.918 -07 000000608 INF: MeasureProfile done
17-03-17 22:01:17.918 -07 000000608 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:01:17.918 -07 000000608 INF: Autofocus finished
17-03-17 22:01:18.118 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:18.118 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:18.118 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176528784039402. ----------
17-03-17 22:01:18.118 -07 000000610 INF: Cycle	58	Tile	8	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:18.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37059, sync = True, waitForSettling = True)
17-03-17 22:01:18.128 -07 000000610 INF: Z Motor: Moving to -0.169645 mm, started at -0.176529 mm, distance = 6.88 um
17-03-17 22:01:18.128 -07 000000610 INF: FPGA: Xmit ZDACW 37059\n [Z Motor]
17-03-17 22:01:18.128 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:01:18.138 -07 000000610 INF: FPGA: 'ZDACW 37059' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:18.138 -07 000000608 INF: FPGA: Recv ZDACR 37059
17-03-17 22:01:18.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35699
17-03-17 22:01:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.308 -07 000000626 INF: FPGA: Recv ZSGSRD 35699
17-03-17 22:01:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.318 -07 000000482 INF: FPGA: Recv ZSGSRD 35694
17-03-17 22:01:18.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.328 -07 000000569 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:01:18.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.338 -07 000000608 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:01:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.348 -07 000000482 INF: FPGA: Recv ZSGSRD 35698
17-03-17 22:01:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.358 -07 000000569 INF: FPGA: Recv ZSGSRD 35696
17-03-17 22:01:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.368 -07 000000482 INF: FPGA: Recv ZSGSRD 35699
17-03-17 22:01:18.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.378 -07 000000608 INF: FPGA: Recv ZSGSRD 35703
17-03-17 22:01:18.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:18.398 -07 000000608 INF: FPGA: Recv ZSGSRD 35697
17-03-17 22:01:18.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:18.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:18.408 -07 000000501 INF: FPGA: Recv ZPIEZORD 31745
17-03-17 22:01:18.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:18.418 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -8.7 V.
17-03-17 22:01:18.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35698 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35698 (-168.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35694 (-168.8 uncal um), Max = 35703 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:18.418 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35698, posNoise = 5, negNoise = 4
17-03-17 22:01:18.418 -07 000000610 INF: Z Motor: After move to -0.169645, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:18.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 22:01:18.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:18.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:18.418 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:18.418 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:18.418 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:18.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:18.418 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:18.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:18.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:01:18.418 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:18.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:18.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:18.418 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:18.418 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:18.428 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:18.428 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:18.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:01:18.438 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:01:18.438 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:01:18.438 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:01:18.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37235 150\n [Camera]
17-03-17 22:01:18.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:19.078 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 636
17-03-17 22:01:19.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 636
17-03-17 22:01:19.088 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:19.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 636
17-03-17 22:01:19.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 636
17-03-17 22:01:19.088 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:19.088 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:19.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:19.098 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:19.098 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:01:19.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37235 828
17-03-17 22:01:19.428 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:19.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:01:19.468 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:01:19.468 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:19.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:01:19.468 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:01:19.468 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:19.478 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:19.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:01:19.478 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:19.488 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:01:19.638 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:19.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:19.638 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:19.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:19.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:19.638 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:19.648 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:19.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:01:19.648 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:19.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:01:19.828 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:01:19.828 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:19.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37235 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-17 22:01:19.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:19.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169654877047718. ------
17-03-17 22:01:19.838 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:19.838 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17612 mm
17-03-17 22:01:19.838 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:19.838 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:19.838 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:01:19.838 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 22:01:19.838 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38472, sync = True, waitForSettling = False)
17-03-17 22:01:19.838 -07 000000569 INF: Z Motor: Moving to -0.176114 mm, started at -0.169655 mm, distance = -6.46 um
17-03-17 22:01:19.848 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:19.848 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:19.848 -07 000000626 INF: FPGA: Recv YRDPOS 134581
17-03-17 22:01:19.858 -07 000000569 INF: FPGA: Xmit ZDACW 38472\n [Z Motor]
17-03-17 22:01:19.858 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:01:19.858 -07 000000501 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:19.858 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:19.858 -07 000000501 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:01:19.858 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:01:19.868 -07 000000569 INF: FPGA: 'ZDACW 38472' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:01:19.868 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:19.878 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:19.888 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:19.888 -07 000000626 INF: FPGA: Recv ZDACR 38472
17-03-17 22:01:19.898 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:19.898 -07 000000569 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:01:20.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:01:20.048 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:01:20.048 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:20.048 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:01:20.048 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:01:20.068 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:20.068 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:01:20.168 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 513 ms.
17-03-17 22:01:20.168 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 22:01:20.168 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:20.168 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:01:20.178 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms.
17-03-17 22:01:20.248 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:01:20.248 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:01:20.288 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:20.298 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:01:20.298 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:20.298 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:20.298 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:01:20.298 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:01:21.248 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:21.248 -07 000000541 INF: FPGA: Recv YRDPOS 136271
17-03-17 22:01:21.258 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:21.258 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:21.278 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:21.278 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:21.278 -07 000000501 INF: Y Motor: Moved to 66.5386 after 1441 ms (table move)
17-03-17 22:01:21.278 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176114 mm (DAC = 38472)
17-03-17 22:01:21.278 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36717
17-03-17 22:01:21.288 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:01:21.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36707
17-03-17 22:01:21.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:21.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36702
17-03-17 22:01:21.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36710
17-03-17 22:01:21.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.318 -07 000000627 INF: FPGA: Recv ZSGSRD 36708
17-03-17 22:01:21.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.328 -07 000000482 INF: FPGA: Recv ZSGSRD 36710
17-03-17 22:01:21.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.338 -07 000000626 INF: FPGA: Recv ZSGSRD 36698
17-03-17 22:01:21.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.348 -07 000000502 INF: FPGA: Recv ZSGSRD 36693
17-03-17 22:01:21.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.358 -07 000000627 INF: FPGA: Recv ZSGSRD 36701
17-03-17 22:01:21.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.368 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:21.368 -07 000000501 INF: FPGA: Recv ZSGSRD 36705
17-03-17 22:01:21.378 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.378 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:21.378 -07 000000608 INF: FPGA: Recv ZPIEZORD 33042
17-03-17 22:01:21.388 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:21.388 -07 000000512 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.1 V.
17-03-17 22:01:21.388 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36705 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36706 (-175.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 36693 (-175.2 uncal um), Max = 36717 (-175.3 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:01:21.388 -07 000000512 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36705, posNoise = 12, negNoise = 12
17-03-17 22:01:21.388 -07 000000512 INF: Z Motor: After move to -0.176114, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:21.388 -07 000000512 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:01:21.388 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:21.438 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 22:01:21.438 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:21.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:21.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:21.438 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:21.438 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:21.438 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:21.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:21.438 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:21.438 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:21.438 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:21.438 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:21.458 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:01:21.458 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:01:21.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:21.508 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:21.708 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:21.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:21.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:21.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:21.748 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:21.748 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:21.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:01:21.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:01:21.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:21.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:21.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:01:21.848 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:21.848 -07 000000501 INF: Autofocus start
17-03-17 22:01:21.848 -07 000000501 INF: MeasureProfile start
17-03-17 22:01:21.848 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:21.858 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:01:21.858 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:21.858 -07 000000501 INF: MeasureProfile done
17-03-17 22:01:21.858 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:01:21.858 -07 000000501 INF: Autofocus finished
17-03-17 22:01:21.928 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:21.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:22.058 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:22.058 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:22.058 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176124058674471. ----------
17-03-17 22:01:22.058 -07 000000610 INF: Cycle	58	Tile	9	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:22.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36952, sync = True, waitForSettling = True)
17-03-17 22:01:22.068 -07 000000610 INF: Z Motor: Moving to -0.169155 mm, started at -0.176124 mm, distance = 6.97 um
17-03-17 22:01:22.068 -07 000000610 INF: FPGA: Xmit ZDACW 36952\n [Z Motor]
17-03-17 22:01:22.068 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 22:01:22.078 -07 000000610 INF: FPGA: 'ZDACW 36952' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:22.078 -07 000000482 INF: FPGA: Recv ZDACR 36952
17-03-17 22:01:22.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.238 -07 000000482 INF: FPGA: Recv ZSGSRD 35624
17-03-17 22:01:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35620
17-03-17 22:01:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.258 -07 000000482 INF: FPGA: Recv ZSGSRD 35624
17-03-17 22:01:22.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.268 -07 000000482 INF: FPGA: Recv ZSGSRD 35626
17-03-17 22:01:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35623
17-03-17 22:01:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.288 -07 000000608 INF: FPGA: Recv ZSGSRD 35618
17-03-17 22:01:22.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35622
17-03-17 22:01:22.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.308 -07 000000502 INF: FPGA: Recv ZSGSRD 35622
17-03-17 22:01:22.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35624
17-03-17 22:01:22.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:22.328 -07 000000429 INF: FPGA: Recv ZSGSRD 35625
17-03-17 22:01:22.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:22.338 -07 000000429 INF: FPGA: Recv ZPIEZORD 31627
17-03-17 22:01:22.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:22.348 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -8.8 V.
17-03-17 22:01:22.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35623 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35624 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35618 (-168.3 uncal um), Max = 35626 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:01:22.348 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35623, posNoise = 3, negNoise = 5
17-03-17 22:01:22.348 -07 000000610 INF: Z Motor: After move to -0.169155, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:22.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:01:22.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:22.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:22.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:22.348 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:22.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:22.348 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:22.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:22.348 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:22.348 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:01:22.348 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:01:22.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:22.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:22.348 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:22.348 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:22.348 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:22.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:22.358 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:22.358 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:22.358 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:22.358 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:22.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37129 150\n [Camera]
17-03-17 22:01:22.568 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:22.868 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.014009,
17-03-17 22:01:23.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:23.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:23.008 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:23.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:23.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:23.018 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:23.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:23.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:01:23.018 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:23.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:23.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37129 828
17-03-17 22:01:23.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:23.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:01:23.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:01:23.388 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:23.388 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:01:23.388 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:01:23.398 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:23.398 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:23.398 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:01:23.398 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:23.408 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:01:23.568 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:23.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:23.568 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:23.568 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:23.568 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:01:23.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:23.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:23.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:23.568 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:23.568 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:01:23.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:01:23.758 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:23.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37129 150' command took 2 ms to send, 1383 ms to get response, and 1390 ms overall
17-03-17 22:01:23.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:23.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169173061137086. ------
17-03-17 22:01:23.758 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:23.758 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17588 mm
17-03-17 22:01:23.758 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:23.768 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:01:23.768 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 22:01:23.768 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:23.768 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38421, sync = True, waitForSettling = False)
17-03-17 22:01:23.768 -07 000000501 INF: Z Motor: Moving to -0.175880 mm, started at -0.169173 mm, distance = -6.71 um
17-03-17 22:01:23.768 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:23.768 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:23.768 -07 000000478 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:01:23.778 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:23.778 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:23.778 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:23.778 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:23.778 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:01:23.788 -07 000000501 INF: FPGA: Xmit ZDACW 38421\n [Z Motor]
17-03-17 22:01:23.788 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:01:23.798 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:23.798 -07 000000501 INF: FPGA: 'ZDACW 38421' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:23.808 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:23.808 -07 000000415 INF: FPGA: Recv ZDACR 38421
17-03-17 22:01:23.818 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:23.818 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:01:23.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:01:23.958 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:01:23.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:23.958 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:23.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:01:23.958 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:01:23.958 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:23.968 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:01:23.968 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:01:23.968 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:01:23.978 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:23.978 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:01:24.168 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:01:24.168 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:01:24.208 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:24.208 -07 000000458 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:01:24.218 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:24.218 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:24.218 -07 000000626 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 22:01:24.218 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 22:01:25.168 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:25.168 -07 000000429 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:01:25.178 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.178 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:25.198 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:25.198 -07 000000626 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:25.198 -07 000000626 INF: Y Motor: Moved to 67.3716 after 1434 ms (table move)
17-03-17 22:01:25.198 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175880 mm (DAC = 38421)
17-03-17 22:01:25.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.208 -07 000000502 INF: FPGA: Recv ZSGSRD 36675
17-03-17 22:01:25.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:25.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.208 -07 000000501 INF: FPGA: Recv ZSGSRD 36668
17-03-17 22:01:25.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:25.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36667
17-03-17 22:01:25.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36670
17-03-17 22:01:25.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.238 -07 000000501 INF: FPGA: Recv ZSGSRD 36668
17-03-17 22:01:25.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.248 -07 000000429 INF: FPGA: Recv ZSGSRD 36667
17-03-17 22:01:25.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.258 -07 000000478 INF: FPGA: Recv ZSGSRD 36662
17-03-17 22:01:25.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36664
17-03-17 22:01:25.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.278 -07 000000627 INF: FPGA: Recv ZSGSRD 36665
17-03-17 22:01:25.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:25.288 -07 000000478 INF: FPGA: Recv ZSGSRD 36672
17-03-17 22:01:25.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.298 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:25.298 -07 000000429 INF: FPGA: Recv ZPIEZORD 33008
17-03-17 22:01:25.308 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:25.308 -07 000000482 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.1 V.
17-03-17 22:01:25.308 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36668 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36668 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36662 (-175.0 uncal um), Max = 36675 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:01:25.308 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36668, posNoise = 7, negNoise = 6
17-03-17 22:01:25.308 -07 000000482 INF: Z Motor: After move to -0.175880, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:25.308 -07 000000482 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:01:25.308 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:25.358 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:01:25.358 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:25.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:25.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:25.358 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:25.358 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:25.358 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:25.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:25.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:25.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:25.368 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:25.368 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:25.378 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:01:25.378 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:01:25.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:25.428 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:25.618 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:25.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:25.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:25.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:01:25.658 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:25.668 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:25.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 22:01:25.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:01:25.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:25.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:25.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:01:25.768 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:25.768 -07 000000608 INF: Autofocus start
17-03-17 22:01:25.768 -07 000000608 INF: MeasureProfile start
17-03-17 22:01:25.768 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:25.778 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:01:25.778 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:25.788 -07 000000608 INF: MeasureProfile done
17-03-17 22:01:25.788 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:01:25.788 -07 000000608 INF: Autofocus finished
17-03-17 22:01:25.978 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:25.978 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:25.978 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175886362825226. ----------
17-03-17 22:01:25.978 -07 000000610 INF: Cycle	58	Tile	10	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:25.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36954, sync = True, waitForSettling = True)
17-03-17 22:01:25.988 -07 000000610 INF: Z Motor: Moving to -0.169165 mm, started at -0.175886 mm, distance = 6.72 um
17-03-17 22:01:25.988 -07 000000610 INF: FPGA: Xmit ZDACW 36954\n [Z Motor]
17-03-17 22:01:25.988 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:01:25.998 -07 000000610 INF: FPGA: 'ZDACW 36954' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:25.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:25.998 -07 000000429 INF: FPGA: Recv ZDACR 36954
17-03-17 22:01:26.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:26.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35620
17-03-17 22:01:26.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:26.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.168 -07 000000429 INF: FPGA: Recv ZSGSRD 35625
17-03-17 22:01:26.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35628
17-03-17 22:01:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35621
17-03-17 22:01:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.198 -07 000000541 INF: FPGA: Recv ZSGSRD 35622
17-03-17 22:01:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.208 -07 000000569 INF: FPGA: Recv ZSGSRD 35623
17-03-17 22:01:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35623
17-03-17 22:01:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.228 -07 000000429 INF: FPGA: Recv ZSGSRD 35628
17-03-17 22:01:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35624
17-03-17 22:01:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:26.248 -07 000000569 INF: FPGA: Recv ZSGSRD 35625
17-03-17 22:01:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:26.258 -07 000000458 INF: FPGA: Recv ZPIEZORD 31605
17-03-17 22:01:26.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:26.268 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -8.9 V.
17-03-17 22:01:26.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35624 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35624 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35620 (-168.3 uncal um), Max = 35628 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:26.268 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35624, posNoise = 4, negNoise = 4
17-03-17 22:01:26.268 -07 000000610 INF: Z Motor: After move to -0.169165, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:26.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:01:26.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:26.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:26.268 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:26.268 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:26.268 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:26.268 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:26.268 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:26.268 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:26.268 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:01:26.268 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:26.268 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:26.268 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:26.278 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:26.278 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:26.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:26.278 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:26.288 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:26.288 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:01:26.288 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:01:26.288 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:01:26.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37131 150\n [Camera]
17-03-17 22:01:26.488 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:01:26.928 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:26.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:26.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:26.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:26.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:26.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:26.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:01:26.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:26.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:26.938 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:26.938 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:26.938 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:01:27.128 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37131 828
17-03-17 22:01:27.278 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:27.308 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:01:27.308 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:01:27.308 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:27.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:01:27.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:01:27.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:27.318 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:01:27.318 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:01:27.318 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:27.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:01:27.498 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:01:27.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:01:27.498 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:27.498 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:27.498 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:01:27.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:01:27.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:01:27.498 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:27.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:27.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:01:27.688 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:01:27.688 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:27.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37131 150' command took 5 ms to send, 1382 ms to get response, and 1393 ms overall
17-03-17 22:01:27.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:27.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169179485349227. ------
17-03-17 22:01:27.688 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:27.688 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17551 mm
17-03-17 22:01:27.688 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:27.698 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:27.698 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:27.698 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:27.698 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38341, sync = True, waitForSettling = False)
17-03-17 22:01:27.698 -07 000000458 INF: Z Motor: Moving to -0.175514 mm, started at -0.169179 mm, distance = -6.33 um
17-03-17 22:01:27.698 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:01:27.698 -07 000000512 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 22:01:27.708 -07 000000458 INF: FPGA: Xmit ZDACW 38341\n [Z Motor]
17-03-17 22:01:27.708 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 22:01:27.828 -07 000000458 INF: FPGA: 'ZDACW 38341' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 22:01:27.828 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:27.828 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-17 22:01:27.838 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-17 22:01:27.838 -07 000000512 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:27.838 -07 000000512 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:27.838 -07 000000512 INF: Y Motor: Moving 1346 steps-23
17-03-17 22:01:27.838 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:27.838 -07 000000501 INF: FPGA: Recv ZDACR 38341
17-03-17 22:01:27.848 -07 000000458 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:27.848 -07 000000458 INF: Z Motor: MoveAbsStepped took 148 ms (did NOT wait for settling yet))
17-03-17 22:01:27.848 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:27.888 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:01:27.888 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:01:27.888 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:27.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:01:27.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:01:27.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:27.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:27.898 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:27.898 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:27.898 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:01:27.898 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:01:27.908 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:01:28.218 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 22:01:28.218 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:01:28.228 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.031682,
17-03-17 22:01:28.268 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:28.268 -07 000000569 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:01:28.278 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:28.278 -07 000000512 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:28.278 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 22:01:28.278 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.168 mm/sec
17-03-17 22:01:29.228 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:29.228 -07 000000458 INF: FPGA: Recv YRDPOS 139683
17-03-17 22:01:29.238 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:29.238 -07 000000512 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:29.258 -07 000000512 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:29.258 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:29.258 -07 000000512 INF: Y Motor: Moved to 68.2046 after 1562 ms (table move)
17-03-17 22:01:29.258 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175514 mm (DAC = 38341)
17-03-17 22:01:29.258 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.268 -07 000000482 INF: FPGA: Recv ZSGSRD 36610
17-03-17 22:01:29.268 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:01:29.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36616
17-03-17 22:01:29.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.278 -07 000000482 INF: FPGA: Recv ZSGSRD 36611
17-03-17 22:01:29.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36624
17-03-17 22:01:29.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.298 -07 000000458 INF: FPGA: Recv ZSGSRD 36609
17-03-17 22:01:29.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.308 -07 000000608 INF: FPGA: Recv ZSGSRD 36607
17-03-17 22:01:29.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36613
17-03-17 22:01:29.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36611
17-03-17 22:01:29.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.338 -07 000000569 INF: FPGA: Recv ZSGSRD 36614
17-03-17 22:01:29.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:29.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36611
17-03-17 22:01:29.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.358 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:29.358 -07 000000501 INF: FPGA: Recv ZPIEZORD 32936
17-03-17 22:01:29.368 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:29.368 -07 000000627 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.1 V.
17-03-17 22:01:29.368 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36613 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36611 (-174.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36607 (-174.6 uncal um), Max = 36624 (-174.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:01:29.368 -07 000000627 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36613, posNoise = 11, negNoise = 6
17-03-17 22:01:29.368 -07 000000627 INF: Z Motor: After move to -0.175514, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:29.368 -07 000000627 INF: Z Motor: Settle wait time = 1565 ms, measure time = 104 ms (allowed 150 ms), total time = 1669 ms
17-03-17 22:01:29.368 -07 000000627 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:29.418 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-17 22:01:29.418 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:29.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:29.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:29.418 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:29.418 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:29.418 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:29.418 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:29.418 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:01:29.418 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:29.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:29.428 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:29.438 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:01:29.438 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:01:29.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:29.498 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:29.698 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:29.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:29.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:29.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:29.738 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:29.738 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:29.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 299 ms overall
17-03-17 22:01:29.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:01:29.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:29.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:29.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:01:29.838 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:29.838 -07 000000626 INF: Autofocus start
17-03-17 22:01:29.838 -07 000000626 INF: MeasureProfile start
17-03-17 22:01:29.838 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:29.848 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:29.848 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:29.848 -07 000000626 INF: MeasureProfile done
17-03-17 22:01:29.848 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:01:29.848 -07 000000626 INF: Autofocus finished
17-03-17 22:01:30.048 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:30.048 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:30.048 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175533031157429. ----------
17-03-17 22:01:30.048 -07 000000610 INF: Cycle	58	Tile	11	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:30.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36892, sync = True, waitForSettling = True)
17-03-17 22:01:30.058 -07 000000610 INF: Z Motor: Moving to -0.168881 mm, started at -0.175533 mm, distance = 6.65 um
17-03-17 22:01:30.058 -07 000000610 INF: FPGA: Xmit ZDACW 36892\n [Z Motor]
17-03-17 22:01:30.058 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:01:30.068 -07 000000610 INF: FPGA: 'ZDACW 36892' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:30.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:30.068 -07 000000501 INF: FPGA: Recv ZDACR 36892
17-03-17 22:01:30.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.228 -07 000000429 INF: FPGA: Recv ZSGSRD 35579
17-03-17 22:01:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35578
17-03-17 22:01:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35574
17-03-17 22:01:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.258 -07 000000501 INF: FPGA: Recv ZSGSRD 35582
17-03-17 22:01:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.268 -07 000000429 INF: FPGA: Recv ZSGSRD 35572
17-03-17 22:01:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.278 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-17 22:01:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.288 -07 000000429 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:01:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.298 -07 000000501 INF: FPGA: Recv ZSGSRD 35580
17-03-17 22:01:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.308 -07 000000429 INF: FPGA: Recv ZSGSRD 35581
17-03-17 22:01:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:30.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-17 22:01:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:30.328 -07 000000482 INF: FPGA: Recv ZPIEZORD 31562
17-03-17 22:01:30.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:30.338 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -8.9 V.
17-03-17 22:01:30.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35578 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35578 (-168.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35572 (-168.0 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:01:30.338 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35578, posNoise = 10, negNoise = 6
17-03-17 22:01:30.338 -07 000000610 INF: Z Motor: After move to -0.168881, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:30.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:01:30.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:30.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:30.338 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:30.338 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:30.338 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:30.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:30.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:30.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:30.338 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:01:30.338 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:30.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:30.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:30.348 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:30.348 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:30.348 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:01:30.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:30.358 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:30.358 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:01:30.358 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:30.358 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:01:30.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37068 150\n [Camera]
17-03-17 22:01:30.558 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:30.998 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:30.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:30.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:31.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:31.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:31.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:31.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:31.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:31.018 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:31.018 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:01:31.198 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37068 829
17-03-17 22:01:31.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:31.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:01:31.388 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:01:31.388 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:31.388 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:31.388 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:01:31.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:01:31.388 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:01:31.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:31.398 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:31.398 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:01:31.558 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:31.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:31.558 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:31.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:31.558 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:31.558 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:31.568 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:31.568 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:01:31.568 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:31.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:01:31.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:31.748 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:31.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37068 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-17 22:01:31.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:31.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168883971590706. ------
17-03-17 22:01:31.758 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:31.758 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17548 mm
17-03-17 22:01:31.758 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:31.758 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:31.758 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:01:31.758 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 22:01:31.758 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38333, sync = True, waitForSettling = False)
17-03-17 22:01:31.758 -07 000000626 INF: Z Motor: Moving to -0.175477 mm, started at -0.168884 mm, distance = -6.59 um
17-03-17 22:01:31.768 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:31.768 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:31.768 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:01:31.778 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:01:31.778 -07 000000482 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:31.778 -07 000000626 INF: FPGA: Xmit ZDACW 38333\n [Z Motor]
17-03-17 22:01:31.888 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:31.888 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:01:31.888 -07 000000626 INF: FPGA: 'ZDACW 38333' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 22:01:31.898 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:31.898 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:31.898 -07 000000482 INF: Y Motor: Moving 1340 steps-16
17-03-17 22:01:31.898 -07 000000478 INF: FPGA: Recv ZDACR 38333
17-03-17 22:01:31.908 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:31.908 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:31.908 -07 000000626 INF: Z Motor: MoveAbsStepped took 145 ms (did NOT wait for settling yet))
17-03-17 22:01:31.928 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:31.928 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:31.958 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:01:31.958 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:01:31.958 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:31.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:01:31.968 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:01:31.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:31.968 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:31.968 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:31.968 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:01:31.978 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:01:32.098 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:32.098 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 331 ms overall
17-03-17 22:01:32.288 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:01:32.288 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-17 22:01:32.318 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:32.328 -07 000000459 INF: FPGA: Recv YRDPOS 141366
17-03-17 22:01:32.328 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:32.328 -07 000000482 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:32.328 -07 000000482 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:01:32.328 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 22:01:33.278 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:33.278 -07 000000608 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:01:33.288 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:33.288 -07 000000482 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:33.308 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:33.308 -07 000000482 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:01:33.308 -07 000000482 INF: Y Motor: Moved to 69.0269 after 1550 ms (table move)
17-03-17 22:01:33.308 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175477 mm (DAC = 38333)
17-03-17 22:01:33.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.318 -07 000000458 INF: FPGA: Recv ZSGSRD 36611
17-03-17 22:01:33.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:33.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.318 -07 000000608 INF: FPGA: Recv ZSGSRD 36608
17-03-17 22:01:33.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:33.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36609
17-03-17 22:01:33.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.338 -07 000000576 INF: FPGA: Recv ZSGSRD 36604
17-03-17 22:01:33.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.348 -07 000000626 INF: FPGA: Recv ZSGSRD 36605
17-03-17 22:01:33.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.358 -07 000000512 INF: FPGA: Recv ZSGSRD 36606
17-03-17 22:01:33.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.368 -07 000000482 INF: FPGA: Recv ZSGSRD 36604
17-03-17 22:01:33.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.378 -07 000000501 INF: FPGA: Recv ZSGSRD 36601
17-03-17 22:01:33.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.388 -07 000000608 INF: FPGA: Recv ZSGSRD 36606
17-03-17 22:01:33.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:33.398 -07 000000482 INF: FPGA: Recv ZSGSRD 36605
17-03-17 22:01:33.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.408 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:33.408 -07 000000626 INF: FPGA: Recv ZPIEZORD 32969
17-03-17 22:01:33.418 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:33.418 -07 000000627 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.1 V.
17-03-17 22:01:33.418 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36606 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36606 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36601 (-174.6 uncal um), Max = 36611 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:01:33.418 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36606, posNoise = 5, negNoise = 5
17-03-17 22:01:33.418 -07 000000627 INF: Z Motor: After move to -0.175477, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:33.418 -07 000000627 INF: Z Motor: Settle wait time = 1553 ms, measure time = 103 ms (allowed 150 ms), total time = 1656 ms
17-03-17 22:01:33.418 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:33.468 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 22:01:33.468 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:33.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:33.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:33.468 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:33.468 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:33.468 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:33.468 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:33.468 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:01:33.468 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:33.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:33.478 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:33.488 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:01:33.488 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:01:33.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:33.538 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:33.588 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.009895,
17-03-17 22:01:33.738 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:33.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:33.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:33.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:33.778 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:33.778 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:33.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:01:33.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:01:33.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:33.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:33.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:01:33.878 -07 000000608 INF: Autofocus start
17-03-17 22:01:33.878 -07 000000608 INF: MeasureProfile start
17-03-17 22:01:33.878 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:33.888 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:33.888 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 22:01:33.888 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:33.898 -07 000000608 INF: MeasureProfile done
17-03-17 22:01:33.898 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:01:33.898 -07 000000608 INF: Autofocus finished
17-03-17 22:01:34.088 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:34.088 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:01:34.088 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175488061672437. ----------
17-03-17 22:01:34.088 -07 000000610 INF: Cycle	58	Tile	12	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:34.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36848, sync = True, waitForSettling = True)
17-03-17 22:01:34.098 -07 000000610 INF: Z Motor: Moving to -0.168679 mm, started at -0.175488 mm, distance = 6.81 um
17-03-17 22:01:34.098 -07 000000610 INF: FPGA: Xmit ZDACW 36848\n [Z Motor]
17-03-17 22:01:34.098 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:01:34.108 -07 000000610 INF: FPGA: 'ZDACW 36848' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:34.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:34.108 -07 000000541 INF: FPGA: Recv ZDACR 36848
17-03-17 22:01:34.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35551
17-03-17 22:01:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.278 -07 000000541 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:01:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.288 -07 000000541 INF: FPGA: Recv ZSGSRD 35549
17-03-17 22:01:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.298 -07 000000541 INF: FPGA: Recv ZSGSRD 35546
17-03-17 22:01:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35554
17-03-17 22:01:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.318 -07 000000541 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:01:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.328 -07 000000478 INF: FPGA: Recv ZSGSRD 35547
17-03-17 22:01:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.338 -07 000000569 INF: FPGA: Recv ZSGSRD 35552
17-03-17 22:01:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35544
17-03-17 22:01:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:34.358 -07 000000608 INF: FPGA: Recv ZSGSRD 35549
17-03-17 22:01:34.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:34.368 -07 000000569 INF: FPGA: Recv ZPIEZORD 31535
17-03-17 22:01:34.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:34.378 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -8.9 V.
17-03-17 22:01:34.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35548 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35548 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35544 (-167.8 uncal um), Max = 35554 (-167.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:34.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35548, posNoise = 6, negNoise = 4
17-03-17 22:01:34.378 -07 000000610 INF: Z Motor: After move to -0.168679, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:34.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:01:34.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:34.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:34.378 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:34.378 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:34.378 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:34.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:34.378 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:34.378 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:34.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:34.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:34.378 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:34.378 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:34.388 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:34.388 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:34.388 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:34.388 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:34.398 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:34.398 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:01:34.398 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:34.398 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:01:34.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 37025 150\n [Camera]
17-03-17 22:01:34.598 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:35.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:35.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:35.038 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:35.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:35.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:35.048 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:35.048 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:35.048 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:01:35.048 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:35.048 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:35.228 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37025 828
17-03-17 22:01:35.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:35.418 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:01:35.418 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:01:35.418 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:35.418 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:01:35.418 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:01:35.418 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:35.418 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:35.418 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:01:35.428 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:35.428 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:01:35.598 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:35.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:35.598 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:35.598 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:35.598 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:01:35.598 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:35.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:35.598 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:35.598 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:35.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:01:35.788 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:35.788 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:35.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 37025 150' command took 2 ms to send, 1384 ms to get response, and 1391 ms overall
17-03-17 22:01:35.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:35.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168691245226453. ------
17-03-17 22:01:35.788 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:35.788 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17502 mm
17-03-17 22:01:35.788 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:35.798 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:01:35.798 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:35.798 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:01:35.798 -07 000000459 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 22:01:35.798 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38234, sync = True, waitForSettling = False)
17-03-17 22:01:35.798 -07 000000482 INF: Z Motor: Moving to -0.175024 mm, started at -0.168691 mm, distance = -6.33 um
17-03-17 22:01:35.798 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:35.798 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-17 22:01:35.808 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:35.808 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:35.808 -07 000000459 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:35.808 -07 000000459 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:35.808 -07 000000459 INF: Y Motor: Moving 1353 steps-33
17-03-17 22:01:35.818 -07 000000482 INF: FPGA: Xmit ZDACW 38234\n [Z Motor]
17-03-17 22:01:35.818 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:01:35.828 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:35.828 -07 000000482 INF: FPGA: 'ZDACW 38234' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:01:35.838 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:35.838 -07 000000478 INF: FPGA: Recv ZDACR 38234
17-03-17 22:01:35.848 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:35.848 -07 000000482 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 22:01:35.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:01:35.978 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:01:35.978 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:35.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:35.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:01:35.988 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:01:35.988 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:35.988 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:01:35.988 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:01:35.988 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:01:36.008 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:36.008 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 22:01:36.198 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:01:36.198 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:01:36.238 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:36.238 -07 000000627 INF: FPGA: Recv YRDPOS 143078
17-03-17 22:01:36.248 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:36.248 -07 000000459 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:36.248 -07 000000459 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 22:01:36.248 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-17 22:01:36.928 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:37.198 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:37.198 -07 000000547 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:01:37.208 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:37.208 -07 000000459 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:37.228 -07 000000459 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:37.228 -07 000000459 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:01:37.228 -07 000000459 INF: Y Motor: Moved to 69.8628 after 1433 ms (table move)
17-03-17 22:01:37.228 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175024 mm (DAC = 38234)
17-03-17 22:01:37.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.238 -07 000000569 INF: FPGA: Recv ZSGSRD 36541
17-03-17 22:01:37.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:01:37.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.238 -07 000000547 INF: FPGA: Recv ZSGSRD 36534
17-03-17 22:01:37.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:37.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36540
17-03-17 22:01:37.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36540
17-03-17 22:01:37.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36534
17-03-17 22:01:37.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.278 -07 000000547 INF: FPGA: Recv ZSGSRD 36538
17-03-17 22:01:37.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.288 -07 000000541 INF: FPGA: Recv ZSGSRD 36534
17-03-17 22:01:37.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.298 -07 000000569 INF: FPGA: Recv ZSGSRD 36532
17-03-17 22:01:37.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:37.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.308 -07 000000541 INF: FPGA: Recv ZSGSRD 36534
17-03-17 22:01:37.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:37.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36534
17-03-17 22:01:37.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:37.328 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:37.328 -07 000000424 INF: FPGA: Recv ZPIEZORD 32845
17-03-17 22:01:37.338 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:37.338 -07 000000626 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.2 V.
17-03-17 22:01:37.338 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36536 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36534 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36532 (-174.1 uncal um), Max = 36541 (-174.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:37.338 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36536, posNoise = 5, negNoise = 4
17-03-17 22:01:37.338 -07 000000626 INF: Z Motor: After move to -0.175024, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:37.338 -07 000000626 INF: Z Motor: Settle wait time = 1435 ms, measure time = 102 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:01:37.338 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:37.388 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 22:01:37.388 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:37.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:37.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:37.388 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:37.388 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:37.388 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:37.388 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:37.388 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:37.388 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:37.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:37.398 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:37.408 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:01:37.408 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:01:37.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:37.458 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:37.648 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:37.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:37.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:37.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:01:37.698 -07 000000547 INF: FPGA: Recv @CAMSNAP 282
17-03-17 22:01:37.698 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:37.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 22:01:37.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:01:37.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:37.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:37.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:01:37.798 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:37.798 -07 000000541 INF: Autofocus start
17-03-17 22:01:37.798 -07 000000541 INF: MeasureProfile start
17-03-17 22:01:37.798 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:37.808 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:37.808 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:37.808 -07 000000541 INF: MeasureProfile done
17-03-17 22:01:37.808 -07 000000541 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:01:37.808 -07 000000541 INF: Autofocus finished
17-03-17 22:01:38.008 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:38.008 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:01:38.008 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175038366822513. ----------
17-03-17 22:01:38.018 -07 000000610 INF: Cycle	58	Tile	13	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:38.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36731, sync = True, waitForSettling = True)
17-03-17 22:01:38.018 -07 000000610 INF: Z Motor: Moving to -0.168144 mm, started at -0.175038 mm, distance = 6.89 um
17-03-17 22:01:38.018 -07 000000610 INF: FPGA: Xmit ZDACW 36731\n [Z Motor]
17-03-17 22:01:38.018 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 22:01:38.028 -07 000000610 INF: FPGA: 'ZDACW 36731' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:38.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:38.028 -07 000000433 INF: FPGA: Recv ZDACR 36731
17-03-17 22:01:38.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.188 -07 000000547 INF: FPGA: Recv ZSGSRD 35466
17-03-17 22:01:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.198 -07 000000541 INF: FPGA: Recv ZSGSRD 35464
17-03-17 22:01:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.208 -07 000000478 INF: FPGA: Recv ZSGSRD 35464
17-03-17 22:01:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.218 -07 000000626 INF: FPGA: Recv ZSGSRD 35465
17-03-17 22:01:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35464
17-03-17 22:01:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35466
17-03-17 22:01:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35470
17-03-17 22:01:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35463
17-03-17 22:01:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.268 -07 000000547 INF: FPGA: Recv ZSGSRD 35468
17-03-17 22:01:38.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:38.278 -07 000000512 INF: FPGA: Recv ZSGSRD 35463
17-03-17 22:01:38.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:38.288 -07 000000478 INF: FPGA: Recv ZPIEZORD 31445
17-03-17 22:01:38.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:38.298 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -8.9 V.
17-03-17 22:01:38.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35465 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35463 (-167.3 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:01:38.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35465, posNoise = 5, negNoise = 2
17-03-17 22:01:38.298 -07 000000610 INF: Z Motor: After move to -0.168144, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:38.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:01:38.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:38.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:38.298 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:38.298 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:38.298 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:38.298 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:38.298 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:38.298 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:38.298 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:38.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:38.298 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:01:38.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:38.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:01:38.298 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:38.308 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:38.308 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:38.318 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:38.318 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:01:38.318 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:01:38.318 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:01:38.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36908 150\n [Camera]
17-03-17 22:01:38.518 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:38.948 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.007176,
17-03-17 22:01:38.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:38.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:38.958 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:38.958 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:38.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:01:38.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:38.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:38.968 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:38.968 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:38.968 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:01:39.158 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36908 828
17-03-17 22:01:39.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:39.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:01:39.338 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:01:39.338 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:39.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:01:39.338 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:01:39.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:39.348 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:01:39.348 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:01:39.348 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:01:39.358 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:01:39.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:39.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:39.518 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:39.518 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:39.518 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:01:39.518 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:39.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:39.518 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:39.518 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:39.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:01:39.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:39.708 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:39.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36908 150' command took 2 ms to send, 1385 ms to get response, and 1390 ms overall
17-03-17 22:01:39.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:39.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168158035618687. ------
17-03-17 22:01:39.718 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:39.718 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17476 mm
17-03-17 22:01:39.718 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:39.718 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:39.718 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:01:39.718 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 22:01:39.718 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38177, sync = True, waitForSettling = False)
17-03-17 22:01:39.718 -07 000000627 INF: Z Motor: Moving to -0.174763 mm, started at -0.168158 mm, distance = -6.61 um
17-03-17 22:01:39.728 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:39.728 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:39.728 -07 000000547 INF: FPGA: Recv YRDPOS 143079
17-03-17 22:01:39.738 -07 000000627 INF: FPGA: Xmit ZDACW 38177\n [Z Motor]
17-03-17 22:01:39.738 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 22:01:39.738 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:39.738 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:39.848 -07 000000626 INF: Y Motor: Moving 1344 steps-21
17-03-17 22:01:39.848 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:01:39.848 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:39.848 -07 000000627 INF: FPGA: 'ZDACW 38177' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 22:01:39.858 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:39.858 -07 000000478 INF: FPGA: Recv ZDACR 38177
17-03-17 22:01:39.868 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:01:39.868 -07 000000627 INF: Z Motor: MoveAbsStepped took 144 ms (did NOT wait for settling yet))
17-03-17 22:01:39.878 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:39.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:01:39.908 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:01:39.918 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:39.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:01:39.918 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:01:39.918 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:39.918 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:39.918 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:01:39.918 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:01:39.928 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:01:40.058 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:40.058 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 330 ms overall
17-03-17 22:01:40.248 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:01:40.248 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 399 ms overall
17-03-17 22:01:40.288 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:40.298 -07 000000424 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:01:40.298 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 22:01:40.298 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:40.298 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:01:40.298 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.100 mm/sec
17-03-17 22:01:41.248 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:41.248 -07 000000627 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:01:41.258 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:41.258 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:41.278 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:41.278 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:41.278 -07 000000626 INF: Y Motor: Moved to 70.6880 after 1560 ms (table move)
17-03-17 22:01:41.278 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174763 mm (DAC = 38177)
17-03-17 22:01:41.278 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.288 -07 000000482 INF: FPGA: Recv ZSGSRD 36495
17-03-17 22:01:41.288 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 22:01:41.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.288 -07 000000626 INF: FPGA: Recv ZSGSRD 36504
17-03-17 22:01:41.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:41.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36496
17-03-17 22:01:41.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.308 -07 000000626 INF: FPGA: Recv ZSGSRD 36489
17-03-17 22:01:41.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.318 -07 000000482 INF: FPGA: Recv ZSGSRD 36499
17-03-17 22:01:41.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.328 -07 000000482 INF: FPGA: Recv ZSGSRD 36499
17-03-17 22:01:41.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.338 -07 000000626 INF: FPGA: Recv ZSGSRD 36496
17-03-17 22:01:41.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.348 -07 000000482 INF: FPGA: Recv ZSGSRD 36487
17-03-17 22:01:41.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.358 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.358 -07 000000512 INF: FPGA: Recv ZSGSRD 36490
17-03-17 22:01:41.368 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:41.368 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:41.368 -07 000000512 INF: FPGA: Recv ZSGSRD 36501
17-03-17 22:01:41.378 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.378 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:41.378 -07 000000512 INF: FPGA: Recv ZPIEZORD 32813
17-03-17 22:01:41.388 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:41.388 -07 000000502 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.825 V. Piezo Error = -8.2 V.
17-03-17 22:01:41.388 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36496 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36496 (-173.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36487 (-173.8 uncal um), Max = 36504 (-173.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:01:41.388 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36496, posNoise = 8, negNoise = 9
17-03-17 22:01:41.388 -07 000000502 INF: Z Motor: After move to -0.174763, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:41.388 -07 000000502 INF: Z Motor: Settle wait time = 1563 ms, measure time = 102 ms (allowed 150 ms), total time = 1665 ms
17-03-17 22:01:41.388 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:41.438 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1718 ms
17-03-17 22:01:41.438 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:41.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:41.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:41.438 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:41.438 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:41.438 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:41.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:41.438 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:41.438 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:41.448 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:41.448 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:41.458 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:01:41.458 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:01:41.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:41.498 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:41.698 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:41.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:41.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:41.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:41.738 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:41.738 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:41.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:01:41.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:01:41.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:41.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:41.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 22:01:41.838 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:41.838 -07 000000627 INF: Autofocus start
17-03-17 22:01:41.838 -07 000000627 INF: MeasureProfile start
17-03-17 22:01:41.838 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:41.848 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:41.848 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:41.848 -07 000000627 INF: MeasureProfile done
17-03-17 22:01:41.848 -07 000000627 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:01:41.848 -07 000000627 INF: Autofocus finished
17-03-17 22:01:41.928 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:42.048 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:42.048 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:01:42.048 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174781398336843. ----------
17-03-17 22:01:42.048 -07 000000610 INF: Cycle	58	Tile	14	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:42.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36657, sync = True, waitForSettling = True)
17-03-17 22:01:42.058 -07 000000610 INF: Z Motor: Moving to -0.167805 mm, started at -0.174781 mm, distance = 6.98 um
17-03-17 22:01:42.058 -07 000000610 INF: FPGA: Xmit ZDACW 36657\n [Z Motor]
17-03-17 22:01:42.058 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:01:42.068 -07 000000610 INF: FPGA: 'ZDACW 36657' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:42.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:42.068 -07 000000502 INF: FPGA: Recv ZDACR 36657
17-03-17 22:01:42.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:42.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35411
17-03-17 22:01:42.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:42.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35408
17-03-17 22:01:42.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.248 -07 000000424 INF: FPGA: Recv ZSGSRD 35411
17-03-17 22:01:42.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.258 -07 000000433 INF: FPGA: Recv ZSGSRD 35414
17-03-17 22:01:42.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.268 -07 000000626 INF: FPGA: Recv ZSGSRD 35408
17-03-17 22:01:42.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35411
17-03-17 22:01:42.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35413
17-03-17 22:01:42.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.298 -07 000000547 INF: FPGA: Recv ZSGSRD 35415
17-03-17 22:01:42.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.308 -07 000000627 INF: FPGA: Recv ZSGSRD 35412
17-03-17 22:01:42.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:42.318 -07 000000627 INF: FPGA: Recv ZSGSRD 35410
17-03-17 22:01:42.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:42.328 -07 000000627 INF: FPGA: Recv ZPIEZORD 31382
17-03-17 22:01:42.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:42.338 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -8.9 V.
17-03-17 22:01:42.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35411 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35411 (-166.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35408 (-166.9 uncal um), Max = 35415 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:01:42.338 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35411, posNoise = 4, negNoise = 3
17-03-17 22:01:42.338 -07 000000610 INF: Z Motor: After move to -0.167805, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:42.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:01:42.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:42.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:42.338 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:42.338 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:42.338 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:42.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:42.338 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:42.338 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:42.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:42.338 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:42.338 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:42.338 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:42.338 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:01:42.338 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:42.348 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:42.348 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:42.348 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:42.348 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:42.358 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:42.358 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:01:42.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36834 150\n [Camera]
17-03-17 22:01:42.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:42.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:42.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:42.998 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:42.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:42.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:43.008 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:43.008 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:43.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:43.018 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:43.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:01:43.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36834 828
17-03-17 22:01:43.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:43.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:01:43.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 22:01:43.388 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:43.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:01:43.388 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:01:43.388 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:43.388 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:43.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:01:43.388 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:43.398 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:01:43.558 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:43.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:43.558 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:43.558 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:43.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:43.558 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:43.558 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:43.558 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:01:43.568 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:43.568 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:01:43.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:43.748 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:43.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36834 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-17 22:01:43.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:43.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167811128163032. ------
17-03-17 22:01:43.758 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:43.758 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17433 mm
17-03-17 22:01:43.758 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:43.758 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:43.758 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:01:43.758 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 22:01:43.758 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38082, sync = True, waitForSettling = False)
17-03-17 22:01:43.758 -07 000000482 INF: Z Motor: Moving to -0.174328 mm, started at -0.167811 mm, distance = -6.52 um
17-03-17 22:01:43.768 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:43.768 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:43.768 -07 000000627 INF: FPGA: Recv YRDPOS 144769
17-03-17 22:01:43.778 -07 000000482 INF: FPGA: Xmit ZDACW 38082\n [Z Motor]
17-03-17 22:01:43.778 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:01:43.778 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:43.778 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:43.778 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:01:43.778 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:01:43.788 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:43.788 -07 000000482 INF: FPGA: 'ZDACW 38082' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:01:43.798 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:43.808 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:43.808 -07 000000512 INF: FPGA: Recv ZDACR 38082
17-03-17 22:01:43.818 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:43.818 -07 000000482 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:01:43.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:01:43.948 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:01:43.948 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:43.958 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:01:43.958 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:01:43.958 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:43.958 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:43.958 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:43.958 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:01:43.968 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:01:43.998 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:43.998 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 231 ms overall
17-03-17 22:01:44.168 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:01:44.168 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:01:44.208 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:44.208 -07 000000627 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:01:44.218 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:44.218 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:44.218 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:01:44.218 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 22:01:44.308 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.011254,
17-03-17 22:01:45.168 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:45.168 -07 000000415 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:01:45.178 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:45.178 -07 000000569 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:45.198 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:45.198 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:45.198 -07 000000569 INF: Y Motor: Moved to 71.5186 after 1440 ms (table move)
17-03-17 22:01:45.198 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174328 mm (DAC = 38082)
17-03-17 22:01:45.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.208 -07 000000569 INF: FPGA: Recv ZSGSRD 36437
17-03-17 22:01:45.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:01:45.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36427
17-03-17 22:01:45.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.218 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.218 -07 000000512 INF: FPGA: Recv ZSGSRD 36425
17-03-17 22:01:45.228 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.238 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36436
17-03-17 22:01:45.248 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:45.248 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.248 -07 000000626 INF: FPGA: Recv ZSGSRD 36438
17-03-17 22:01:45.258 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.258 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.258 -07 000000512 INF: FPGA: Recv ZSGSRD 36425
17-03-17 22:01:45.268 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36421
17-03-17 22:01:45.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.278 -07 000000569 INF: FPGA: Recv ZSGSRD 36425
17-03-17 22:01:45.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.288 -07 000000569 INF: FPGA: Recv ZSGSRD 36428
17-03-17 22:01:45.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:45.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36429
17-03-17 22:01:45.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.308 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:45.308 -07 000000626 INF: FPGA: Recv ZPIEZORD 32717
17-03-17 22:01:45.318 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.318 -07 000000459 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.2 V.
17-03-17 22:01:45.318 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36429 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36428 (-173.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36421 (-173.4 uncal um), Max = 36438 (-173.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:01:45.318 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36429, posNoise = 9, negNoise = 8
17-03-17 22:01:45.318 -07 000000459 INF: Z Motor: After move to -0.174328, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:45.318 -07 000000459 INF: Z Motor: Settle wait time = 1443 ms, measure time = 113 ms (allowed 150 ms), total time = 1556 ms
17-03-17 22:01:45.318 -07 000000459 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:45.358 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:01:45.358 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:45.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:45.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:45.358 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:45.358 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:45.358 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:45.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:45.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:45.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:45.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:45.368 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:45.378 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:01:45.378 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:01:45.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:45.428 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:45.628 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:45.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:45.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:45.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:45.668 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:45.668 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:45.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 22:01:45.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:01:45.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:45.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:45.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:01:45.768 -07 000000626 INF: Autofocus start
17-03-17 22:01:45.768 -07 000000626 INF: MeasureProfile start
17-03-17 22:01:45.768 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:45.768 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:45.778 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:45.778 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:45.778 -07 000000626 INF: MeasureProfile done
17-03-17 22:01:45.778 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:01:45.778 -07 000000626 INF: Autofocus finished
17-03-17 22:01:45.978 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:45.978 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:45.978 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174350976123345. ----------
17-03-17 22:01:45.978 -07 000000610 INF: Cycle	58	Tile	15	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:45.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36632, sync = True, waitForSettling = True)
17-03-17 22:01:45.988 -07 000000610 INF: Z Motor: Moving to -0.167691 mm, started at -0.174351 mm, distance = 6.66 um
17-03-17 22:01:45.988 -07 000000610 INF: FPGA: Xmit ZDACW 36632\n [Z Motor]
17-03-17 22:01:45.988 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:01:45.998 -07 000000610 INF: FPGA: 'ZDACW 36632' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:45.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:45.998 -07 000000478 INF: FPGA: Recv ZDACR 36632
17-03-17 22:01:46.008 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.158 -07 000000512 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:01:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.168 -07 000000512 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:01:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35395
17-03-17 22:01:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.188 -07 000000512 INF: FPGA: Recv ZSGSRD 35392
17-03-17 22:01:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35396
17-03-17 22:01:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35394
17-03-17 22:01:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.218 -07 000000512 INF: FPGA: Recv ZSGSRD 35390
17-03-17 22:01:46.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.228 -07 000000512 INF: FPGA: Recv ZSGSRD 35396
17-03-17 22:01:46.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35391
17-03-17 22:01:46.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:46.248 -07 000000512 INF: FPGA: Recv ZSGSRD 35393
17-03-17 22:01:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:46.258 -07 000000512 INF: FPGA: Recv ZPIEZORD 31361
17-03-17 22:01:46.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:46.268 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -8.9 V.
17-03-17 22:01:46.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35393 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35393 (-166.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35390 (-166.8 uncal um), Max = 35396 (-166.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:01:46.268 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35393, posNoise = 3, negNoise = 3
17-03-17 22:01:46.268 -07 000000610 INF: Z Motor: After move to -0.167691, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:46.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:01:46.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:46.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:46.268 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:46.268 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:46.268 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:46.268 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:46.268 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:46.268 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:46.268 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:46.268 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:46.268 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:46.268 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:46.278 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:46.278 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:46.278 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:46.278 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:46.278 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:46.278 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:01:46.278 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:46.288 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:01:46.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36809 150\n [Camera]
17-03-17 22:01:46.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:46.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:46.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:46.928 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:46.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:46.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:46.928 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:46.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:46.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:01:46.928 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:46.938 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:46.938 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:47.118 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36809 828
17-03-17 22:01:47.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:47.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:01:47.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:01:47.308 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:01:47.308 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:47.308 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:01:47.308 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:47.318 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:01:47.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:01:47.318 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:01:47.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:01:47.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:47.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:47.488 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:47.488 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:47.488 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) start.
17-03-17 22:01:47.488 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:47.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:47.488 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:47.488 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:47.488 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 22:01:47.678 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:01:47.678 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:47.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36809 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-17 22:01:47.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:47.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167695492344481. ------
17-03-17 22:01:47.678 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:47.678 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17428 mm
17-03-17 22:01:47.678 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:47.678 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:01:47.688 -07 000000547 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 22:01:47.688 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38071, sync = True, waitForSettling = False)
17-03-17 22:01:47.688 -07 000000626 INF: Z Motor: Moving to -0.174278 mm, started at -0.167695 mm, distance = -6.58 um
17-03-17 22:01:47.688 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:47.688 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:47.688 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:01:47.688 -07 000000627 INF: FPGA: Recv YRDPOS 146470
17-03-17 22:01:47.698 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:47.698 -07 000000547 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:47.698 -07 000000547 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:47.698 -07 000000547 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:01:47.698 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:47.708 -07 000000626 INF: FPGA: Xmit ZDACW 38071\n [Z Motor]
17-03-17 22:01:47.708 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:01:47.718 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:47.718 -07 000000626 INF: FPGA: 'ZDACW 38071' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:47.728 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:47.728 -07 000000627 INF: FPGA: Recv ZDACR 38071
17-03-17 22:01:47.738 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:01:47.738 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 22:01:47.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2432798312, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:01:47.868 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:01:47.868 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:47.868 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:01:47.868 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:01:47.868 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:47.868 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:47.868 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:01:47.878 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:47.878 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:01:47.898 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:47.898 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 22:01:48.088 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:01:48.088 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:01:48.128 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:48.138 -07 000000626 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:01:48.138 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:48.138 -07 000000547 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:48.138 -07 000000547 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:01:48.138 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 22:01:49.088 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:49.088 -07 000000478 INF: FPGA: Recv YRDPOS 148171
17-03-17 22:01:49.098 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:49.098 -07 000000547 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:49.118 -07 000000547 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:49.118 -07 000000547 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:49.118 -07 000000547 INF: Y Motor: Moved to 72.3491 after 1435 ms (table move)
17-03-17 22:01:49.118 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174278 mm (DAC = 38071)
17-03-17 22:01:49.118 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.128 -07 000000502 INF: FPGA: Recv ZSGSRD 36424
17-03-17 22:01:49.128 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:01:49.128 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.128 -07 000000626 INF: FPGA: Recv ZSGSRD 36416
17-03-17 22:01:49.138 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:49.138 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.138 -07 000000626 INF: FPGA: Recv ZSGSRD 36421
17-03-17 22:01:49.148 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.148 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.148 -07 000000626 INF: FPGA: Recv ZSGSRD 36419
17-03-17 22:01:49.158 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.158 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.158 -07 000000502 INF: FPGA: Recv ZSGSRD 36419
17-03-17 22:01:49.168 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.168 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.168 -07 000000502 INF: FPGA: Recv ZSGSRD 36420
17-03-17 22:01:49.178 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.178 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.178 -07 000000502 INF: FPGA: Recv ZSGSRD 36417
17-03-17 22:01:49.188 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.188 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.188 -07 000000502 INF: FPGA: Recv ZSGSRD 36418
17-03-17 22:01:49.198 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.198 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.198 -07 000000459 INF: FPGA: Recv ZSGSRD 36413
17-03-17 22:01:49.208 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.208 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:49.208 -07 000000502 INF: FPGA: Recv ZSGSRD 36420
17-03-17 22:01:49.218 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.218 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:49.218 -07 000000547 INF: FPGA: Recv ZPIEZORD 32752
17-03-17 22:01:49.228 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.228 -07 000000424 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.1 V.
17-03-17 22:01:49.228 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36419 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36419 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36413 (-173.4 uncal um), Max = 36424 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:01:49.228 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36419, posNoise = 5, negNoise = 6
17-03-17 22:01:49.228 -07 000000424 INF: Z Motor: After move to -0.174278, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:49.228 -07 000000424 INF: Z Motor: Settle wait time = 1438 ms, measure time = 105 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:01:49.228 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:49.278 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:01:49.278 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:49.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:49.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:49.278 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:49.278 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:49.278 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:49.278 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:49.278 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:01:49.278 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:49.288 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:49.288 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:49.298 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:01:49.298 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:01:49.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:49.348 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:49.548 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:49.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:49.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:49.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:01:49.578 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:49.588 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:49.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:01:49.668 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.997626,
17-03-17 22:01:49.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:01:49.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:49.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:49.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:01:49.688 -07 000000547 INF: Autofocus start
17-03-17 22:01:49.688 -07 000000547 INF: MeasureProfile start
17-03-17 22:01:49.698 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:49.698 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:49.698 -07 000000547 INF: MeasureProfile done
17-03-17 22:01:49.698 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:01:49.698 -07 000000547 INF: Autofocus finished
17-03-17 22:01:49.708 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:01:49.708 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:49.908 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:49.908 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:49.908 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.174286734001927. ----------
17-03-17 22:01:49.908 -07 000000610 INF: Cycle	58	Tile	16	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:49.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36568, sync = True, waitForSettling = True)
17-03-17 22:01:49.918 -07 000000610 INF: Z Motor: Moving to -0.167398 mm, started at -0.174287 mm, distance = 6.89 um
17-03-17 22:01:49.918 -07 000000610 INF: FPGA: Xmit ZDACW 36568\n [Z Motor]
17-03-17 22:01:49.918 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:01:49.928 -07 000000610 INF: FPGA: 'ZDACW 36568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:49.928 -07 000000547 INF: FPGA: Recv ZDACR 36568
17-03-17 22:01:49.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:49.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.088 -07 000000547 INF: FPGA: Recv ZSGSRD 35347
17-03-17 22:01:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.098 -07 000000502 INF: FPGA: Recv ZSGSRD 35353
17-03-17 22:01:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.108 -07 000000502 INF: FPGA: Recv ZSGSRD 35347
17-03-17 22:01:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.118 -07 000000627 INF: FPGA: Recv ZSGSRD 35348
17-03-17 22:01:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35355
17-03-17 22:01:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35350
17-03-17 22:01:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.148 -07 000000627 INF: FPGA: Recv ZSGSRD 35349
17-03-17 22:01:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35346
17-03-17 22:01:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35352
17-03-17 22:01:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:50.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35351
17-03-17 22:01:50.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:50.188 -07 000000627 INF: FPGA: Recv ZPIEZORD 31293
17-03-17 22:01:50.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:50.198 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -8.9 V.
17-03-17 22:01:50.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35350 (-166.6 uncal um), Error = 0.8 uncal um, Median = 35350 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35346 (-166.5 uncal um), Max = 35355 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:01:50.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35350, posNoise = 5, negNoise = 4
17-03-17 22:01:50.198 -07 000000610 INF: Z Motor: After move to -0.167398, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:50.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:01:50.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:50.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:50.198 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:50.198 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:50.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:50.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:50.198 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:50.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:50.198 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:50.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:50.198 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:50.198 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:50.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:50.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:50.208 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:50.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:50.208 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:01:50.208 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:50.218 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:01:50.218 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:01:50.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36745 150\n [Camera]
17-03-17 22:01:50.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:50.858 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:50.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:50.858 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:50.858 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:50.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 22:01:50.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:50.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:50.858 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:50.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:50.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-17 22:01:51.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36745 828
17-03-17 22:01:51.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:51.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:01:51.238 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:01:51.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:51.248 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:51.248 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:01:51.248 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:01:51.248 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:01:51.258 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:51.258 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:51.258 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:01:51.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:51.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:51.418 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:51.418 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:51.418 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:01:51.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:51.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:51.418 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:51.418 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:51.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:01:51.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:51.728 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:51.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36745 150' command took 2 ms to send, 1503 ms to get response, and 1510 ms overall
17-03-17 22:01:51.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:51.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167419251222385. ------
17-03-17 22:01:51.728 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:51.728 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17390 mm
17-03-17 22:01:51.728 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:51.738 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:01:51.738 -07 000000569 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 22:01:51.738 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:51.738 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:51.738 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:51.738 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37989, sync = True, waitForSettling = False)
17-03-17 22:01:51.738 -07 000000459 INF: Z Motor: Moving to -0.173902 mm, started at -0.167419 mm, distance = -6.48 um
17-03-17 22:01:51.738 -07 000000433 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:01:51.748 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:51.748 -07 000000569 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:51.748 -07 000000459 INF: FPGA: Xmit ZDACW 37989\n [Z Motor]
17-03-17 22:01:51.748 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:01:51.748 -07 000000569 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:51.748 -07 000000569 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:01:51.758 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:51.758 -07 000000459 INF: FPGA: 'ZDACW 37989' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:01:51.768 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:51.778 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:51.778 -07 000000429 INF: FPGA: Recv ZDACR 37989
17-03-17 22:01:51.788 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:51.788 -07 000000459 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:01:51.808 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:01:51.808 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:01:51.808 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:51.828 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:01:51.828 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:01:51.828 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:51.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:01:51.828 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 20 ms.
17-03-17 22:01:51.828 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:01:51.838 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 22:01:51.928 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:51.958 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:51.958 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 22:01:52.148 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:01:52.148 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 394 ms overall
17-03-17 22:01:52.178 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:52.188 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:01:52.188 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:01:52.188 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:52.188 -07 000000569 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 22:01:52.188 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.141 mm/sec
17-03-17 22:01:53.138 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:53.138 -07 000000512 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:01:53.148 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:53.148 -07 000000569 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:53.168 -07 000000569 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:53.168 -07 000000569 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:01:53.168 -07 000000569 INF: Y Motor: Moved to 73.1758 after 1433 ms (table move)
17-03-17 22:01:53.168 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173902 mm (DAC = 37989)
17-03-17 22:01:53.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.178 -07 000000429 INF: FPGA: Recv ZSGSRD 36363
17-03-17 22:01:53.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:01:53.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.178 -07 000000459 INF: FPGA: Recv ZSGSRD 36361
17-03-17 22:01:53.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:53.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.188 -07 000000415 INF: FPGA: Recv ZSGSRD 36350
17-03-17 22:01:53.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36354
17-03-17 22:01:53.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.208 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.208 -07 000000415 INF: FPGA: Recv ZSGSRD 36358
17-03-17 22:01:53.218 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.218 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36356
17-03-17 22:01:53.228 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.228 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.228 -07 000000627 INF: FPGA: Recv ZSGSRD 36360
17-03-17 22:01:53.238 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.238 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36360
17-03-17 22:01:53.248 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.248 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.248 -07 000000502 INF: FPGA: Recv ZSGSRD 36362
17-03-17 22:01:53.258 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.258 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:53.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36364
17-03-17 22:01:53.268 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.268 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:53.268 -07 000000502 INF: FPGA: Recv ZPIEZORD 32710
17-03-17 22:01:53.278 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.278 -07 000000547 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.797 V. Piezo Error = -8.1 V.
17-03-17 22:01:53.278 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36359 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36360 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36350 (-173.0 uncal um), Max = 36364 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:01:53.278 -07 000000547 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36359, posNoise = 5, negNoise = 9
17-03-17 22:01:53.278 -07 000000547 INF: Z Motor: After move to -0.173902, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:53.278 -07 000000547 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:01:53.278 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:53.328 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:01:53.328 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:53.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:53.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:53.338 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:53.338 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:53.338 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:53.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:53.348 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:53.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:53.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:01:53.348 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:53.358 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:01:53.358 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:01:53.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:53.418 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:53.618 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:53.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:53.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:53.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:53.648 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:53.658 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:53.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:01:53.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:01:53.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:53.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:53.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:01:53.758 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:53.758 -07 000000415 INF: Autofocus start
17-03-17 22:01:53.758 -07 000000415 INF: MeasureProfile start
17-03-17 22:01:53.758 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:53.768 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:01:53.768 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:53.778 -07 000000415 INF: MeasureProfile done
17-03-17 22:01:53.778 -07 000000415 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:01:53.778 -07 000000415 INF: Autofocus finished
17-03-17 22:01:53.968 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:53.968 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:01:53.968 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173901281273422. ----------
17-03-17 22:01:53.968 -07 000000610 INF: Cycle	58	Tile	17	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:53.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36486, sync = True, waitForSettling = True)
17-03-17 22:01:53.978 -07 000000610 INF: Z Motor: Moving to -0.167022 mm, started at -0.173901 mm, distance = 6.88 um
17-03-17 22:01:53.978 -07 000000610 INF: FPGA: Xmit ZDACW 36486\n [Z Motor]
17-03-17 22:01:53.978 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:01:53.988 -07 000000610 INF: FPGA: 'ZDACW 36486' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:53.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:53.988 -07 000000512 INF: FPGA: Recv ZDACR 36486
17-03-17 22:01:53.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:53.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.148 -07 000000512 INF: FPGA: Recv ZSGSRD 35293
17-03-17 22:01:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35294
17-03-17 22:01:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:01:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35294
17-03-17 22:01:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35287
17-03-17 22:01:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35286
17-03-17 22:01:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35293
17-03-17 22:01:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.218 -07 000000433 INF: FPGA: Recv ZSGSRD 35294
17-03-17 22:01:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35289
17-03-17 22:01:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:54.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35283
17-03-17 22:01:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:54.248 -07 000000512 INF: FPGA: Recv ZPIEZORD 31258
17-03-17 22:01:54.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:54.258 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -8.9 V.
17-03-17 22:01:54.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35290 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35291 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35283 (-166.1 uncal um), Max = 35294 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:01:54.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35290, posNoise = 4, negNoise = 7
17-03-17 22:01:54.258 -07 000000610 INF: Z Motor: After move to -0.167022, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:54.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:01:54.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:54.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:54.258 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:54.258 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:54.258 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:54.258 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:54.258 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:54.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:54.258 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:01:54.258 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:54.258 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:54.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:54.258 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:01:54.258 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:54.258 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:01:54.268 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:54.268 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:54.268 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:54.268 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:01:54.268 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:01:54.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36662 150\n [Camera]
17-03-17 22:01:54.468 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:54.918 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:54.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:54.918 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:54.918 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:54.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:54.918 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:54.918 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:54.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:54.928 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:54.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:01:55.048 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.973092,
17-03-17 22:01:55.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36662 828
17-03-17 22:01:55.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:55.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:01:55.318 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:01:55.318 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:55.318 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:55.318 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:01:55.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:01:55.318 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:01:55.318 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:55.328 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:55.338 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:01:55.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:55.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:55.478 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:55.478 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:55.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:55.478 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:55.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:55.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:01:55.488 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:55.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:01:55.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:01:55.668 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:55.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36662 150' command took 2 ms to send, 1381 ms to get response, and 1390 ms overall
17-03-17 22:01:55.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:55.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.167033798493879. ------
17-03-17 22:01:55.668 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:55.668 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17331 mm
17-03-17 22:01:55.668 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:55.668 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:01:55.668 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 22:01:55.668 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:55.678 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:55.788 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:55.788 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37859, sync = True, waitForSettling = False)
17-03-17 22:01:55.788 -07 000000415 INF: Z Motor: Moving to -0.173307 mm, started at -0.167034 mm, distance = -6.27 um
17-03-17 22:01:55.798 -07 000000415 INF: FPGA: Xmit ZDACW 37859\n [Z Motor]
17-03-17 22:01:55.798 -07 000000502 INF: FPGA: Recv YRDPOS 149864
17-03-17 22:01:55.798 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 121 ms overall
17-03-17 22:01:55.798 -07 000000459 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:55.798 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:55.798 -07 000000459 INF: Y Motor: Moving 1355 steps-34
17-03-17 22:01:55.798 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:01:55.808 -07 000000415 INF: FPGA: 'ZDACW 37859' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:01:55.808 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:55.818 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:55.828 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:55.828 -07 000000541 INF: FPGA: Recv ZDACR 37859
17-03-17 22:01:55.838 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:01:55.838 -07 000000415 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 22:01:55.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:01:55.878 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:01:55.878 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:55.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:01:55.878 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:01:55.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:55.878 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:55.888 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:55.888 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:01:55.888 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:01:56.008 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:56.008 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-17 22:01:56.188 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 22:01:56.188 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 22:01:56.228 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:56.228 -07 000000424 INF: FPGA: Recv YRDPOS 151567
17-03-17 22:01:56.238 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:56.238 -07 000000459 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:56.238 -07 000000459 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:01:56.238 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.847 mm, average velocity = 2.138 mm/sec
17-03-17 22:01:56.938 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:01:56.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:01:57.188 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:57.188 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:01:57.198 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:57.198 -07 000000459 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:57.208 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:01:57.208 -07 000000459 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:01:57.208 -07 000000459 INF: Y Motor: Moved to 74.0078 after 1539 ms (table move)
17-03-17 22:01:57.218 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173307 mm (DAC = 37859)
17-03-17 22:01:57.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.218 -07 000000415 INF: FPGA: Recv ZSGSRD 36267
17-03-17 22:01:57.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:01:57.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.238 -07 000000415 INF: FPGA: Recv ZSGSRD 36260
17-03-17 22:01:57.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 7 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:01:57.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.248 -07 000000424 INF: FPGA: Recv ZSGSRD 36276
17-03-17 22:01:57.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:01:57.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.258 -07 000000424 INF: FPGA: Recv ZSGSRD 36269
17-03-17 22:01:57.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.268 -07 000000424 INF: FPGA: Recv ZSGSRD 36263
17-03-17 22:01:57.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.278 -07 000000424 INF: FPGA: Recv ZSGSRD 36270
17-03-17 22:01:57.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.288 -07 000000424 INF: FPGA: Recv ZSGSRD 36274
17-03-17 22:01:57.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.298 -07 000000424 INF: FPGA: Recv ZSGSRD 36267
17-03-17 22:01:57.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.308 -07 000000459 INF: FPGA: Recv ZSGSRD 36271
17-03-17 22:01:57.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:57.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36275
17-03-17 22:01:57.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.328 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:57.328 -07 000000459 INF: FPGA: Recv ZPIEZORD 32573
17-03-17 22:01:57.338 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:57.338 -07 000000433 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.2 V.
17-03-17 22:01:57.338 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36269 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36270 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36260 (-172.4 uncal um), Max = 36276 (-172.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:01:57.338 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36269, posNoise = 7, negNoise = 9
17-03-17 22:01:57.338 -07 000000433 INF: Z Motor: After move to -0.173307, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:57.338 -07 000000433 INF: Z Motor: Settle wait time = 1423 ms, measure time = 118 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:01:57.338 -07 000000433 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 22:01:57.378 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 22:01:57.378 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:01:57.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:57.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:57.378 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:57.378 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:57.378 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:01:57.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:57.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:01:57.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:01:57.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:57.388 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:01:57.388 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:01:57.388 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:01:57.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:01:57.438 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:01:57.638 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:01:57.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:01:57.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:01:57.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:01:57.678 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:01:57.678 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:01:57.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 287 ms overall
17-03-17 22:01:57.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:01:57.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:57.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:01:57.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:01:57.778 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:57.778 -07 000000429 INF: Autofocus start
17-03-17 22:01:57.778 -07 000000429 INF: MeasureProfile start
17-03-17 22:01:57.778 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:57.788 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:01:57.788 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:01:57.788 -07 000000429 INF: MeasureProfile done
17-03-17 22:01:57.788 -07 000000429 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:01:57.788 -07 000000429 INF: Autofocus finished
17-03-17 22:01:57.988 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:01:57.988 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 22:01:57.998 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173323102180663. ----------
17-03-17 22:01:57.998 -07 000000610 INF: Cycle	58	Tile	18	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:01:57.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36392, sync = True, waitForSettling = True)
17-03-17 22:01:57.998 -07 000000610 INF: Z Motor: Moving to -0.166592 mm, started at -0.173323 mm, distance = 6.73 um
17-03-17 22:01:57.998 -07 000000610 INF: FPGA: Xmit ZDACW 36392\n [Z Motor]
17-03-17 22:01:57.998 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:01:58.008 -07 000000610 INF: FPGA: 'ZDACW 36392' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:01:58.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:58.008 -07 000000478 INF: FPGA: Recv ZDACR 36392
17-03-17 22:01:58.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:01:58.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.168 -07 000000424 INF: FPGA: Recv ZSGSRD 35224
17-03-17 22:01:58.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:58.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.178 -07 000000547 INF: FPGA: Recv ZSGSRD 35229
17-03-17 22:01:58.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.188 -07 000000424 INF: FPGA: Recv ZSGSRD 35225
17-03-17 22:01:58.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.198 -07 000000478 INF: FPGA: Recv ZSGSRD 35221
17-03-17 22:01:58.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35222
17-03-17 22:01:58.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35218
17-03-17 22:01:58.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35229
17-03-17 22:01:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.238 -07 000000478 INF: FPGA: Recv ZSGSRD 35220
17-03-17 22:01:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.248 -07 000000502 INF: FPGA: Recv ZSGSRD 35224
17-03-17 22:01:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:01:58.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35221
17-03-17 22:01:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:01:58.268 -07 000000627 INF: FPGA: Recv ZPIEZORD 31163
17-03-17 22:01:58.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:58.278 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.0 V.
17-03-17 22:01:58.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35223 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35223 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35218 (-165.7 uncal um), Max = 35229 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:01:58.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35223, posNoise = 6, negNoise = 5
17-03-17 22:01:58.278 -07 000000610 INF: Z Motor: After move to -0.166592, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:01:58.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:01:58.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:01:58.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:01:58.278 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:01:58.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:01:58.278 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:01:58.278 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:01:58.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:01:58.278 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:01:58.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:01:58.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:01:58.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:01:58.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:01:58.288 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:01:58.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:01:58.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:01:58.288 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:01:58.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:01:58.288 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:01:58.298 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:01:58.298 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:01:58.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36568 150\n [Camera]
17-03-17 22:01:58.498 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:01:58.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:01:58.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:01:58.938 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:58.948 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:01:58.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:01:58.948 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:58.948 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:58.948 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:01:58.948 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:58.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:01:59.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36568 828
17-03-17 22:01:59.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:01:59.338 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:01:59.338 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:01:59.338 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:59.348 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:59.348 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:01:59.348 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:01:59.348 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:01:59.348 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:59.348 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:01:59.358 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:01:59.498 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:01:59.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:01:59.498 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:01:59.498 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:01:59.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:01:59.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:01:59.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:01:59.508 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:01:59.508 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:01:59.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:01:59.688 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1388
17-03-17 22:01:59.698 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:01:59.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36568 150' command took 2 ms to send, 1390 ms to get response, and 1395 ms overall
17-03-17 22:01:59.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:01:59.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166603376280381. ------
17-03-17 22:01:59.698 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:01:59.698 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17305 mm
17-03-17 22:01:59.698 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:01:59.698 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:01:59.698 -07 000000459 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 22:01:59.698 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37803, sync = True, waitForSettling = False)
17-03-17 22:01:59.698 -07 000000627 INF: Z Motor: Moving to -0.173051 mm, started at -0.166603 mm, distance = -6.45 um
17-03-17 22:01:59.708 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:01:59.708 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:01:59.708 -07 000000627 INF: FPGA: Xmit ZDACW 37803\n [Z Motor]
17-03-17 22:01:59.708 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 22:01:59.718 -07 000000627 INF: FPGA: 'ZDACW 37803' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:01:59.718 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:01:59.718 -07 000000415 INF: FPGA: Recv ZDACR 37803
17-03-17 22:01:59.728 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:01:59.728 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:01:59.728 -07 000000627 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 22:01:59.728 -07 000000415 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:01:59.738 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:01:59.738 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:01:59.738 -07 000000459 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:01:59.738 -07 000000459 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:01:59.738 -07 000000459 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:01:59.748 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:01:59.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:01:59.908 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:01:59.908 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:59.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:01:59.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:01:59.908 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:01:59.908 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:59.908 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:01:59.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:01:59.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:01:59.938 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:01:59.938 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:02:00.118 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:02:00.118 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:02:00.148 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:00.148 -07 000000547 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:02:00.158 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:02:00.158 -07 000000459 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:00.158 -07 000000459 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 22:02:00.158 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-17 22:02:00.408 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.979922,
17-03-17 22:02:01.108 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:01.108 -07 000000627 INF: FPGA: Recv YRDPOS 153255
17-03-17 22:02:01.118 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:01.118 -07 000000459 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:01.128 -07 000000459 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:01.128 -07 000000459 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:01.128 -07 000000459 INF: Y Motor: Moved to 74.8315 after 1428 ms (table move)
17-03-17 22:02:01.138 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173051 mm (DAC = 37803)
17-03-17 22:02:01.138 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.138 -07 000000478 INF: FPGA: Recv ZSGSRD 36226
17-03-17 22:02:01.148 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:01.148 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.148 -07 000000459 INF: FPGA: Recv ZSGSRD 36218
17-03-17 22:02:01.158 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.158 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.158 -07 000000459 INF: FPGA: Recv ZSGSRD 36223
17-03-17 22:02:01.168 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.168 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.168 -07 000000478 INF: FPGA: Recv ZSGSRD 36233
17-03-17 22:02:01.178 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.178 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36232
17-03-17 22:02:01.188 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.188 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36230
17-03-17 22:02:01.198 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.198 -07 000000424 INF: FPGA: Recv ZSGSRD 36224
17-03-17 22:02:01.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.208 -07 000000547 INF: FPGA: Recv ZSGSRD 36229
17-03-17 22:02:01.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.218 -07 000000424 INF: FPGA: Recv ZSGSRD 36228
17-03-17 22:02:01.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:01.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36224
17-03-17 22:02:01.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.238 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:01.238 -07 000000478 INF: FPGA: Recv ZPIEZORD 32519
17-03-17 22:02:01.248 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.248 -07 000000433 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.2 V.
17-03-17 22:02:01.248 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36227 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36227 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36218 (-172.1 uncal um), Max = 36233 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:02:01.248 -07 000000433 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36227, posNoise = 6, negNoise = 9
17-03-17 22:02:01.248 -07 000000433 INF: Z Motor: After move to -0.173051, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:01.248 -07 000000433 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:02:01.248 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:01.298 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:02:01.298 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:01.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:01.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:01.298 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:01.298 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:01.298 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:01.298 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:01.298 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:02:01.298 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:01.308 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:01.308 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:01.308 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:02:01.308 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:02:01.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:01.358 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:01.558 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:01.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:01.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:01.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:02:01.598 -07 000000459 INF: FPGA: Recv @CAMSNAP 283
17-03-17 22:02:01.598 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:01.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 22:02:01.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:02:01.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:01.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:01.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:02:01.698 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:01.698 -07 000000459 INF: Autofocus start
17-03-17 22:02:01.698 -07 000000459 INF: MeasureProfile start
17-03-17 22:02:01.698 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:01.708 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:01.708 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:01.708 -07 000000459 INF: MeasureProfile done
17-03-17 22:02:01.708 -07 000000459 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:02:01.708 -07 000000459 INF: Autofocus finished
17-03-17 22:02:01.908 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:01.908 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:01.908 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.173053285270709. ----------
17-03-17 22:02:01.918 -07 000000610 INF: Cycle	58	Tile	19	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:01.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36336, sync = True, waitForSettling = True)
17-03-17 22:02:01.918 -07 000000610 INF: Z Motor: Moving to -0.166336 mm, started at -0.173053 mm, distance = 6.72 um
17-03-17 22:02:01.918 -07 000000610 INF: FPGA: Xmit ZDACW 36336\n [Z Motor]
17-03-17 22:02:01.918 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:02:01.928 -07 000000610 INF: FPGA: 'ZDACW 36336' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:01.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:01.928 -07 000000433 INF: FPGA: Recv ZDACR 36336
17-03-17 22:02:01.938 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:01.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:01.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:01.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:02.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.088 -07 000000502 INF: FPGA: Recv ZSGSRD 35182
17-03-17 22:02:02.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.098 -07 000000541 INF: FPGA: Recv ZSGSRD 35187
17-03-17 22:02:02.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35185
17-03-17 22:02:02.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35183
17-03-17 22:02:02.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35186
17-03-17 22:02:02.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.138 -07 000000415 INF: FPGA: Recv ZSGSRD 35189
17-03-17 22:02:02.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35185
17-03-17 22:02:02.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.158 -07 000000429 INF: FPGA: Recv ZSGSRD 35180
17-03-17 22:02:02.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.168 -07 000000415 INF: FPGA: Recv ZSGSRD 35185
17-03-17 22:02:02.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:02.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35184
17-03-17 22:02:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:02.188 -07 000000429 INF: FPGA: Recv ZPIEZORD 31113
17-03-17 22:02:02.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:02.198 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.0 V.
17-03-17 22:02:02.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35185 (-165.5 uncal um), Error = 0.8 uncal um, Median = 35185 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35180 (-165.5 uncal um), Max = 35189 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:02:02.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35185, posNoise = 4, negNoise = 5
17-03-17 22:02:02.198 -07 000000610 INF: Z Motor: After move to -0.166336, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:02.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:02.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:02.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:02.198 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:02.198 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:02.198 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:02.198 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:02.198 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:02.198 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:02.198 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:02:02.198 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:02.208 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:02.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:02.208 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:02.208 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:02.208 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:02.208 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:02.218 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:02:02.218 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:02:02.218 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:02:02.218 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:02:02.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 36513 150\n [Camera]
17-03-17 22:02:02.418 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:02.868 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:02.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:02.868 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:02.868 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:02.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:02:02.868 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:02.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:02.868 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:02.868 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:02.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:02:03.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36513 828
17-03-17 22:02:03.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:03.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:02:03.258 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:02:03.258 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:03.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:02:03.258 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:02:03.258 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:03.258 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:03.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:02:03.258 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:03.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:02:03.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:03.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:03.418 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:03.428 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:03.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-17 22:02:03.428 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:03.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:03.428 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:03.428 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:03.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:02:03.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:03.618 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:03.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 36513 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 22:02:03.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:02:03.828 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:02:03.828 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:03.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:02:03.828 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:02:03.828 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:03.838 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:03.838 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:02:03.838 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:02:03.838 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:02:03.838 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:02:03.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:02:03.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:02:03.928 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:02:03.928 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:02:04.048 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:02:04.048 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 22:02:04.058 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:04.058 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:02:04.558 -07 000000569 INF: FPGA: Recv EMIN
17-03-17 22:02:04.558 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:02:04.558 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:02:04.558 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 22:02:04.568 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:04.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:04.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166359256218994. ------
17-03-17 22:02:04.568 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:04.568 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14048 mm
17-03-17 22:02:04.568 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:04.568 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:04.568 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:02:04.568 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 22:02:04.578 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:04.578 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30688, sync = True, waitForSettling = False)
17-03-17 22:02:04.578 -07 000000502 INF: Z Motor: Moving to -0.140481 mm, started at -0.166359 mm, distance = 25.88 um
17-03-17 22:02:04.578 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:04.578 -07 000000478 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:02:04.588 -07 000000459 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:04.588 -07 000000459 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:04.588 -07 000000502 INF: FPGA: Xmit ZDACW 30688\n [Z Motor]
17-03-17 22:02:04.588 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:02:04.588 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:02:04.588 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:02:04.598 -07 000000502 INF: FPGA: 'ZDACW 30688' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:02:04.598 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:04.608 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:02:04.618 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:04.618 -07 000000512 INF: FPGA: Recv ZDACR 30688
17-03-17 22:02:04.628 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:04.628 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:02:04.798 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:04.798 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:02:05.768 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.014009,
17-03-17 22:02:06.228 -07 000000486 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 22:02:06.228 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1642 ms overall
17-03-17 22:02:06.228 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:02:06.228 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:02:06.228 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-17 22:02:06.938 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:09.078 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:09.078 -07 000000424 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:02:09.088 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:09.088 -07 000000459 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:09.118 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:09.118 -07 000000459 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:02:09.118 -07 000000459 INF: Y Motor: Moved to 59.9111 after 4542 ms
17-03-17 22:02:09.118 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140481 mm (DAC = 30688)
17-03-17 22:02:09.118 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.118 -07 000000486 INF: FPGA: Recv ZSGSRD 31166
17-03-17 22:02:09.128 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:09.128 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.128 -07 000000626 INF: FPGA: Recv ZSGSRD 31161
17-03-17 22:02:09.138 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.138 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.138 -07 000000433 INF: FPGA: Recv ZSGSRD 31160
17-03-17 22:02:09.148 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.148 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.148 -07 000000486 INF: FPGA: Recv ZSGSRD 31154
17-03-17 22:02:09.158 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.158 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.158 -07 000000476 INF: FPGA: Recv ZSGSRD 31158
17-03-17 22:02:09.168 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.168 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.168 -07 000000433 INF: FPGA: Recv ZSGSRD 31158
17-03-17 22:02:09.178 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:09.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.178 -07 000000433 INF: FPGA: Recv ZSGSRD 31156
17-03-17 22:02:09.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.188 -07 000000626 INF: FPGA: Recv ZSGSRD 31154
17-03-17 22:02:09.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.198 -07 000000433 INF: FPGA: Recv ZSGSRD 31159
17-03-17 22:02:09.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.208 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:09.208 -07 000000627 INF: FPGA: Recv ZSGSRD 31155
17-03-17 22:02:09.218 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.218 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:09.218 -07 000000486 INF: FPGA: Recv ZPIEZORD 26866
17-03-17 22:02:09.228 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.228 -07 000000569 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.683 V. Piezo Error = -9.4 V.
17-03-17 22:02:09.228 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31158 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31158 (-139.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31154 (-139.7 uncal um), Max = 31166 (-139.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:02:09.228 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31158, posNoise = 8, negNoise = 4
17-03-17 22:02:09.228 -07 000000569 INF: Z Motor: After move to -0.140481, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:09.228 -07 000000569 INF: Z Motor: Settle wait time = 4544 ms, measure time = 106 ms (allowed 150 ms), total time = 4650 ms
17-03-17 22:02:09.228 -07 000000569 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:09.278 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 22:02:09.278 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:09.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:09.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:09.278 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:09.278 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:09.278 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:09.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:09.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:02:09.278 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:02:09.298 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 22:02:09.298 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:09.308 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:09.308 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:09.308 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:02:09.308 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 22:02:09.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:09.358 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:09.558 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:09.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:09.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:09.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:02:09.598 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:09.598 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:09.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 22:02:09.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 22:02:09.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:09.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:09.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:02:09.698 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:09.698 -07 000000433 INF: Image SNR check: start
17-03-17 22:02:09.698 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:09.708 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:09.708 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:09.718 -07 000000433 INF: Image SNR check: pass  [peak (Max-Min)=58.50]
17-03-17 22:02:09.718 -07 000000433 INF: Autofocus start
17-03-17 22:02:09.718 -07 000000433 INF: MeasureProfile start
17-03-17 22:02:09.728 -07 000000433 INF: MeasureProfile done
17-03-17 22:02:09.728 -07 000000433 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:02:09.728 -07 000000433 INF: Autofocus finished
17-03-17 22:02:09.908 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:09.908 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:09.908 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140488953924123. ----------
17-03-17 22:02:09.908 -07 000000610 INF: Cycle	58	Tile	1	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:09.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29182, sync = True, waitForSettling = True)
17-03-17 22:02:09.918 -07 000000610 INF: Z Motor: Moving to -0.133587 mm, started at -0.140489 mm, distance = 6.90 um
17-03-17 22:02:09.918 -07 000000610 INF: FPGA: Xmit ZDACW 29182\n [Z Motor]
17-03-17 22:02:09.918 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:02:09.928 -07 000000610 INF: FPGA: 'ZDACW 29182' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:09.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:09.928 -07 000000433 INF: FPGA: Recv ZDACR 29182
17-03-17 22:02:09.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:09.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:10.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.088 -07 000000433 INF: FPGA: Recv ZSGSRD 30086
17-03-17 22:02:10.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:10.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.098 -07 000000433 INF: FPGA: Recv ZSGSRD 30087
17-03-17 22:02:10.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.108 -07 000000433 INF: FPGA: Recv ZSGSRD 30083
17-03-17 22:02:10.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.118 -07 000000433 INF: FPGA: Recv ZSGSRD 30085
17-03-17 22:02:10.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.128 -07 000000433 INF: FPGA: Recv ZSGSRD 30086
17-03-17 22:02:10.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.138 -07 000000433 INF: FPGA: Recv ZSGSRD 30084
17-03-17 22:02:10.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.148 -07 000000433 INF: FPGA: Recv ZSGSRD 30083
17-03-17 22:02:10.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.158 -07 000000433 INF: FPGA: Recv ZSGSRD 30083
17-03-17 22:02:10.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30084
17-03-17 22:02:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:10.178 -07 000000475 INF: FPGA: Recv ZSGSRD 30086
17-03-17 22:02:10.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:10.188 -07 000000475 INF: FPGA: Recv ZPIEZORD 25701
17-03-17 22:02:10.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:10.198 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.453 V. Piezo Error = -9.6 V.
17-03-17 22:02:10.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30085 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30084 (-132.8 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 30083 (-132.8 uncal um), Max = 30087 (-132.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 22:02:10.198 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30085, posNoise = 2, negNoise = 2
17-03-17 22:02:10.198 -07 000000610 INF: Z Motor: After move to -0.133587, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:10.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:10.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:10.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:10.198 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:10.198 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:10.198 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:10.198 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:10.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:10.198 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:10.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:02:10.198 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:02:10.198 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:10.198 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:10.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:10.208 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:10.218 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:02:10.218 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:02:10.218 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:02:10.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:10.228 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:10.228 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:10.238 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:02:10.238 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 22:02:10.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29359 150\n [Camera]
17-03-17 22:02:10.438 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:10.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:10.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:10.888 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:10.888 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:10.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:10.888 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:10.888 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:10.888 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:02:10.898 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:10.898 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:02:11.078 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29359 828
17-03-17 22:02:11.128 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.038479,
17-03-17 22:02:11.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:11.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:02:11.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:02:11.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:11.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:11.278 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:02:11.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:02:11.278 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:02:11.278 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:11.278 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:11.288 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:02:11.438 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:11.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:11.438 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:11.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:11.438 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:11.438 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:02:11.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:11.448 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:11.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:11.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:02:11.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:11.628 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:11.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29359 150' command took 2 ms to send, 1387 ms to get response, and 1390 ms overall
17-03-17 22:02:11.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:11.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133595774296013. ------
17-03-17 22:02:11.638 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:11.638 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13998 mm
17-03-17 22:02:11.638 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:11.638 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:02:11.638 -07 000000012 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:02:11.638 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30578, sync = True, waitForSettling = False)
17-03-17 22:02:11.638 -07 000000569 INF: Z Motor: Moving to -0.139977 mm, started at -0.133596 mm, distance = -6.38 um
17-03-17 22:02:11.638 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:11.648 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:11.648 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:11.648 -07 000000512 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:02:11.658 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:02:11.658 -07 000000012 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:11.658 -07 000000012 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:11.658 -07 000000012 INF: Y Motor: Moving 1330 steps2
17-03-17 22:02:11.658 -07 000000569 INF: FPGA: Xmit ZDACW 30578\n [Z Motor]
17-03-17 22:02:11.658 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:02:11.668 -07 000000569 INF: FPGA: 'ZDACW 30578' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:02:11.668 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:11.678 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:11.688 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:11.688 -07 000000627 INF: FPGA: Recv ZDACR 30578
17-03-17 22:02:11.698 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:11.698 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:02:11.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:02:11.838 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:02:11.838 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:11.838 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:11.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:02:11.868 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:11.868 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:02:11.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:11.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:11.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:02:11.938 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:02:11.938 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:11.948 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:02:11.948 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:02:12.048 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:02:12.048 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 22:02:12.088 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:12.088 -07 000000512 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:02:12.098 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:12.098 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:12.098 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:02:12.098 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 22:02:13.048 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:13.048 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:02:13.058 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:13.058 -07 000000012 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:13.078 -07 000000012 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:13.078 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:02:13.078 -07 000000012 INF: Y Motor: Moved to 60.7334 after 1437 ms (table move)
17-03-17 22:02:13.078 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139977 mm (DAC = 30578)
17-03-17 22:02:13.078 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.088 -07 000000569 INF: FPGA: Recv ZSGSRD 31091
17-03-17 22:02:13.088 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:02:13.088 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.088 -07 000000569 INF: FPGA: Recv ZSGSRD 31078
17-03-17 22:02:13.098 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:13.098 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.098 -07 000000569 INF: FPGA: Recv ZSGSRD 31082
17-03-17 22:02:13.108 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.108 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.108 -07 000000012 INF: FPGA: Recv ZSGSRD 31085
17-03-17 22:02:13.118 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.118 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.118 -07 000000569 INF: FPGA: Recv ZSGSRD 31083
17-03-17 22:02:13.128 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.128 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.128 -07 000000569 INF: FPGA: Recv ZSGSRD 31083
17-03-17 22:02:13.138 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.138 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.138 -07 000000569 INF: FPGA: Recv ZSGSRD 31078
17-03-17 22:02:13.148 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.148 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.148 -07 000000569 INF: FPGA: Recv ZSGSRD 31075
17-03-17 22:02:13.158 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.158 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.158 -07 000000569 INF: FPGA: Recv ZSGSRD 31075
17-03-17 22:02:13.168 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.168 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:13.168 -07 000000569 INF: FPGA: Recv ZSGSRD 31074
17-03-17 22:02:13.178 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.178 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:13.178 -07 000000569 INF: FPGA: Recv ZPIEZORD 27035
17-03-17 22:02:13.188 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.188 -07 000000476 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.666 V. Piezo Error = -8.9 V.
17-03-17 22:02:13.188 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31080 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31080 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31074 (-139.1 uncal um), Max = 31091 (-139.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:02:13.188 -07 000000476 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31080, posNoise = 11, negNoise = 6
17-03-17 22:02:13.188 -07 000000476 INF: Z Motor: After move to -0.139977, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:13.188 -07 000000476 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:02:13.188 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:13.238 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:02:13.238 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:13.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:13.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:13.238 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:13.238 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:13.238 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:13.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:13.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:13.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:13.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:13.248 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:13.258 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:02:13.258 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:02:13.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:13.308 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:13.508 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:13.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:13.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:13.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:02:13.548 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:13.548 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:13.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:02:13.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:02:13.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:13.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:13.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:02:13.648 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:13.648 -07 000000512 INF: Autofocus start
17-03-17 22:02:13.648 -07 000000512 INF: MeasureProfile start
17-03-17 22:02:13.648 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:13.658 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:02:13.658 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:13.658 -07 000000512 INF: MeasureProfile done
17-03-17 22:02:13.658 -07 000000512 INF: X=13  Z correction [um]=0.03858674
17-03-17 22:02:13.658 -07 000000512 INF: Autofocus finished
17-03-17 22:02:13.858 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:13.858 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:13.858 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139987865377066. ----------
17-03-17 22:02:13.858 -07 000000610 INF: Cycle	58	Tile	2	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:13.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29099, sync = True, waitForSettling = True)
17-03-17 22:02:13.868 -07 000000610 INF: Z Motor: Moving to -0.133207 mm, started at -0.139988 mm, distance = 6.78 um
17-03-17 22:02:13.868 -07 000000610 INF: FPGA: Xmit ZDACW 29099\n [Z Motor]
17-03-17 22:02:13.868 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:02:13.878 -07 000000610 INF: FPGA: 'ZDACW 29099' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:13.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:13.878 -07 000000475 INF: FPGA: Recv ZDACR 29099
17-03-17 22:02:13.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:13.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:14.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30027
17-03-17 22:02:14.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:14.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.048 -07 000000627 INF: FPGA: Recv ZSGSRD 30021
17-03-17 22:02:14.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30031
17-03-17 22:02:14.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.068 -07 000000627 INF: FPGA: Recv ZSGSRD 30026
17-03-17 22:02:14.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.078 -07 000000433 INF: FPGA: Recv ZSGSRD 30023
17-03-17 22:02:14.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.088 -07 000000475 INF: FPGA: Recv ZSGSRD 30026
17-03-17 22:02:14.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.098 -07 000000476 INF: FPGA: Recv ZSGSRD 30028
17-03-17 22:02:14.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30028
17-03-17 22:02:14.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.118 -07 000000627 INF: FPGA: Recv ZSGSRD 30023
17-03-17 22:02:14.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:14.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30022
17-03-17 22:02:14.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:14.138 -07 000000627 INF: FPGA: Recv ZPIEZORD 25695
17-03-17 22:02:14.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:14.148 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.5 V.
17-03-17 22:02:14.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30026 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30026 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30021 (-132.4 uncal um), Max = 30031 (-132.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:02:14.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30026, posNoise = 5, negNoise = 5
17-03-17 22:02:14.148 -07 000000610 INF: Z Motor: After move to -0.133207, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:14.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:02:14.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:14.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:14.148 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:14.148 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:14.148 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:14.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:14.148 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:14.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:14.148 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:14.148 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:14.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:14.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:14.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:02:14.158 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:14.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:14.158 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:14.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:02:14.168 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:02:14.168 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:02:14.168 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:02:14.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29276 150\n [Camera]
17-03-17 22:02:14.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:14.818 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:14.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:14.818 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:14.818 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:14.818 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:14.818 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:14.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:14.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:14.818 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:14.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:02:15.008 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29276 828
17-03-17 22:02:15.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:15.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:02:15.218 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:02:15.218 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:15.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:02:15.218 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:02:15.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:15.228 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:15.228 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:02:15.228 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:15.228 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:02:15.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:15.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:15.378 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:15.378 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:15.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:02:15.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:15.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:15.378 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:15.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:15.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:02:15.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:02:15.568 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:15.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29276 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-17 22:02:15.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:15.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.13321674577965. ------
17-03-17 22:02:15.568 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:15.568 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13974 mm
17-03-17 22:02:15.568 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:15.578 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:15.578 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:02:15.578 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:15.578 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30526, sync = True, waitForSettling = False)
17-03-17 22:02:15.578 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:02:15.578 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 22:02:15.578 -07 000000433 INF: Z Motor: Moving to -0.139739 mm, started at -0.133217 mm, distance = -6.52 um
17-03-17 22:02:15.588 -07 000000433 INF: FPGA: Xmit ZDACW 30526\n [Z Motor]
17-03-17 22:02:15.588 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:02:15.598 -07 000000433 INF: FPGA: 'ZDACW 30526' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:02:15.598 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:15.598 -07 000000569 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:02:15.608 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:02:15.608 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:15.608 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:15.608 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:02:15.608 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:15.608 -07 000000569 INF: FPGA: Recv ZDACR 30526
17-03-17 22:02:15.618 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:02:15.618 -07 000000433 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 22:02:15.618 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:15.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:02:15.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:02:15.778 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:15.778 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:15.778 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:02:15.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:02:15.778 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:02:15.778 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:15.788 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:15.788 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 22:02:15.788 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:02:15.788 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:02:15.988 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 22:02:15.988 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 22:02:16.028 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:16.038 -07 000000429 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:02:16.038 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:16.038 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:16.038 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:02:16.038 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-17 22:02:16.488 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.000345,
17-03-17 22:02:16.938 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:16.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:16.988 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:16.988 -07 000000433 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:02:16.998 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:16.998 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:17.018 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:17.018 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:17.018 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1440 ms (table move)
17-03-17 22:02:17.018 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139739 mm (DAC = 30526)
17-03-17 22:02:17.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.028 -07 000000569 INF: FPGA: Recv ZSGSRD 31052
17-03-17 22:02:17.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:02:17.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.028 -07 000000627 INF: FPGA: Recv ZSGSRD 31038
17-03-17 22:02:17.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:17.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.038 -07 000000569 INF: FPGA: Recv ZSGSRD 31043
17-03-17 22:02:17.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.048 -07 000000012 INF: FPGA: Recv ZSGSRD 31047
17-03-17 22:02:17.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.058 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.058 -07 000000512 INF: FPGA: Recv ZSGSRD 31049
17-03-17 22:02:17.068 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.068 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.068 -07 000000012 INF: FPGA: Recv ZSGSRD 31037
17-03-17 22:02:17.078 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.078 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.078 -07 000000512 INF: FPGA: Recv ZSGSRD 31043
17-03-17 22:02:17.088 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.088 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.088 -07 000000012 INF: FPGA: Recv ZSGSRD 31037
17-03-17 22:02:17.098 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.098 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.098 -07 000000512 INF: FPGA: Recv ZSGSRD 31036
17-03-17 22:02:17.108 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.108 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.108 -07 000000547 INF: FPGA: Recv ZSGSRD 31043
17-03-17 22:02:17.118 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.118 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:17.118 -07 000000569 INF: FPGA: Recv ZPIEZORD 27076
17-03-17 22:02:17.128 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.128 -07 000000626 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.658 V. Piezo Error = -8.7 V.
17-03-17 22:02:17.128 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31042 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31043 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31036 (-138.9 uncal um), Max = 31052 (-139.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:02:17.128 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31042, posNoise = 10, negNoise = 6
17-03-17 22:02:17.128 -07 000000626 INF: Z Motor: After move to -0.139739, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:17.128 -07 000000626 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:02:17.128 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:17.178 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:02:17.178 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:17.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:17.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:17.178 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:17.178 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:17.178 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:17.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:17.178 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:17.178 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:17.188 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:17.188 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:17.188 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:02:17.188 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:02:17.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:17.238 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:17.438 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:17.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:17.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:17.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:02:17.478 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:17.478 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:17.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:02:17.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:02:17.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:17.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:17.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:02:17.578 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:17.578 -07 000000012 INF: Autofocus start
17-03-17 22:02:17.578 -07 000000012 INF: MeasureProfile start
17-03-17 22:02:17.578 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:17.588 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:17.588 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:17.588 -07 000000012 INF: MeasureProfile done
17-03-17 22:02:17.588 -07 000000012 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:02:17.588 -07 000000012 INF: Autofocus finished
17-03-17 22:02:17.788 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:17.788 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:17.788 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139743745315679. ----------
17-03-17 22:02:17.798 -07 000000610 INF: Cycle	58	Tile	3	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:17.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29021, sync = True, waitForSettling = True)
17-03-17 22:02:17.798 -07 000000610 INF: Z Motor: Moving to -0.132850 mm, started at -0.139744 mm, distance = 6.89 um
17-03-17 22:02:17.798 -07 000000610 INF: FPGA: Xmit ZDACW 29021\n [Z Motor]
17-03-17 22:02:17.798 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:02:17.808 -07 000000610 INF: FPGA: 'ZDACW 29021' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:17.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:17.808 -07 000000547 INF: FPGA: Recv ZDACR 29021
17-03-17 22:02:17.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:17.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29972
17-03-17 22:02:17.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:17.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29972
17-03-17 22:02:17.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.988 -07 000000433 INF: FPGA: Recv ZSGSRD 29971
17-03-17 22:02:17.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:17.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:17.998 -07 000000433 INF: FPGA: Recv ZSGSRD 29965
17-03-17 22:02:18.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:18.008 -07 000000569 INF: FPGA: Recv ZSGSRD 29961
17-03-17 22:02:18.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:18.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29972
17-03-17 22:02:18.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:18.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29966
17-03-17 22:02:18.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:18.038 -07 000000569 INF: FPGA: Recv ZSGSRD 29968
17-03-17 22:02:18.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:18.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29972
17-03-17 22:02:18.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:18.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29974
17-03-17 22:02:18.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:18.068 -07 000000512 INF: FPGA: Recv ZPIEZORD 25691
17-03-17 22:02:18.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:18.078 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.4 V.
17-03-17 22:02:18.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29969 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29972 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29961 (-132.0 uncal um), Max = 29974 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:02:18.078 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29969, posNoise = 5, negNoise = 8
17-03-17 22:02:18.078 -07 000000610 INF: Z Motor: After move to -0.132850, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:18.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:02:18.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:18.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:18.078 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:18.078 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:18.078 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:18.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:18.078 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:18.078 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:18.078 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:02:18.078 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:18.078 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:02:18.078 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:18.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:18.088 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:18.088 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:18.088 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:18.098 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:02:18.098 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:02:18.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:02:18.098 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:02:18.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29198 150\n [Camera]
17-03-17 22:02:18.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:18.748 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:18.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:18.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:18.748 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:18.748 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:18.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:02:18.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:18.748 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:18.748 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:18.748 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:02:18.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29198 828
17-03-17 22:02:19.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:19.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:02:19.138 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:02:19.138 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:19.138 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:19.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:02:19.138 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:02:19.138 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:19.148 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:02:19.148 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:19.148 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:02:19.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:19.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:19.298 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:19.298 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:19.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:02:19.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:19.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:19.308 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:19.308 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:19.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:02:19.488 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:19.498 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:19.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29198 150' command took 2 ms to send, 1380 ms to get response, and 1391 ms overall
17-03-17 22:02:19.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:19.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132850565687569. ------
17-03-17 22:02:19.498 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:19.498 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13921 mm
17-03-17 22:02:19.498 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:19.498 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:19.498 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:02:19.498 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30411, sync = True, waitForSettling = False)
17-03-17 22:02:19.498 -07 000000626 INF: Z Motor: Moving to -0.139213 mm, started at -0.132851 mm, distance = -6.36 um
17-03-17 22:02:19.508 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:02:19.508 -07 000000626 INF: FPGA: Xmit ZDACW 30411\n [Z Motor]
17-03-17 22:02:19.508 -07 000000458 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:02:19.508 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:02:19.518 -07 000000626 INF: FPGA: 'ZDACW 30411' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:19.518 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:19.528 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:19.528 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:02:19.538 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:19.538 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:19.538 -07 000000458 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:19.538 -07 000000458 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:19.538 -07 000000458 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:02:19.538 -07 000000502 INF: FPGA: Recv ZDACR 30411
17-03-17 22:02:19.548 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:19.548 -07 000000626 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:02:19.548 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:19.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:02:19.708 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:02:19.708 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:19.708 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:02:19.708 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:02:19.708 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:19.718 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:19.718 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:02:19.718 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:02:19.718 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:19.718 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:02:19.718 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:02:19.918 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 22:02:19.918 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:02:19.958 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:19.958 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:02:19.968 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:19.968 -07 000000458 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:19.968 -07 000000458 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:02:19.968 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 22:02:20.918 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:20.918 -07 000000476 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:02:20.928 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:20.928 -07 000000458 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:20.948 -07 000000458 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:20.948 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:20.948 -07 000000458 INF: Y Motor: Moved to 62.3955 after 1443 ms (table move)
17-03-17 22:02:20.948 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139213 mm (DAC = 30411)
17-03-17 22:02:20.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:20.948 -07 000000482 INF: FPGA: Recv ZSGSRD 30959
17-03-17 22:02:20.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:20.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:20.958 -07 000000478 INF: FPGA: Recv ZSGSRD 30966
17-03-17 22:02:20.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:20.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:20.968 -07 000000458 INF: FPGA: Recv ZSGSRD 30969
17-03-17 22:02:20.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:20.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:20.978 -07 000000626 INF: FPGA: Recv ZSGSRD 30963
17-03-17 22:02:20.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:20.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:20.988 -07 000000012 INF: FPGA: Recv ZSGSRD 30958
17-03-17 22:02:20.998 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:20.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:20.998 -07 000000429 INF: FPGA: Recv ZSGSRD 30964
17-03-17 22:02:21.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30957
17-03-17 22:02:21.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.018 -07 000000627 INF: FPGA: Recv ZSGSRD 30959
17-03-17 22:02:21.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.028 -07 000000012 INF: FPGA: Recv ZSGSRD 30956
17-03-17 22:02:21.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.038 -07 000000429 INF: FPGA: Recv ZSGSRD 30963
17-03-17 22:02:21.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.048 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:21.048 -07 000000569 INF: FPGA: Recv ZPIEZORD 27004
17-03-17 22:02:21.058 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.058 -07 000000475 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.7 V.
17-03-17 22:02:21.058 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30961 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30961 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30956 (-138.4 uncal um), Max = 30969 (-138.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:02:21.058 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30961, posNoise = 8, negNoise = 5
17-03-17 22:02:21.058 -07 000000475 INF: Z Motor: After move to -0.139213, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:21.058 -07 000000475 INF: Z Motor: Settle wait time = 1446 ms, measure time = 104 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:02:21.058 -07 000000475 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:21.108 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:02:21.108 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:21.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:21.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:21.108 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:21.108 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:21.108 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:21.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:21.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:02:21.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:21.118 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:21.118 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:21.128 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:02:21.128 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:02:21.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:21.178 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:21.368 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:21.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:21.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:21.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 22:02:21.408 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:21.418 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:21.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:02:21.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:02:21.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:21.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:02:21.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:02:21.518 -07 000000476 INF: Autofocus start
17-03-17 22:02:21.518 -07 000000476 INF: MeasureProfile start
17-03-17 22:02:21.518 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:21.518 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:21.528 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:21.528 -07 000000476 INF: MeasureProfile done
17-03-17 22:02:21.528 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:02:21.528 -07 000000476 INF: Autofocus finished
17-03-17 22:02:21.538 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:21.738 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:21.738 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 22:02:21.738 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139223384132196. ----------
17-03-17 22:02:21.738 -07 000000610 INF: Cycle	58	Tile	4	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:21.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28919, sync = True, waitForSettling = True)
17-03-17 22:02:21.748 -07 000000610 INF: Z Motor: Moving to -0.132383 mm, started at -0.139223 mm, distance = 6.84 um
17-03-17 22:02:21.748 -07 000000610 INF: FPGA: Xmit ZDACW 28919\n [Z Motor]
17-03-17 22:02:21.748 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:02:21.758 -07 000000610 INF: FPGA: 'ZDACW 28919' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:21.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:21.758 -07 000000476 INF: FPGA: Recv ZDACR 28919
17-03-17 22:02:21.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:21.848 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.969015,
17-03-17 22:02:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.918 -07 000000433 INF: FPGA: Recv ZSGSRD 29895
17-03-17 22:02:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29900
17-03-17 22:02:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.938 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:21.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:21.938 -07 000000502 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:02:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.948 -07 000000459 INF: FPGA: Recv ZSGSRD 29903
17-03-17 22:02:21.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.958 -07 000000012 INF: FPGA: Recv ZSGSRD 29895
17-03-17 22:02:21.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.968 -07 000000459 INF: FPGA: Recv ZSGSRD 29897
17-03-17 22:02:21.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.978 -07 000000012 INF: FPGA: Recv ZSGSRD 29905
17-03-17 22:02:21.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29896
17-03-17 22:02:21.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:21.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:21.998 -07 000000012 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:02:22.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:22.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:22.008 -07 000000459 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:02:22.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:22.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:22.018 -07 000000459 INF: FPGA: Recv ZPIEZORD 25633
17-03-17 22:02:22.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:22.028 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.4 V.
17-03-17 22:02:22.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29897 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29894 (-131.6 uncal um), Max = 29905 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:02:22.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29897, posNoise = 8, negNoise = 3
17-03-17 22:02:22.028 -07 000000610 INF: Z Motor: After move to -0.132383, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:22.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:02:22.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:22.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:22.038 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:22.038 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:22.038 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:22.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:22.038 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:22.038 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:22.038 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:02:22.038 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:22.038 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:02:22.038 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:22.038 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:02:22.038 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:22.038 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:22.038 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:22.048 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 22:02:22.048 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:02:22.048 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:02:22.048 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:02:22.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29096 150\n [Camera]
17-03-17 22:02:22.258 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:22.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 638
17-03-17 22:02:22.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 638
17-03-17 22:02:22.698 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:22.698 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:22.698 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:02:22.708 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 638
17-03-17 22:02:22.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 638
17-03-17 22:02:22.708 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:22.708 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:22.708 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:02:22.888 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29096 828
17-03-17 22:02:23.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:23.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:02:23.078 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:02:23.078 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:23.078 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:02:23.088 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:02:23.088 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:23.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:23.088 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:02:23.088 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:23.098 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:02:23.258 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:23.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:23.258 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:23.258 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:23.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:02:23.258 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:23.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:23.258 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:23.258 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:23.258 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 22:02:23.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:02:23.448 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:23.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29096 150' command took 2 ms to send, 1382 ms to get response, and 1391 ms overall
17-03-17 22:02:23.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:23.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132388022413362. ------
17-03-17 22:02:23.448 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:23.448 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13912 mm
17-03-17 22:02:23.448 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:23.578 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:23.578 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 22:02:23.578 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:23.578 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30390, sync = True, waitForSettling = False)
17-03-17 22:02:23.578 -07 000000424 INF: Z Motor: Moving to -0.139117 mm, started at -0.132388 mm, distance = -6.73 um
17-03-17 22:02:23.578 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:02:23.578 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:02:23.588 -07 000000424 INF: FPGA: Xmit ZDACW 30390\n [Z Motor]
17-03-17 22:02:23.588 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:02:23.598 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:23.598 -07 000000424 INF: FPGA: 'ZDACW 30390' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:02:23.598 -07 000000433 INF: FPGA: Recv YRDPOS 127787
17-03-17 22:02:23.608 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:02:23.608 -07 000000502 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:23.608 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:23.608 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:23.608 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:02:23.608 -07 000000012 INF: FPGA: Recv ZDACR 30390
17-03-17 22:02:23.618 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:02:23.618 -07 000000424 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 22:02:23.618 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:23.658 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:02:23.658 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:02:23.658 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:23.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:02:23.658 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:02:23.658 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:23.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:23.668 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:02:23.668 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:02:23.668 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:02:23.778 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:23.778 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 22:02:23.988 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:02:23.988 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:02:24.028 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:24.038 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:02:24.038 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:24.038 -07 000000502 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:24.038 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:02:24.038 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 22:02:24.988 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:24.988 -07 000000458 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:02:24.998 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:24.998 -07 000000502 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:25.018 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:25.018 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:02:25.018 -07 000000502 INF: Y Motor: Moved to 63.2246 after 1438 ms (table move)
17-03-17 22:02:25.018 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139117 mm (DAC = 30390)
17-03-17 22:02:25.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.028 -07 000000476 INF: FPGA: Recv ZSGSRD 30950
17-03-17 22:02:25.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:02:25.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.028 -07 000000476 INF: FPGA: Recv ZSGSRD 30945
17-03-17 22:02:25.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:25.038 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30948
17-03-17 22:02:25.048 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.048 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.048 -07 000000476 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:02:25.058 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.058 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.058 -07 000000476 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:02:25.068 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.068 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.068 -07 000000458 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:02:25.078 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.078 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.078 -07 000000458 INF: FPGA: Recv ZSGSRD 30941
17-03-17 22:02:25.088 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.088 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.088 -07 000000458 INF: FPGA: Recv ZSGSRD 30944
17-03-17 22:02:25.098 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.098 -07 000000547 INF: FPGA: Recv ZSGSRD 30948
17-03-17 22:02:25.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.108 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30941
17-03-17 22:02:25.118 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.118 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:25.118 -07 000000547 INF: FPGA: Recv ZPIEZORD 27012
17-03-17 22:02:25.128 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.128 -07 000000459 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.637 V. Piezo Error = -8.7 V.
17-03-17 22:02:25.128 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30947 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30948 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30941 (-138.3 uncal um), Max = 30953 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:02:25.128 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30947, posNoise = 6, negNoise = 6
17-03-17 22:02:25.128 -07 000000459 INF: Z Motor: After move to -0.139117, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:25.128 -07 000000459 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:02:25.128 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:25.178 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-17 22:02:25.178 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:25.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:25.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:25.178 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:25.178 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:25.178 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:25.178 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:25.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:25.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:25.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:25.188 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:25.188 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:02:25.188 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:02:25.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:25.238 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:25.438 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:25.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:25.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:25.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:02:25.478 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:25.478 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:25.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:02:25.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:02:25.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:25.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:25.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:02:25.578 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:25.578 -07 000000424 INF: Autofocus start
17-03-17 22:02:25.578 -07 000000424 INF: MeasureProfile start
17-03-17 22:02:25.578 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:25.588 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:02:25.588 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:25.588 -07 000000424 INF: MeasureProfile done
17-03-17 22:02:25.588 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:02:25.588 -07 000000424 INF: Autofocus finished
17-03-17 22:02:25.788 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:25.788 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:25.798 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139133445162211. ----------
17-03-17 22:02:25.798 -07 000000610 INF: Cycle	58	Tile	5	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:25.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28914, sync = True, waitForSettling = True)
17-03-17 22:02:25.798 -07 000000610 INF: Z Motor: Moving to -0.132360 mm, started at -0.139133 mm, distance = 6.77 um
17-03-17 22:02:25.798 -07 000000610 INF: FPGA: Xmit ZDACW 28914\n [Z Motor]
17-03-17 22:02:25.798 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:02:25.808 -07 000000610 INF: FPGA: 'ZDACW 28914' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:25.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:25.808 -07 000000433 INF: FPGA: Recv ZDACR 28914
17-03-17 22:02:25.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.968 -07 000000512 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:02:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.978 -07 000000424 INF: FPGA: Recv ZSGSRD 29901
17-03-17 22:02:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.988 -07 000000433 INF: FPGA: Recv ZSGSRD 29895
17-03-17 22:02:25.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:25.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:25.998 -07 000000458 INF: FPGA: Recv ZSGSRD 29884
17-03-17 22:02:26.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:26.008 -07 000000433 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:02:26.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:26.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:02:26.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:26.028 -07 000000424 INF: FPGA: Recv ZSGSRD 29898
17-03-17 22:02:26.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:26.038 -07 000000433 INF: FPGA: Recv ZSGSRD 29896
17-03-17 22:02:26.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:26.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29892
17-03-17 22:02:26.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:26.058 -07 000000424 INF: FPGA: Recv ZSGSRD 29894
17-03-17 22:02:26.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:26.068 -07 000000512 INF: FPGA: Recv ZPIEZORD 25586
17-03-17 22:02:26.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:26.078 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.5 V.
17-03-17 22:02:26.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29893 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29893 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29884 (-131.5 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:02:26.078 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29893, posNoise = 8, negNoise = 9
17-03-17 22:02:26.078 -07 000000610 INF: Z Motor: After move to -0.132360, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:26.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:26.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:26.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:26.078 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:26.078 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:26.078 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:26.078 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:26.078 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:26.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:26.078 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:26.078 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:26.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:26.078 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:26.088 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:26.088 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:26.088 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:26.088 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:26.098 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:02:26.098 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:02:26.098 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:02:26.098 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:02:26.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29091 150\n [Camera]
17-03-17 22:02:26.298 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:02:26.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:26.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:26.738 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:26.748 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:26.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:26.748 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:26.748 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:26.748 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:02:26.758 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:26.758 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:02:26.938 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29091 828
17-03-17 22:02:26.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:27.088 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:27.138 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:02:27.138 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:02:27.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:27.148 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:27.148 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:02:27.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:02:27.148 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:02:27.148 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:27.158 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:27.158 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:02:27.208 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.979922,
17-03-17 22:02:27.298 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:27.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:27.298 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:27.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:27.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:27.308 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:27.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:27.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 22:02:27.428 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:27.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:02:27.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:27.488 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:27.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29091 150' command took 2 ms to send, 1385 ms to get response, and 1391 ms overall
17-03-17 22:02:27.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:27.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132362325564795. ------
17-03-17 22:02:27.498 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:27.498 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13881 mm
17-03-17 22:02:27.498 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:27.498 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:02:27.498 -07 000000459 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 22:02:27.498 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30322, sync = True, waitForSettling = False)
17-03-17 22:02:27.498 -07 000000415 INF: Z Motor: Moving to -0.138805 mm, started at -0.132362 mm, distance = -6.44 um
17-03-17 22:02:27.498 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:27.508 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:27.508 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:27.508 -07 000000424 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:02:27.518 -07 000000415 INF: FPGA: Xmit ZDACW 30322\n [Z Motor]
17-03-17 22:02:27.518 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:02:27.518 -07 000000459 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:27.518 -07 000000459 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:27.518 -07 000000459 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:02:27.518 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:02:27.528 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:27.528 -07 000000415 INF: FPGA: 'ZDACW 30322' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 22:02:27.538 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:27.548 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:27.548 -07 000000012 INF: FPGA: Recv ZDACR 30322
17-03-17 22:02:27.558 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:27.558 -07 000000415 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 22:02:27.728 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:27.728 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:02:27.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:02:27.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:02:27.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:27.828 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:02:27.828 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:02:27.828 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:27.828 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:27.828 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:27.828 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 22:02:27.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 22:02:27.908 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:02:27.908 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:02:27.948 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:27.948 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:02:27.958 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:27.958 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:27.958 -07 000000459 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:02:27.958 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 22:02:28.908 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:28.908 -07 000000012 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:02:28.918 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:28.918 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:28.938 -07 000000459 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:28.938 -07 000000459 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:28.938 -07 000000459 INF: Y Motor: Moved to 64.0571 after 1437 ms (table move)
17-03-17 22:02:28.938 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138805 mm (DAC = 30322)
17-03-17 22:02:28.938 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.938 -07 000000424 INF: FPGA: Recv ZSGSRD 30898
17-03-17 22:02:28.948 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:28.948 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.948 -07 000000459 INF: FPGA: Recv ZSGSRD 30893
17-03-17 22:02:28.958 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:28.958 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30896
17-03-17 22:02:28.968 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:28.968 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.968 -07 000000459 INF: FPGA: Recv ZSGSRD 30901
17-03-17 22:02:28.978 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:28.978 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.978 -07 000000626 INF: FPGA: Recv ZSGSRD 30903
17-03-17 22:02:28.988 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:28.988 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30898
17-03-17 22:02:28.998 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:28.998 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:28.998 -07 000000012 INF: FPGA: Recv ZSGSRD 30891
17-03-17 22:02:29.008 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.008 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.008 -07 000000476 INF: FPGA: Recv ZSGSRD 30902
17-03-17 22:02:29.018 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.018 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.018 -07 000000415 INF: FPGA: Recv ZSGSRD 30897
17-03-17 22:02:29.028 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.028 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.028 -07 000000424 INF: FPGA: Recv ZSGSRD 30897
17-03-17 22:02:29.038 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.038 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:29.038 -07 000000459 INF: FPGA: Recv ZPIEZORD 26925
17-03-17 22:02:29.048 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.048 -07 000000458 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -8.7 V.
17-03-17 22:02:29.048 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30898 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30898 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30891 (-138.0 uncal um), Max = 30903 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:02:29.048 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30898, posNoise = 5, negNoise = 7
17-03-17 22:02:29.048 -07 000000458 INF: Z Motor: After move to -0.138805, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:29.048 -07 000000458 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:02:29.048 -07 000000458 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:29.098 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 22:02:29.098 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:29.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:29.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:29.098 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:29.098 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:29.098 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:29.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:29.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:29.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:29.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:29.108 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:29.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:02:29.118 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:02:29.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:29.168 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:29.368 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:29.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:29.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:29.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:02:29.408 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:29.408 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:29.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:02:29.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:02:29.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:29.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:29.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:02:29.508 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:29.508 -07 000000482 INF: Autofocus start
17-03-17 22:02:29.508 -07 000000482 INF: MeasureProfile start
17-03-17 22:02:29.508 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:29.518 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:29.518 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:29.518 -07 000000482 INF: MeasureProfile done
17-03-17 22:02:29.518 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:02:29.518 -07 000000482 INF: Autofocus finished
17-03-17 22:02:29.718 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:29.718 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:29.718 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138818658767265. ----------
17-03-17 22:02:29.718 -07 000000610 INF: Cycle	58	Tile	6	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:29.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-17 22:02:29.728 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138819 mm, distance = 6.77 um
17-03-17 22:02:29.728 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-17 22:02:29.728 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:02:29.738 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:29.738 -07 000000459 INF: FPGA: Recv ZDACR 28847
17-03-17 22:02:29.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29850
17-03-17 22:02:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:29.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.908 -07 000000415 INF: FPGA: Recv ZSGSRD 29839
17-03-17 22:02:29.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.918 -07 000000459 INF: FPGA: Recv ZSGSRD 29838
17-03-17 22:02:29.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.928 -07 000000459 INF: FPGA: Recv ZSGSRD 29846
17-03-17 22:02:29.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.938 -07 000000458 INF: FPGA: Recv ZSGSRD 29846
17-03-17 22:02:29.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.948 -07 000000458 INF: FPGA: Recv ZSGSRD 29844
17-03-17 22:02:29.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.958 -07 000000458 INF: FPGA: Recv ZSGSRD 29849
17-03-17 22:02:29.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.968 -07 000000459 INF: FPGA: Recv ZSGSRD 29850
17-03-17 22:02:29.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29849
17-03-17 22:02:29.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:29.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29847
17-03-17 22:02:29.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:29.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:29.998 -07 000000424 INF: FPGA: Recv ZPIEZORD 25572
17-03-17 22:02:30.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:30.008 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.4 V.
17-03-17 22:02:30.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29846 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29838 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:02:30.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29846, posNoise = 4, negNoise = 8
17-03-17 22:02:30.008 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:30.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:02:30.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:30.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:30.008 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:30.008 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:30.008 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:30.008 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:30.008 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:30.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:30.008 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:30.008 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:30.008 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:30.008 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:30.018 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:30.018 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:30.018 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:30.018 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:30.028 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:02:30.028 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:02:30.028 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:02:30.028 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:02:30.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 29023 150\n [Camera]
17-03-17 22:02:30.228 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:30.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:30.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:30.668 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:30.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:30.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:30.668 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:30.668 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:30.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:02:30.678 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:30.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:02:30.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29023 828
17-03-17 22:02:31.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:31.048 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 22:02:31.048 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:02:31.048 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:31.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:02:31.048 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:02:31.048 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:31.058 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:31.058 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:02:31.058 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:31.068 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:02:31.228 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:31.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:31.228 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:31.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:31.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:31.228 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:31.228 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:31.228 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:31.228 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:31.228 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:02:31.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:31.418 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:31.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 29023 150' command took 2 ms to send, 1383 ms to get response, and 1391 ms overall
17-03-17 22:02:31.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:31.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132060387594133. ------
17-03-17 22:02:31.428 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13862 mm
17-03-17 22:02:31.428 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:31.428 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:31.428 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:31.428 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30281, sync = True, waitForSettling = False)
17-03-17 22:02:31.428 -07 000000424 INF: Z Motor: Moving to -0.138618 mm, started at -0.132060 mm, distance = -6.56 um
17-03-17 22:02:31.428 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:02:31.428 -07 000000012 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:02:31.438 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:31.438 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:31.438 -07 000000415 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:02:31.448 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:02:31.448 -07 000000012 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:31.448 -07 000000012 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:31.448 -07 000000012 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:02:31.448 -07 000000424 INF: FPGA: Xmit ZDACW 30281\n [Z Motor]
17-03-17 22:02:31.448 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:02:31.458 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:31.458 -07 000000424 INF: FPGA: 'ZDACW 30281' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:02:31.468 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:31.478 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:31.478 -07 000000482 INF: FPGA: Recv ZDACR 30281
17-03-17 22:02:31.488 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:31.488 -07 000000424 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:02:31.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:02:31.628 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:02:31.628 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:31.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:02:31.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:02:31.628 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:31.628 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:31.628 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:31.628 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:02:31.638 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:02:31.658 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:31.658 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:02:31.838 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 22:02:31.838 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:02:31.878 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:31.878 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:02:31.888 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:02:31.888 -07 000000012 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:31.888 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:02:31.888 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 22:02:31.938 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:31.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:32.568 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.964938,
17-03-17 22:02:32.838 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:32.838 -07 000000424 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:02:32.848 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:32.848 -07 000000012 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:32.868 -07 000000012 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:32.868 -07 000000012 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:02:32.868 -07 000000012 INF: Y Motor: Moved to 64.8794 after 1440 ms (table move)
17-03-17 22:02:32.868 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138618 mm (DAC = 30281)
17-03-17 22:02:32.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.878 -07 000000424 INF: FPGA: Recv ZSGSRD 30873
17-03-17 22:02:32.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:02:32.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.878 -07 000000626 INF: FPGA: Recv ZSGSRD 30871
17-03-17 22:02:32.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:32.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30867
17-03-17 22:02:32.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30866
17-03-17 22:02:32.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.908 -07 000000482 INF: FPGA: Recv ZSGSRD 30860
17-03-17 22:02:32.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.918 -07 000000429 INF: FPGA: Recv ZSGSRD 30871
17-03-17 22:02:32.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.928 -07 000000012 INF: FPGA: Recv ZSGSRD 30873
17-03-17 22:02:32.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30867
17-03-17 22:02:32.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.948 -07 000000012 INF: FPGA: Recv ZSGSRD 30859
17-03-17 22:02:32.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.958 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:32.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30864
17-03-17 22:02:32.968 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.968 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:32.968 -07 000000482 INF: FPGA: Recv ZPIEZORD 26905
17-03-17 22:02:32.978 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:32.978 -07 000000476 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.7 V.
17-03-17 22:02:32.978 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30867 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30867 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30859 (-137.8 uncal um), Max = 30873 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:02:32.978 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30867, posNoise = 6, negNoise = 8
17-03-17 22:02:32.978 -07 000000476 INF: Z Motor: After move to -0.138618, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:32.978 -07 000000476 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:02:32.978 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:33.028 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 22:02:33.028 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:33.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:33.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:33.028 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:33.028 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:33.028 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:33.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:33.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:02:33.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:33.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:33.038 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:33.038 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:02:33.038 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:02:33.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:33.088 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:33.288 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:33.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:33.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:33.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) start.
17-03-17 22:02:33.328 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:33.328 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:33.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:02:33.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:02:33.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:33.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:33.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:02:33.428 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:33.428 -07 000000482 INF: Autofocus start
17-03-17 22:02:33.428 -07 000000482 INF: MeasureProfile start
17-03-17 22:02:33.428 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:33.438 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:33.438 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:33.438 -07 000000482 INF: MeasureProfile done
17-03-17 22:02:33.438 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:02:33.438 -07 000000482 INF: Autofocus finished
17-03-17 22:02:33.638 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:33.638 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:33.638 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.13861950819087. ----------
17-03-17 22:02:33.638 -07 000000610 INF: Cycle	58	Tile	7	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:33.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28805, sync = True, waitForSettling = True)
17-03-17 22:02:33.648 -07 000000610 INF: Z Motor: Moving to -0.131861 mm, started at -0.138620 mm, distance = 6.76 um
17-03-17 22:02:33.648 -07 000000610 INF: FPGA: Xmit ZDACW 28805\n [Z Motor]
17-03-17 22:02:33.648 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:02:33.658 -07 000000610 INF: FPGA: 'ZDACW 28805' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:33.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:33.658 -07 000000627 INF: FPGA: Recv ZDACR 28805
17-03-17 22:02:33.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.818 -07 000000012 INF: FPGA: Recv ZSGSRD 29814
17-03-17 22:02:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29811
17-03-17 22:02:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.848 -07 000000626 INF: FPGA: Recv ZSGSRD 29815
17-03-17 22:02:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:02:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.858 -07 000000627 INF: FPGA: Recv ZSGSRD 29815
17-03-17 22:02:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.868 -07 000000012 INF: FPGA: Recv ZSGSRD 29823
17-03-17 22:02:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29806
17-03-17 22:02:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.888 -07 000000012 INF: FPGA: Recv ZSGSRD 29819
17-03-17 22:02:33.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29816
17-03-17 22:02:33.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.908 -07 000000424 INF: FPGA: Recv ZSGSRD 29818
17-03-17 22:02:33.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:33.918 -07 000000482 INF: FPGA: Recv ZSGSRD 29813
17-03-17 22:02:33.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:33.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:33.928 -07 000000476 INF: FPGA: Recv ZPIEZORD 25583
17-03-17 22:02:33.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:33.938 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.395 V. Piezo Error = -9.3 V.
17-03-17 22:02:33.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29815 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29815 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29806 (-131.0 uncal um), Max = 29823 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:02:33.938 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29815, posNoise = 8, negNoise = 9
17-03-17 22:02:33.938 -07 000000610 INF: Z Motor: After move to -0.131861, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:33.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 22:02:33.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:33.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:33.938 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:33.938 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:33.938 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:33.938 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:33.938 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:33.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:33.938 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:33.938 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:33.938 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:33.938 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:33.948 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:33.948 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:33.948 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:33.948 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:33.958 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:02:33.958 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:02:33.958 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:02:33.958 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:02:33.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28981 150\n [Camera]
17-03-17 22:02:34.168 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:34.608 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:34.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:34.608 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:34.608 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:34.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:02:34.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:34.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:34.618 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:34.618 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:34.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:02:34.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28981 831
17-03-17 22:02:34.948 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:34.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:02:34.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:02:34.998 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:34.998 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:02:34.998 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:02:34.998 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:34.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:34.998 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:34.998 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:02:35.008 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:02:35.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:35.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:35.168 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:35.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:35.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:35.288 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:35.288 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:02:35.288 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:35.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:35.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:02:35.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:35.358 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:35.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28981 150' command took 3 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-17 22:02:35.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:35.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131861237017738. ------
17-03-17 22:02:35.358 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:35.358 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13845 mm
17-03-17 22:02:35.358 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:35.368 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:35.368 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:35.368 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:35.368 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:02:35.368 -07 000000482 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 22:02:35.368 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30244, sync = True, waitForSettling = False)
17-03-17 22:02:35.368 -07 000000429 INF: Z Motor: Moving to -0.138448 mm, started at -0.131861 mm, distance = -6.59 um
17-03-17 22:02:35.378 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:35.378 -07 000000627 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:02:35.388 -07 000000429 INF: FPGA: Xmit ZDACW 30244\n [Z Motor]
17-03-17 22:02:35.388 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:02:35.388 -07 000000482 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:35.388 -07 000000482 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:35.388 -07 000000482 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:02:35.388 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:02:35.398 -07 000000429 INF: FPGA: 'ZDACW 30244' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:02:35.398 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:35.398 -07 000000627 INF: FPGA: Recv ZDACR 30244
17-03-17 22:02:35.408 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:35.408 -07 000000429 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:35.408 -07 000000429 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:02:35.568 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:35.568 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:35.698 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:02:35.698 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:02:35.698 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:35.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:02:35.698 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:02:35.698 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:35.698 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:35.698 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-17 22:02:35.698 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:35.708 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:02:35.778 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:02:35.778 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:02:35.818 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:35.818 -07 000000627 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:02:35.828 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:35.828 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:35.828 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:02:35.828 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 22:02:36.778 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:36.778 -07 000000547 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:02:36.788 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:36.788 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:36.808 -07 000000482 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:36.808 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:36.808 -07 000000482 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 22:02:36.818 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138448 mm (DAC = 30244)
17-03-17 22:02:36.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.818 -07 000000482 INF: FPGA: Recv ZSGSRD 30842
17-03-17 22:02:36.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.828 -07 000000482 INF: FPGA: Recv ZSGSRD 30840
17-03-17 22:02:36.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.838 -07 000000482 INF: FPGA: Recv ZSGSRD 30846
17-03-17 22:02:36.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.848 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.848 -07 000000482 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:02:36.858 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.858 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.858 -07 000000627 INF: FPGA: Recv ZSGSRD 30842
17-03-17 22:02:36.868 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.868 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.868 -07 000000512 INF: FPGA: Recv ZSGSRD 30838
17-03-17 22:02:36.878 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.878 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.878 -07 000000429 INF: FPGA: Recv ZSGSRD 30844
17-03-17 22:02:36.888 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.888 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30840
17-03-17 22:02:36.898 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.898 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30841
17-03-17 22:02:36.908 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.908 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:36.908 -07 000000429 INF: FPGA: Recv ZSGSRD 30845
17-03-17 22:02:36.918 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.918 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:36.918 -07 000000429 INF: FPGA: Recv ZPIEZORD 26888
17-03-17 22:02:36.928 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:36.928 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.615 V. Piezo Error = -8.7 V.
17-03-17 22:02:36.928 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30842 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30842 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30838 (-137.6 uncal um), Max = 30846 (-137.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:02:36.928 -07 000000626 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30842, posNoise = 4, negNoise = 4
17-03-17 22:02:36.928 -07 000000626 INF: Z Motor: After move to -0.138448, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:36.928 -07 000000626 INF: Z Motor: Settle wait time = 1447 ms, measure time = 111 ms (allowed 150 ms), total time = 1558 ms
17-03-17 22:02:36.928 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:36.938 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:36.968 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:02:36.968 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:36.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:36.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:36.968 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:36.968 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:36.968 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:36.968 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:36.968 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:36.968 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:36.978 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:36.978 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:36.988 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:02:36.988 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:02:36.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:37.028 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:37.228 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:37.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:37.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:37.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:02:37.268 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:37.268 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:37.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:02:37.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 22:02:37.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:37.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:37.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:02:37.368 -07 000000627 INF: Autofocus start
17-03-17 22:02:37.368 -07 000000627 INF: MeasureProfile start
17-03-17 22:02:37.368 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:37.368 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:37.378 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:37.378 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:37.378 -07 000000627 INF: MeasureProfile done
17-03-17 22:02:37.378 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:02:37.378 -07 000000627 INF: Autofocus finished
17-03-17 22:02:37.578 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:37.578 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:37.578 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138458902887326. ----------
17-03-17 22:02:37.578 -07 000000610 INF: Cycle	58	Tile	8	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:37.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28751, sync = True, waitForSettling = True)
17-03-17 22:02:37.588 -07 000000610 INF: Z Motor: Moving to -0.131614 mm, started at -0.138459 mm, distance = 6.85 um
17-03-17 22:02:37.588 -07 000000610 INF: FPGA: Xmit ZDACW 28751\n [Z Motor]
17-03-17 22:02:37.588 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:02:37.598 -07 000000610 INF: FPGA: 'ZDACW 28751' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:37.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:37.598 -07 000000482 INF: FPGA: Recv ZDACR 28751
17-03-17 22:02:37.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:37.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.758 -07 000000626 INF: FPGA: Recv ZSGSRD 29777
17-03-17 22:02:37.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:37.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.768 -07 000000424 INF: FPGA: Recv ZSGSRD 29778
17-03-17 22:02:37.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29778
17-03-17 22:02:37.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.788 -07 000000012 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:02:37.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29773
17-03-17 22:02:37.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.808 -07 000000482 INF: FPGA: Recv ZSGSRD 29775
17-03-17 22:02:37.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.818 -07 000000626 INF: FPGA: Recv ZSGSRD 29777
17-03-17 22:02:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29778
17-03-17 22:02:37.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29775
17-03-17 22:02:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:37.848 -07 000000627 INF: FPGA: Recv ZSGSRD 29778
17-03-17 22:02:37.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:37.858 -07 000000541 INF: FPGA: Recv ZPIEZORD 25476
17-03-17 22:02:37.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:37.868 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.4 V.
17-03-17 22:02:37.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29777 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29773 (-130.8 uncal um), Max = 29778 (-130.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:02:37.868 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 2, negNoise = 3
17-03-17 22:02:37.868 -07 000000610 INF: Z Motor: After move to -0.131614, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:37.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:37.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:37.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:37.868 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:37.868 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:37.868 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:37.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:37.868 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:37.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:37.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:02:37.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:37.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:37.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:37.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:37.878 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:37.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:37.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:37.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:02:37.878 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:02:37.888 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:02:37.888 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:02:37.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28928 150\n [Camera]
17-03-17 22:02:37.928 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.979922,
17-03-17 22:02:38.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:38.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:38.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:38.528 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:38.528 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:38.528 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:38.528 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:38.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:38.528 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:38.528 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:38.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:02:38.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28928 828
17-03-17 22:02:38.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:38.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:02:38.908 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:02:38.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:38.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:02:38.908 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:02:38.908 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:38.908 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:38.908 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:02:38.908 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:38.918 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:02:39.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:39.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:39.088 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:39.088 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:39.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:39.088 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:39.088 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:39.088 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:02:39.088 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:39.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:02:39.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:39.278 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:39.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28928 150' command took 2 ms to send, 1382 ms to get response, and 1390 ms overall
17-03-17 22:02:39.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:39.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131610692744209. ------
17-03-17 22:02:39.278 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13794 mm
17-03-17 22:02:39.278 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:39.278 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:39.288 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:02:39.288 -07 000000541 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:02:39.288 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30133, sync = True, waitForSettling = False)
17-03-17 22:02:39.288 -07 000000627 INF: Z Motor: Moving to -0.137940 mm, started at -0.131611 mm, distance = -6.33 um
17-03-17 22:02:39.288 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:39.298 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:39.298 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:39.298 -07 000000482 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:02:39.308 -07 000000627 INF: FPGA: Xmit ZDACW 30133\n [Z Motor]
17-03-17 22:02:39.308 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:02:39.308 -07 000000541 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:39.308 -07 000000541 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:39.308 -07 000000541 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:02:39.308 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:02:39.318 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:39.318 -07 000000627 INF: FPGA: 'ZDACW 30133' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:02:39.328 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:39.338 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:39.338 -07 000000459 INF: FPGA: Recv ZDACR 30133
17-03-17 22:02:39.348 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:39.348 -07 000000627 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 22:02:39.478 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:02:39.478 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:02:39.478 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:39.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:02:39.478 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:02:39.478 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:39.478 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:39.478 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:02:39.488 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:39.488 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:02:39.518 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:39.518 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:02:39.708 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 22:02:39.708 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 22:02:39.738 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:39.748 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:02:39.758 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:39.758 -07 000000541 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:39.758 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:02:39.758 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.096 mm/sec
17-03-17 22:02:40.708 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:40.708 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:02:40.718 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:40.718 -07 000000541 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:40.738 -07 000000541 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:40.738 -07 000000541 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:02:40.738 -07 000000541 INF: Y Motor: Moved to 66.5396 after 1453 ms (table move)
17-03-17 22:02:40.738 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137940 mm (DAC = 30133)
17-03-17 22:02:40.738 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30770
17-03-17 22:02:40.758 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:40.758 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.758 -07 000000541 INF: FPGA: Recv ZSGSRD 30767
17-03-17 22:02:40.768 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.768 -07 000000626 INF: FPGA: Recv ZSGSRD 30767
17-03-17 22:02:40.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.778 -07 000000541 INF: FPGA: Recv ZSGSRD 30759
17-03-17 22:02:40.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.788 -07 000000541 INF: FPGA: Recv ZSGSRD 30763
17-03-17 22:02:40.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.798 -07 000000433 INF: FPGA: Recv ZSGSRD 30754
17-03-17 22:02:40.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.808 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30763
17-03-17 22:02:40.818 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:40.818 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.818 -07 000000459 INF: FPGA: Recv ZSGSRD 30768
17-03-17 22:02:40.828 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.828 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.828 -07 000000424 INF: FPGA: Recv ZSGSRD 30757
17-03-17 22:02:40.838 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.838 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:40.838 -07 000000424 INF: FPGA: Recv ZSGSRD 30766
17-03-17 22:02:40.848 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.848 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:40.848 -07 000000424 INF: FPGA: Recv ZPIEZORD 26795
17-03-17 22:02:40.858 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:40.858 -07 000000012 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 22:02:40.858 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30763 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30764 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30754 (-137.1 uncal um), Max = 30770 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:02:40.858 -07 000000012 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30763, posNoise = 7, negNoise = 9
17-03-17 22:02:40.858 -07 000000012 INF: Z Motor: After move to -0.137940, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:40.858 -07 000000012 INF: Z Motor: Settle wait time = 1456 ms, measure time = 111 ms (allowed 150 ms), total time = 1567 ms
17-03-17 22:02:40.858 -07 000000012 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:40.898 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 22:02:40.898 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:40.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:40.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:40.898 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:40.898 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:40.898 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:40.898 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:40.898 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:40.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:40.898 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:40.898 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:40.918 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:02:40.918 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:02:40.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:40.958 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:41.158 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:41.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:41.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:41.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:02:41.198 -07 000000415 INF: FPGA: Recv @CAMSNAP 283
17-03-17 22:02:41.208 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:41.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 22:02:41.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:02:41.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:41.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:02:41.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:02:41.308 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:41.308 -07 000000627 INF: Autofocus start
17-03-17 22:02:41.308 -07 000000627 INF: MeasureProfile start
17-03-17 22:02:41.318 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:41.318 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:41.318 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:41.318 -07 000000627 INF: MeasureProfile done
17-03-17 22:02:41.318 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:02:41.318 -07 000000627 INF: Autofocus finished
17-03-17 22:02:41.518 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:41.518 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:41.518 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137951390128127. ----------
17-03-17 22:02:41.518 -07 000000610 INF: Cycle	58	Tile	9	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:41.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28657, sync = True, waitForSettling = True)
17-03-17 22:02:41.528 -07 000000610 INF: Z Motor: Moving to -0.131183 mm, started at -0.137951 mm, distance = 6.77 um
17-03-17 22:02:41.528 -07 000000610 INF: FPGA: Xmit ZDACW 28657\n [Z Motor]
17-03-17 22:02:41.528 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:02:41.538 -07 000000610 INF: FPGA: 'ZDACW 28657' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:41.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:41.538 -07 000000569 INF: FPGA: Recv ZDACR 28657
17-03-17 22:02:41.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:41.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.698 -07 000000458 INF: FPGA: Recv ZSGSRD 29710
17-03-17 22:02:41.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:41.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.708 -07 000000424 INF: FPGA: Recv ZSGSRD 29712
17-03-17 22:02:41.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.718 -07 000000424 INF: FPGA: Recv ZSGSRD 29711
17-03-17 22:02:41.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29704
17-03-17 22:02:41.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.738 -07 000000482 INF: FPGA: Recv ZSGSRD 29712
17-03-17 22:02:41.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.748 -07 000000424 INF: FPGA: Recv ZSGSRD 29709
17-03-17 22:02:41.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.758 -07 000000458 INF: FPGA: Recv ZSGSRD 29717
17-03-17 22:02:41.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.768 -07 000000458 INF: FPGA: Recv ZSGSRD 29708
17-03-17 22:02:41.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.778 -07 000000424 INF: FPGA: Recv ZSGSRD 29711
17-03-17 22:02:41.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:41.788 -07 000000424 INF: FPGA: Recv ZSGSRD 29712
17-03-17 22:02:41.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:41.798 -07 000000458 INF: FPGA: Recv ZPIEZORD 25425
17-03-17 22:02:41.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:41.808 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.4 V.
17-03-17 22:02:41.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29711 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29704 (-130.4 uncal um), Max = 29717 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:02:41.808 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 6, negNoise = 7
17-03-17 22:02:41.808 -07 000000610 INF: Z Motor: After move to -0.131183, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:41.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:02:41.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:41.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:41.808 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:41.808 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:41.808 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:41.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:41.808 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:41.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:41.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:41.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:41.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:41.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:41.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:02:41.818 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:41.818 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:41.818 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:41.828 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:02:41.828 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:02:41.828 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:02:41.828 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:02:41.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28834 150\n [Camera]
17-03-17 22:02:41.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:42.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:42.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:42.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:42.468 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:42.468 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:42.468 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:42.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:42.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:42.478 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:42.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:42.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:02:42.658 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28834 828
17-03-17 22:02:42.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 981
17-03-17 22:02:42.848 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:02:42.848 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 22:02:42.848 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:42.848 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:02:42.848 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:02:42.848 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:42.848 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:42.858 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:42.858 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:02:42.858 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:02:43.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:43.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:43.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:43.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:43.138 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:43.138 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:43.138 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:43.138 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:02:43.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:43.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:02:43.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:43.218 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:43.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28834 150' command took 2 ms to send, 1384 ms to get response, and 1391 ms overall
17-03-17 22:02:43.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:43.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131193118954995. ------
17-03-17 22:02:43.228 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:43.228 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13793 mm
17-03-17 22:02:43.228 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:43.228 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:43.228 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:02:43.228 -07 000000502 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:02:43.228 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30130, sync = True, waitForSettling = False)
17-03-17 22:02:43.228 -07 000000424 INF: Z Motor: Moving to -0.137926 mm, started at -0.131193 mm, distance = -6.73 um
17-03-17 22:02:43.238 -07 000000424 INF: FPGA: Xmit ZDACW 30130\n [Z Motor]
17-03-17 22:02:43.238 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:43.238 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 22:02:43.248 -07 000000424 INF: FPGA: 'ZDACW 30130' command took 3 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:02:43.248 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:43.248 -07 000000482 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:02:43.258 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:43.258 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:02:43.258 -07 000000502 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:43.258 -07 000000502 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:43.258 -07 000000502 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:02:43.268 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:43.268 -07 000000429 INF: FPGA: Recv ZDACR 30130
17-03-17 22:02:43.278 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:43.278 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:02:43.278 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:02:43.298 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.020806,
17-03-17 22:02:43.458 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:43.458 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 22:02:43.538 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:02:43.538 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:02:43.538 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:43.538 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:43.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:02:43.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:02:43.548 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:43.548 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:02:43.548 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:43.548 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:02:43.648 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 22:02:43.648 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:02:43.688 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:43.688 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:02:43.698 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:43.698 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:43.698 -07 000000502 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:02:43.698 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 22:02:44.648 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:44.648 -07 000000476 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:02:44.658 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:44.658 -07 000000502 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:44.678 -07 000000502 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:44.678 -07 000000502 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:44.678 -07 000000502 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-17 22:02:44.678 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137926 mm (DAC = 30130)
17-03-17 22:02:44.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.688 -07 000000458 INF: FPGA: Recv ZSGSRD 30772
17-03-17 22:02:44.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:02:44.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.688 -07 000000429 INF: FPGA: Recv ZSGSRD 30760
17-03-17 22:02:44.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:44.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.698 -07 000000458 INF: FPGA: Recv ZSGSRD 30755
17-03-17 22:02:44.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:44.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.708 -07 000000547 INF: FPGA: Recv ZSGSRD 30763
17-03-17 22:02:44.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:44.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.718 -07 000000476 INF: FPGA: Recv ZSGSRD 30762
17-03-17 22:02:44.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:44.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.728 -07 000000424 INF: FPGA: Recv ZSGSRD 30764
17-03-17 22:02:44.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:44.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:44.738 -07 000000476 INF: FPGA: Recv ZSGSRD 30765
17-03-17 22:02:44.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:44.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:45.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30755
17-03-17 22:02:45.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 970 ms to get response, and 980 ms overall
17-03-17 22:02:45.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:45.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30768
17-03-17 22:02:45.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:45.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:45.738 -07 000000482 INF: FPGA: Recv ZSGSRD 30766
17-03-17 22:02:45.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:45.748 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:45.748 -07 000000502 INF: FPGA: Recv ZPIEZORD 26791
17-03-17 22:02:45.758 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:45.758 -07 000000475 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 22:02:45.758 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30763 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30764 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30755 (-137.1 uncal um), Max = 30772 (-137.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:02:45.758 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30763, posNoise = 9, negNoise = 8
17-03-17 22:02:45.758 -07 000000475 INF: Z Motor: After move to -0.137926, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:45.758 -07 000000475 INF: Z Motor: Settle wait time = 1451 ms, measure time = 1072 ms (allowed 150 ms), total time = 2523 ms
17-03-17 22:02:45.758 -07 000000475 INF: Z Motor: Warning: Actual position measuring time = 1072 ms, longer than max expected time of 150 ms
17-03-17 22:02:45.758 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2529 ms
17-03-17 22:02:45.758 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:45.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:45.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:45.758 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:45.758 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:45.758 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:45.758 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:45.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:02:45.768 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:45.768 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:45.768 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:45.778 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:02:45.778 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:02:45.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:45.818 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:46.018 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:46.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:46.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:46.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:02:46.058 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:46.058 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:46.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:02:46.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:02:46.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:46.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:46.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:02:46.158 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:46.158 -07 000000482 INF: Autofocus start
17-03-17 22:02:46.158 -07 000000482 INF: MeasureProfile start
17-03-17 22:02:46.158 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:46.168 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:46.168 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:46.168 -07 000000482 INF: MeasureProfile done
17-03-17 22:02:46.168 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:02:46.168 -07 000000482 INF: Autofocus finished
17-03-17 22:02:46.368 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:46.368 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:46.368 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137951390128127. ----------
17-03-17 22:02:46.368 -07 000000610 INF: Cycle	58	Tile	10	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:46.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28638, sync = True, waitForSettling = True)
17-03-17 22:02:46.378 -07 000000610 INF: Z Motor: Moving to -0.131096 mm, started at -0.137951 mm, distance = 6.86 um
17-03-17 22:02:46.378 -07 000000610 INF: FPGA: Xmit ZDACW 28638\n [Z Motor]
17-03-17 22:02:46.378 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:02:46.388 -07 000000610 INF: FPGA: 'ZDACW 28638' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:46.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:46.388 -07 000000458 INF: FPGA: Recv ZDACR 28638
17-03-17 22:02:46.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:46.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.548 -07 000000547 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:02:46.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:46.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.558 -07 000000429 INF: FPGA: Recv ZSGSRD 29700
17-03-17 22:02:46.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.568 -07 000000502 INF: FPGA: Recv ZSGSRD 29694
17-03-17 22:02:46.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.578 -07 000000626 INF: FPGA: Recv ZSGSRD 29702
17-03-17 22:02:46.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.588 -07 000000626 INF: FPGA: Recv ZSGSRD 29692
17-03-17 22:02:46.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.598 -07 000000482 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:02:46.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.608 -07 000000458 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:02:46.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.618 -07 000000547 INF: FPGA: Recv ZSGSRD 29695
17-03-17 22:02:46.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.628 -07 000000626 INF: FPGA: Recv ZSGSRD 29700
17-03-17 22:02:46.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:46.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:02:46.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:46.648 -07 000000482 INF: FPGA: Recv ZPIEZORD 25392
17-03-17 22:02:46.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:46.658 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 22:02:46.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29697 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29697 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29692 (-130.3 uncal um), Max = 29702 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:02:46.658 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29697, posNoise = 5, negNoise = 5
17-03-17 22:02:46.658 -07 000000610 INF: Z Motor: After move to -0.131096, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:46.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:46.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:46.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:46.658 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:46.658 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:46.658 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:46.658 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:46.658 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:46.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:46.658 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:02:46.658 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:46.668 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:02:46.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:46.668 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:46.668 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:46.668 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:02:46.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:46.678 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:02:46.678 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:02:46.678 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:02:46.678 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:02:46.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28815 150\n [Camera]
17-03-17 22:02:46.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:46.938 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:47.318 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:47.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:47.318 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:47.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:47.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:47.328 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:47.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:47.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:47.328 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:47.328 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:02:47.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28815 830
17-03-17 22:02:47.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:47.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:02:47.718 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:02:47.718 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:47.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:02:47.728 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:02:47.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:47.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:47.728 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:02:47.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 111 ms.
17-03-17 22:02:47.848 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 22:02:47.878 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:47.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:47.878 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:47.878 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:47.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:47.878 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:47.878 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:47.878 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:02:47.888 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:47.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:02:48.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:02:48.068 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:48.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28815 150' command took 2 ms to send, 1386 ms to get response, and 1391 ms overall
17-03-17 22:02:48.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:48.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.13110317998501. ------
17-03-17 22:02:48.078 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:48.078 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13762 mm
17-03-17 22:02:48.078 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:48.078 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:48.078 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30064, sync = True, waitForSettling = False)
17-03-17 22:02:48.078 -07 000000482 INF: Z Motor: Moving to -0.137624 mm, started at -0.131103 mm, distance = -6.52 um
17-03-17 22:02:48.078 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:02:48.078 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:02:48.088 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:48.088 -07 000000482 INF: FPGA: Xmit ZDACW 30064\n [Z Motor]
17-03-17 22:02:48.088 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 22:02:48.098 -07 000000482 INF: FPGA: 'ZDACW 30064' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:02:48.098 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:48.098 -07 000000429 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:02:48.108 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:48.108 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:02:48.108 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:48.108 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:48.108 -07 000000626 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:02:48.118 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:48.118 -07 000000429 INF: FPGA: Recv ZDACR 30064
17-03-17 22:02:48.128 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:48.128 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:48.128 -07 000000482 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:02:48.278 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:02:48.278 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:02:48.278 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:48.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:02:48.278 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:02:48.278 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:48.288 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:48.288 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:02:48.288 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:48.288 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:02:48.308 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:48.308 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:02:48.508 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:02:48.508 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 22:02:48.538 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:48.548 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:02:48.548 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:02:48.548 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:48.548 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:02:48.548 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-17 22:02:48.658 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.016692,
17-03-17 22:02:49.498 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:49.498 -07 000000547 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:02:49.508 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:49.508 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:49.528 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:49.528 -07 000000626 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:49.528 -07 000000626 INF: Y Motor: Moved to 68.2051 after 1444 ms (table move)
17-03-17 22:02:49.528 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137624 mm (DAC = 30064)
17-03-17 22:02:49.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.528 -07 000000541 INF: FPGA: Recv ZSGSRD 30710
17-03-17 22:02:49.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:49.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.538 -07 000000547 INF: FPGA: Recv ZSGSRD 30716
17-03-17 22:02:49.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.548 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.548 -07 000000541 INF: FPGA: Recv ZSGSRD 30713
17-03-17 22:02:49.558 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.558 -07 000000429 INF: FPGA: Recv ZSGSRD 30716
17-03-17 22:02:49.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.578 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.578 -07 000000486 INF: FPGA: Recv ZSGSRD 30709
17-03-17 22:02:49.588 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:02:49.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.588 -07 000000429 INF: FPGA: Recv ZSGSRD 30706
17-03-17 22:02:49.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.598 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.598 -07 000000541 INF: FPGA: Recv ZSGSRD 30707
17-03-17 22:02:49.608 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.608 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.608 -07 000000429 INF: FPGA: Recv ZSGSRD 30713
17-03-17 22:02:49.618 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.618 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.618 -07 000000486 INF: FPGA: Recv ZSGSRD 30713
17-03-17 22:02:49.628 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.628 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:49.628 -07 000000541 INF: FPGA: Recv ZSGSRD 30720
17-03-17 22:02:49.638 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.638 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:49.638 -07 000000012 INF: FPGA: Recv ZPIEZORD 26778
17-03-17 22:02:49.648 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:49.648 -07 000000458 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -8.7 V.
17-03-17 22:02:49.648 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30712 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30713 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30706 (-136.8 uncal um), Max = 30720 (-136.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:02:49.648 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30712, posNoise = 8, negNoise = 6
17-03-17 22:02:49.648 -07 000000458 INF: Z Motor: After move to -0.137624, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:49.648 -07 000000458 INF: Z Motor: Settle wait time = 1448 ms, measure time = 114 ms (allowed 150 ms), total time = 1562 ms
17-03-17 22:02:49.648 -07 000000458 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:49.688 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 22:02:49.688 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:49.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:49.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:49.688 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:49.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:49.688 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:49.688 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:49.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:49.688 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:49.688 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:49.688 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:49.698 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:02:49.698 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:02:49.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:49.748 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:49.948 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:49.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:49.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:49.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:02:49.988 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:49.988 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:49.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 22:02:50.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:02:50.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:50.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:50.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:02:50.088 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:50.088 -07 000000429 INF: Autofocus start
17-03-17 22:02:50.088 -07 000000429 INF: MeasureProfile start
17-03-17 22:02:50.088 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:50.098 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:02:50.098 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:50.098 -07 000000429 INF: MeasureProfile done
17-03-17 22:02:50.098 -07 000000429 INF: X=-78  Z correction [um]=-0.3830929
17-03-17 22:02:50.098 -07 000000429 INF: Autofocus finished
17-03-17 22:02:50.298 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:50.298 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:50.298 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137623755308898. ----------
17-03-17 22:02:50.298 -07 000000610 INF: Cycle	58	Tile	11	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:50.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28493, sync = True, waitForSettling = True)
17-03-17 22:02:50.308 -07 000000610 INF: Z Motor: Moving to -0.130433 mm, started at -0.137624 mm, distance = 7.19 um
17-03-17 22:02:50.308 -07 000000610 INF: FPGA: Xmit ZDACW 28493\n [Z Motor]
17-03-17 22:02:50.308 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 22:02:50.318 -07 000000610 INF: FPGA: 'ZDACW 28493' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:50.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:50.318 -07 000000433 INF: FPGA: Recv ZDACR 28493
17-03-17 22:02:50.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.478 -07 000000502 INF: FPGA: Recv ZSGSRD 29592
17-03-17 22:02:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.488 -07 000000502 INF: FPGA: Recv ZSGSRD 29594
17-03-17 22:02:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.498 -07 000000429 INF: FPGA: Recv ZSGSRD 29597
17-03-17 22:02:50.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.508 -07 000000547 INF: FPGA: Recv ZSGSRD 29598
17-03-17 22:02:50.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.518 -07 000000547 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:02:50.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.528 -07 000000547 INF: FPGA: Recv ZSGSRD 29590
17-03-17 22:02:50.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.538 -07 000000547 INF: FPGA: Recv ZSGSRD 29591
17-03-17 22:02:50.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.548 -07 000000429 INF: FPGA: Recv ZSGSRD 29597
17-03-17 22:02:50.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.558 -07 000000433 INF: FPGA: Recv ZSGSRD 29593
17-03-17 22:02:50.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:50.568 -07 000000502 INF: FPGA: Recv ZSGSRD 29585
17-03-17 22:02:50.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:50.578 -07 000000547 INF: FPGA: Recv ZPIEZORD 25291
17-03-17 22:02:50.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:50.588 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.4 V.
17-03-17 22:02:50.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29593 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29592 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29585 (-129.6 uncal um), Max = 29598 (-129.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:02:50.588 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29593, posNoise = 5, negNoise = 8
17-03-17 22:02:50.588 -07 000000610 INF: Z Motor: After move to -0.130433, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:50.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:50.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:50.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:50.588 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:50.588 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:50.588 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:50.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:50.588 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:50.588 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:50.588 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:50.588 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:50.588 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:50.588 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:50.598 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:50.598 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:50.598 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:50.598 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:50.598 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:02:50.608 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:02:50.608 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:02:50.608 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:02:50.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28669 150\n [Camera]
17-03-17 22:02:50.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:51.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:51.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:51.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:51.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:51.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:51.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:51.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:51.258 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:51.258 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:51.258 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 22:02:51.448 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28669 828
17-03-17 22:02:51.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:51.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:02:51.658 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:02:51.658 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:51.658 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:02:51.658 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:02:51.658 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:51.658 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:51.658 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:02:51.658 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:51.668 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:02:51.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:51.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:51.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:51.808 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:51.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 22:02:51.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:51.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:51.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:51.818 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:51.818 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:02:51.938 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:51.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:02:51.998 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:51.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28669 150' command took 2 ms to send, 1388 ms to get response, and 1394 ms overall
17-03-17 22:02:52.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:52.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130435061922267. ------
17-03-17 22:02:52.008 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:52.008 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13710 mm
17-03-17 22:02:52.008 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:52.008 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:02:52.008 -07 000000429 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:02:52.008 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29949, sync = True, waitForSettling = False)
17-03-17 22:02:52.008 -07 000000433 INF: Z Motor: Moving to -0.137098 mm, started at -0.130435 mm, distance = -6.66 um
17-03-17 22:02:52.008 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:52.018 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:02:52.018 -07 000000433 INF: FPGA: Xmit ZDACW 29949\n [Z Motor]
17-03-17 22:02:52.018 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:02:52.028 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:52.028 -07 000000433 INF: FPGA: 'ZDACW 29949' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:52.028 -07 000000512 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:02:52.038 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:52.038 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:02:52.038 -07 000000429 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:52.038 -07 000000429 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:52.038 -07 000000429 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:02:52.048 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:52.048 -07 000000512 INF: FPGA: Recv ZDACR 29949
17-03-17 22:02:52.058 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:52.058 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:52.058 -07 000000433 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:02:52.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:02:52.208 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:02:52.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:52.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:02:52.218 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:02:52.218 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:52.218 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:52.218 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:02:52.218 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:02:52.228 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:02:52.238 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:52.238 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:02:52.428 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 22:02:52.428 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:02:52.468 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:52.478 -07 000000486 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:02:52.478 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:52.478 -07 000000429 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:52.478 -07 000000429 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:02:52.478 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-17 22:02:53.428 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:53.428 -07 000000486 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:02:53.438 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:53.438 -07 000000429 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:53.468 -07 000000429 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:53.468 -07 000000429 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:53.468 -07 000000429 INF: Y Motor: Moved to 69.0273 after 1457 ms (table move)
17-03-17 22:02:53.468 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137098 mm (DAC = 29949)
17-03-17 22:02:53.468 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.478 -07 000000433 INF: FPGA: Recv ZSGSRD 30631
17-03-17 22:02:53.478 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:02:53.478 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.478 -07 000000502 INF: FPGA: Recv ZSGSRD 30627
17-03-17 22:02:53.488 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:53.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.488 -07 000000478 INF: FPGA: Recv ZSGSRD 30631
17-03-17 22:02:53.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.498 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.498 -07 000000627 INF: FPGA: Recv ZSGSRD 30635
17-03-17 22:02:53.508 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.508 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.508 -07 000000541 INF: FPGA: Recv ZSGSRD 30630
17-03-17 22:02:53.518 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.518 -07 000000502 INF: FPGA: Recv ZSGSRD 30629
17-03-17 22:02:53.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.528 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30626
17-03-17 22:02:53.538 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.538 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.538 -07 000000541 INF: FPGA: Recv ZSGSRD 30627
17-03-17 22:02:53.548 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.548 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.548 -07 000000478 INF: FPGA: Recv ZSGSRD 30635
17-03-17 22:02:53.558 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.558 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:53.558 -07 000000541 INF: FPGA: Recv ZSGSRD 30629
17-03-17 22:02:53.568 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.568 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:53.568 -07 000000478 INF: FPGA: Recv ZPIEZORD 26666
17-03-17 22:02:53.578 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:53.578 -07 000000459 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -8.7 V.
17-03-17 22:02:53.578 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30630 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30630 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30626 (-136.3 uncal um), Max = 30635 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:02:53.578 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30630, posNoise = 5, negNoise = 4
17-03-17 22:02:53.578 -07 000000459 INF: Z Motor: After move to -0.137098, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:53.578 -07 000000459 INF: Z Motor: Settle wait time = 1458 ms, measure time = 103 ms (allowed 150 ms), total time = 1561 ms
17-03-17 22:02:53.578 -07 000000459 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:53.628 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 22:02:53.628 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:53.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:53.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:53.628 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:53.628 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:53.628 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:53.628 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:53.628 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:02:53.628 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:53.638 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:53.638 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:53.638 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:02:53.638 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:02:53.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:53.688 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:53.888 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:53.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:53.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:53.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1447204352, 0x0, 559484976) start.
17-03-17 22:02:53.928 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:53.928 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:53.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:02:54.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1447204352, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:02:54.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:54.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:02:54.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:02:54.018 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.011254,
17-03-17 22:02:54.028 -07 000000541 INF: Autofocus start
17-03-17 22:02:54.028 -07 000000541 INF: MeasureProfile start
17-03-17 22:02:54.048 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:54.048 -07 000000541 INF: MeasureProfile done
17-03-17 22:02:54.048 -07 000000541 INF: X=-20  Z correction [um]=-0.1007593
17-03-17 22:02:54.048 -07 000000541 INF: Autofocus finished
17-03-17 22:02:54.048 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:54.058 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:02:54.058 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:54.258 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:54.258 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:02:54.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137096969913273. ----------
17-03-17 22:02:54.258 -07 000000610 INF: Cycle	58	Tile	12	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:54.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28439, sync = True, waitForSettling = True)
17-03-17 22:02:54.268 -07 000000610 INF: Z Motor: Moving to -0.130185 mm, started at -0.137097 mm, distance = 6.91 um
17-03-17 22:02:54.268 -07 000000610 INF: FPGA: Xmit ZDACW 28439\n [Z Motor]
17-03-17 22:02:54.268 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:02:54.278 -07 000000610 INF: FPGA: 'ZDACW 28439' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:02:54.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:54.278 -07 000000424 INF: FPGA: Recv ZDACR 28439
17-03-17 22:02:54.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:02:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:02:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29553
17-03-17 22:02:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.468 -07 000000424 INF: FPGA: Recv ZSGSRD 29553
17-03-17 22:02:54.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.478 -07 000000424 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:02:54.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.488 -07 000000512 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:02:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:02:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29553
17-03-17 22:02:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.518 -07 000000424 INF: FPGA: Recv ZSGSRD 29552
17-03-17 22:02:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:54.528 -07 000000512 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:02:54.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:54.538 -07 000000627 INF: FPGA: Recv ZPIEZORD 25261
17-03-17 22:02:54.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:54.548 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.4 V.
17-03-17 22:02:54.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29555 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29556 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29552 (-129.4 uncal um), Max = 29557 (-129.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:02:54.548 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29555, posNoise = 2, negNoise = 3
17-03-17 22:02:54.548 -07 000000610 INF: Z Motor: After move to -0.130185, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:54.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:02:54.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:54.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:54.548 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:54.548 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:54.548 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:54.548 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:54.548 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:54.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:54.548 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 22:02:54.548 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:54.548 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:54.548 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:54.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:54.558 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:54.558 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:02:54.558 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:54.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:02:54.568 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:02:54.568 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:02:54.568 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:02:54.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28616 150\n [Camera]
17-03-17 22:02:54.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:02:55.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:02:55.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:02:55.218 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:55.218 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:55.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 22:02:55.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:02:55.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:02:55.218 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:55.348 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:55.348 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:02:55.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28616 828
17-03-17 22:02:55.558 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:55.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:02:55.608 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:02:55.608 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:55.618 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:55.618 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:02:55.728 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:02:55.728 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:02:55.728 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:55.728 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:02:55.738 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 22:02:55.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:55.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:55.778 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:55.778 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:55.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:55.778 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:55.788 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:55.788 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:55.788 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:55.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:02:55.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:02:55.968 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:02:55.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28616 150' command took 2 ms to send, 1382 ms to get response, and 1391 ms overall
17-03-17 22:02:55.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:02:55.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.13019094186088. ------
17-03-17 22:02:55.968 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13666 mm
17-03-17 22:02:55.968 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:02:55.968 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:55.978 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:55.978 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:02:55.978 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 22:02:55.978 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29852, sync = True, waitForSettling = False)
17-03-17 22:02:55.978 -07 000000415 INF: Z Motor: Moving to -0.136654 mm, started at -0.130191 mm, distance = -6.46 um
17-03-17 22:02:55.988 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:55.988 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:02:55.988 -07 000000482 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:02:55.998 -07 000000415 INF: FPGA: Xmit ZDACW 29852\n [Z Motor]
17-03-17 22:02:55.998 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:02:55.998 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:55.998 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:02:55.998 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:02:55.998 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:02:56.008 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:02:56.008 -07 000000415 INF: FPGA: 'ZDACW 29852' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:02:56.018 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:02:56.028 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:56.028 -07 000000458 INF: FPGA: Recv ZDACR 29852
17-03-17 22:02:56.038 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:02:56.038 -07 000000415 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:02:56.188 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:02:56.188 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:02:56.188 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:56.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:02:56.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:02:56.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:56.188 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:56.188 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 417 ms.
17-03-17 22:02:56.188 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:02:56.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-17 22:02:56.208 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:02:56.208 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:02:56.388 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 22:02:56.388 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:02:56.428 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:56.428 -07 000000475 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:02:56.438 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:02:56.438 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:56.438 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:02:56.438 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 22:02:56.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:02:56.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:02:57.388 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:02:57.388 -07 000000627 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:02:57.398 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:02:57.398 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:02:57.418 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:02:57.418 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:02:57.418 -07 000000626 INF: Y Motor: Moved to 69.8633 after 1439 ms (table move)
17-03-17 22:02:57.418 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136654 mm (DAC = 29852)
17-03-17 22:02:57.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.428 -07 000000482 INF: FPGA: Recv ZSGSRD 30566
17-03-17 22:02:57.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:02:57.428 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.428 -07 000000476 INF: FPGA: Recv ZSGSRD 30558
17-03-17 22:02:57.438 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:02:57.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.438 -07 000000569 INF: FPGA: Recv ZSGSRD 30567
17-03-17 22:02:57.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.448 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.448 -07 000000475 INF: FPGA: Recv ZSGSRD 30566
17-03-17 22:02:57.458 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.458 -07 000000458 INF: FPGA: Recv ZSGSRD 30565
17-03-17 22:02:57.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.468 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.468 -07 000000569 INF: FPGA: Recv ZSGSRD 30561
17-03-17 22:02:57.478 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.478 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.478 -07 000000415 INF: FPGA: Recv ZSGSRD 30556
17-03-17 22:02:57.488 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.488 -07 000000512 INF: FPGA: Recv ZSGSRD 30556
17-03-17 22:02:57.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.498 -07 000000476 INF: FPGA: Recv ZSGSRD 30563
17-03-17 22:02:57.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.508 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:57.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30559
17-03-17 22:02:57.518 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.518 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:57.518 -07 000000482 INF: FPGA: Recv ZPIEZORD 26606
17-03-17 22:02:57.528 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:57.528 -07 000000424 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.555 V. Piezo Error = -8.7 V.
17-03-17 22:02:57.528 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30562 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30562 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30556 (-135.8 uncal um), Max = 30567 (-135.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:02:57.528 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30562, posNoise = 5, negNoise = 6
17-03-17 22:02:57.528 -07 000000424 INF: Z Motor: After move to -0.136654, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:57.528 -07 000000424 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:02:57.528 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:02:57.578 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:02:57.578 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:02:57.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:57.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:57.578 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:57.578 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:57.578 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:02:57.578 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:57.578 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:02:57.578 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:02:57.588 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:02:57.588 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:02:57.598 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:02:57.598 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:02:57.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:02:57.648 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:02:57.848 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:02:57.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:02:57.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:02:57.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:02:57.888 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:02:57.888 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:02:57.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 22:02:57.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:02:57.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:57.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:02:57.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:02:58.098 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:02:58.098 -07 000000626 INF: Autofocus start
17-03-17 22:02:58.098 -07 000000626 INF: MeasureProfile start
17-03-17 22:02:58.108 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:02:58.108 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 22:02:58.108 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:02:58.118 -07 000000626 INF: MeasureProfile done
17-03-17 22:02:58.118 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:02:58.118 -07 000000626 INF: Autofocus finished
17-03-17 22:02:58.308 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:02:58.308 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 22:02:58.318 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136660123487633. ----------
17-03-17 22:02:58.318 -07 000000610 INF: Cycle	58	Tile	13	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:02:58.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28377, sync = True, waitForSettling = True)
17-03-17 22:02:58.318 -07 000000610 INF: Z Motor: Moving to -0.129902 mm, started at -0.136660 mm, distance = 6.76 um
17-03-17 22:02:58.318 -07 000000610 INF: FPGA: Xmit ZDACW 28377\n [Z Motor]
17-03-17 22:02:58.318 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:02:58.328 -07 000000610 INF: FPGA: 'ZDACW 28377' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:02:58.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:02:58.328 -07 000000458 INF: FPGA: Recv ZDACR 28377
17-03-17 22:02:58.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:02:58.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.488 -07 000000415 INF: FPGA: Recv ZSGSRD 29506
17-03-17 22:02:58.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.498 -07 000000626 INF: FPGA: Recv ZSGSRD 29508
17-03-17 22:02:58.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.508 -07 000000626 INF: FPGA: Recv ZSGSRD 29508
17-03-17 22:02:58.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.518 -07 000000458 INF: FPGA: Recv ZSGSRD 29506
17-03-17 22:02:58.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29514
17-03-17 22:02:58.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.538 -07 000000626 INF: FPGA: Recv ZSGSRD 29516
17-03-17 22:02:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29511
17-03-17 22:02:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.558 -07 000000458 INF: FPGA: Recv ZSGSRD 29506
17-03-17 22:02:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.568 -07 000000458 INF: FPGA: Recv ZSGSRD 29509
17-03-17 22:02:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:02:58.578 -07 000000415 INF: FPGA: Recv ZSGSRD 29512
17-03-17 22:02:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:02:58.588 -07 000000415 INF: FPGA: Recv ZPIEZORD 25213
17-03-17 22:02:58.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:02:58.598 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.4 V.
17-03-17 22:02:58.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29510 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29506 (-129.1 uncal um), Max = 29516 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:02:58.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29510, posNoise = 6, negNoise = 4
17-03-17 22:02:58.598 -07 000000610 INF: Z Motor: After move to -0.129902, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:02:58.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:02:58.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:02:58.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:02:58.598 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:02:58.598 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:02:58.598 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:02:58.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:02:58.598 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:02:58.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:02:58.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:02:58.598 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:02:58.598 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:02:58.598 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:02:58.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:02:58.608 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:02:58.608 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:02:58.608 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:02:58.618 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:02:58.618 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:02:58.618 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:02:58.618 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:02:58.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28553 150\n [Camera]
17-03-17 22:02:58.818 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 22:02:59.258 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:02:59.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:02:59.258 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:59.268 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:02:59.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:02:59.268 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:59.268 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:59.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:02:59.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:59.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:02:59.398 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.008536,
17-03-17 22:02:59.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28553 828
17-03-17 22:02:59.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:02:59.648 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:02:59.648 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:02:59.648 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:59.648 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:59.648 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:02:59.648 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:02:59.648 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:02:59.658 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:02:59.658 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:02:59.658 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:02:59.818 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:02:59.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:02:59.818 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:02:59.818 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:02:59.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:02:59.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:02:59.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:02:59.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:02:59.818 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:02:59.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:03:00.008 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1385
17-03-17 22:03:00.008 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:00.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28553 150' command took 2 ms to send, 1386 ms to get response, and 1392 ms overall
17-03-17 22:03:00.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:03:00.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129901852314501. ------
17-03-17 22:03:00.018 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:00.018 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13632 mm
17-03-17 22:03:00.018 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:03:00.018 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:00.018 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:03:00.018 -07 000000459 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:03:00.018 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29780, sync = True, waitForSettling = False)
17-03-17 22:03:00.018 -07 000000429 INF: Z Motor: Moving to -0.136324 mm, started at -0.129902 mm, distance = -6.42 um
17-03-17 22:03:00.028 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:00.028 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:00.028 -07 000000458 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:03:00.038 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:03:00.038 -07 000000459 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:00.038 -07 000000429 INF: FPGA: Xmit ZDACW 29780\n [Z Motor]
17-03-17 22:03:00.038 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:03:00.038 -07 000000459 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:03:00.038 -07 000000459 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:03:00.048 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:03:00.048 -07 000000429 INF: FPGA: 'ZDACW 29780' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:03:00.058 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:03:00.068 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:00.068 -07 000000541 INF: FPGA: Recv ZDACR 29780
17-03-17 22:03:00.078 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:03:00.078 -07 000000429 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:03:00.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:03:00.208 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:03:00.208 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:00.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:03:00.208 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:03:00.208 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:00.208 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:00.208 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:03:00.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:03:00.218 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:03:00.248 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:03:00.248 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:03:00.428 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 22:03:00.428 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:03:00.468 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:00.478 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:03:00.478 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:03:00.478 -07 000000459 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:00.478 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:03:00.478 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 22:03:01.428 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:01.428 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:03:01.438 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:01.438 -07 000000459 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:01.458 -07 000000459 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:01.458 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:03:01.458 -07 000000459 INF: Y Motor: Moved to 70.6885 after 1438 ms (table move)
17-03-17 22:03:01.458 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136324 mm (DAC = 29780)
17-03-17 22:03:01.458 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.468 -07 000000478 INF: FPGA: Recv ZSGSRD 30513
17-03-17 22:03:01.478 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:01.478 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.478 -07 000000541 INF: FPGA: Recv ZSGSRD 30510
17-03-17 22:03:01.488 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.488 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.488 -07 000000478 INF: FPGA: Recv ZSGSRD 30513
17-03-17 22:03:01.498 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.498 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.498 -07 000000547 INF: FPGA: Recv ZSGSRD 30507
17-03-17 22:03:01.508 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.508 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.508 -07 000000415 INF: FPGA: Recv ZSGSRD 30508
17-03-17 22:03:01.518 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.518 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.518 -07 000000429 INF: FPGA: Recv ZSGSRD 30508
17-03-17 22:03:01.528 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.528 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.528 -07 000000429 INF: FPGA: Recv ZSGSRD 30506
17-03-17 22:03:01.538 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.538 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.538 -07 000000458 INF: FPGA: Recv ZSGSRD 30510
17-03-17 22:03:01.548 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.548 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.548 -07 000000429 INF: FPGA: Recv ZSGSRD 30511
17-03-17 22:03:01.558 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.558 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:01.558 -07 000000458 INF: FPGA: Recv ZSGSRD 30509
17-03-17 22:03:01.568 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.568 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:01.568 -07 000000429 INF: FPGA: Recv ZPIEZORD 26558
17-03-17 22:03:01.578 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:01.578 -07 000000486 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -8.7 V.
17-03-17 22:03:01.578 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30510 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30510 (-135.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30506 (-135.5 uncal um), Max = 30513 (-135.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:03:01.578 -07 000000486 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30510, posNoise = 3, negNoise = 4
17-03-17 22:03:01.578 -07 000000486 INF: Z Motor: After move to -0.136324, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:01.578 -07 000000486 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:03:01.578 -07 000000486 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:03:01.618 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:03:01.618 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:03:01.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:01.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:01.618 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:03:01.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:01.618 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:01.618 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:01.618 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:01.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:03:01.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:01.628 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:03:01.628 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:03:01.628 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:03:01.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:03:01.678 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:03:01.878 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:03:01.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:03:01.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:03:01.988 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:03:01.988 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 22:03:01.988 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:01.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) start.
17-03-17 22:03:01.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 349 ms to get response, and 358 ms overall
17-03-17 22:03:02.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 579324120, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:03:02.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:02.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:03:02.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 228 ms.
17-03-17 22:03:02.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:02.198 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:02.198 -07 000000486 INF: Autofocus start
17-03-17 22:03:02.198 -07 000000486 INF: MeasureProfile start
17-03-17 22:03:02.198 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:02.208 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:03:02.208 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:03:02.208 -07 000000486 INF: MeasureProfile done
17-03-17 22:03:02.208 -07 000000486 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:03:02.208 -07 000000486 INF: Autofocus finished
17-03-17 22:03:02.408 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:03:02.408 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:03:02.408 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136326064456262. ----------
17-03-17 22:03:02.418 -07 000000610 INF: Cycle	58	Tile	14	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:03:02.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28275, sync = True, waitForSettling = True)
17-03-17 22:03:02.418 -07 000000610 INF: Z Motor: Moving to -0.129435 mm, started at -0.136326 mm, distance = 6.89 um
17-03-17 22:03:02.418 -07 000000610 INF: FPGA: Xmit ZDACW 28275\n [Z Motor]
17-03-17 22:03:02.418 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:03:02.428 -07 000000610 INF: FPGA: 'ZDACW 28275' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:02.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:02.428 -07 000000458 INF: FPGA: Recv ZDACR 28275
17-03-17 22:03:02.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:03:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29440
17-03-17 22:03:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.598 -07 000000486 INF: FPGA: Recv ZSGSRD 29436
17-03-17 22:03:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.608 -07 000000486 INF: FPGA: Recv ZSGSRD 29434
17-03-17 22:03:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.618 -07 000000429 INF: FPGA: Recv ZSGSRD 29445
17-03-17 22:03:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29444
17-03-17 22:03:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29436
17-03-17 22:03:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.648 -07 000000486 INF: FPGA: Recv ZSGSRD 29432
17-03-17 22:03:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.658 -07 000000486 INF: FPGA: Recv ZSGSRD 29436
17-03-17 22:03:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29438
17-03-17 22:03:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:02.678 -07 000000486 INF: FPGA: Recv ZSGSRD 29440
17-03-17 22:03:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:02.688 -07 000000433 INF: FPGA: Recv ZPIEZORD 25191
17-03-17 22:03:02.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:02.698 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.3 V.
17-03-17 22:03:02.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29438 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29437 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29432 (-128.6 uncal um), Max = 29445 (-128.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:03:02.698 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29438, posNoise = 7, negNoise = 6
17-03-17 22:03:02.698 -07 000000610 INF: Z Motor: After move to -0.129435, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:02.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:03:02.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:02.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:02.698 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:02.698 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:02.698 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:03:02.698 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:03:02.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:03:02.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:02.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:03:02.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:03:02.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:02.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:03:02.708 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:03:02.708 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:03:02.708 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:03:02.708 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:03:02.718 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:03:02.718 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:03:02.718 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:03:02.718 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:03:02.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28451 150\n [Camera]
17-03-17 22:03:02.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:03:03.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:03:03.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:03:03.358 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:03.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:03:03.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:03:03.368 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:03.368 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:03.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:03:03.368 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:03.368 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:03:03.548 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28451 828
17-03-17 22:03:03.698 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:03:03.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:03:03.758 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:03:03.758 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:03.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 22:03:03.758 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:03:03.758 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:03.758 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:03.768 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:03.768 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:03:03.768 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:03:03.918 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:03:03.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:03:03.918 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:03.918 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:03.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:03:03.918 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:03:03.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:03:03.918 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:03.918 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:03.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:03:04.108 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:03:04.108 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:04.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28451 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-17 22:03:04.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:03:04.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129439309040294. ------
17-03-17 22:03:04.118 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13609 mm
17-03-17 22:03:04.118 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:03:04.118 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:04.118 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29729, sync = True, waitForSettling = False)
17-03-17 22:03:04.118 -07 000000012 INF: Z Motor: Moving to -0.136091 mm, started at -0.129439 mm, distance = -6.65 um
17-03-17 22:03:04.118 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:03:04.118 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 22:03:04.118 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:04.128 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:03:04.128 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:04.128 -07 000000476 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:03:04.138 -07 000000012 INF: FPGA: Xmit ZDACW 29729\n [Z Motor]
17-03-17 22:03:04.138 -07 000000512 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:03:04.138 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:04.138 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 22:03:04.138 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:03:04.138 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:03:04.148 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:03:04.148 -07 000000012 INF: FPGA: 'ZDACW 29729' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:03:04.158 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:03:04.168 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:04.168 -07 000000458 INF: FPGA: Recv ZDACR 29729
17-03-17 22:03:04.178 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:03:04.178 -07 000000012 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:03:04.308 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:03:04.308 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:03:04.308 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:04.308 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:03:04.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:03:04.308 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:03:04.308 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:04.318 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:04.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:03:04.318 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:03:04.348 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:03:04.348 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:03:04.528 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 22:03:04.528 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 22:03:04.568 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:04.578 -07 000000486 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:03:04.578 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:03:04.578 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:04.578 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:03:04.578 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 22:03:04.758 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.001704,
17-03-17 22:03:05.528 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:05.528 -07 000000486 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:03:05.538 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.538 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:05.558 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:05.558 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:03:05.558 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1437 ms (table move)
17-03-17 22:03:05.558 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136091 mm (DAC = 29729)
17-03-17 22:03:05.558 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.568 -07 000000458 INF: FPGA: Recv ZSGSRD 30481
17-03-17 22:03:05.568 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:03:05.568 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.568 -07 000000458 INF: FPGA: Recv ZSGSRD 30469
17-03-17 22:03:05.578 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:03:05.578 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.578 -07 000000429 INF: FPGA: Recv ZSGSRD 30471
17-03-17 22:03:05.588 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.588 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.588 -07 000000429 INF: FPGA: Recv ZSGSRD 30477
17-03-17 22:03:05.598 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.598 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.598 -07 000000429 INF: FPGA: Recv ZSGSRD 30479
17-03-17 22:03:05.608 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.608 -07 000000429 INF: FPGA: Recv ZSGSRD 30470
17-03-17 22:03:05.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.618 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.618 -07 000000458 INF: FPGA: Recv ZSGSRD 30478
17-03-17 22:03:05.628 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.628 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.628 -07 000000429 INF: FPGA: Recv ZSGSRD 30467
17-03-17 22:03:05.638 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.638 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.638 -07 000000429 INF: FPGA: Recv ZSGSRD 30462
17-03-17 22:03:05.648 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.648 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:05.648 -07 000000429 INF: FPGA: Recv ZSGSRD 30466
17-03-17 22:03:05.658 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.658 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:05.658 -07 000000429 INF: FPGA: Recv ZPIEZORD 26544
17-03-17 22:03:05.668 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:05.668 -07 000000569 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.536 V. Piezo Error = -8.7 V.
17-03-17 22:03:05.668 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.1 um, Read 10 ADC samples: Avg = 30472 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30470 (-135.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30462 (-135.2 uncal um), Max = 30481 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:03:05.668 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30472, posNoise = 9, negNoise = 10
17-03-17 22:03:05.668 -07 000000569 INF: Z Motor: After move to -0.136091, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:05.668 -07 000000569 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:03:05.668 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:03:05.718 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:03:05.718 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:03:05.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:05.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:05.718 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:05.718 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:05.718 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:03:05.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:05.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:05.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:03:05.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:05.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:03:05.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:03:05.728 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:03:05.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:03:05.778 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:03:05.978 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:03:05.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:03:05.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:03:05.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) start.
17-03-17 22:03:06.018 -07 000000569 INF: FPGA: Recv @CAMSNAP 281
17-03-17 22:03:06.018 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 22:03:06.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:03:06.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1442799048, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:03:06.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:06.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:03:06.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:03:06.118 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:06.118 -07 000000429 INF: Autofocus start
17-03-17 22:03:06.118 -07 000000429 INF: MeasureProfile start
17-03-17 22:03:06.118 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:06.128 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:03:06.128 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:03:06.128 -07 000000429 INF: MeasureProfile done
17-03-17 22:03:06.128 -07 000000429 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:03:06.128 -07 000000429 INF: Autofocus finished
17-03-17 22:03:06.328 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:03:06.328 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:03:06.328 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136081944394875. ----------
17-03-17 22:03:06.328 -07 000000610 INF: Cycle	58	Tile	15	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:03:06.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28270, sync = True, waitForSettling = True)
17-03-17 22:03:06.338 -07 000000610 INF: Z Motor: Moving to -0.129412 mm, started at -0.136082 mm, distance = 6.67 um
17-03-17 22:03:06.338 -07 000000610 INF: FPGA: Xmit ZDACW 28270\n [Z Motor]
17-03-17 22:03:06.338 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:03:06.348 -07 000000610 INF: FPGA: 'ZDACW 28270' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:06.348 -07 000000569 INF: FPGA: Recv ZDACR 28270
17-03-17 22:03:06.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:03:06.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.508 -07 000000569 INF: FPGA: Recv ZSGSRD 29436
17-03-17 22:03:06.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:06.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29435
17-03-17 22:03:06.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.528 -07 000000569 INF: FPGA: Recv ZSGSRD 29427
17-03-17 22:03:06.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.538 -07 000000458 INF: FPGA: Recv ZSGSRD 29435
17-03-17 22:03:06.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.548 -07 000000478 INF: FPGA: Recv ZSGSRD 29439
17-03-17 22:03:06.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.558 -07 000000478 INF: FPGA: Recv ZSGSRD 29436
17-03-17 22:03:06.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.568 -07 000000478 INF: FPGA: Recv ZSGSRD 29439
17-03-17 22:03:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.578 -07 000000478 INF: FPGA: Recv ZSGSRD 29436
17-03-17 22:03:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.588 -07 000000478 INF: FPGA: Recv ZSGSRD 29440
17-03-17 22:03:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:06.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29438
17-03-17 22:03:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:06.608 -07 000000458 INF: FPGA: Recv ZPIEZORD 25147
17-03-17 22:03:06.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:06.618 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.4 V.
17-03-17 22:03:06.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29436 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29436 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29427 (-128.6 uncal um), Max = 29440 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:03:06.618 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29436, posNoise = 4, negNoise = 9
17-03-17 22:03:06.618 -07 000000610 INF: Z Motor: After move to -0.129412, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:06.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 22:03:06.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:06.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:06.618 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:06.618 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:06.628 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:03:06.628 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:03:06.628 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:03:06.628 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:03:06.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:03:06.628 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:06.628 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:03:06.628 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:03:06.628 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:03:06.628 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:03:06.628 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:06.628 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:03:06.638 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:03:06.638 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:03:06.648 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:03:06.648 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:03:06.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28447 150\n [Camera]
17-03-17 22:03:06.848 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:03:06.938 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:07.288 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:03:07.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:03:07.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:07.298 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:07.298 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:03:07.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:03:07.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:03:07.298 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:07.298 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:07.298 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:03:07.488 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28447 828
17-03-17 22:03:07.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:03:07.698 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:03:07.698 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:03:07.698 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:07.698 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:03:07.698 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:03:07.698 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:07.698 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:07.698 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:03:07.698 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:07.708 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:03:07.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:03:07.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:03:07.848 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:07.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:03:07.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:03:07.968 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:07.968 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:07.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:03:07.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:07.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:03:08.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:03:08.038 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:08.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28447 150' command took 2 ms to send, 1387 ms to get response, and 1391 ms overall
17-03-17 22:03:08.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:03:08.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129426460616011. ------
17-03-17 22:03:08.048 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:08.048 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13569 mm
17-03-17 22:03:08.048 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:03:08.048 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:08.048 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:03:08.048 -07 000000429 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:03:08.048 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29641, sync = True, waitForSettling = False)
17-03-17 22:03:08.048 -07 000000478 INF: Z Motor: Moving to -0.135688 mm, started at -0.129426 mm, distance = -6.26 um
17-03-17 22:03:08.058 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:03:08.058 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:08.058 -07 000000475 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:03:08.068 -07 000000478 INF: FPGA: Xmit ZDACW 29641\n [Z Motor]
17-03-17 22:03:08.068 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:03:08.068 -07 000000429 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:08.068 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:03:08.068 -07 000000429 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:03:08.068 -07 000000429 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:03:08.078 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:03:08.078 -07 000000478 INF: FPGA: 'ZDACW 29641' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:03:08.088 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:03:08.098 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:08.098 -07 000000458 INF: FPGA: Recv ZDACR 29641
17-03-17 22:03:08.108 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:03:08.108 -07 000000478 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:03:08.278 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:03:08.278 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:03:08.358 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:03:08.358 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:03:08.358 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:08.368 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:08.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:03:08.368 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:03:08.368 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:08.368 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:08.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 22:03:08.368 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:03:08.458 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:03:08.458 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 22:03:08.498 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:08.508 -07 000000569 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:03:08.508 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:03:08.508 -07 000000429 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:08.508 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:03:08.508 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 22:03:09.458 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:09.458 -07 000000547 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:03:09.468 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:09.468 -07 000000429 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:09.488 -07 000000429 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:09.488 -07 000000429 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:03:09.488 -07 000000429 INF: Y Motor: Moved to 72.3501 after 1437 ms (table move)
17-03-17 22:03:09.488 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135688 mm (DAC = 29641)
17-03-17 22:03:09.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.498 -07 000000459 INF: FPGA: Recv ZSGSRD 30426
17-03-17 22:03:09.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:03:09.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.498 -07 000000459 INF: FPGA: Recv ZSGSRD 30418
17-03-17 22:03:09.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.508 -07 000000459 INF: FPGA: Recv ZSGSRD 30407
17-03-17 22:03:09.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.518 -07 000000459 INF: FPGA: Recv ZSGSRD 30419
17-03-17 22:03:09.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30412
17-03-17 22:03:09.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.538 -07 000000459 INF: FPGA: Recv ZSGSRD 30416
17-03-17 22:03:09.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:09.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.548 -07 000000459 INF: FPGA: Recv ZSGSRD 30416
17-03-17 22:03:09.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.558 -07 000000459 INF: FPGA: Recv ZSGSRD 30404
17-03-17 22:03:09.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.568 -07 000000459 INF: FPGA: Recv ZSGSRD 30407
17-03-17 22:03:09.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:09.578 -07 000000459 INF: FPGA: Recv ZSGSRD 30410
17-03-17 22:03:09.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.588 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:09.588 -07 000000459 INF: FPGA: Recv ZPIEZORD 26411
17-03-17 22:03:09.598 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:09.598 -07 000000415 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.523 V. Piezo Error = -8.8 V.
17-03-17 22:03:09.598 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30414 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30414 (-134.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30404 (-134.9 uncal um), Max = 30426 (-135.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:03:09.598 -07 000000415 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30414, posNoise = 12, negNoise = 10
17-03-17 22:03:09.598 -07 000000415 INF: Z Motor: After move to -0.135688, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:09.598 -07 000000415 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:03:09.598 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:03:09.648 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:03:09.648 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:03:09.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:09.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:09.648 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:09.648 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:09.648 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:03:09.648 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:09.658 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:09.658 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:03:09.658 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:09.658 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:03:09.668 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:03:09.668 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:03:09.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:03:09.708 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:03:09.908 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:03:09.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:03:09.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:03:09.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:03:09.948 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:03:09.948 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 22:03:09.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:03:10.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:03:10.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:10.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:03:10.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 22:03:10.048 -07 000000459 INF: Autofocus start
17-03-17 22:03:10.048 -07 000000459 INF: MeasureProfile start
17-03-17 22:03:10.048 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:10.058 -07 000000459 INF: MeasureProfile done
17-03-17 22:03:10.058 -07 000000459 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:03:10.058 -07 000000459 INF: Autofocus finished
17-03-17 22:03:10.068 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:10.068 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-17 22:03:10.068 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:03:10.118 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.997626,
17-03-17 22:03:10.268 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:03:10.268 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:03:10.268 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135709340090653. ----------
17-03-17 22:03:10.268 -07 000000610 INF: Cycle	58	Tile	16	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:03:10.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28181, sync = True, waitForSettling = True)
17-03-17 22:03:10.278 -07 000000610 INF: Z Motor: Moving to -0.129004 mm, started at -0.135709 mm, distance = 6.70 um
17-03-17 22:03:10.278 -07 000000610 INF: FPGA: Xmit ZDACW 28181\n [Z Motor]
17-03-17 22:03:10.278 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:03:10.288 -07 000000610 INF: FPGA: 'ZDACW 28181' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:10.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:10.288 -07 000000415 INF: FPGA: Recv ZDACR 28181
17-03-17 22:03:10.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:03:10.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.448 -07 000000012 INF: FPGA: Recv ZSGSRD 29372
17-03-17 22:03:10.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:10.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.458 -07 000000482 INF: FPGA: Recv ZSGSRD 29377
17-03-17 22:03:10.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29370
17-03-17 22:03:10.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.478 -07 000000486 INF: FPGA: Recv ZSGSRD 29365
17-03-17 22:03:10.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29368
17-03-17 22:03:10.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29375
17-03-17 22:03:10.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:03:10.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:03:10.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.528 -07 000000012 INF: FPGA: Recv ZSGSRD 29371
17-03-17 22:03:10.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:10.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29370
17-03-17 22:03:10.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:10.548 -07 000000415 INF: FPGA: Recv ZPIEZORD 25121
17-03-17 22:03:10.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:10.558 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.300 V. Piezo Error = -9.3 V.
17-03-17 22:03:10.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29371 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29371 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29365 (-128.2 uncal um), Max = 29377 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:03:10.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29371, posNoise = 6, negNoise = 6
17-03-17 22:03:10.558 -07 000000610 INF: Z Motor: After move to -0.129004, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:10.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:03:10.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:10.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:10.558 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:10.558 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:10.558 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:03:10.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:10.558 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:03:10.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:03:10.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:03:10.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:03:10.558 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:03:10.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:03:10.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:03:10.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:03:10.568 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:10.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:03:10.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:03:10.568 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:03:10.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:03:10.568 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:03:10.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28358 150\n [Camera]
17-03-17 22:03:10.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:03:11.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:03:11.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:03:11.218 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:11.218 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:11.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:03:11.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:03:11.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:03:11.218 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:11.338 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:11.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 22:03:11.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28358 831
17-03-17 22:03:11.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:03:11.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:03:11.598 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:03:11.598 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:11.608 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:11.608 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:03:11.718 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:03:11.718 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:03:11.718 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:11.728 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:03:11.728 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 22:03:11.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:03:11.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:03:11.778 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:11.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:03:11.778 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:11.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:03:11.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:03:11.778 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:11.778 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:11.778 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:03:12.188 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 408 ms.
17-03-17 22:03:12.188 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:03:12.188 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:12.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 22:03:12.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 22:03:12.188 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:12.188 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:03:12.188 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:03:12.188 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:03:12.198 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 22:03:12.198 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:12.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:03:12.198 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:12.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28358 150' command took 2 ms to send, 1616 ms to get response, and 1625 ms overall
17-03-17 22:03:12.198 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:12.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:03:12.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.129008886826796. ------
17-03-17 22:03:12.208 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13559 mm
17-03-17 22:03:12.208 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:03:12.208 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:12.728 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:03:12.728 -07 000000458 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 22:03:12.728 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:13.728 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:13.728 -07 000000502 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:03:13.728 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 22:03:13.728 -07 000000458 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:13.728 -07 000000458 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:03:13.728 -07 000000458 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:03:13.728 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:03:13.728 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1510 ms to get response, and 1513 ms overall
17-03-17 22:03:13.728 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29620, sync = True, waitForSettling = False)
17-03-17 22:03:13.728 -07 000000502 INF: Z Motor: Moving to -0.135592 mm, started at -0.129009 mm, distance = -6.58 um
17-03-17 22:03:13.738 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:03:13.748 -07 000000502 INF: FPGA: Xmit ZDACW 29620\n [Z Motor]
17-03-17 22:03:14.728 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 22:03:14.728 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:03:14.728 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 22:03:14.728 -07 000000502 INF: FPGA: 'ZDACW 29620' command took 0 ms to send, 970 ms to get response, and 997 ms overall
17-03-17 22:03:14.728 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:14.728 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 980 ms to get response, and 998 ms overall
17-03-17 22:03:14.728 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 990 ms to get response, and 998 ms overall
17-03-17 22:03:14.728 -07 000000626 INF: FPGA: Recv ZDACR 29620
17-03-17 22:03:14.738 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:14.738 -07 000000502 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-17 22:03:14.768 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:14.768 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:03:14.778 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:03:14.778 -07 000000458 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:14.778 -07 000000458 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:03:14.778 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1000 ms, distance = 0.843 mm, average velocity = 0.843 mm/sec
17-03-17 22:03:15.478 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.988112,
17-03-17 22:03:15.728 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:15.728 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:03:15.738 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:15.738 -07 000000458 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:15.758 -07 000000458 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:15.758 -07 000000458 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:03:15.758 -07 000000458 INF: Y Motor: Moved to 73.1763 after 3035 ms (table move)
17-03-17 22:03:15.768 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135592 mm (DAC = 29620)
17-03-17 22:03:15.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.768 -07 000000502 INF: FPGA: Recv ZSGSRD 30402
17-03-17 22:03:15.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.778 -07 000000429 INF: FPGA: Recv ZSGSRD 30396
17-03-17 22:03:15.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.788 -07 000000475 INF: FPGA: Recv ZSGSRD 30398
17-03-17 22:03:15.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.798 -07 000000429 INF: FPGA: Recv ZSGSRD 30396
17-03-17 22:03:15.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.808 -07 000000569 INF: FPGA: Recv ZSGSRD 30393
17-03-17 22:03:15.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.818 -07 000000478 INF: FPGA: Recv ZSGSRD 30395
17-03-17 22:03:15.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.828 -07 000000569 INF: FPGA: Recv ZSGSRD 30395
17-03-17 22:03:15.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.838 -07 000000458 INF: FPGA: Recv ZSGSRD 30402
17-03-17 22:03:15.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.848 -07 000000626 INF: FPGA: Recv ZSGSRD 30400
17-03-17 22:03:15.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:15.858 -07 000000569 INF: FPGA: Recv ZSGSRD 30394
17-03-17 22:03:15.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.868 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:15.868 -07 000000626 INF: FPGA: Recv ZPIEZORD 26470
17-03-17 22:03:15.878 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:15.878 -07 000000459 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.520 V. Piezo Error = -8.7 V.
17-03-17 22:03:15.878 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30397 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30396 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30393 (-134.8 uncal um), Max = 30402 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:03:15.878 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30397, posNoise = 5, negNoise = 4
17-03-17 22:03:15.878 -07 000000459 INF: Z Motor: After move to -0.135592, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:15.878 -07 000000459 INF: Z Motor: Settle wait time = 2038 ms, measure time = 110 ms (allowed 150 ms), total time = 2148 ms
17-03-17 22:03:15.878 -07 000000459 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:03:15.918 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3702 ms
17-03-17 22:03:15.918 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:03:15.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:15.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:15.918 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:15.918 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:15.918 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:03:15.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:15.918 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:03:15.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:03:15.928 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:15.928 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:03:15.928 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:03:15.928 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:03:15.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:03:15.978 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:03:16.178 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:03:16.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:03:16.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:03:16.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 22:03:16.218 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:03:16.218 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 22:03:16.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:03:16.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:03:16.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:16.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:03:16.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 22:03:16.318 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:16.318 -07 000000569 INF: Autofocus start
17-03-17 22:03:16.318 -07 000000569 INF: MeasureProfile start
17-03-17 22:03:16.328 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:16.328 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:03:16.328 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:03:16.328 -07 000000569 INF: MeasureProfile done
17-03-17 22:03:16.328 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:03:16.328 -07 000000569 INF: Autofocus finished
17-03-17 22:03:16.528 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:03:16.528 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:03:16.528 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135600128484243. ----------
17-03-17 22:03:16.538 -07 000000610 INF: Cycle	58	Tile	17	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:03:16.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28114, sync = True, waitForSettling = True)
17-03-17 22:03:16.538 -07 000000610 INF: Z Motor: Moving to -0.128698 mm, started at -0.135600 mm, distance = 6.90 um
17-03-17 22:03:16.538 -07 000000610 INF: FPGA: Xmit ZDACW 28114\n [Z Motor]
17-03-17 22:03:16.538 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 22:03:16.548 -07 000000610 INF: FPGA: 'ZDACW 28114' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:16.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:16.548 -07 000000459 INF: FPGA: Recv ZDACR 28114
17-03-17 22:03:16.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:03:16.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.708 -07 000000458 INF: FPGA: Recv ZSGSRD 29327
17-03-17 22:03:16.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.718 -07 000000429 INF: FPGA: Recv ZSGSRD 29323
17-03-17 22:03:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.728 -07 000000478 INF: FPGA: Recv ZSGSRD 29324
17-03-17 22:03:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.738 -07 000000626 INF: FPGA: Recv ZSGSRD 29327
17-03-17 22:03:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29320
17-03-17 22:03:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29329
17-03-17 22:03:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.768 -07 000000626 INF: FPGA: Recv ZSGSRD 29324
17-03-17 22:03:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.778 -07 000000569 INF: FPGA: Recv ZSGSRD 29326
17-03-17 22:03:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.808 -07 000000429 INF: FPGA: Recv ZSGSRD 29323
17-03-17 22:03:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:03:16.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:16.818 -07 000000626 INF: FPGA: Recv ZSGSRD 29324
17-03-17 22:03:16.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:16.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:16.838 -07 000000429 INF: FPGA: Recv ZPIEZORD 25031
17-03-17 22:03:16.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:03:16.848 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.4 V.
17-03-17 22:03:16.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29325 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29324 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29320 (-127.9 uncal um), Max = 29329 (-128.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:03:16.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29325, posNoise = 4, negNoise = 5
17-03-17 22:03:16.848 -07 000000610 INF: Z Motor: After move to -0.128698, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:16.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 22:03:16.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:16.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:16.848 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:16.848 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:16.848 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:03:16.848 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:03:16.848 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:03:16.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:16.848 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:03:16.848 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:03:16.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:16.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:03:16.858 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:03:16.858 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:03:16.858 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:03:16.858 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:03:16.878 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 22:03:16.878 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 22:03:16.878 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 22:03:16.878 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 22:03:16.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28291 150\n [Camera]
17-03-17 22:03:16.938 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:16.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:17.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:03:17.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:03:17.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:03:17.518 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:17.518 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:17.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:03:17.528 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:03:17.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:03:17.528 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:17.528 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:17.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:03:17.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28291 831
17-03-17 22:03:17.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:03:17.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:03:17.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:03:17.908 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:17.918 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:17.918 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:03:17.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 22:03:17.918 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:03:17.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:17.918 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:17.928 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:03:18.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:03:18.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:03:18.078 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:18.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:03:18.078 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:18.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:03:18.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:03:18.078 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:18.078 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:18.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:03:18.268 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1384
17-03-17 22:03:18.268 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:18.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28291 150' command took 2 ms to send, 1384 ms to get response, and 1390 ms overall
17-03-17 22:03:18.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:03:18.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128713373068275. ------
17-03-17 22:03:18.278 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:18.278 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13505 mm
17-03-17 22:03:18.278 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:03:18.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:03:18.458 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:03:18.458 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:18.458 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:18.458 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:03:18.458 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:03:18.458 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:18.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:03:18.468 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:03:18.468 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:03:18.478 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:18.478 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 22:03:18.478 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:03:18.478 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:03:18.478 -07 000000541 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:03:18.478 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29501, sync = True, waitForSettling = False)
17-03-17 22:03:18.478 -07 000000475 INF: Z Motor: Moving to -0.135047 mm, started at -0.128713 mm, distance = -6.33 um
17-03-17 22:03:18.488 -07 000000475 INF: FPGA: Xmit ZDACW 29501\n [Z Motor]
17-03-17 22:03:18.498 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:19.228 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:03:19.228 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:03:19.228 -07 000000475 INF: FPGA: 'ZDACW 29501' command took 0 ms to send, 730 ms to get response, and 741 ms overall
17-03-17 22:03:19.228 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:03:19.228 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 741 ms to get response, and 743 ms overall
17-03-17 22:03:19.228 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:19.228 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 720 ms to get response, and 742 ms overall
17-03-17 22:03:19.228 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:19.228 -07 000000541 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:03:19.228 -07 000000541 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:03:19.228 -07 000000512 INF: FPGA: Recv ZDACR 29501
17-03-17 22:03:19.238 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:03:19.238 -07 000000475 INF: Z Motor: MoveAbsStepped took 751 ms (did NOT wait for settling yet))
17-03-17 22:03:19.238 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:03:19.618 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:03:19.618 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-17 22:03:19.648 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:19.648 -07 000000475 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:03:19.658 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:19.658 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:19.658 -07 000000541 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:03:19.658 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-17 22:03:20.608 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:20.608 -07 000000475 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:03:20.618 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:20.618 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:20.628 -07 000000541 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:20.628 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:03:20.628 -07 000000541 INF: Y Motor: Moved to 74.0083 after 2150 ms (table move)
17-03-17 22:03:20.638 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135047 mm (DAC = 29501)
17-03-17 22:03:20.638 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.638 -07 000000475 INF: FPGA: Recv ZSGSRD 30321
17-03-17 22:03:20.648 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:03:20.648 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.648 -07 000000541 INF: FPGA: Recv ZSGSRD 30311
17-03-17 22:03:20.658 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.658 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.658 -07 000000512 INF: FPGA: Recv ZSGSRD 30310
17-03-17 22:03:20.668 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.668 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.668 -07 000000512 INF: FPGA: Recv ZSGSRD 30310
17-03-17 22:03:20.678 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.678 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.678 -07 000000512 INF: FPGA: Recv ZSGSRD 30317
17-03-17 22:03:20.688 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.688 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.688 -07 000000512 INF: FPGA: Recv ZSGSRD 30314
17-03-17 22:03:20.698 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.698 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30308
17-03-17 22:03:20.708 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.708 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.708 -07 000000475 INF: FPGA: Recv ZSGSRD 30312
17-03-17 22:03:20.718 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.718 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.718 -07 000000512 INF: FPGA: Recv ZSGSRD 30308
17-03-17 22:03:20.728 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.728 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:20.728 -07 000000475 INF: FPGA: Recv ZSGSRD 30315
17-03-17 22:03:20.738 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.738 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:20.738 -07 000000475 INF: FPGA: Recv ZPIEZORD 26356
17-03-17 22:03:20.748 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:20.748 -07 000000458 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.502 V. Piezo Error = -8.7 V.
17-03-17 22:03:20.748 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30313 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30312 (-134.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30308 (-134.2 uncal um), Max = 30321 (-134.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:03:20.748 -07 000000458 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30313, posNoise = 8, negNoise = 5
17-03-17 22:03:20.748 -07 000000458 INF: Z Motor: After move to -0.135047, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:20.748 -07 000000458 INF: Z Motor: Settle wait time = 2154 ms, measure time = 108 ms (allowed 150 ms), total time = 2262 ms
17-03-17 22:03:20.748 -07 000000458 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 22:03:20.798 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2517 ms
17-03-17 22:03:20.798 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:03:20.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:20.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:20.798 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:20.798 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:20.798 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:03:20.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:20.808 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:20.808 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:03:20.808 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:20.808 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:03:20.818 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:03:20.818 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:03:20.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:03:20.838 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 3.983999,
17-03-17 22:03:20.868 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:03:21.068 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:03:21.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:03:21.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:03:21.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1447204352, 0x0, 559484976) start.
17-03-17 22:03:21.108 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:03:21.108 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:03:21.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 22:03:21.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1447204352, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:03:21.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:21.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:03:21.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:03:21.208 -07 000000475 INF: Autofocus start
17-03-17 22:03:21.208 -07 000000475 INF: MeasureProfile start
17-03-17 22:03:21.208 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:21.218 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:21.218 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:21.218 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:03:21.218 -07 000000475 INF: MeasureProfile done
17-03-17 22:03:21.218 -07 000000475 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 22:03:21.218 -07 000000475 INF: Autofocus finished
17-03-17 22:03:21.418 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:03:21.418 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:03:21.418 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.135060494664335. ----------
17-03-17 22:03:21.428 -07 000000610 INF: Cycle	58	Tile	18	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:03:21.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28006, sync = True, waitForSettling = True)
17-03-17 22:03:21.428 -07 000000610 INF: Z Motor: Moving to -0.128203 mm, started at -0.135060 mm, distance = 6.86 um
17-03-17 22:03:21.428 -07 000000610 INF: FPGA: Xmit ZDACW 28006\n [Z Motor]
17-03-17 22:03:21.428 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 22:03:21.438 -07 000000610 INF: FPGA: 'ZDACW 28006' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:21.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:21.438 -07 000000424 INF: FPGA: Recv ZDACR 28006
17-03-17 22:03:21.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:03:21.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29242
17-03-17 22:03:21.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.608 -07 000000012 INF: FPGA: Recv ZSGSRD 29249
17-03-17 22:03:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.618 -07 000000486 INF: FPGA: Recv ZSGSRD 29246
17-03-17 22:03:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29249
17-03-17 22:03:21.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.638 -07 000000512 INF: FPGA: Recv ZSGSRD 29243
17-03-17 22:03:21.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.648 -07 000000012 INF: FPGA: Recv ZSGSRD 29246
17-03-17 22:03:21.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.658 -07 000000541 INF: FPGA: Recv ZSGSRD 29250
17-03-17 22:03:21.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.668 -07 000000012 INF: FPGA: Recv ZSGSRD 29241
17-03-17 22:03:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.678 -07 000000475 INF: FPGA: Recv ZSGSRD 29244
17-03-17 22:03:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:21.688 -07 000000512 INF: FPGA: Recv ZSGSRD 29248
17-03-17 22:03:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:21.698 -07 000000547 INF: FPGA: Recv ZPIEZORD 24943
17-03-17 22:03:21.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:21.708 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.4 V.
17-03-17 22:03:21.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29246 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29246 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29241 (-127.4 uncal um), Max = 29250 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:03:21.708 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29246, posNoise = 4, negNoise = 5
17-03-17 22:03:21.708 -07 000000610 INF: Z Motor: After move to -0.128203, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:21.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:03:21.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:21.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:21.708 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:21.708 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:21.708 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:03:21.708 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:03:21.708 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:03:21.708 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:21.708 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:03:21.708 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:03:21.708 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:21.708 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:03:21.718 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:03:21.718 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:03:21.718 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:03:21.718 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:03:21.728 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:03:21.728 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:03:21.728 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:03:21.728 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:03:21.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28183 150\n [Camera]
17-03-17 22:03:21.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:03:21.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:21.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:22.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:03:22.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:03:22.378 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:22.378 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:22.378 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:03:22.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:03:22.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:03:22.378 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:22.378 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:22.378 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:03:22.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28183 828
17-03-17 22:03:22.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:03:22.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:03:22.778 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:03:22.778 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:22.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:03:22.778 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:03:22.778 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:22.788 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:22.788 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:03:22.788 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:22.788 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:03:22.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:03:22.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:03:22.938 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:22.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:22.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 22:03:22.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:03:22.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:03:22.938 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:22.938 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:22.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 22:03:23.128 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:03:23.128 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:23.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28183 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-17 22:03:23.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:03:23.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128205860309076. ------
17-03-17 22:03:23.258 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:23.258 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13461 mm
17-03-17 22:03:23.258 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:03:23.258 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:03:23.258 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:03:23.268 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:23.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:03:23.338 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:03:23.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:23.338 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 22:03:23.338 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:03:23.338 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:23.348 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:23.348 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:03:23.348 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 22:03:23.348 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 22:03:23.358 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29406, sync = True, waitForSettling = False)
17-03-17 22:03:23.358 -07 000000475 INF: Z Motor: Moving to -0.134612 mm, started at -0.128206 mm, distance = -6.41 um
17-03-17 22:03:23.358 -07 000000475 INF: FPGA: Xmit ZDACW 29406\n [Z Motor]
17-03-17 22:03:23.368 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:23.368 -07 000000424 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:03:23.368 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 100 ms to get response, and 109 ms overall
17-03-17 22:03:23.368 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:03:23.368 -07 000000475 INF: FPGA: 'ZDACW 29406' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:03:23.368 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:23.368 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 90 ms to get response, and 106 ms overall
17-03-17 22:03:23.368 -07 000000512 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:23.368 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:03:23.368 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-17 22:03:23.368 -07 000000424 INF: FPGA: Recv ZDACR 29406
17-03-17 22:03:23.378 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:03:23.378 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:03:23.378 -07 000000475 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 22:03:23.388 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:03:23.578 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:03:23.578 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 22:03:23.758 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:03:23.758 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 22:03:23.788 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:23.788 -07 000000475 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:03:23.798 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:03:23.798 -07 000000512 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:23.798 -07 000000512 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:03:23.798 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.132 mm/sec
17-03-17 22:03:24.748 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:24.748 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:03:24.758 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:24.758 -07 000000512 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:24.778 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:24.778 -07 000000512 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:03:24.778 -07 000000512 INF: Y Motor: Moved to 74.8325 after 1518 ms (table move)
17-03-17 22:03:24.778 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134612 mm (DAC = 29406)
17-03-17 22:03:24.778 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.778 -07 000000475 INF: FPGA: Recv ZSGSRD 30252
17-03-17 22:03:24.788 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:03:24.788 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.788 -07 000000424 INF: FPGA: Recv ZSGSRD 30237
17-03-17 22:03:24.798 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.798 -07 000000475 INF: FPGA: Recv ZSGSRD 30241
17-03-17 22:03:24.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.808 -07 000000512 INF: FPGA: Recv ZSGSRD 30237
17-03-17 22:03:24.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.818 -07 000000424 INF: FPGA: Recv ZSGSRD 30245
17-03-17 22:03:24.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.828 -07 000000424 INF: FPGA: Recv ZSGSRD 30247
17-03-17 22:03:24.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.838 -07 000000512 INF: FPGA: Recv ZSGSRD 30250
17-03-17 22:03:24.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.848 -07 000000424 INF: FPGA: Recv ZSGSRD 30254
17-03-17 22:03:24.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.858 -07 000000475 INF: FPGA: Recv ZSGSRD 30249
17-03-17 22:03:24.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:24.868 -07 000000475 INF: FPGA: Recv ZSGSRD 30241
17-03-17 22:03:24.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.878 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:24.878 -07 000000482 INF: FPGA: Recv ZPIEZORD 26319
17-03-17 22:03:24.888 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:24.888 -07 000000627 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -8.6 V.
17-03-17 22:03:24.888 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30245 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30246 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30237 (-133.8 uncal um), Max = 30254 (-133.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:03:24.888 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30245, posNoise = 9, negNoise = 8
17-03-17 22:03:24.888 -07 000000627 INF: Z Motor: After move to -0.134612, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:24.888 -07 000000627 INF: Z Motor: Settle wait time = 1418 ms, measure time = 105 ms (allowed 150 ms), total time = 1523 ms
17-03-17 22:03:24.888 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:03:24.938 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1678 ms
17-03-17 22:03:24.938 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:03:24.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:24.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:24.938 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:24.938 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:24.938 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:03:24.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:24.938 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:03:24.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:03:24.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:03:24.948 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:03:24.948 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:03:24.948 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:03:24.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:03:24.998 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:03:25.198 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:03:25.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:03:25.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:03:25.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:03:25.238 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:03:25.238 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:03:25.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:03:25.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:03:25.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:25.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:03:25.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:03:25.338 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:03:25.338 -07 000000476 INF: Autofocus start
17-03-17 22:03:25.338 -07 000000476 INF: MeasureProfile start
17-03-17 22:03:25.338 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:03:25.348 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:03:25.348 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:03:25.348 -07 000000476 INF: MeasureProfile done
17-03-17 22:03:25.348 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:03:25.348 -07 000000476 INF: Autofocus finished
17-03-17 22:03:25.548 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:03:25.548 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:03:25.548 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134623648238695. ----------
17-03-17 22:03:25.548 -07 000000610 INF: Cycle	58	Tile	19	Exposure Settings		A	443	G	213	T	213	C	443
17-03-17 22:03:25.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27930, sync = True, waitForSettling = True)
17-03-17 22:03:25.558 -07 000000610 INF: Z Motor: Moving to -0.127855 mm, started at -0.134624 mm, distance = 6.77 um
17-03-17 22:03:25.558 -07 000000610 INF: FPGA: Xmit ZDACW 27930\n [Z Motor]
17-03-17 22:03:25.558 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 22:03:25.568 -07 000000610 INF: FPGA: 'ZDACW 27930' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:03:25.568 -07 000000424 INF: FPGA: Recv ZDACR 27930
17-03-17 22:03:25.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:03:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.728 -07 000000476 INF: FPGA: Recv ZSGSRD 29193
17-03-17 22:03:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:25.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.738 -07 000000433 INF: FPGA: Recv ZSGSRD 29192
17-03-17 22:03:25.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.748 -07 000000424 INF: FPGA: Recv ZSGSRD 29197
17-03-17 22:03:25.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.758 -07 000000415 INF: FPGA: Recv ZSGSRD 29196
17-03-17 22:03:25.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.768 -07 000000512 INF: FPGA: Recv ZSGSRD 29193
17-03-17 22:03:25.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.778 -07 000000475 INF: FPGA: Recv ZSGSRD 29197
17-03-17 22:03:25.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.788 -07 000000424 INF: FPGA: Recv ZSGSRD 29192
17-03-17 22:03:25.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29192
17-03-17 22:03:25.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29188
17-03-17 22:03:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:03:25.818 -07 000000512 INF: FPGA: Recv ZSGSRD 29194
17-03-17 22:03:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:03:25.828 -07 000000415 INF: FPGA: Recv ZPIEZORD 24877
17-03-17 22:03:25.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:25.838 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.5 V.
17-03-17 22:03:25.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29193 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29193 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29188 (-127.1 uncal um), Max = 29197 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:03:25.838 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29193, posNoise = 4, negNoise = 5
17-03-17 22:03:25.838 -07 000000610 INF: Z Motor: After move to -0.127855, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:03:25.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:03:25.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:03:25.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:03:25.838 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:03:25.838 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:03:25.838 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:03:25.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:03:25.838 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:03:25.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:03:25.838 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:03:25.838 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:03:25.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:03:25.838 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:03:25.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:03:25.848 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:03:25.848 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:03:25.848 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:03:25.858 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:03:25.858 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:03:25.858 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:03:25.858 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:03:25.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 443 443 213 213 28107 150\n [Camera]
17-03-17 22:03:26.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:03:26.198 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.003063,
17-03-17 22:03:26.508 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 635
17-03-17 22:03:26.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 635
17-03-17 22:03:26.508 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:26.508 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 635
17-03-17 22:03:26.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 635
17-03-17 22:03:26.508 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:26.508 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:26.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 22:03:26.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:26.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) start.
17-03-17 22:03:26.698 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28107 828
17-03-17 22:03:26.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 978
17-03-17 22:03:26.908 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:03:26.908 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:03:26.908 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:26.908 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:26.908 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:03:26.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1459157304, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:03:26.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:03:26.918 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:26.918 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:26.928 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:03:26.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 57. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:27.058 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1191
17-03-17 22:03:27.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1191
17-03-17 22:03:27.058 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:03:27.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1191
17-03-17 22:03:27.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1191
17-03-17 22:03:27.068 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:03:27.068 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:03:27.068 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:03:27.188 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:03:27.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:03:27.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1383
17-03-17 22:03:27.258 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:03:27.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 443 443 213 213 28107 150' command took 2 ms to send, 1380 ms to get response, and 1390 ms overall
17-03-17 22:03:27.458 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:03:27.458 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:03:27.458 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:27.468 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:03:27.468 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:03:27.588 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:03:27.588 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:03:27.588 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:03:27.588 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:03:27.588 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 22:03:27.588 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:03:27.628 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 22:03:27.628 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:03:27.678 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:03:27.688 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 22:03:27.688 -07 000000610 INF: Imaging Cycle 58: ScanTilesCommand Cycle 58 time end. Duration was 165664 ms.
17-03-17 22:03:27.688 -07 000000610 INF: =================== Cycle #58 ===================
17-03-17 22:03:27.688 -07 000000610 INF: ===================  ===================
17-03-17 22:03:27.688 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:03:27.688 -07 000000415 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 22:03:27.698 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:03:27.698 -07 000000433 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 22:03:27.698 -07 000000433 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 58, FrontChillerTemperature: 4.003063, FrontChillerHeatSinkTemperature: 0.436892, AmbientTemperature: 19.00926, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.7136, GreenLEDSensorTemperature: 26.30692, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 22:03:27.738 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.