17-03-17 22:03:27.788 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:03:27.798 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 22:03:27.798 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 22:03:27.798 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:27.798 -07 000000424 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:03:27.808 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:03:27.808 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:27.808 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 22:03:27.808 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 22:03:27.808 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 22:03:27.918 -07 000000415 INF: FPGA: Recv YMVTO 154377 871
17-03-17 22:03:27.918 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 22:03:27.918 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 22:03:27.918 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 22:03:27.918 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 22:03:30.918 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:03:30.918 -07 000000475 INF: FPGA: Recv YRDPOS 154379
17-03-17 22:03:30.928 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:03:30.928 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:03:30.938 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:03:30.938 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 22:03:30.938 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3147 ms
17-03-17 22:03:30.948 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 60° ===================
17-03-17 22:03:30.948 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 22:03:30.948 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 22:03:30.948 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:03:30.958 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:03:30.958 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:03:30.958 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 22:03:30.968 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:03:30.968 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 60° ===================
17-03-17 22:03:30.968 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:03:30.968 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:03:30.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:03:30.988 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:03:30.988 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 22:03:30.988 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:03:31.288 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:03:31.308 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:03:31.308 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:03:31.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:03:31.378 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:03:31.378 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:03:31.478 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:03:31.478 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:03:31.558 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.996267,
17-03-17 22:03:31.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:31.608 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:03:31.608 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:03:31.608 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:03:31.738 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:03:31.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:31.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:03:31.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=906, R2=926, Total=1832. Warn if over 250 bubbles per interval.
17-03-17 22:03:34.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:34.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:35.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:35.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:35.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:35.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:35.838 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:03:35.838 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:03:35.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:35.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:03:35.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:03:36.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:36.158 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:03:36.158 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:03:36.158 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:03:36.288 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:03:36.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:36.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:36.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:36.778 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:03:36.778 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:03:36.918 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.979922,
17-03-17 22:03:36.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 22:03:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=907, R2=928, Total=1835. Warn if over 250 bubbles per interval.
17-03-17 22:03:37.998 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:03:37.998 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 22:03:37.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:03:38.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:03:38.018 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 22:03:38.018 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 22:03:38.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:03:38.168 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 22:03:38.168 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 22:03:38.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:03:38.238 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:03:38.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:03:38.338 -07 000000610 INF: =================== Cycle #59, Pumping Reagent CMS (4) ===================
17-03-17 22:03:38.338 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:03:38.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:38.368 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:03:38.368 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:03:38.368 -07 000000610 INF: =================== Cycle #59, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 22:03:38.498 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:03:38.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:39.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:40.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:40.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:40.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:40.458 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:03:40.458 -07 000000610 INF: =================== Cycle #59, Pumping Reagent CMS (4) ===================
17-03-17 22:03:40.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:40.618 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:03:40.618 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:03:40.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:40.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:03:40.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:03:40.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:03:40.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:03:40.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:41.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:41.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:41.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:03:41.398 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:03:41.938 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-17 22:03:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=910, R2=930, Total=1840. Warn if over 250 bubbles per interval.
17-03-17 22:03:42.278 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.973092,
17-03-17 22:03:42.618 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:03:42.618 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:03:42.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:03:42.638 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 22:03:42.638 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 22:03:42.638 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 22:03:42.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:03:42.808 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 22:03:42.808 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 22:03:42.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:03:42.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:03:42.878 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:03:42.978 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:03:42.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:03:42.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:43.008 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:03:43.008 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:03:43.008 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:03:43.138 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:03:43.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:44.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:44.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:44.078 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:03:44.078 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:03:44.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:44.238 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:03:44.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:03:44.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:44.398 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:03:44.398 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:03:44.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:03:44.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:03:44.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:44.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:45.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:45.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:03:45.018 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:03:45.018 -07 000000627 INF: WaitCommand(10000) start
17-03-17 22:03:45.018 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:03:45.018 -07 000000476 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:03:46.238 -07 000000476 INF: AsyncDelayTimer waited 1214ms
17-03-17 22:03:46.238 -07 000000476 INF: LanePump: Xmit /1?\r
17-03-17 22:03:46.268 -07 000000476 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:03:46.268 -07 000000476 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:03:46.398 -07 000000476 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:03:46.438 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:46.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 6
17-03-17 22:03:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=6, R2=3, Total=9. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=916, R2=933, Total=1849. Warn if over 250 bubbles per interval.
17-03-17 22:03:47.638 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.994908,
17-03-17 22:03:47.968 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:47.998 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:48.418 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 22:03:48.448 -07 000000476 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:03:48.448 -07 000000476 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 22:03:48.448 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:03:48.448 -07 000000476 INF: ===================  ===================
17-03-17 22:03:51.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:03:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=916, R2=934, Total=1850. Warn if over 250 bubbles per interval.
17-03-17 22:03:52.998 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.003063,
17-03-17 22:03:55.028 -07 000000627 INF: WaitCommand(10000) end
17-03-17 22:03:55.028 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:03:55.028 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 22:03:55.028 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:03:55.888 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:03:55.888 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:03:55.888 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:03:56.018 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 22:03:56.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:03:56.938 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 22:03:56.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=916, R2=936, Total=1852. Warn if over 250 bubbles per interval.
17-03-17 22:03:58.358 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.000345,
17-03-17 22:04:01.938 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-17 22:04:01.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=919, R2=937, Total=1856. Warn if over 250 bubbles per interval.
17-03-17 22:04:02.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:02.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:02.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:02.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:03.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:03.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:03.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:03.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:03.718 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.019446,
17-03-17 22:04:03.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:04.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:04.018 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 22:04:04.018 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:04:04.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:04.178 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:04:04.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:04:04.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:04.338 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:04:04.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:04:04.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:04:04.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:04:04.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:04.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:04.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:04.958 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:04:04.958 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:04:06.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:04:06.178 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 22:04:06.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:04:06.198 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:04:06.198 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 22:04:06.198 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 22:04:06.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:04:06.428 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 22:04:06.428 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 22:04:06.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:04:06.498 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:04:06.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:04:06.598 -07 000000610 INF: =================== Cycle #59, Pumping Reagent IMT (1) ===================
17-03-17 22:04:06.598 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:04:06.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:06.628 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 22:04:06.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 22:04:06.628 -07 000000610 INF: =================== Cycle #59, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 22:04:06.758 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:04:06.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:06.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 22:04:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=921, R2=940, Total=1861. Warn if over 250 bubbles per interval.
17-03-17 22:04:08.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:08.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:08.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:08.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:08.718 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:04:08.718 -07 000000610 INF: =================== Cycle #59, Pumping Reagent IMT (1) ===================
17-03-17 22:04:08.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:08.878 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:04:08.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:04:09.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:09.038 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:04:09.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:04:09.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:04:09.078 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.003063,
17-03-17 22:04:09.168 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:04:09.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:09.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:09.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:09.658 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:04:09.658 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:04:10.878 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:04:10.878 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:04:10.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:04:10.898 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 22:04:10.898 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 22:04:10.898 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:04:11.128 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:04:11.148 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 22:04:11.148 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 22:04:11.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:04:11.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:04:11.218 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:04:11.318 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:04:11.318 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:04:11.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:11.348 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 22:04:11.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 22:04:11.348 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:04:11.478 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:04:11.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:11.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 4
17-03-17 22:04:11.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=4, R2=6, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=925, R2=946, Total=1871. Warn if over 250 bubbles per interval.
17-03-17 22:04:12.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:12.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:12.418 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:04:12.418 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:04:12.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:12.578 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:04:12.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:04:12.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:12.738 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:04:12.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:04:12.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:04:12.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:04:12.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:13.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:13.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:13.358 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 22:04:13.358 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:04:13.358 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 65° ===================
17-03-17 22:04:13.358 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 22:04:13.358 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 22:04:13.358 -07 000000433 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:04:13.368 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:04:13.368 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:04:13.368 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-17 22:04:13.378 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:04:13.378 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 65° ===================
17-03-17 22:04:13.378 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:04:13.378 -07 000000610 INF: WaitCommand(30000) start
17-03-17 22:04:14.438 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.974486,
17-03-17 22:04:16.938 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 22:04:16.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=926, R2=946, Total=1872. Warn if over 250 bubbles per interval.
17-03-17 22:04:19.798 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.975845,
17-03-17 22:04:21.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:04:21.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=926, R2=947, Total=1873. Warn if over 250 bubbles per interval.
17-03-17 22:04:25.158 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.99219,
17-03-17 22:04:26.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:04:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=926, R2=947, Total=1873. Warn if over 250 bubbles per interval.
17-03-17 22:04:30.518 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.039839,
17-03-17 22:04:31.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:04:31.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=926, R2=947, Total=1873. Warn if over 250 bubbles per interval.
17-03-17 22:04:35.878 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.030322,
17-03-17 22:04:36.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:04:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=926, R2=947, Total=1873. Warn if over 250 bubbles per interval.
17-03-17 22:04:41.238 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.0344,
17-03-17 22:04:41.938 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:04:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=926, R2=947, Total=1873. Warn if over 250 bubbles per interval.
17-03-17 22:04:43.388 -07 000000610 INF: WaitCommand(30000) end
17-03-17 22:04:43.388 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:04:43.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 22:04:43.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:43.518 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 22:04:43.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 22:04:43.518 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:04:43.648 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 22:04:43.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:44.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:44.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:44.258 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 22:04:44.258 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:04:44.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:44.418 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:04:44.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:04:44.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:04:44.578 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:04:44.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:04:44.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:04:44.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:04:44.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:45.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:45.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:45.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:04:45.198 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:04:45.198 -07 000000476 INF: WaitCommand(30000) start
17-03-17 22:04:45.198 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:04:45.198 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:04:46.418 -07 000000547 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:04:46.418 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 22:04:46.448 -07 000000547 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 22:04:46.448 -07 000000547 INF: LanePump: Current Position of Pump is: 1920
17-03-17 22:04:46.578 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:04:46.598 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.007176,
17-03-17 22:04:46.618 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:46.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 22:04:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=947, Total=1876. Warn if over 250 bubbles per interval.
17-03-17 22:04:48.958 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:48.988 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:04:49.408 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 22:04:49.438 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:04:49.438 -07 000000547 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 22:04:49.438 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:04:49.438 -07 000000547 INF: ===================  ===================
17-03-17 22:04:51.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:04:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=948, Total=1877. Warn if over 250 bubbles per interval.
17-03-17 22:04:51.958 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.000345,
17-03-17 22:04:56.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 22:04:56.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=950, Total=1879. Warn if over 250 bubbles per interval.
17-03-17 22:04:57.318 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.990831,
17-03-17 22:05:01.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:01.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=950, Total=1879. Warn if over 250 bubbles per interval.
17-03-17 22:05:02.678 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.027603,
17-03-17 22:05:06.938 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=950, Total=1879. Warn if over 250 bubbles per interval.
17-03-17 22:05:08.038 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.999021,
17-03-17 22:05:11.938 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:11.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=950, Total=1879. Warn if over 250 bubbles per interval.
17-03-17 22:05:13.398 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.007176,
17-03-17 22:05:15.208 -07 000000476 INF: WaitCommand(30000) end
17-03-17 22:05:15.208 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 22° ===================
17-03-17 22:05:15.208 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 22:05:15.208 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 22:05:15.208 -07 000000448 INF: FPGA: Recv TEC2TEMP 
17-03-17 22:05:15.218 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:05:15.218 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 22:05:15.218 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 22:05:15.228 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:15.228 -07 000000610 INF: =================== Cycle #59, Flow Cell Temp 22° ===================
17-03-17 22:05:15.228 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:05:15.228 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:05:15.228 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 22:05:15.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:15.268 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 22:05:15.268 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 22:05:15.268 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:05:15.398 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 22:05:15.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:16.938 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:16.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=929, R2=950, Total=1879. Warn if over 250 bubbles per interval.
17-03-17 22:05:18.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:18.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:18.758 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.988112,
17-03-17 22:05:19.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:19.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:19.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:19.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:19.498 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 22:05:19.498 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:05:19.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:19.658 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:05:19.658 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:05:19.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:19.818 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:05:19.818 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:05:19.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:05:19.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:05:19.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:20.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:20.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:20.438 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:05:20.438 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:05:21.658 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:05:21.658 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 22:05:21.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:05:21.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:05:21.678 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 22:05:21.678 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 22:05:21.828 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:05:21.848 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:05:21.848 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:05:21.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:05:21.918 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:05:21.918 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:05:21.938 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 22:05:21.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=951, Total=1881. Warn if over 250 bubbles per interval.
17-03-17 22:05:22.018 -07 000000610 INF: =================== Cycle #59, Pumping Reagent USM (2) ===================
17-03-17 22:05:22.018 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 22:05:22.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:22.048 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 22:05:22.048 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 22:05:22.048 -07 000000610 INF: =================== Cycle #59, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 22:05:22.178 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 22:05:22.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:23.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:23.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:24.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:24.118 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.978563,
17-03-17 22:05:24.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:24.138 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 22:05:24.138 -07 000000610 INF: =================== Cycle #59, Pumping Reagent USM (2) ===================
17-03-17 22:05:24.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:24.298 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:05:24.298 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:05:24.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:24.458 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:05:24.458 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:05:24.458 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:05:24.588 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:05:24.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:25.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:25.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:25.078 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:05:25.078 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:05:26.298 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 22:05:26.298 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 22:05:26.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:05:26.318 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 22:05:26.318 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 22:05:26.318 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 22:05:26.468 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:05:26.488 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 22:05:26.488 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 22:05:26.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:05:26.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:05:26.558 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 22:05:26.658 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:05:26.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 22:05:26.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:26.688 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 22:05:26.688 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 22:05:26.688 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 22:05:26.818 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 22:05:26.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:26.938 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 22:05:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:27.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:27.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:27.758 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 22:05:27.758 -07 000000610 INF: =================== Cycle #59, Pumping Reagent PR2 (3) ===================
17-03-17 22:05:27.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:27.918 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:05:27.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:05:28.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 22:05:28.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:05:28.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:05:28.078 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 22:05:28.208 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 22:05:28.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:28.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:28.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:28.698 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 22:05:28.698 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:05:28.698 -07 000000576 INF: WaitCommand(10000) start
17-03-17 22:05:28.698 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:05:28.698 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 22:05:29.478 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.988112,
17-03-17 22:05:29.918 -07 000000475 INF: AsyncDelayTimer waited 1216ms
17-03-17 22:05:29.918 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 22:05:29.948 -07 000000475 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 22:05:29.948 -07 000000475 INF: LanePump: Current Position of Pump is: 1110
17-03-17 22:05:30.078 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 22:05:30.118 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:31.648 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:31.678 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 22:05:31.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:31.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:32.098 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 22:05:32.128 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 22:05:32.128 -07 000000475 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 22:05:32.128 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 22:05:32.128 -07 000000475 INF: ===================  ===================
17-03-17 22:05:34.838 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.008536,
17-03-17 22:05:36.938 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:38.708 -07 000000576 INF: WaitCommand(10000) end
17-03-17 22:05:38.708 -07 000000610 INF: =================== Cycle #59, Imaging ===================
17-03-17 22:05:38.708 -07 000000610 INF: Imaging Cycle 59: ScanTilesCommand Cycle 59 time start.
17-03-17 22:05:38.708 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 22:05:38.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:05:38.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 22:05:38.738 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 22:05:38.738 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 22:05:39.038 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 22:05:39.058 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 22:05:39.058 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 22:05:39.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 22:05:39.128 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 22:05:39.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:39.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:39.128 -07 000000475 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 22:05:39.128 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:39.128 -07 000000475 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 22:05:39.128 -07 000000576 INF: FPGA: Recv EXLED1ON 
17-03-17 22:05:39.138 -07 000000475 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:05:39.138 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 22:05:39.138 -07 000000576 INF: FPGA: Recv EXLED1ADCR 23224
17-03-17 22:05:39.148 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:39.148 -07 000000475 INF: RedLED: Using Red data: Photodiode ADC 23224 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.4 mW
17-03-17 22:05:39.148 -07 000000475 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 22:05:39.148 -07 000000576 INF: FPGA: Recv EXLED1OFF 
17-03-17 22:05:39.158 -07 000000475 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:39.158 -07 000000475 INF: RedLED: LED was on for 20 ms
17-03-17 22:05:39.158 -07 000000475 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 22:05:39.158 -07 000000475 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 22:05:39.158 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:39.158 -07 000000475 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 22:05:39.158 -07 000000547 INF: FPGA: Recv EXLED2ON 
17-03-17 22:05:39.168 -07 000000475 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:05:39.168 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:05:39.168 -07 000000547 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 22:05:39.178 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:39.178 -07 000000475 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 22:05:39.178 -07 000000475 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 22:05:39.178 -07 000000480 INF: FPGA: Recv EXLED2OFF 
17-03-17 22:05:39.188 -07 000000475 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:39.188 -07 000000475 INF: GreenLED: LED was on for 20 ms
17-03-17 22:05:39.188 -07 000000475 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 22:05:39.188 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:05:39.188 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 22:05:39.198 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:05:39.198 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 22:05:39.698 -07 000000576 INF: FPGA: Recv EMOUT
17-03-17 22:05:39.698 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 22:05:39.698 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 22:05:39.698 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 22:05:39.708 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:05:39.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:05:39.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127865377065563. ------
17-03-17 22:05:39.708 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:39.708 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17956 mm
17-03-17 22:05:39.708 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:05:39.708 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 39225, sync = True, waitForSettling = False)
17-03-17 22:05:39.708 -07 000000480 INF: Z Motor: Moving to -0.179561 mm, started at -0.127865 mm, distance = -51.70 um
17-03-17 22:05:39.718 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:39.718 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:05:39.718 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:05:39.718 -07 000000475 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 22:05:39.718 -07 000000480 INF: FPGA: Xmit ZDACW 39225\n [Z Motor]
17-03-17 22:05:39.718 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:05:39.728 -07 000000480 INF: FPGA: 'ZDACW 39225' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:39.728 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:39.728 -07 000000433 INF: FPGA: Recv YRDPOS 154379
17-03-17 22:05:39.738 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:05:39.738 -07 000000475 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:39.738 -07 000000475 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 22:05:39.738 -07 000000475 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:05:39.738 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:05:39.748 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:39.748 -07 000000547 INF: FPGA: Recv ZDACR 39225
17-03-17 22:05:39.758 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:39.758 -07 000000480 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 22:05:39.758 -07 000000475 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:05:39.938 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:05:39.938 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 22:05:40.198 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.015368,
17-03-17 22:05:41.438 -07 000000547 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 22:05:41.438 -07 000000475 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1706 ms overall
17-03-17 22:05:41.438 -07 000000475 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:05:41.438 -07 000000475 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24775 steps (15.484 mm). Slippage = 0.017 mm (0.00%).
17-03-17 22:05:41.438 -07 000000475 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-17 22:05:41.938 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:44.288 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:44.288 -07 000000547 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:05:44.298 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.298 -07 000000475 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:44.318 -07 000000475 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:05:44.318 -07 000000475 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 22:05:44.318 -07 000000475 INF: Y Motor: Moved to 59.9106 after 4604 ms
17-03-17 22:05:44.318 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179561 mm (DAC = 39225)
17-03-17 22:05:44.318 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.328 -07 000000576 INF: FPGA: Recv ZSGSRD 37252
17-03-17 22:05:44.328 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:05:44.328 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.328 -07 000000623 INF: FPGA: Recv ZSGSRD 37243
17-03-17 22:05:44.338 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:05:44.338 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.338 -07 000000576 INF: FPGA: Recv ZSGSRD 37239
17-03-17 22:05:44.348 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.348 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.348 -07 000000576 INF: FPGA: Recv ZSGSRD 37244
17-03-17 22:05:44.358 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.358 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.358 -07 000000576 INF: FPGA: Recv ZSGSRD 37238
17-03-17 22:05:44.368 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.368 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.368 -07 000000576 INF: FPGA: Recv ZSGSRD 37243
17-03-17 22:05:44.378 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.378 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.378 -07 000000576 INF: FPGA: Recv ZSGSRD 37241
17-03-17 22:05:44.388 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.388 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.388 -07 000000576 INF: FPGA: Recv ZSGSRD 37244
17-03-17 22:05:44.398 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.398 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.398 -07 000000576 INF: FPGA: Recv ZSGSRD 37239
17-03-17 22:05:44.408 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.408 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:44.408 -07 000000576 INF: FPGA: Recv ZSGSRD 37241
17-03-17 22:05:44.418 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.418 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:44.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 33721
17-03-17 22:05:44.428 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:44.428 -07 000000561 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.985 V. Piezo Error = -7.8 V.
17-03-17 22:05:44.428 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37242 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37242 (-178.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37238 (-178.7 uncal um), Max = 37252 (-178.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:05:44.428 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37242, posNoise = 10, negNoise = 4
17-03-17 22:05:44.428 -07 000000561 INF: Z Motor: After move to -0.179561, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:44.428 -07 000000561 INF: Z Motor: Settle wait time = 4608 ms, measure time = 102 ms (allowed 150 ms), total time = 4710 ms
17-03-17 22:05:44.428 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:05:44.478 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-17 22:05:44.478 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:05:44.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:44.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:44.478 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:44.478 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:44.478 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:05:44.478 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:44.478 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:44.478 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:05:44.508 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:05:44.508 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:05:44.508 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:05:44.508 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:05:44.518 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:05:44.518 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 22:05:44.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:05:44.568 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:05:44.768 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:05:44.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:05:44.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:05:44.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:05:44.808 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:05:44.808 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:05:44.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 22:05:44.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:05:44.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:44.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:05:44.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:05:45.008 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:45.008 -07 000000475 INF: Image SNR check: start
17-03-17 22:05:45.008 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:45.018 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:05:45.018 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:05:45.018 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=58.33]
17-03-17 22:05:45.018 -07 000000475 INF: Autofocus start
17-03-17 22:05:45.018 -07 000000475 INF: MeasureProfile start
17-03-17 22:05:45.028 -07 000000475 INF: MeasureProfile done
17-03-17 22:05:45.028 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:05:45.028 -07 000000475 INF: Autofocus finished
17-03-17 22:05:45.218 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:05:45.218 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:05:45.218 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179573860594596. ----------
17-03-17 22:05:45.218 -07 000000610 INF: Cycle	59	Tile	1	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:05:45.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37722, sync = True, waitForSettling = True)
17-03-17 22:05:45.228 -07 000000610 INF: Z Motor: Moving to -0.172680 mm, started at -0.179574 mm, distance = 6.89 um
17-03-17 22:05:45.228 -07 000000610 INF: FPGA: Xmit ZDACW 37722\n [Z Motor]
17-03-17 22:05:45.228 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:05:45.238 -07 000000610 INF: FPGA: 'ZDACW 37722' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:05:45.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:45.248 -07 000000551 INF: FPGA: Recv ZDACR 37722
17-03-17 22:05:45.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:05:45.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:05:45.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.408 -07 000000551 INF: FPGA: Recv ZSGSRD 36172
17-03-17 22:05:45.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.418 -07 000000448 INF: FPGA: Recv ZSGSRD 36178
17-03-17 22:05:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.428 -07 000000462 INF: FPGA: Recv ZSGSRD 36171
17-03-17 22:05:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.438 -07 000000547 INF: FPGA: Recv ZSGSRD 36168
17-03-17 22:05:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.448 -07 000000547 INF: FPGA: Recv ZSGSRD 36171
17-03-17 22:05:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.458 -07 000000462 INF: FPGA: Recv ZSGSRD 36171
17-03-17 22:05:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.468 -07 000000547 INF: FPGA: Recv ZSGSRD 36174
17-03-17 22:05:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.478 -07 000000462 INF: FPGA: Recv ZSGSRD 36168
17-03-17 22:05:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.488 -07 000000475 INF: FPGA: Recv ZSGSRD 36178
17-03-17 22:05:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:45.498 -07 000000547 INF: FPGA: Recv ZSGSRD 36175
17-03-17 22:05:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:45.508 -07 000000475 INF: FPGA: Recv ZPIEZORD 32317
17-03-17 22:05:45.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:45.518 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.5 V.
17-03-17 22:05:45.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36173 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36168 (-171.8 uncal um), Max = 36178 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:05:45.518 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36173, posNoise = 5, negNoise = 5
17-03-17 22:05:45.518 -07 000000610 INF: Z Motor: After move to -0.172680, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:45.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 22:05:45.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:45.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:45.518 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:45.518 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:05:45.518 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:05:45.518 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:45.518 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:05:45.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:45.518 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:05:45.518 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:05:45.518 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:45.518 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:05:45.528 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:05:45.528 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:05:45.538 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:05:45.538 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:05:45.548 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 22:05:45.548 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:05:45.548 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:05:45.548 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:05:45.558 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.999021,
17-03-17 22:05:45.558 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:05:45.558 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 22:05:45.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37899 150\n [Camera]
17-03-17 22:05:45.778 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 22:05:46.218 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:05:46.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:05:46.218 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:46.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:05:46.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:05:46.228 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:46.228 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:46.228 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) start.
17-03-17 22:05:46.228 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:46.228 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) start.
17-03-17 22:05:46.408 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37899 830
17-03-17 22:05:46.558 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:05:46.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2432798312, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:05:46.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:05:46.618 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:46.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1459157304, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:05:46.618 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:05:46.618 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:46.628 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:05:46.628 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:46.628 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:05:46.628 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:05:46.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:05:46.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:05:46.778 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:46.778 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:46.778 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 22:05:46.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:05:46.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:05:46.778 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:46.778 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:46.778 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:05:46.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:46.968 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:05:46.968 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:05:46.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37899 150' command took 2 ms to send, 1384 ms to get response, and 1406 ms overall
17-03-17 22:05:46.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:05:46.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172706377815054. ------
17-03-17 22:05:46.968 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:46.978 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17895 mm
17-03-17 22:05:46.978 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:05:46.978 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:46.978 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:05:46.978 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 22:05:46.978 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 39091, sync = True, waitForSettling = False)
17-03-17 22:05:46.978 -07 000000475 INF: Z Motor: Moving to -0.178947 mm, started at -0.172706 mm, distance = -6.24 um
17-03-17 22:05:46.988 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:05:46.988 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:05:46.998 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:46.998 -07 000000476 INF: FPGA: Recv YRDPOS 122697
17-03-17 22:05:47.008 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:05:47.008 -07 000000623 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:47.008 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:05:47.008 -07 000000623 INF: Y Motor: Moving 1331 steps2
17-03-17 22:05:47.008 -07 000000475 INF: FPGA: Xmit ZDACW 39091\n [Z Motor]
17-03-17 22:05:47.008 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:05:47.018 -07 000000475 INF: FPGA: 'ZDACW 39091' command took 1 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 22:05:47.018 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:47.018 -07 000000576 INF: FPGA: Recv ZDACR 39091
17-03-17 22:05:47.028 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:05:47.028 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:47.028 -07 000000475 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 22:05:47.178 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 22:05:47.188 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:05:47.188 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:47.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 22:05:47.188 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:05:47.188 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:47.188 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:05:47.188 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:05:47.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 22:05:47.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:05:47.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:05:47.198 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 22:05:47.398 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:05:47.398 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:05:47.428 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:47.438 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:05:47.448 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:47.448 -07 000000623 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:47.448 -07 000000623 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:05:47.448 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 22:05:48.398 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:48.398 -07 000000433 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:05:48.408 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:48.408 -07 000000623 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:48.428 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:05:48.428 -07 000000623 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:05:48.428 -07 000000623 INF: Y Motor: Moved to 60.7329 after 1452 ms (table move)
17-03-17 22:05:48.438 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178947 mm (DAC = 39091)
17-03-17 22:05:48.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.458 -07 000000576 INF: FPGA: Recv ZSGSRD 37137
17-03-17 22:05:48.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:48.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.488 -07 000000480 INF: FPGA: Recv ZSGSRD 37149
17-03-17 22:05:48.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:48.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.498 -07 000000462 INF: FPGA: Recv ZSGSRD 37141
17-03-17 22:05:48.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.508 -07 000000623 INF: FPGA: Recv ZSGSRD 37137
17-03-17 22:05:48.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.518 -07 000000462 INF: FPGA: Recv ZSGSRD 37145
17-03-17 22:05:48.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.528 -07 000000576 INF: FPGA: Recv ZSGSRD 37149
17-03-17 22:05:48.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.538 -07 000000480 INF: FPGA: Recv ZSGSRD 37151
17-03-17 22:05:48.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.548 -07 000000547 INF: FPGA: Recv ZSGSRD 37143
17-03-17 22:05:48.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.558 -07 000000480 INF: FPGA: Recv ZSGSRD 37147
17-03-17 22:05:48.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:48.568 -07 000000547 INF: FPGA: Recv ZSGSRD 37151
17-03-17 22:05:48.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.578 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:48.578 -07 000000475 INF: FPGA: Recv ZPIEZORD 33626
17-03-17 22:05:48.588 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:48.588 -07 000000512 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.965 V. Piezo Error = -7.8 V.
17-03-17 22:05:48.588 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37145 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37146 (-178.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37137 (-178.0 uncal um), Max = 37151 (-178.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:05:48.588 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37145, posNoise = 6, negNoise = 8
17-03-17 22:05:48.588 -07 000000512 INF: Z Motor: After move to -0.178947, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:48.588 -07 000000512 INF: Z Motor: Settle wait time = 1455 ms, measure time = 150 ms (allowed 150 ms), total time = 1605 ms
17-03-17 22:05:48.588 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 22:05:48.588 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:05:48.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:48.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:48.588 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:48.588 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:48.588 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:05:48.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:48.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:48.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:05:48.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:05:48.598 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:05:48.608 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:05:48.608 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:05:48.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:05:48.658 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:05:48.858 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:05:48.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:05:48.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:05:48.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) start.
17-03-17 22:05:48.898 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:05:48.898 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:05:48.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 22:05:48.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:05:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:05:48.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 22:05:48.998 -07 000000576 INF: Autofocus start
17-03-17 22:05:48.998 -07 000000576 INF: MeasureProfile start
17-03-17 22:05:48.998 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:48.998 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:49.008 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:05:49.008 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:05:49.008 -07 000000576 INF: MeasureProfile done
17-03-17 22:05:49.008 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:05:49.008 -07 000000576 INF: Autofocus finished
17-03-17 22:05:49.208 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:05:49.208 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:05:49.208 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178950712016846. ----------
17-03-17 22:05:49.218 -07 000000610 INF: Cycle	59	Tile	2	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:05:49.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37605, sync = True, waitForSettling = True)
17-03-17 22:05:49.218 -07 000000610 INF: Z Motor: Moving to -0.172145 mm, started at -0.178951 mm, distance = 6.81 um
17-03-17 22:05:49.218 -07 000000610 INF: FPGA: Xmit ZDACW 37605\n [Z Motor]
17-03-17 22:05:49.218 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:05:49.228 -07 000000610 INF: FPGA: 'ZDACW 37605' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:05:49.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:49.228 -07 000000476 INF: FPGA: Recv ZDACR 37605
17-03-17 22:05:49.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:05:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.388 -07 000000476 INF: FPGA: Recv ZSGSRD 36092
17-03-17 22:05:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.398 -07 000000475 INF: FPGA: Recv ZSGSRD 36085
17-03-17 22:05:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.408 -07 000000623 INF: FPGA: Recv ZSGSRD 36089
17-03-17 22:05:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.418 -07 000000512 INF: FPGA: Recv ZSGSRD 36084
17-03-17 22:05:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.428 -07 000000476 INF: FPGA: Recv ZSGSRD 36087
17-03-17 22:05:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.438 -07 000000512 INF: FPGA: Recv ZSGSRD 36085
17-03-17 22:05:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36089
17-03-17 22:05:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.458 -07 000000512 INF: FPGA: Recv ZSGSRD 36086
17-03-17 22:05:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.468 -07 000000512 INF: FPGA: Recv ZSGSRD 36089
17-03-17 22:05:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:49.478 -07 000000476 INF: FPGA: Recv ZSGSRD 36090
17-03-17 22:05:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:49.488 -07 000000476 INF: FPGA: Recv ZPIEZORD 32181
17-03-17 22:05:49.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:49.498 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.6 V.
17-03-17 22:05:49.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36088 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:05:49.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36088, posNoise = 4, negNoise = 4
17-03-17 22:05:49.498 -07 000000610 INF: Z Motor: After move to -0.172145, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:49.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:05:49.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:49.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:49.498 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:49.498 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:49.498 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:05:49.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:49.498 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:49.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:05:49.498 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:05:49.498 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:05:49.498 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:05:49.498 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:05:49.498 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:05:49.508 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:05:49.508 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:05:49.508 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:05:49.518 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:05:49.518 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:05:49.518 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 22:05:49.518 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:05:49.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37782 150\n [Camera]
17-03-17 22:05:49.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:05:50.168 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:05:50.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:05:50.168 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:50.168 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:50.168 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:05:50.178 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:05:50.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:05:50.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:50.178 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:50.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:05:50.358 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37782 830
17-03-17 22:05:50.508 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:05:50.568 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:05:50.568 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:05:50.568 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:50.578 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:50.578 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:05:50.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:05:50.578 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:05:50.578 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:50.578 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:50.588 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:05:50.728 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:05:50.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:05:50.728 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:50.848 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:05:50.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:05:50.848 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:50.858 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:50.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:05:50.858 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:50.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:05:50.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:05:50.918 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:05:50.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37782 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-17 22:05:50.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:05:50.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172160319783004. ------
17-03-17 22:05:50.928 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.008536,
17-03-17 22:05:50.928 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17842 mm
17-03-17 22:05:50.928 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:05:50.928 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:05:50.928 -07 000000382 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:05:50.928 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38977, sync = True, waitForSettling = False)
17-03-17 22:05:50.928 -07 000000475 INF: Z Motor: Moving to -0.178425 mm, started at -0.172160 mm, distance = -6.26 um
17-03-17 22:05:50.938 -07 000000475 INF: FPGA: Xmit ZDACW 38977\n [Z Motor]
17-03-17 22:05:50.938 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:05:50.948 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:50.948 -07 000000475 INF: FPGA: 'ZDACW 38977' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:05:50.948 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:50.958 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:50.958 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:50.958 -07 000000547 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:05:50.968 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 22:05:50.968 -07 000000382 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:50.968 -07 000000382 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:05:50.968 -07 000000382 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:05:50.978 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:50.978 -07 000000551 INF: FPGA: Recv ZDACR 38977
17-03-17 22:05:50.988 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 22:05:50.988 -07 000000475 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 22:05:50.988 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:05:50.998 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:05:51.188 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:05:51.188 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:05:51.248 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:05:51.248 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:05:51.248 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:51.248 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:05:51.258 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:05:51.258 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:51.258 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:51.258 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 22:05:51.258 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:51.268 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 22:05:51.378 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:05:51.378 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 405 ms overall
17-03-17 22:05:51.408 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:51.418 -07 000000438 INF: FPGA: Recv YRDPOS 126082
17-03-17 22:05:51.428 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:51.428 -07 000000382 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:51.428 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:05:51.428 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.840 mm, average velocity = 2.073 mm/sec
17-03-17 22:05:51.938 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:52.378 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:52.378 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:05:52.388 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:52.388 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:52.408 -07 000000382 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:05:52.408 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:05:52.408 -07 000000382 INF: Y Motor: Moved to 61.5640 after 1481 ms (table move)
17-03-17 22:05:52.408 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178425 mm (DAC = 38977)
17-03-17 22:05:52.408 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.418 -07 000000438 INF: FPGA: Recv ZSGSRD 37073
17-03-17 22:05:52.418 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:05:52.418 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.418 -07 000000576 INF: FPGA: Recv ZSGSRD 37060
17-03-17 22:05:52.428 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:05:52.428 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.428 -07 000000462 INF: FPGA: Recv ZSGSRD 37069
17-03-17 22:05:52.438 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.438 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.438 -07 000000623 INF: FPGA: Recv ZSGSRD 37066
17-03-17 22:05:52.448 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.448 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.448 -07 000000561 INF: FPGA: Recv ZSGSRD 37067
17-03-17 22:05:52.458 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.458 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.458 -07 000000551 INF: FPGA: Recv ZSGSRD 37057
17-03-17 22:05:52.468 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.468 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.468 -07 000000476 INF: FPGA: Recv ZSGSRD 37060
17-03-17 22:05:52.478 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.478 -07 000000561 INF: FPGA: Recv ZSGSRD 37057
17-03-17 22:05:52.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.488 -07 000000476 INF: FPGA: Recv ZSGSRD 37063
17-03-17 22:05:52.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:52.498 -07 000000551 INF: FPGA: Recv ZSGSRD 37064
17-03-17 22:05:52.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.508 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:52.508 -07 000000476 INF: FPGA: Recv ZPIEZORD 33503
17-03-17 22:05:52.518 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:52.518 -07 000000448 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.948 V. Piezo Error = -7.9 V.
17-03-17 22:05:52.518 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37064 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37064 (-177.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37057 (-177.5 uncal um), Max = 37073 (-177.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:05:52.518 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37064, posNoise = 9, negNoise = 7
17-03-17 22:05:52.518 -07 000000448 INF: Z Motor: After move to -0.178425, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:52.518 -07 000000448 INF: Z Motor: Settle wait time = 1482 ms, measure time = 102 ms (allowed 150 ms), total time = 1584 ms
17-03-17 22:05:52.518 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:05:52.568 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-17 22:05:52.568 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:05:52.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:52.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:52.568 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:52.568 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:52.568 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:05:52.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:52.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:52.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:05:52.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:05:52.578 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:05:52.578 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:05:52.578 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:05:52.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:05:52.628 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:05:52.828 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:05:52.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:05:52.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:05:52.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:05:52.868 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:05:52.868 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:05:52.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:05:52.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:05:52.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:52.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:05:52.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:05:52.968 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:52.968 -07 000000475 INF: Autofocus start
17-03-17 22:05:52.968 -07 000000475 INF: MeasureProfile start
17-03-17 22:05:52.978 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:52.978 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 22:05:52.978 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:05:52.988 -07 000000475 INF: MeasureProfile done
17-03-17 22:05:52.988 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:05:52.988 -07 000000475 INF: Autofocus finished
17-03-17 22:05:53.178 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:05:53.178 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:05:53.178 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178430350833363. ----------
17-03-17 22:05:53.188 -07 000000610 INF: Cycle	59	Tile	3	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:05:53.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37492, sync = True, waitForSettling = True)
17-03-17 22:05:53.188 -07 000000610 INF: Z Motor: Moving to -0.171627 mm, started at -0.178430 mm, distance = 6.80 um
17-03-17 22:05:53.188 -07 000000610 INF: FPGA: Xmit ZDACW 37492\n [Z Motor]
17-03-17 22:05:53.188 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:05:53.198 -07 000000610 INF: FPGA: 'ZDACW 37492' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:05:53.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:53.198 -07 000000382 INF: FPGA: Recv ZDACR 37492
17-03-17 22:05:53.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:05:53.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.358 -07 000000475 INF: FPGA: Recv ZSGSRD 36005
17-03-17 22:05:53.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:53.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.368 -07 000000623 INF: FPGA: Recv ZSGSRD 36008
17-03-17 22:05:53.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.378 -07 000000547 INF: FPGA: Recv ZSGSRD 36011
17-03-17 22:05:53.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.388 -07 000000448 INF: FPGA: Recv ZSGSRD 36009
17-03-17 22:05:53.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.398 -07 000000475 INF: FPGA: Recv ZSGSRD 36004
17-03-17 22:05:53.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.408 -07 000000424 INF: FPGA: Recv ZSGSRD 36018
17-03-17 22:05:53.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.418 -07 000000480 INF: FPGA: Recv ZSGSRD 36013
17-03-17 22:05:53.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.428 -07 000000480 INF: FPGA: Recv ZSGSRD 36005
17-03-17 22:05:53.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.438 -07 000000424 INF: FPGA: Recv ZSGSRD 36005
17-03-17 22:05:53.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:53.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36004
17-03-17 22:05:53.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:53.458 -07 000000480 INF: FPGA: Recv ZPIEZORD 32040
17-03-17 22:05:53.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:53.468 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.721 V. Piezo Error = -8.8 V.
17-03-17 22:05:53.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36008 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36006 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36004 (-170.7 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:05:53.468 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36008, posNoise = 10, negNoise = 4
17-03-17 22:05:53.468 -07 000000610 INF: Z Motor: After move to -0.171627, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:53.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:05:53.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:53.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:53.468 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:53.468 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:53.468 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:05:53.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:53.468 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:53.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:05:53.468 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:05:53.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:05:53.478 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:05:53.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:05:53.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:05:53.478 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:05:53.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:05:53.478 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:05:53.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:05:53.488 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:05:53.488 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:05:53.488 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:05:53.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37668 150\n [Camera]
17-03-17 22:05:53.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:05:54.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:05:54.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:05:54.138 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:54.138 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:54.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) start.
17-03-17 22:05:54.138 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:05:54.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:05:54.138 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:54.258 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:54.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:05:54.328 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37668 830
17-03-17 22:05:54.478 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:05:54.528 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1425127184, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 22:05:54.528 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:05:54.528 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:54.528 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:54.528 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:05:54.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:05:54.628 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:05:54.628 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:54.638 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:05:54.638 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 22:05:54.698 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:05:54.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:05:54.698 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:54.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:05:54.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:05:54.698 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:54.698 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:54.698 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460549448, 0x0, 418435064) start.
17-03-17 22:05:54.698 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:54.698 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:05:54.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:05:54.888 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:05:54.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37668 150' command took 2 ms to send, 1383 ms to get response, and 1397 ms overall
17-03-17 22:05:54.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:05:54.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171646382811663. ------
17-03-17 22:05:54.888 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:54.888 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17796 mm
17-03-17 22:05:54.888 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:05:54.898 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:54.898 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:05:54.898 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:05:54.898 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:05:54.898 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:05:54.898 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38875, sync = True, waitForSettling = False)
17-03-17 22:05:54.898 -07 000000448 INF: Z Motor: Moving to -0.177958 mm, started at -0.171646 mm, distance = -6.31 um
17-03-17 22:05:54.908 -07 000000448 INF: FPGA: Xmit ZDACW 38875\n [Z Motor]
17-03-17 22:05:54.908 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:05:54.918 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:54.918 -07 000000448 INF: FPGA: 'ZDACW 38875' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 22:05:54.918 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:05:54.928 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:54.928 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:05:54.928 -07 000000480 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:54.928 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:05:54.928 -07 000000480 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:05:54.928 -07 000000551 INF: FPGA: Recv ZDACR 38875
17-03-17 22:05:54.938 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:05:54.938 -07 000000448 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 22:05:54.938 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:05:55.098 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:05:55.098 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 22:05:55.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:05:55.098 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:05:55.098 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:55.098 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460549448, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:05:55.098 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:05:55.098 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:55.108 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:05:55.108 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 22:05:55.108 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:05:55.118 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:05:55.308 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:05:55.308 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:05:55.348 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:55.358 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:05:55.358 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:05:55.358 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:55.358 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:05:55.358 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 22:05:56.308 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:56.308 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:05:56.318 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:56.318 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:56.338 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:05:56.338 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:05:56.338 -07 000000480 INF: Y Motor: Moved to 62.3955 after 1439 ms (table move)
17-03-17 22:05:56.338 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177958 mm (DAC = 38875)
17-03-17 22:05:56.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.348 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.016692,
17-03-17 22:05:56.348 -07 000000576 INF: FPGA: Recv ZSGSRD 36987
17-03-17 22:05:56.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:05:56.378 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.378 -07 000000551 INF: FPGA: Recv ZSGSRD 36993
17-03-17 22:05:56.388 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:56.388 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.388 -07 000000551 INF: FPGA: Recv ZSGSRD 36998
17-03-17 22:05:56.398 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.418 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.418 -07 000000382 INF: FPGA: Recv ZSGSRD 36990
17-03-17 22:05:56.428 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:56.428 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.428 -07 000000561 INF: FPGA: Recv ZSGSRD 36992
17-03-17 22:05:56.438 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.438 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.438 -07 000000561 INF: FPGA: Recv ZSGSRD 36996
17-03-17 22:05:56.448 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.448 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.448 -07 000000576 INF: FPGA: Recv ZSGSRD 37000
17-03-17 22:05:56.458 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.458 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.458 -07 000000576 INF: FPGA: Recv ZSGSRD 37000
17-03-17 22:05:56.468 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.468 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.468 -07 000000576 INF: FPGA: Recv ZSGSRD 36989
17-03-17 22:05:56.478 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.478 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:56.478 -07 000000512 INF: FPGA: Recv ZSGSRD 36986
17-03-17 22:05:56.488 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.488 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:56.488 -07 000000512 INF: FPGA: Recv ZPIEZORD 33383
17-03-17 22:05:56.498 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:56.498 -07 000000476 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.0 V.
17-03-17 22:05:56.498 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36993 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36992 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36986 (-177.0 uncal um), Max = 37000 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:05:56.498 -07 000000476 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36993, posNoise = 7, negNoise = 7
17-03-17 22:05:56.498 -07 000000476 INF: Z Motor: After move to -0.177958, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:56.498 -07 000000476 INF: Z Motor: Settle wait time = 1443 ms, measure time = 153 ms (allowed 150 ms), total time = 1596 ms
17-03-17 22:05:56.498 -07 000000476 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 22:05:56.498 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 22:05:56.498 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:05:56.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:56.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:56.498 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:56.498 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:56.498 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:05:56.498 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:56.508 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:56.508 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:05:56.508 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:05:56.508 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:05:56.518 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:05:56.518 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:05:56.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:05:56.568 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:05:56.768 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:05:56.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:05:56.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:05:56.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:05:56.808 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:05:56.808 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:05:56.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 22:05:56.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:05:56.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:56.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:05:56.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:05:56.908 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:56.908 -07 000000424 INF: Autofocus start
17-03-17 22:05:56.908 -07 000000424 INF: MeasureProfile start
17-03-17 22:05:56.908 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:56.918 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:05:56.918 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:05:56.928 -07 000000424 INF: MeasureProfile done
17-03-17 22:05:56.928 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:05:56.928 -07 000000424 INF: Autofocus finished
17-03-17 22:05:56.938 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:05:56.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:05:57.118 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:05:57.118 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:05:57.128 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177974231771298. ----------
17-03-17 22:05:57.128 -07 000000610 INF: Cycle	59	Tile	4	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:05:57.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37390, sync = True, waitForSettling = True)
17-03-17 22:05:57.128 -07 000000610 INF: Z Motor: Moving to -0.171160 mm, started at -0.177974 mm, distance = 6.81 um
17-03-17 22:05:57.128 -07 000000610 INF: FPGA: Xmit ZDACW 37390\n [Z Motor]
17-03-17 22:05:57.128 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:05:57.138 -07 000000610 INF: FPGA: 'ZDACW 37390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:05:57.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:57.138 -07 000000623 INF: FPGA: Recv ZDACR 37390
17-03-17 22:05:57.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:05:57.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.298 -07 000000512 INF: FPGA: Recv ZSGSRD 35936
17-03-17 22:05:57.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:05:57.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.308 -07 000000512 INF: FPGA: Recv ZSGSRD 35937
17-03-17 22:05:57.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.318 -07 000000623 INF: FPGA: Recv ZSGSRD 35928
17-03-17 22:05:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35932
17-03-17 22:05:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.338 -07 000000623 INF: FPGA: Recv ZSGSRD 35939
17-03-17 22:05:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.348 -07 000000512 INF: FPGA: Recv ZSGSRD 35934
17-03-17 22:05:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.358 -07 000000512 INF: FPGA: Recv ZSGSRD 35933
17-03-17 22:05:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.368 -07 000000512 INF: FPGA: Recv ZSGSRD 35934
17-03-17 22:05:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.378 -07 000000512 INF: FPGA: Recv ZSGSRD 35935
17-03-17 22:05:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:05:57.388 -07 000000512 INF: FPGA: Recv ZSGSRD 35939
17-03-17 22:05:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:05:57.398 -07 000000623 INF: FPGA: Recv ZPIEZORD 32003
17-03-17 22:05:57.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:05:57.408 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -8.7 V.
17-03-17 22:05:57.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35934 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:05:57.408 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 4, negNoise = 7
17-03-17 22:05:57.408 -07 000000610 INF: Z Motor: After move to -0.171160, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:05:57.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:05:57.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:05:57.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:05:57.408 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:05:57.408 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:05:57.408 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:05:57.408 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:05:57.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:05:57.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:05:57.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:05:57.408 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:05:57.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:05:57.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:05:57.418 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:05:57.418 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:05:57.418 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:05:57.418 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:05:57.428 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:05:57.428 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:05:57.428 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:05:57.428 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:05:57.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37567 150\n [Camera]
17-03-17 22:05:57.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:05:58.068 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:05:58.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:05:58.078 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:58.078 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:58.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:05:58.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:05:58.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:05:58.078 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:58.078 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:58.078 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:05:58.458 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:05:58.458 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:05:58.458 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:58.458 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:58.458 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:05:58.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:05:58.458 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:05:58.458 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:58.468 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:05:58.468 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:05:58.478 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37567 830
17-03-17 22:05:58.478 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:05:58.628 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:05:58.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:05:58.628 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:05:58.628 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:05:58.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:05:58.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:05:58.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:05:58.628 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:05:58.638 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:05:58.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:05:58.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:05:58.818 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:05:58.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37567 150' command took 2 ms to send, 1388 ms to get response, and 1393 ms overall
17-03-17 22:05:58.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:05:58.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171177415325315. ------
17-03-17 22:05:58.828 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:05:58.828 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17775 mm
17-03-17 22:05:58.828 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:05:58.828 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:05:58.828 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:05:58.828 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:05:58.828 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38829, sync = True, waitForSettling = False)
17-03-17 22:05:58.828 -07 000000462 INF: Z Motor: Moving to -0.177748 mm, started at -0.171177 mm, distance = -6.57 um
17-03-17 22:05:58.838 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:05:58.838 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:58.838 -07 000000448 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:05:58.848 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:05:58.848 -07 000000623 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:58.848 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:05:58.848 -07 000000623 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:05:58.858 -07 000000462 INF: FPGA: Xmit ZDACW 38829\n [Z Motor]
17-03-17 22:05:58.858 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:05:58.868 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:05:58.868 -07 000000462 INF: FPGA: 'ZDACW 38829' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 22:05:58.878 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:05:58.888 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:05:58.888 -07 000000561 INF: FPGA: Recv ZDACR 38829
17-03-17 22:05:58.898 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:05:58.898 -07 000000462 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 22:05:59.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:05:59.018 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:05:59.018 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:59.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:05:59.018 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:05:59.018 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:05:59.028 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:05:59.028 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:05:59.028 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:05:59.028 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:05:59.068 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:05:59.068 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 22:05:59.248 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:05:59.248 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 22:05:59.288 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:05:59.288 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:05:59.298 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:05:59.298 -07 000000623 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:05:59.298 -07 000000623 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:05:59.298 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.837 mm, average velocity = 2.057 mm/sec
17-03-17 22:06:00.248 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:00.248 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:06:00.258 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.258 -07 000000623 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:00.278 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:00.278 -07 000000623 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:00.278 -07 000000623 INF: Y Motor: Moved to 63.2241 after 1444 ms (table move)
17-03-17 22:06:00.278 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177748 mm (DAC = 38829)
17-03-17 22:06:00.278 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36969
17-03-17 22:06:00.288 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:06:00.288 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36960
17-03-17 22:06:00.298 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:00.298 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.298 -07 000000438 INF: FPGA: Recv ZSGSRD 36950
17-03-17 22:06:00.308 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.308 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.308 -07 000000480 INF: FPGA: Recv ZSGSRD 36959
17-03-17 22:06:00.318 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.318 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36962
17-03-17 22:06:00.328 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.328 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.328 -07 000000480 INF: FPGA: Recv ZSGSRD 36964
17-03-17 22:06:00.338 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.338 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36964
17-03-17 22:06:00.348 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.348 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.348 -07 000000480 INF: FPGA: Recv ZSGSRD 36954
17-03-17 22:06:00.358 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.358 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.358 -07 000000438 INF: FPGA: Recv ZSGSRD 36958
17-03-17 22:06:00.368 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.368 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:00.368 -07 000000480 INF: FPGA: Recv ZSGSRD 36957
17-03-17 22:06:00.378 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.378 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:00.378 -07 000000561 INF: FPGA: Recv ZPIEZORD 33342
17-03-17 22:06:00.388 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:00.388 -07 000000476 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.925 V. Piezo Error = -8.0 V.
17-03-17 22:06:00.388 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36960 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36960 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36950 (-176.8 uncal um), Max = 36969 (-176.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:06:00.388 -07 000000476 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36960, posNoise = 9, negNoise = 10
17-03-17 22:06:00.388 -07 000000476 INF: Z Motor: After move to -0.177748, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:00.388 -07 000000476 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:06:00.388 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:00.438 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:06:00.438 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:00.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:00.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:00.438 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:00.438 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:00.438 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:00.438 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:00.438 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:06:00.438 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:00.448 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:00.448 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:00.448 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:06:00.448 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:06:00.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:00.508 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:00.698 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:00.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:00.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:00.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) start.
17-03-17 22:06:00.738 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:00.748 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:00.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 22:06:00.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1410451104, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:06:00.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:00.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:00.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:06:00.848 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:01.818 -07 000000551 INF: Autofocus start
17-03-17 22:06:01.818 -07 000000551 INF: MeasureProfile start
17-03-17 22:06:01.828 -07 000000551 INF: MeasureProfile done
17-03-17 22:06:01.828 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:06:01.828 -07 000000551 INF: Autofocus finished
17-03-17 22:06:01.828 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:01.828 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 977 ms to get response, and 980 ms overall
17-03-17 22:06:01.828 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:01.938 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:01.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:02.038 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:02.038 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 22:06:02.038 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.17776223277062. ----------
17-03-17 22:06:02.038 -07 000000610 INF: Cycle	59	Tile	5	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:02.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37344, sync = True, waitForSettling = True)
17-03-17 22:06:02.048 -07 000000610 INF: Z Motor: Moving to -0.170950 mm, started at -0.177762 mm, distance = 6.81 um
17-03-17 22:06:02.048 -07 000000610 INF: FPGA: Xmit ZDACW 37344\n [Z Motor]
17-03-17 22:06:02.048 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:06:02.058 -07 000000610 INF: FPGA: 'ZDACW 37344' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:02.058 -07 000000551 INF: FPGA: Recv ZDACR 37344
17-03-17 22:06:02.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:02.138 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.003063,
17-03-17 22:06:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.218 -07 000000551 INF: FPGA: Recv ZSGSRD 35902
17-03-17 22:06:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.228 -07 000000547 INF: FPGA: Recv ZSGSRD 35897
17-03-17 22:06:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.238 -07 000000382 INF: FPGA: Recv ZSGSRD 35900
17-03-17 22:06:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.248 -07 000000382 INF: FPGA: Recv ZSGSRD 35900
17-03-17 22:06:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35897
17-03-17 22:06:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:06:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:06:02.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.288 -07 000000424 INF: FPGA: Recv ZSGSRD 35901
17-03-17 22:06:02.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35900
17-03-17 22:06:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:02.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35905
17-03-17 22:06:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:02.318 -07 000000433 INF: FPGA: Recv ZPIEZORD 31952
17-03-17 22:06:02.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:02.328 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.7 V.
17-03-17 22:06:02.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35900 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35900 (-170.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35897 (-170.1 uncal um), Max = 35905 (-170.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:06:02.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35900, posNoise = 5, negNoise = 3
17-03-17 22:06:02.328 -07 000000610 INF: Z Motor: After move to -0.170950, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:02.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:06:02.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:02.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:02.328 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:02.328 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:02.328 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:02.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:02.328 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:02.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:02.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:06:02.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:02.328 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:02.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:02.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:02.328 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:02.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:02.338 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:02.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 22:06:02.348 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:06:02.348 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 22:06:02.348 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:06:02.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37520 150\n [Camera]
17-03-17 22:06:02.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:02.998 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:02.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:03.008 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:03.008 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:03.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:06:03.008 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:03.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:03.008 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:03.008 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:03.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:06:03.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37520 830
17-03-17 22:06:03.348 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:03.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:06:03.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:06:03.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:03.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:06:03.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:06:03.398 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:03.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:03.408 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:03.408 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:06:03.408 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:06:03.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:03.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:03.558 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:03.558 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:03.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:06:03.568 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:03.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:03.568 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:03.568 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:03.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:06:03.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:06:03.748 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:03.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37520 150' command took 2 ms to send, 1387 ms to get response, and 1397 ms overall
17-03-17 22:06:03.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:03.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170952567900353. ------
17-03-17 22:06:03.878 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17734 mm
17-03-17 22:06:03.878 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:03.878 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:03.878 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:06:03.878 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:06:03.878 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-17 22:06:03.878 -07 000000475 INF: Z Motor: Moving to -0.177336 mm, started at -0.170953 mm, distance = -6.38 um
17-03-17 22:06:03.878 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:03.888 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:03.888 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:03.898 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:03.898 -07 000000448 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:06:03.908 -07 000000475 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-17 22:06:03.908 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:06:03.908 -07 000000462 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:03.908 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:06:03.908 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:03.908 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:06:03.918 -07 000000475 INF: FPGA: 'ZDACW 38739' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-17 22:06:03.918 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:03.928 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:03.928 -07 000000476 INF: FPGA: Recv ZDACR 38739
17-03-17 22:06:03.938 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:03.938 -07 000000475 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 22:06:03.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 22:06:03.968 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:06:03.968 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:03.968 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:06:03.968 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:06:03.968 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:03.968 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:03.978 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:06:03.978 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:06:03.978 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:06:04.088 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:04.088 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:04.288 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:06:04.288 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:06:04.328 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:04.328 -07 000000512 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:06:04.338 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:04.338 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:04.338 -07 000000462 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:06:04.338 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.184 mm/sec
17-03-17 22:06:05.288 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:06.068 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:06:06.068 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 770 ms to get response, and 780 ms overall
17-03-17 22:06:06.068 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:06.108 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:06.108 -07 000000462 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:06.108 -07 000000462 INF: Y Motor: Moved to 64.0571 after 2228 ms (table move)
17-03-17 22:06:06.108 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-17 22:06:06.108 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.108 -07 000000551 INF: FPGA: Recv ZSGSRD 36904
17-03-17 22:06:06.118 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:06.118 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.118 -07 000000551 INF: FPGA: Recv ZSGSRD 36899
17-03-17 22:06:06.128 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.128 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.128 -07 000000462 INF: FPGA: Recv ZSGSRD 36890
17-03-17 22:06:06.138 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.138 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.138 -07 000000551 INF: FPGA: Recv ZSGSRD 36894
17-03-17 22:06:06.148 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.148 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36900
17-03-17 22:06:06.158 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.158 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.158 -07 000000561 INF: FPGA: Recv ZSGSRD 36896
17-03-17 22:06:06.168 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.168 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36892
17-03-17 22:06:06.178 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.178 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.178 -07 000000382 INF: FPGA: Recv ZSGSRD 36899
17-03-17 22:06:06.188 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.188 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.188 -07 000000462 INF: FPGA: Recv ZSGSRD 36896
17-03-17 22:06:06.198 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:06.198 -07 000000561 INF: FPGA: Recv ZSGSRD 36899
17-03-17 22:06:06.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.208 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:06.208 -07 000000561 INF: FPGA: Recv ZPIEZORD 33299
17-03-17 22:06:06.218 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:06.218 -07 000000433 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.0 V.
17-03-17 22:06:06.218 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36897 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36898 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36890 (-176.4 uncal um), Max = 36904 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:06.218 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36897, posNoise = 7, negNoise = 7
17-03-17 22:06:06.218 -07 000000433 INF: Z Motor: After move to -0.177336, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:06.218 -07 000000433 INF: Z Motor: Settle wait time = 2231 ms, measure time = 104 ms (allowed 150 ms), total time = 2335 ms
17-03-17 22:06:06.218 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:06.268 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2388 ms
17-03-17 22:06:06.268 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:06.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:06.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:06.268 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:06.268 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:06.268 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:06.268 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:06.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:06.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:06.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:06.278 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:06.288 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:06:06.288 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:06:06.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:06.328 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:06.528 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:06.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:06.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:06.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 22:06:06.568 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:06.568 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:06.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:06:06.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:06:06.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:06.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:06.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:06:06.768 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:06.768 -07 000000424 INF: Autofocus start
17-03-17 22:06:06.768 -07 000000424 INF: MeasureProfile start
17-03-17 22:06:06.768 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:06.778 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:06.778 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:06.778 -07 000000424 INF: MeasureProfile done
17-03-17 22:06:06.778 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-17 22:06:06.778 -07 000000424 INF: Autofocus finished
17-03-17 22:06:06.938 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:06.978 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:06.978 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:06:06.988 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177357507405689. ----------
17-03-17 22:06:06.988 -07 000000610 INF: Cycle	59	Tile	6	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:06.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37254, sync = True, waitForSettling = True)
17-03-17 22:06:06.988 -07 000000610 INF: Z Motor: Moving to -0.170538 mm, started at -0.177358 mm, distance = 6.82 um
17-03-17 22:06:06.988 -07 000000610 INF: FPGA: Xmit ZDACW 37254\n [Z Motor]
17-03-17 22:06:06.988 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:06:06.998 -07 000000610 INF: FPGA: 'ZDACW 37254' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:06:06.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:06.998 -07 000000462 INF: FPGA: Recv ZDACR 37254
17-03-17 22:06:07.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:07.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.158 -07 000000448 INF: FPGA: Recv ZSGSRD 35839
17-03-17 22:06:07.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:07.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.168 -07 000000448 INF: FPGA: Recv ZSGSRD 35836
17-03-17 22:06:07.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.188 -07 000000462 INF: FPGA: Recv ZSGSRD 35839
17-03-17 22:06:07.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:07.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.198 -07 000000475 INF: FPGA: Recv ZSGSRD 35838
17-03-17 22:06:07.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.208 -07 000000475 INF: FPGA: Recv ZSGSRD 35833
17-03-17 22:06:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.218 -07 000000475 INF: FPGA: Recv ZSGSRD 35840
17-03-17 22:06:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35839
17-03-17 22:06:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35836
17-03-17 22:06:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.248 -07 000000475 INF: FPGA: Recv ZSGSRD 35836
17-03-17 22:06:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:07.258 -07 000000462 INF: FPGA: Recv ZSGSRD 35837
17-03-17 22:06:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:07.268 -07 000000475 INF: FPGA: Recv ZPIEZORD 31867
17-03-17 22:06:07.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:07.278 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -8.8 V.
17-03-17 22:06:07.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35837 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35833 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:06:07.278 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35837, posNoise = 3, negNoise = 4
17-03-17 22:06:07.278 -07 000000610 INF: Z Motor: After move to -0.170538, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:07.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 22:06:07.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:07.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:07.278 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:07.278 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:07.278 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:07.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:07.278 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:07.278 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:07.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:07.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:07.278 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:07.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:07.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:07.288 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:07.288 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:06:07.288 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:07.298 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:06:07.298 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:06:07.298 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:06:07.298 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:06:07.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37431 150\n [Camera]
17-03-17 22:06:07.498 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.983999,
17-03-17 22:06:07.498 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:07.948 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:07.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:07.948 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:07.948 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:07.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:07.948 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:07.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:07.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:06:07.958 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:07.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:06:08.138 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37431 830
17-03-17 22:06:08.288 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:08.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:06:08.348 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:06:08.348 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:08.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:06:08.358 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:06:08.358 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:08.358 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:08.358 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:06:08.358 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:08.368 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:06:08.508 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:08.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:08.508 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:08.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:08.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:08.508 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:08.628 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:08.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:06:08.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:08.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:06:08.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:06:08.698 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:08.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37431 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-17 22:06:08.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:08.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170547842535422. ------
17-03-17 22:06:08.698 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:08.698 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17684 mm
17-03-17 22:06:08.698 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:08.708 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:06:08.708 -07 000000433 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:06:08.708 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:08.708 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38631, sync = True, waitForSettling = False)
17-03-17 22:06:08.708 -07 000000462 INF: Z Motor: Moving to -0.176841 mm, started at -0.170548 mm, distance = -6.29 um
17-03-17 22:06:08.708 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:08.708 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:06:08.708 -07 000000475 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:06:08.718 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:08.718 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:08.718 -07 000000433 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:08.718 -07 000000433 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:06:08.718 -07 000000462 INF: FPGA: Xmit ZDACW 38631\n [Z Motor]
17-03-17 22:06:08.718 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:06:08.728 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:08.728 -07 000000462 INF: FPGA: 'ZDACW 38631' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:06:08.738 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:08.748 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:08.748 -07 000000512 INF: FPGA: Recv ZDACR 38631
17-03-17 22:06:08.758 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:08.758 -07 000000462 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:06:08.928 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:08.928 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 22:06:09.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:06:09.028 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:06:09.028 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:09.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:06:09.028 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:06:09.028 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:09.038 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:09.038 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:09.038 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 22:06:09.038 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-17 22:06:09.108 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:06:09.108 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 22:06:09.148 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:09.148 -07 000000448 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:06:09.158 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:09.158 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:09.158 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:06:09.158 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 22:06:10.108 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:10.108 -07 000000424 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:06:10.118 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:10.118 -07 000000433 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:10.138 -07 000000433 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:10.138 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:10.138 -07 000000433 INF: Y Motor: Moved to 64.8794 after 1435 ms (table move)
17-03-17 22:06:10.148 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176841 mm (DAC = 38631)
17-03-17 22:06:10.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.148 -07 000000623 INF: FPGA: Recv ZSGSRD 36814
17-03-17 22:06:10.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.158 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36813
17-03-17 22:06:10.168 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36821
17-03-17 22:06:10.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.178 -07 000000475 INF: FPGA: Recv ZSGSRD 36814
17-03-17 22:06:10.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.188 -07 000000475 INF: FPGA: Recv ZSGSRD 36824
17-03-17 22:06:10.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.198 -07 000000475 INF: FPGA: Recv ZSGSRD 36826
17-03-17 22:06:10.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.208 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.208 -07 000000475 INF: FPGA: Recv ZSGSRD 36815
17-03-17 22:06:10.218 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.218 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.218 -07 000000475 INF: FPGA: Recv ZSGSRD 36812
17-03-17 22:06:10.228 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36814
17-03-17 22:06:10.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:10.238 -07 000000475 INF: FPGA: Recv ZSGSRD 36814
17-03-17 22:06:10.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.248 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:10.248 -07 000000475 INF: FPGA: Recv ZPIEZORD 33223
17-03-17 22:06:10.258 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.258 -07 000000551 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.895 V. Piezo Error = -8.0 V.
17-03-17 22:06:10.258 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36817 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36814 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36812 (-175.9 uncal um), Max = 36826 (-176.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:06:10.258 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36817, posNoise = 9, negNoise = 5
17-03-17 22:06:10.258 -07 000000551 INF: Z Motor: After move to -0.176841, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:10.258 -07 000000551 INF: Z Motor: Settle wait time = 1438 ms, measure time = 111 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:06:10.258 -07 000000551 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:10.298 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 22:06:10.298 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:10.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:10.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:10.298 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:10.298 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:10.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:10.298 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:10.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:10.298 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:10.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:10.308 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:10.308 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:06:10.308 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:06:10.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:10.358 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:10.558 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:10.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:10.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:10.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 22:06:10.598 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:10.598 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:10.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:06:10.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:06:10.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:10.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:10.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:06:10.698 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:10.698 -07 000000424 INF: Autofocus start
17-03-17 22:06:10.698 -07 000000424 INF: MeasureProfile start
17-03-17 22:06:10.698 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:10.708 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:10.708 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:10.708 -07 000000424 INF: MeasureProfile done
17-03-17 22:06:10.708 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-17 22:06:10.708 -07 000000424 INF: Autofocus finished
17-03-17 22:06:10.908 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:10.908 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:10.908 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176843570434348. ----------
17-03-17 22:06:10.908 -07 000000610 INF: Cycle	59	Tile	7	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:10.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37181, sync = True, waitForSettling = True)
17-03-17 22:06:10.918 -07 000000610 INF: Z Motor: Moving to -0.170204 mm, started at -0.176844 mm, distance = 6.64 um
17-03-17 22:06:10.918 -07 000000610 INF: FPGA: Xmit ZDACW 37181\n [Z Motor]
17-03-17 22:06:10.918 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:06:10.928 -07 000000610 INF: FPGA: 'ZDACW 37181' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:10.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:10.928 -07 000000433 INF: FPGA: Recv ZDACR 37181
17-03-17 22:06:10.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:10.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.088 -07 000000623 INF: FPGA: Recv ZSGSRD 35781
17-03-17 22:06:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.098 -07 000000433 INF: FPGA: Recv ZSGSRD 35783
17-03-17 22:06:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.108 -07 000000551 INF: FPGA: Recv ZSGSRD 35785
17-03-17 22:06:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:11.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.118 -07 000000382 INF: FPGA: Recv ZSGSRD 35790
17-03-17 22:06:11.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.128 -07 000000512 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:06:11.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35782
17-03-17 22:06:11.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.148 -07 000000382 INF: FPGA: Recv ZSGSRD 35785
17-03-17 22:06:11.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.158 -07 000000424 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:06:11.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.168 -07 000000462 INF: FPGA: Recv ZSGSRD 35786
17-03-17 22:06:11.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:11.178 -07 000000512 INF: FPGA: Recv ZSGSRD 35781
17-03-17 22:06:11.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:11.188 -07 000000424 INF: FPGA: Recv ZPIEZORD 31834
17-03-17 22:06:11.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:11.198 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -8.7 V.
17-03-17 22:06:11.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35784 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35785 (-169.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35781 (-169.3 uncal um), Max = 35790 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:06:11.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35784, posNoise = 6, negNoise = 3
17-03-17 22:06:11.198 -07 000000610 INF: Z Motor: After move to -0.170204, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:11.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:06:11.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:11.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:11.198 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:11.198 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:11.198 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:11.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:11.198 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:11.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:11.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:11.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:11.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:11.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:11.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:11.208 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:11.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:11.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:11.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:06:11.208 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:06:11.218 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:06:11.218 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:06:11.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37358 150\n [Camera]
17-03-17 22:06:11.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:11.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:11.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:11.868 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:11.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:11.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:11.868 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:11.868 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:11.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:06:11.868 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:11.868 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:06:11.938 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:11.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:12.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37358 830
17-03-17 22:06:12.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:12.268 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:06:12.268 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:06:12.268 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:12.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:06:12.268 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:06:12.268 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:12.268 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:12.268 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:06:12.268 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:12.278 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:06:12.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:12.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:12.418 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:12.418 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:12.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:06:12.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:12.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:12.418 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:12.418 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:12.418 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1462748432, 0x0, 418435064) start.
17-03-17 22:06:12.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:06:12.608 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:12.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37358 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-17 22:06:12.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:12.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.170207359291909. ------
17-03-17 22:06:12.618 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:12.618 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17664 mm
17-03-17 22:06:12.618 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:12.618 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:06:12.618 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38588, sync = True, waitForSettling = False)
17-03-17 22:06:12.618 -07 000000382 INF: Z Motor: Moving to -0.176645 mm, started at -0.170207 mm, distance = -6.44 um
17-03-17 22:06:12.618 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:12.618 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 22:06:12.628 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:12.628 -07 000000382 INF: FPGA: Xmit ZDACW 38588\n [Z Motor]
17-03-17 22:06:12.628 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:06:12.638 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:12.638 -07 000000382 INF: FPGA: 'ZDACW 38588' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:06:12.638 -07 000000475 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:06:12.648 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:12.648 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:06:12.648 -07 000000448 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:12.648 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:12.648 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:06:12.658 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:12.658 -07 000000551 INF: FPGA: Recv ZDACR 38588
17-03-17 22:06:12.668 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:12.668 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:06:12.668 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:12.818 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1462748432, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:06:12.818 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:06:12.818 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:12.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:06:12.818 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:06:12.818 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:12.818 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:12.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:06:12.828 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:06:12.828 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:06:12.848 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:12.848 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 22:06:12.858 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.999021,
17-03-17 22:06:13.038 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:06:13.038 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:06:13.078 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:13.088 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-17 22:06:13.088 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:06:13.088 -07 000000448 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:13.088 -07 000000448 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:06:13.088 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 22:06:14.038 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:14.038 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:06:14.048 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:14.048 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:14.068 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:14.068 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:14.068 -07 000000448 INF: Y Motor: Moved to 65.7144 after 1450 ms (table move)
17-03-17 22:06:14.078 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176645 mm (DAC = 38588)
17-03-17 22:06:14.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.078 -07 000000382 INF: FPGA: Recv ZSGSRD 36785
17-03-17 22:06:14.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.088 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.088 -07 000000424 INF: FPGA: Recv ZSGSRD 36793
17-03-17 22:06:14.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.098 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36789
17-03-17 22:06:14.108 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.108 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.108 -07 000000448 INF: FPGA: Recv ZSGSRD 36790
17-03-17 22:06:14.118 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.118 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.118 -07 000000475 INF: FPGA: Recv ZSGSRD 36790
17-03-17 22:06:14.128 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.128 -07 000000424 INF: FPGA: Recv ZSGSRD 36785
17-03-17 22:06:14.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36781
17-03-17 22:06:14.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.148 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.148 -07 000000561 INF: FPGA: Recv ZSGSRD 36787
17-03-17 22:06:14.158 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:14.158 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36787
17-03-17 22:06:14.168 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:14.168 -07 000000561 INF: FPGA: Recv ZSGSRD 36789
17-03-17 22:06:14.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.178 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:14.178 -07 000000424 INF: FPGA: Recv ZPIEZORD 33195
17-03-17 22:06:14.188 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.188 -07 000000547 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.0 V.
17-03-17 22:06:14.188 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36788 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36788 (-175.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36781 (-175.7 uncal um), Max = 36793 (-175.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:14.188 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36788, posNoise = 5, negNoise = 7
17-03-17 22:06:14.188 -07 000000547 INF: Z Motor: After move to -0.176645, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:14.188 -07 000000547 INF: Z Motor: Settle wait time = 1453 ms, measure time = 111 ms (allowed 150 ms), total time = 1564 ms
17-03-17 22:06:14.188 -07 000000547 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:14.228 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:06:14.228 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:14.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:14.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:14.228 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:14.228 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:14.228 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:14.228 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:14.228 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:06:14.228 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:14.238 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:14.238 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:14.248 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:06:14.248 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:06:14.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:14.298 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:14.498 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:14.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:14.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:14.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1498170696, 0x0, 559484976) start.
17-03-17 22:06:14.528 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:14.538 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:14.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:06:14.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1498170696, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:06:14.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:14.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:14.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:06:14.638 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:14.638 -07 000000448 INF: Autofocus start
17-03-17 22:06:14.638 -07 000000448 INF: MeasureProfile start
17-03-17 22:06:14.638 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:14.648 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:14.648 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:14.658 -07 000000448 INF: MeasureProfile done
17-03-17 22:06:14.658 -07 000000448 INF: X=64  Z correction [um]=0.2557664
17-03-17 22:06:14.658 -07 000000448 INF: Autofocus finished
17-03-17 22:06:14.848 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:14.848 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:06:14.848 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176657268282237. ----------
17-03-17 22:06:14.858 -07 000000610 INF: Cycle	59	Tile	8	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:14.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37156, sync = True, waitForSettling = True)
17-03-17 22:06:14.858 -07 000000610 INF: Z Motor: Moving to -0.170089 mm, started at -0.176657 mm, distance = 6.57 um
17-03-17 22:06:14.858 -07 000000610 INF: FPGA: Xmit ZDACW 37156\n [Z Motor]
17-03-17 22:06:14.858 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:06:14.868 -07 000000610 INF: FPGA: 'ZDACW 37156' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:14.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:14.868 -07 000000448 INF: FPGA: Recv ZDACR 37156
17-03-17 22:06:14.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:14.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.028 -07 000000551 INF: FPGA: Recv ZSGSRD 35770
17-03-17 22:06:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.038 -07 000000424 INF: FPGA: Recv ZSGSRD 35769
17-03-17 22:06:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.048 -07 000000512 INF: FPGA: Recv ZSGSRD 35765
17-03-17 22:06:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.058 -07 000000424 INF: FPGA: Recv ZSGSRD 35767
17-03-17 22:06:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.068 -07 000000424 INF: FPGA: Recv ZSGSRD 35769
17-03-17 22:06:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.078 -07 000000551 INF: FPGA: Recv ZSGSRD 35768
17-03-17 22:06:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.088 -07 000000424 INF: FPGA: Recv ZSGSRD 35767
17-03-17 22:06:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.098 -07 000000424 INF: FPGA: Recv ZSGSRD 35770
17-03-17 22:06:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.108 -07 000000480 INF: FPGA: Recv ZSGSRD 35767
17-03-17 22:06:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:15.118 -07 000000424 INF: FPGA: Recv ZSGSRD 35770
17-03-17 22:06:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:15.128 -07 000000424 INF: FPGA: Recv ZPIEZORD 31828
17-03-17 22:06:15.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:15.138 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.7 V.
17-03-17 22:06:15.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35768 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35768 (-169.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35765 (-169.2 uncal um), Max = 35770 (-169.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:06:15.138 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35768, posNoise = 2, negNoise = 3
17-03-17 22:06:15.138 -07 000000610 INF: Z Motor: After move to -0.170089, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:15.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:06:15.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:15.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:15.138 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:15.138 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:15.138 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:15.138 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:15.138 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:15.138 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:15.138 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:06:15.138 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:15.138 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:06:15.138 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:15.148 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:15.148 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:15.148 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:15.148 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:15.158 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:06:15.158 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:15.158 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:06:15.158 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:15.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37333 150\n [Camera]
17-03-17 22:06:15.358 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:15.808 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:15.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:15.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:15.808 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:15.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:06:15.808 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:15.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:15.808 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:15.808 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:15.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:06:15.998 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37333 830
17-03-17 22:06:16.148 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:16.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:06:16.188 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:06:16.188 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:16.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:06:16.188 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:06:16.188 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:16.188 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:16.188 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:06:16.198 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:16.198 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:06:16.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:16.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:16.368 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:16.478 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:16.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:16.488 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:16.488 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:16.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:06:16.488 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:16.488 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:06:16.558 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:06:16.558 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:16.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37333 150' command took 2 ms to send, 1391 ms to get response, and 1397 ms overall
17-03-17 22:06:16.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:16.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.170104571897641. ------
17-03-17 22:06:16.558 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:16.558 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17641 mm
17-03-17 22:06:16.558 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:16.568 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:06:16.568 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:06:16.568 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:16.568 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-17 22:06:16.568 -07 000000551 INF: Z Motor: Moving to -0.176411 mm, started at -0.170105 mm, distance = -6.31 um
17-03-17 22:06:16.568 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:16.568 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 22:06:16.568 -07 000000547 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:06:16.578 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:16.578 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:16.578 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:16.578 -07 000000438 INF: Y Motor: Moving 1341 steps-18
17-03-17 22:06:16.578 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:16.588 -07 000000551 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-17 22:06:16.588 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:06:16.598 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:16.598 -07 000000551 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:06:16.608 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:16.608 -07 000000382 INF: FPGA: Recv ZDACR 38537
17-03-17 22:06:16.618 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:16.618 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:06:16.778 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:16.778 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 197 ms to get response, and 214 ms overall
17-03-17 22:06:16.868 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:06:16.868 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:06:16.868 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:16.868 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:16.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:06:16.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:06:16.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:16.878 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:16.878 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 22:06:16.878 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:06:16.938 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:16.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:16.968 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:06:16.968 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:06:17.008 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:17.018 -07 000000424 INF: FPGA: Recv YRDPOS 136272
17-03-17 22:06:17.018 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:06:17.018 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:17.018 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:06:17.018 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-17 22:06:17.968 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:17.968 -07 000000551 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:06:17.978 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:17.978 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:17.998 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:17.998 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:17.998 -07 000000438 INF: Y Motor: Moved to 66.5396 after 1434 ms (table move)
17-03-17 22:06:17.998 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-17 22:06:17.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.008 -07 000000438 INF: FPGA: Recv ZSGSRD 36759
17-03-17 22:06:18.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:06:18.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.008 -07 000000561 INF: FPGA: Recv ZSGSRD 36748
17-03-17 22:06:18.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:18.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.018 -07 000000448 INF: FPGA: Recv ZSGSRD 36753
17-03-17 22:06:18.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.028 -07 000000448 INF: FPGA: Recv ZSGSRD 36754
17-03-17 22:06:18.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.038 -07 000000476 INF: FPGA: Recv ZSGSRD 36757
17-03-17 22:06:18.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:18.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.048 -07 000000438 INF: FPGA: Recv ZSGSRD 36750
17-03-17 22:06:18.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.058 -07 000000576 INF: FPGA: Recv ZSGSRD 36748
17-03-17 22:06:18.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.068 -07 000000551 INF: FPGA: Recv ZSGSRD 36749
17-03-17 22:06:18.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.078 -07 000000551 INF: FPGA: Recv ZSGSRD 36745
17-03-17 22:06:18.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.088 -07 000000551 INF: FPGA: Recv ZSGSRD 36747
17-03-17 22:06:18.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.098 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:18.098 -07 000000551 INF: FPGA: Recv ZPIEZORD 33116
17-03-17 22:06:18.108 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.108 -07 000000475 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.1 V.
17-03-17 22:06:18.108 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36751 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36750 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36745 (-175.5 uncal um), Max = 36759 (-175.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:06:18.108 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36751, posNoise = 8, negNoise = 6
17-03-17 22:06:18.108 -07 000000475 INF: Z Motor: After move to -0.176411, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:18.108 -07 000000475 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:06:18.108 -07 000000475 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:18.158 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:06:18.158 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:18.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:18.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:18.158 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:18.158 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:18.158 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:18.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:18.158 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:06:18.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:18.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:18.168 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:18.178 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:06:18.178 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:06:18.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:18.218 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.989471,
17-03-17 22:06:18.228 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:18.428 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:18.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:18.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:18.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600604488, 0x0, 559484976) start.
17-03-17 22:06:18.468 -07 000000438 INF: FPGA: Recv @CAMSNAP 281
17-03-17 22:06:18.468 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:18.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 285 ms overall
17-03-17 22:06:18.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600604488, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:06:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:18.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:06:18.568 -07 000000438 INF: Autofocus start
17-03-17 22:06:18.568 -07 000000438 INF: MeasureProfile start
17-03-17 22:06:18.568 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:18.568 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:18.578 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:18.578 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:18.578 -07 000000438 INF: MeasureProfile done
17-03-17 22:06:18.578 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:06:18.578 -07 000000438 INF: Autofocus finished
17-03-17 22:06:18.778 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:18.778 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:18.778 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.176419572432992. ----------
17-03-17 22:06:18.778 -07 000000610 INF: Cycle	59	Tile	9	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:18.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37034, sync = True, waitForSettling = True)
17-03-17 22:06:18.788 -07 000000610 INF: Z Motor: Moving to -0.169531 mm, started at -0.176420 mm, distance = 6.89 um
17-03-17 22:06:18.788 -07 000000610 INF: FPGA: Xmit ZDACW 37034\n [Z Motor]
17-03-17 22:06:18.788 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:06:18.798 -07 000000610 INF: FPGA: 'ZDACW 37034' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:18.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:18.798 -07 000000512 INF: FPGA: Recv ZDACR 37034
17-03-17 22:06:18.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:18.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35686
17-03-17 22:06:18.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:18.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.968 -07 000000561 INF: FPGA: Recv ZSGSRD 35676
17-03-17 22:06:18.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.978 -07 000000512 INF: FPGA: Recv ZSGSRD 35682
17-03-17 22:06:18.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.988 -07 000000576 INF: FPGA: Recv ZSGSRD 35679
17-03-17 22:06:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:18.998 -07 000000512 INF: FPGA: Recv ZSGSRD 35683
17-03-17 22:06:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:19.008 -07 000000561 INF: FPGA: Recv ZSGSRD 35679
17-03-17 22:06:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:19.018 -07 000000512 INF: FPGA: Recv ZSGSRD 35672
17-03-17 22:06:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:19.028 -07 000000547 INF: FPGA: Recv ZSGSRD 35689
17-03-17 22:06:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:19.038 -07 000000438 INF: FPGA: Recv ZSGSRD 35680
17-03-17 22:06:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:19.048 -07 000000576 INF: FPGA: Recv ZSGSRD 35680
17-03-17 22:06:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:19.058 -07 000000480 INF: FPGA: Recv ZPIEZORD 31681
17-03-17 22:06:19.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:19.068 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.8 V.
17-03-17 22:06:19.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35681 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35689 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:06:19.068 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35681, posNoise = 8, negNoise = 9
17-03-17 22:06:19.068 -07 000000610 INF: Z Motor: After move to -0.169531, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:19.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:06:19.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:19.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:19.068 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:19.068 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:19.068 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:19.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:19.068 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:19.068 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:19.068 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:19.068 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:19.068 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:19.068 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:19.078 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:19.078 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:19.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:19.078 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:19.088 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:06:19.088 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:19.088 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:06:19.088 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:06:19.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37211 150\n [Camera]
17-03-17 22:06:19.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:19.728 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:19.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:19.738 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:19.738 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:19.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:19.738 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:19.738 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:19.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:06:19.738 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:19.738 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 22:06:19.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37211 830
17-03-17 22:06:20.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:20.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 22:06:20.108 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 22:06:20.108 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:20.118 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 22:06:20.118 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 22:06:20.118 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:20.118 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:20.118 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:06:20.118 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:20.128 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:06:20.408 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1195
17-03-17 22:06:20.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1195
17-03-17 22:06:20.408 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1195
17-03-17 22:06:20.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1195
17-03-17 22:06:20.408 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:20.408 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:20.418 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:20.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:06:20.418 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:20.418 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:06:20.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1389
17-03-17 22:06:20.488 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:20.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37211 150' command took 2 ms to send, 1390 ms to get response, and 1396 ms overall
17-03-17 22:06:20.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:20.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.169545665441308. ------
17-03-17 22:06:20.488 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:20.488 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17626 mm
17-03-17 22:06:20.488 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:20.498 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:20.498 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:20.498 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:20.498 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:06:20.498 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:06:20.498 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38503, sync = True, waitForSettling = False)
17-03-17 22:06:20.498 -07 000000475 INF: Z Motor: Moving to -0.176255 mm, started at -0.169546 mm, distance = -6.71 um
17-03-17 22:06:20.508 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:20.508 -07 000000438 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:06:20.518 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:06:20.518 -07 000000475 INF: FPGA: Xmit ZDACW 38503\n [Z Motor]
17-03-17 22:06:20.518 -07 000000576 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:20.518 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:20.518 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:06:20.518 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 22:06:20.528 -07 000000475 INF: FPGA: 'ZDACW 38503' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:06:20.528 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:20.528 -07 000000480 INF: FPGA: Recv ZDACR 38503
17-03-17 22:06:20.538 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:20.538 -07 000000475 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:06:20.538 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:20.698 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:20.698 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:20.808 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:06:20.808 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:06:20.808 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:20.808 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:20.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:06:20.808 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:06:20.808 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:20.818 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:20.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:06:20.818 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:06:20.908 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 22:06:20.908 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:06:20.948 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:20.958 -07 000000623 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:06:20.958 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:20.958 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:20.958 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:06:20.958 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 22:06:21.908 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:21.908 -07 000000475 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:06:21.918 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:21.918 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:21.938 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:21.938 -07 000000576 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:21.938 -07 000000576 INF: Y Motor: Moved to 67.3721 after 1443 ms (table move)
17-03-17 22:06:21.938 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:21.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:21.938 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176255 mm (DAC = 38503)
17-03-17 22:06:21.938 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.948 -07 000000576 INF: FPGA: Recv ZSGSRD 36736
17-03-17 22:06:21.948 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:06:21.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36724
17-03-17 22:06:21.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:21.958 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.958 -07 000000551 INF: FPGA: Recv ZSGSRD 36725
17-03-17 22:06:21.968 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:21.968 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.968 -07 000000561 INF: FPGA: Recv ZSGSRD 36716
17-03-17 22:06:21.978 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:21.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.978 -07 000000512 INF: FPGA: Recv ZSGSRD 36733
17-03-17 22:06:21.988 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:21.988 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.988 -07 000000512 INF: FPGA: Recv ZSGSRD 36731
17-03-17 22:06:21.998 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:21.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:21.998 -07 000000512 INF: FPGA: Recv ZSGSRD 36722
17-03-17 22:06:22.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.008 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36719
17-03-17 22:06:22.018 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.018 -07 000000623 INF: FPGA: Recv ZSGSRD 36729
17-03-17 22:06:22.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.028 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.028 -07 000000623 INF: FPGA: Recv ZSGSRD 36726
17-03-17 22:06:22.038 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.038 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:22.038 -07 000000623 INF: FPGA: Recv ZPIEZORD 33074
17-03-17 22:06:22.048 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.048 -07 000000462 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.1 V.
17-03-17 22:06:22.048 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36726 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36726 (-175.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36716 (-175.3 uncal um), Max = 36736 (-175.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:06:22.048 -07 000000462 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36726, posNoise = 10, negNoise = 10
17-03-17 22:06:22.048 -07 000000462 INF: Z Motor: After move to -0.176255, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:22.048 -07 000000462 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-17 22:06:22.048 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:22.098 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:06:22.098 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:22.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:22.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:22.098 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:22.098 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:22.098 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:22.098 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:22.098 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:22.098 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:22.108 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:22.108 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:22.118 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:06:22.118 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:06:22.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:22.168 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 22:06:22.368 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 22:06:22.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 22:06:22.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:22.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:06:22.408 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:22.408 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:22.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:06:22.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:06:22.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:22.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:22.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 22:06:22.508 -07 000000475 INF: Autofocus start
17-03-17 22:06:22.508 -07 000000475 INF: MeasureProfile start
17-03-17 22:06:22.508 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:22.508 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:22.518 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:22.518 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:22.518 -07 000000475 INF: MeasureProfile done
17-03-17 22:06:22.518 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:06:22.518 -07 000000475 INF: Autofocus finished
17-03-17 22:06:22.718 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:22.718 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:22.718 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176258967129448. ----------
17-03-17 22:06:22.718 -07 000000610 INF: Cycle	59	Tile	10	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:22.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37036, sync = True, waitForSettling = True)
17-03-17 22:06:22.728 -07 000000610 INF: Z Motor: Moving to -0.169540 mm, started at -0.176259 mm, distance = 6.72 um
17-03-17 22:06:22.728 -07 000000610 INF: FPGA: Xmit ZDACW 37036\n [Z Motor]
17-03-17 22:06:22.728 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:06:22.738 -07 000000610 INF: FPGA: 'ZDACW 37036' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:22.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:22.738 -07 000000424 INF: FPGA: Recv ZDACR 37036
17-03-17 22:06:22.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:22.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.898 -07 000000448 INF: FPGA: Recv ZSGSRD 35681
17-03-17 22:06:22.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:22.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.908 -07 000000462 INF: FPGA: Recv ZSGSRD 35686
17-03-17 22:06:22.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.918 -07 000000561 INF: FPGA: Recv ZSGSRD 35683
17-03-17 22:06:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.928 -07 000000475 INF: FPGA: Recv ZSGSRD 35678
17-03-17 22:06:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35687
17-03-17 22:06:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.948 -07 000000438 INF: FPGA: Recv ZSGSRD 35680
17-03-17 22:06:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35687
17-03-17 22:06:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.968 -07 000000433 INF: FPGA: Recv ZSGSRD 35674
17-03-17 22:06:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.978 -07 000000480 INF: FPGA: Recv ZSGSRD 35682
17-03-17 22:06:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:22.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35688
17-03-17 22:06:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:22.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:22.998 -07 000000512 INF: FPGA: Recv ZPIEZORD 31695
17-03-17 22:06:23.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:23.008 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.8 V.
17-03-17 22:06:23.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35683 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35688 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:06:23.008 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35683, posNoise = 5, negNoise = 9
17-03-17 22:06:23.008 -07 000000610 INF: Z Motor: After move to -0.169540, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:23.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:06:23.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:23.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:23.008 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:23.008 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:23.008 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:23.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:23.008 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:23.008 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:23.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:06:23.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:23.008 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:23.008 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:23.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:06:23.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:23.018 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:06:23.018 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:23.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:06:23.038 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-17 22:06:23.038 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:06:23.038 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 26 ms.
17-03-17 22:06:23.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37213 150\n [Camera]
17-03-17 22:06:23.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:23.578 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.989471,
17-03-17 22:06:23.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:06:23.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:06:23.688 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:23.688 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:23.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:06:23.688 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:06:23.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:06:23.688 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:23.688 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:23.688 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:06:23.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37213 830
17-03-17 22:06:24.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:24.068 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:06:24.068 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:06:24.068 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:24.068 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:06:24.068 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:06:24.068 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:24.078 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:24.078 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:06:24.078 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:24.088 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:06:24.238 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:24.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:24.238 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:24.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:24.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:24.248 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:24.248 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:24.248 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:06:24.248 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:24.248 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:06:24.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:24.428 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:24.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37213 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-17 22:06:24.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:24.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169558513865591. ------
17-03-17 22:06:24.438 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:24.438 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17606 mm
17-03-17 22:06:24.438 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:24.438 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:06:24.438 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 22:06:24.438 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38461, sync = True, waitForSettling = False)
17-03-17 22:06:24.438 -07 000000475 INF: Z Motor: Moving to -0.176063 mm, started at -0.169559 mm, distance = -6.50 um
17-03-17 22:06:24.448 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:24.458 -07 000000475 INF: FPGA: Xmit ZDACW 38461\n [Z Motor]
17-03-17 22:06:24.628 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 22:06:24.628 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:06:24.628 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:24.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 22:06:24.628 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 22:06:24.628 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:24.628 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:24.628 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:24.628 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:06:24.638 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:06:24.638 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:24.638 -07 000000448 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:06:24.638 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:06:24.638 -07 000000475 INF: FPGA: 'ZDACW 38461' command took 0 ms to send, 179 ms to get response, and 199 ms overall
17-03-17 22:06:24.648 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:24.648 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 199 ms to get response, and 205 ms overall
17-03-17 22:06:24.648 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 189 ms to get response, and 202 ms overall
17-03-17 22:06:24.648 -07 000000623 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:24.648 -07 000000448 INF: FPGA: Recv ZDACR 38461
17-03-17 22:06:24.648 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:24.648 -07 000000623 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:06:24.658 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:24.658 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:24.658 -07 000000475 INF: Z Motor: MoveAbsStepped took 212 ms (did NOT wait for settling yet))
17-03-17 22:06:24.668 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:24.868 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:24.868 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 22:06:25.028 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:06:25.028 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:06:25.068 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:25.068 -07 000000448 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:06:25.078 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:25.078 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:25.078 -07 000000623 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:06:25.078 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-17 22:06:26.028 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:26.028 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:06:26.038 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:26.038 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:26.058 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:26.058 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:26.058 -07 000000623 INF: Y Motor: Moved to 68.2051 after 1614 ms (table move)
17-03-17 22:06:26.058 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176063 mm (DAC = 38461)
17-03-17 22:06:26.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.058 -07 000000448 INF: FPGA: Recv ZSGSRD 36694
17-03-17 22:06:26.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:06:26.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.068 -07 000000480 INF: FPGA: Recv ZSGSRD 36692
17-03-17 22:06:26.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.078 -07 000000551 INF: FPGA: Recv ZSGSRD 36699
17-03-17 22:06:26.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.088 -07 000000448 INF: FPGA: Recv ZSGSRD 36698
17-03-17 22:06:26.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36707
17-03-17 22:06:26.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.108 -07 000000480 INF: FPGA: Recv ZSGSRD 36697
17-03-17 22:06:26.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.118 -07 000000576 INF: FPGA: Recv ZSGSRD 36690
17-03-17 22:06:26.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.128 -07 000000448 INF: FPGA: Recv ZSGSRD 36694
17-03-17 22:06:26.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.138 -07 000000512 INF: FPGA: Recv ZSGSRD 36695
17-03-17 22:06:26.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:26.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36702
17-03-17 22:06:26.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.158 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:26.158 -07 000000576 INF: FPGA: Recv ZPIEZORD 33063
17-03-17 22:06:26.168 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.168 -07 000000561 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.869 V. Piezo Error = -8.1 V.
17-03-17 22:06:26.168 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36697 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36696 (-175.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36690 (-175.1 uncal um), Max = 36707 (-175.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:26.168 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36697, posNoise = 10, negNoise = 7
17-03-17 22:06:26.168 -07 000000561 INF: Z Motor: After move to -0.176063, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:26.168 -07 000000561 INF: Z Motor: Settle wait time = 1615 ms, measure time = 105 ms (allowed 150 ms), total time = 1720 ms
17-03-17 22:06:26.168 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:26.218 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1775 ms
17-03-17 22:06:26.218 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:26.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:26.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:26.218 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:26.218 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:26.218 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:26.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:26.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:26.218 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:26.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:26.228 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:26.238 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:06:26.238 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:06:26.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:26.288 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:06:26.488 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:06:26.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:06:26.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:26.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:06:26.518 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:26.528 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:26.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:06:26.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:06:26.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:26.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:26.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:06:26.628 -07 000000623 INF: Autofocus start
17-03-17 22:06:26.628 -07 000000623 INF: MeasureProfile start
17-03-17 22:06:26.628 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:26.628 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:26.638 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:26.638 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:26.638 -07 000000623 INF: MeasureProfile done
17-03-17 22:06:26.638 -07 000000623 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:06:26.638 -07 000000623 INF: Autofocus finished
17-03-17 22:06:26.838 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:26.838 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:26.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.176072664977337. ----------
17-03-17 22:06:26.848 -07 000000610 INF: Cycle	59	Tile	11	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:26.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36923, sync = True, waitForSettling = True)
17-03-17 22:06:26.848 -07 000000610 INF: Z Motor: Moving to -0.169023 mm, started at -0.176073 mm, distance = 7.05 um
17-03-17 22:06:26.848 -07 000000610 INF: FPGA: Xmit ZDACW 36923\n [Z Motor]
17-03-17 22:06:26.848 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:06:26.858 -07 000000610 INF: FPGA: 'ZDACW 36923' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:26.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:26.858 -07 000000480 INF: FPGA: Recv ZDACR 36923
17-03-17 22:06:26.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:26.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:26.938 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:27.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35607
17-03-17 22:06:27.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:27.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.028 -07 000000623 INF: FPGA: Recv ZSGSRD 35602
17-03-17 22:06:27.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.038 -07 000000475 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:06:27.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.048 -07 000000623 INF: FPGA: Recv ZSGSRD 35600
17-03-17 22:06:27.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.058 -07 000000475 INF: FPGA: Recv ZSGSRD 35602
17-03-17 22:06:27.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.068 -07 000000448 INF: FPGA: Recv ZSGSRD 35597
17-03-17 22:06:27.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.078 -07 000000512 INF: FPGA: Recv ZSGSRD 35603
17-03-17 22:06:27.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35602
17-03-17 22:06:27.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35602
17-03-17 22:06:27.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:27.108 -07 000000448 INF: FPGA: Recv ZSGSRD 35601
17-03-17 22:06:27.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:27.118 -07 000000480 INF: FPGA: Recv ZPIEZORD 31609
17-03-17 22:06:27.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:27.128 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -8.8 V.
17-03-17 22:06:27.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35602 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35597 (-168.1 uncal um), Max = 35607 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:06:27.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35602, posNoise = 5, negNoise = 5
17-03-17 22:06:27.128 -07 000000610 INF: Z Motor: After move to -0.169023, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:27.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 22:06:27.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:27.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:27.128 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:27.128 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:27.128 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:27.128 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:27.128 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:27.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:27.128 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:06:27.128 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:27.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:27.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:27.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:27.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:27.138 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:27.138 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:27.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:06:27.148 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:06:27.148 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:06:27.148 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:06:27.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37099 150\n [Camera]
17-03-17 22:06:27.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:27.788 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:27.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:27.798 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:27.798 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:27.798 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:06:27.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:27.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:27.798 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:27.798 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:27.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:06:27.988 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37099 831
17-03-17 22:06:28.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:28.168 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:06:28.168 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 22:06:28.168 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:28.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:06:28.168 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:06:28.168 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:28.178 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:28.178 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:06:28.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:28.188 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:06:28.348 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:28.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:28.348 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:28.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:28.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:28.358 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:28.358 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:28.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:06:28.358 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:28.358 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:06:28.538 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:28.538 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:28.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37099 150' command took 2 ms to send, 1388 ms to get response, and 1393 ms overall
17-03-17 22:06:28.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:28.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169038152682109. ------
17-03-17 22:06:28.548 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:28.548 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17563 mm
17-03-17 22:06:28.548 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:28.548 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:28.548 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38367, sync = True, waitForSettling = False)
17-03-17 22:06:28.558 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:06:28.558 -07 000000551 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:06:28.558 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:28.558 -07 000000623 INF: Z Motor: Moving to -0.175633 mm, started at -0.169038 mm, distance = -6.59 um
17-03-17 22:06:28.558 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:28.558 -07 000000476 INF: FPGA: Recv YRDPOS 139685
17-03-17 22:06:28.568 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:28.568 -07 000000623 INF: FPGA: Xmit ZDACW 38367\n [Z Motor]
17-03-17 22:06:28.568 -07 000000551 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:28.568 -07 000000551 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:28.568 -07 000000551 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:06:28.568 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:06:28.578 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:28.578 -07 000000623 INF: FPGA: 'ZDACW 38367' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:28.588 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:28.598 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:28.738 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:06:28.738 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:06:28.738 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:28.738 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:28.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 22:06:28.748 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:06:28.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:28.748 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:28.748 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:06:28.748 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:06:28.758 -07 000000486 INF: FPGA: Recv ZDACR 38367
17-03-17 22:06:28.758 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 155 ms to get response, and 185 ms overall
17-03-17 22:06:28.758 -07 000000623 INF: Z Motor: MoveAbsStepped took 205 ms (did NOT wait for settling yet))
17-03-17 22:06:28.778 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:28.778 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 22:06:28.958 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:06:28.958 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 22:06:28.998 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:28.998 -07 000000623 INF: FPGA: Recv YRDPOS 141368
17-03-17 22:06:29.008 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:29.008 -07 000000551 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:29.008 -07 000000551 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 22:06:29.008 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-17 22:06:29.068 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.994908,
17-03-17 22:06:29.958 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:29.958 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:06:29.968 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:29.968 -07 000000551 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:29.988 -07 000000551 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:29.988 -07 000000551 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:29.988 -07 000000551 INF: Y Motor: Moved to 69.0278 after 1435 ms (table move)
17-03-17 22:06:29.988 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175633 mm (DAC = 38367)
17-03-17 22:06:29.988 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:29.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36636
17-03-17 22:06:29.998 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:06:29.998 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:29.998 -07 000000623 INF: FPGA: Recv ZSGSRD 36622
17-03-17 22:06:30.008 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:30.008 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.008 -07 000000462 INF: FPGA: Recv ZSGSRD 36630
17-03-17 22:06:30.018 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.018 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.018 -07 000000462 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:06:30.028 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.028 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.028 -07 000000486 INF: FPGA: Recv ZSGSRD 36635
17-03-17 22:06:30.038 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.038 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.038 -07 000000462 INF: FPGA: Recv ZSGSRD 36632
17-03-17 22:06:30.048 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.048 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.048 -07 000000551 INF: FPGA: Recv ZSGSRD 36627
17-03-17 22:06:30.058 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36625
17-03-17 22:06:30.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.068 -07 000000462 INF: FPGA: Recv ZSGSRD 36622
17-03-17 22:06:30.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36625
17-03-17 22:06:30.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.088 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:30.088 -07 000000462 INF: FPGA: Recv ZPIEZORD 32974
17-03-17 22:06:30.098 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.098 -07 000000512 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.1 V.
17-03-17 22:06:30.098 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36629 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36628 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36622 (-174.7 uncal um), Max = 36636 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:30.098 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36629, posNoise = 7, negNoise = 7
17-03-17 22:06:30.098 -07 000000512 INF: Z Motor: After move to -0.175633, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:30.098 -07 000000512 INF: Z Motor: Settle wait time = 1438 ms, measure time = 102 ms (allowed 150 ms), total time = 1540 ms
17-03-17 22:06:30.098 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:30.148 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 22:06:30.148 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:30.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:30.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:30.148 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:30.148 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:30.148 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:30.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:30.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:30.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:30.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:30.158 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:30.158 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:06:30.158 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:06:30.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:30.208 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:30.408 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:30.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:30.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:30.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:06:30.448 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:30.448 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:30.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 22:06:30.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:06:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:30.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:30.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:06:30.548 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:30.548 -07 000000512 INF: Autofocus start
17-03-17 22:06:30.548 -07 000000512 INF: MeasureProfile start
17-03-17 22:06:30.548 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:30.558 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:30.558 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:30.558 -07 000000512 INF: MeasureProfile done
17-03-17 22:06:30.558 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:06:30.558 -07 000000512 INF: Autofocus finished
17-03-17 22:06:30.758 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:30.758 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:30.758 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175635818551697. ----------
17-03-17 22:06:30.758 -07 000000610 INF: Cycle	59	Tile	12	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:30.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36899, sync = True, waitForSettling = True)
17-03-17 22:06:30.768 -07 000000610 INF: Z Motor: Moving to -0.168913 mm, started at -0.175636 mm, distance = 6.72 um
17-03-17 22:06:30.768 -07 000000610 INF: FPGA: Xmit ZDACW 36899\n [Z Motor]
17-03-17 22:06:30.768 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:06:30.778 -07 000000610 INF: FPGA: 'ZDACW 36899' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:30.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:30.778 -07 000000382 INF: FPGA: Recv ZDACR 36899
17-03-17 22:06:30.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:30.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35581
17-03-17 22:06:30.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:30.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.948 -07 000000462 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:06:30.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.958 -07 000000547 INF: FPGA: Recv ZSGSRD 35584
17-03-17 22:06:30.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.968 -07 000000551 INF: FPGA: Recv ZSGSRD 35581
17-03-17 22:06:30.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:30.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.978 -07 000000512 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:06:30.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.988 -07 000000623 INF: FPGA: Recv ZSGSRD 35588
17-03-17 22:06:30.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:30.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:30.998 -07 000000547 INF: FPGA: Recv ZSGSRD 35587
17-03-17 22:06:31.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:31.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:31.018 -07 000000551 INF: FPGA: Recv ZSGSRD 35582
17-03-17 22:06:31.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:31.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:31.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35581
17-03-17 22:06:31.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:31.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:31.038 -07 000000547 INF: FPGA: Recv ZSGSRD 35587
17-03-17 22:06:31.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:31.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:31.048 -07 000000382 INF: FPGA: Recv ZPIEZORD 31599
17-03-17 22:06:31.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:31.058 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -8.8 V.
17-03-17 22:06:31.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35585 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35586 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35581 (-168.0 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:06:31.058 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35585, posNoise = 3, negNoise = 4
17-03-17 22:06:31.058 -07 000000610 INF: Z Motor: After move to -0.168913, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:31.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 22:06:31.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:31.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:31.058 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:31.058 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:31.058 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:31.058 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:31.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:31.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:31.058 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:06:31.058 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:31.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:06:31.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:31.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:31.068 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:31.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:06:31.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:31.068 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:06:31.068 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:06:31.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:06:31.078 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:06:31.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 37076 150\n [Camera]
17-03-17 22:06:31.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:31.728 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:31.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:31.728 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:31.728 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:31.728 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:06:31.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:31.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:31.728 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:31.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:31.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:06:31.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37076 830
17-03-17 22:06:31.938 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:31.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:32.068 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:32.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:06:32.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 492 ms.
17-03-17 22:06:32.218 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 22:06:32.218 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:32.218 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 489 ms.
17-03-17 22:06:32.218 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:32.218 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:32.218 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 22:06:32.228 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:32.228 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 22:06:32.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:32.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:32.278 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:32.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:32.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:32.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:32.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:32.288 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:32.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 22:06:32.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 22:06:32.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:32.478 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:32.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 37076 150' command took 2 ms to send, 1390 ms to get response, and 1396 ms overall
17-03-17 22:06:32.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:32.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.168928941075699. ------
17-03-17 22:06:32.478 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:32.478 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17526 mm
17-03-17 22:06:32.478 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:32.478 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:32.488 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:32.488 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:32.488 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38285, sync = True, waitForSettling = False)
17-03-17 22:06:32.488 -07 000000424 INF: Z Motor: Moving to -0.175257 mm, started at -0.168929 mm, distance = -6.33 um
17-03-17 22:06:32.488 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:06:32.488 -07 000000512 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 22:06:32.498 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:32.498 -07 000000438 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:06:32.508 -07 000000424 INF: FPGA: Xmit ZDACW 38285\n [Z Motor]
17-03-17 22:06:32.508 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:06:32.508 -07 000000512 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:32.508 -07 000000512 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:32.508 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-17 22:06:32.508 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:06:32.518 -07 000000424 INF: FPGA: 'ZDACW 38285' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:06:32.518 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:32.518 -07 000000480 INF: FPGA: Recv ZDACR 38285
17-03-17 22:06:32.528 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:32.528 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:32.528 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:06:32.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:06:32.678 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:06:32.678 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:32.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:06:32.678 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:06:32.678 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:32.688 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:32.688 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:06:32.688 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:32.688 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:32.688 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:32.698 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 22:06:32.898 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 22:06:32.898 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:06:32.938 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:32.938 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:06:32.948 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:32.948 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:32.948 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:06:32.948 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 22:06:33.898 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:33.898 -07 000000576 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:06:33.908 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:33.908 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:33.928 -07 000000512 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:33.928 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:33.928 -07 000000512 INF: Y Motor: Moved to 69.8633 after 1442 ms (table move)
17-03-17 22:06:33.928 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175257 mm (DAC = 38285)
17-03-17 22:06:33.928 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.938 -07 000000547 INF: FPGA: Recv ZSGSRD 36578
17-03-17 22:06:33.938 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:06:33.938 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.938 -07 000000475 INF: FPGA: Recv ZSGSRD 36567
17-03-17 22:06:33.948 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:33.948 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.948 -07 000000561 INF: FPGA: Recv ZSGSRD 36578
17-03-17 22:06:33.958 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:33.958 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.958 -07 000000462 INF: FPGA: Recv ZSGSRD 36579
17-03-17 22:06:33.968 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:33.968 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.968 -07 000000462 INF: FPGA: Recv ZSGSRD 36572
17-03-17 22:06:33.978 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:33.978 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.978 -07 000000561 INF: FPGA: Recv ZSGSRD 36570
17-03-17 22:06:33.988 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:33.988 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.988 -07 000000462 INF: FPGA: Recv ZSGSRD 36570
17-03-17 22:06:33.998 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:33.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:33.998 -07 000000480 INF: FPGA: Recv ZSGSRD 36562
17-03-17 22:06:34.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.008 -07 000000561 INF: FPGA: Recv ZSGSRD 36570
17-03-17 22:06:34.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.018 -07 000000561 INF: FPGA: Recv ZSGSRD 36573
17-03-17 22:06:34.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.028 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:34.028 -07 000000561 INF: FPGA: Recv ZPIEZORD 32856
17-03-17 22:06:34.038 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.038 -07 000000486 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.2 V.
17-03-17 22:06:34.038 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36571 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36562 (-174.3 uncal um), Max = 36579 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:06:34.038 -07 000000486 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 7, negNoise = 10
17-03-17 22:06:34.038 -07 000000486 INF: Z Motor: After move to -0.175257, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:34.038 -07 000000486 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 22:06:34.038 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:34.088 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 22:06:34.088 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:34.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:34.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:34.088 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:34.088 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:34.088 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:34.088 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:34.088 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:06:34.088 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:34.098 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:34.098 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:34.108 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:06:34.108 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:06:34.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:34.158 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:34.358 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:34.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:34.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:34.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 22:06:34.398 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:34.398 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:34.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 290 ms overall
17-03-17 22:06:34.428 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.02213,
17-03-17 22:06:34.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:06:34.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:34.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:34.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:06:34.498 -07 000000480 INF: Autofocus start
17-03-17 22:06:34.498 -07 000000480 INF: MeasureProfile start
17-03-17 22:06:34.498 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:34.498 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:34.508 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:34.508 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:34.508 -07 000000480 INF: MeasureProfile done
17-03-17 22:06:34.508 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:06:34.508 -07 000000480 INF: Autofocus finished
17-03-17 22:06:34.708 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:34.708 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:34.708 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175269638459617. ----------
17-03-17 22:06:34.708 -07 000000610 INF: Cycle	59	Tile	13	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:34.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-17 22:06:34.718 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.175270 mm, distance = 6.73 um
17-03-17 22:06:34.718 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-17 22:06:34.718 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:06:34.728 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:34.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:34.728 -07 000000462 INF: FPGA: Recv ZDACR 36818
17-03-17 22:06:34.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.888 -07 000000623 INF: FPGA: Recv ZSGSRD 35533
17-03-17 22:06:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.898 -07 000000561 INF: FPGA: Recv ZSGSRD 35528
17-03-17 22:06:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.908 -07 000000623 INF: FPGA: Recv ZSGSRD 35528
17-03-17 22:06:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.918 -07 000000462 INF: FPGA: Recv ZSGSRD 35520
17-03-17 22:06:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.928 -07 000000561 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:06:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.938 -07 000000486 INF: FPGA: Recv ZSGSRD 35528
17-03-17 22:06:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.948 -07 000000480 INF: FPGA: Recv ZSGSRD 35523
17-03-17 22:06:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.958 -07 000000623 INF: FPGA: Recv ZSGSRD 35529
17-03-17 22:06:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35527
17-03-17 22:06:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:34.978 -07 000000561 INF: FPGA: Recv ZSGSRD 35523
17-03-17 22:06:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:34.988 -07 000000462 INF: FPGA: Recv ZPIEZORD 31496
17-03-17 22:06:34.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:34.998 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -8.9 V.
17-03-17 22:06:34.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35527 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35520 (-167.6 uncal um), Max = 35533 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:34.998 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35527, posNoise = 6, negNoise = 7
17-03-17 22:06:34.998 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:34.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:06:34.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:34.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:34.998 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:34.998 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:34.998 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:34.998 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:34.998 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:34.998 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:34.998 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:06:34.998 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:34.998 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:34.998 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:35.008 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:06:35.008 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:35.008 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:35.008 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:35.008 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:06:35.008 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:06:35.008 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:06:35.008 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:06:35.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36995 150\n [Camera]
17-03-17 22:06:35.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:35.658 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:35.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:35.658 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:35.658 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:35.658 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 22:06:35.658 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:35.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:35.658 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:35.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:35.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 22:06:35.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36995 830
17-03-17 22:06:35.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:36.048 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 22:06:36.048 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:06:36.048 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:36.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 22:06:36.048 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 22:06:36.048 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:36.048 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:36.048 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:06:36.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:36.058 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:06:36.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:36.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:36.218 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:36.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:36.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:36.218 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:36.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:06:36.218 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:36.218 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:36.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:06:36.408 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:36.408 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:36.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36995 150' command took 2 ms to send, 1385 ms to get response, and 1393 ms overall
17-03-17 22:06:36.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:36.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168556336771476. ------
17-03-17 22:06:36.418 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17509 mm
17-03-17 22:06:36.418 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:36.418 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:36.418 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:36.418 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:06:36.418 -07 000000476 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:06:36.418 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38249, sync = True, waitForSettling = False)
17-03-17 22:06:36.418 -07 000000475 INF: Z Motor: Moving to -0.175093 mm, started at -0.168556 mm, distance = -6.54 um
17-03-17 22:06:36.428 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:36.428 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:36.428 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:06:36.438 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:06:36.438 -07 000000475 INF: FPGA: Xmit ZDACW 38249\n [Z Motor]
17-03-17 22:06:36.438 -07 000000476 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:36.438 -07 000000476 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:36.438 -07 000000476 INF: Y Motor: Moving 1343 steps-19
17-03-17 22:06:36.438 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:06:36.448 -07 000000475 INF: FPGA: 'ZDACW 38249' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:06:36.448 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:36.458 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:36.468 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:36.468 -07 000000561 INF: FPGA: Recv ZDACR 38249
17-03-17 22:06:36.478 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:36.478 -07 000000475 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 22:06:36.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:06:36.608 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:06:36.608 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:36.608 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:06:36.608 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:06:36.618 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:36.618 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:36.618 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:36.618 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:06:36.618 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:06:36.648 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:36.648 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 22:06:36.828 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:06:36.828 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:06:36.868 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:36.868 -07 000000623 INF: FPGA: Recv YRDPOS 144770
17-03-17 22:06:36.878 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:36.878 -07 000000476 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:36.878 -07 000000476 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 22:06:36.878 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 22:06:36.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:37.828 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:37.828 -07 000000438 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:06:37.838 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:37.838 -07 000000476 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:37.858 -07 000000476 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:37.858 -07 000000476 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:37.858 -07 000000476 INF: Y Motor: Moved to 70.6890 after 1441 ms (table move)
17-03-17 22:06:37.858 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175093 mm (DAC = 38249)
17-03-17 22:06:37.858 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.868 -07 000000476 INF: FPGA: Recv ZSGSRD 36553
17-03-17 22:06:37.868 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:06:37.868 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.868 -07 000000476 INF: FPGA: Recv ZSGSRD 36542
17-03-17 22:06:37.878 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.878 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.878 -07 000000476 INF: FPGA: Recv ZSGSRD 36542
17-03-17 22:06:37.888 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.888 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.888 -07 000000476 INF: FPGA: Recv ZSGSRD 36550
17-03-17 22:06:37.898 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.898 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.898 -07 000000623 INF: FPGA: Recv ZSGSRD 36546
17-03-17 22:06:37.908 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.908 -07 000000486 INF: FPGA: Recv ZSGSRD 36551
17-03-17 22:06:37.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:37.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.918 -07 000000486 INF: FPGA: Recv ZSGSRD 36546
17-03-17 22:06:37.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.928 -07 000000480 INF: FPGA: Recv ZSGSRD 36545
17-03-17 22:06:37.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.938 -07 000000486 INF: FPGA: Recv ZSGSRD 36547
17-03-17 22:06:37.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:37.948 -07 000000462 INF: FPGA: Recv ZSGSRD 36542
17-03-17 22:06:37.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.958 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:37.958 -07 000000476 INF: FPGA: Recv ZPIEZORD 32858
17-03-17 22:06:37.968 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:37.968 -07 000000448 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.2 V.
17-03-17 22:06:37.968 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36546 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36546 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36542 (-174.2 uncal um), Max = 36553 (-174.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:06:37.968 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36546, posNoise = 7, negNoise = 4
17-03-17 22:06:37.968 -07 000000448 INF: Z Motor: After move to -0.175093, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:37.968 -07 000000448 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 22:06:37.968 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:38.018 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:06:38.018 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:38.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:38.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:38.018 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:38.018 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:38.018 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:38.018 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:38.018 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:38.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:38.028 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:38.028 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:38.038 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:06:38.038 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:06:38.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:38.078 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:38.278 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:38.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:38.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:38.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 22:06:38.318 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:38.318 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:38.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:06:38.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:06:38.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:38.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:06:38.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:06:38.418 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:38.418 -07 000000476 INF: Autofocus start
17-03-17 22:06:38.418 -07 000000476 INF: MeasureProfile start
17-03-17 22:06:38.418 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:38.428 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:06:38.428 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:38.448 -07 000000476 INF: MeasureProfile done
17-03-17 22:06:38.448 -07 000000476 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:06:38.448 -07 000000476 INF: Autofocus finished
17-03-17 22:06:38.628 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:38.628 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 22:06:38.638 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.175102608943931. ----------
17-03-17 22:06:38.638 -07 000000610 INF: Cycle	59	Tile	14	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:38.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36728, sync = True, waitForSettling = True)
17-03-17 22:06:38.638 -07 000000610 INF: Z Motor: Moving to -0.168130 mm, started at -0.175103 mm, distance = 6.97 um
17-03-17 22:06:38.638 -07 000000610 INF: FPGA: Xmit ZDACW 36728\n [Z Motor]
17-03-17 22:06:38.648 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:06:38.648 -07 000000610 INF: FPGA: 'ZDACW 36728' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:06:38.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:38.648 -07 000000462 INF: FPGA: Recv ZDACR 36728
17-03-17 22:06:38.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:38.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.808 -07 000000448 INF: FPGA: Recv ZSGSRD 35465
17-03-17 22:06:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.818 -07 000000476 INF: FPGA: Recv ZSGSRD 35461
17-03-17 22:06:38.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.828 -07 000000448 INF: FPGA: Recv ZSGSRD 35462
17-03-17 22:06:38.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.838 -07 000000462 INF: FPGA: Recv ZSGSRD 35460
17-03-17 22:06:38.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.848 -07 000000512 INF: FPGA: Recv ZSGSRD 35463
17-03-17 22:06:38.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.858 -07 000000486 INF: FPGA: Recv ZSGSRD 35467
17-03-17 22:06:38.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.868 -07 000000462 INF: FPGA: Recv ZSGSRD 35457
17-03-17 22:06:38.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.878 -07 000000462 INF: FPGA: Recv ZSGSRD 35471
17-03-17 22:06:38.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.888 -07 000000462 INF: FPGA: Recv ZSGSRD 35462
17-03-17 22:06:38.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:38.898 -07 000000486 INF: FPGA: Recv ZSGSRD 35461
17-03-17 22:06:38.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:38.908 -07 000000476 INF: FPGA: Recv ZPIEZORD 31429
17-03-17 22:06:38.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:38.918 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -8.9 V.
17-03-17 22:06:38.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35463 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35462 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35457 (-167.2 uncal um), Max = 35471 (-167.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:06:38.918 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35463, posNoise = 8, negNoise = 6
17-03-17 22:06:38.918 -07 000000610 INF: Z Motor: After move to -0.168130, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:38.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:06:38.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:38.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:38.918 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:38.918 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:38.918 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:38.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:38.918 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:38.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:38.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:38.918 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:38.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:38.928 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:38.928 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 22:06:38.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:38.928 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 22:06:38.928 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:38.938 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 22:06:38.938 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:06:38.938 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 22:06:38.938 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 22:06:38.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36905 150\n [Camera]
17-03-17 22:06:39.138 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:39.588 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:06:39.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:06:39.588 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:39.588 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:39.588 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:06:39.588 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:06:39.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:06:39.588 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:39.598 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:39.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:06:39.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36905 830
17-03-17 22:06:39.788 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.994908,
17-03-17 22:06:39.928 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:39.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:06:39.978 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:06:39.978 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:39.988 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:06:39.988 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:06:39.988 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:39.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:06:39.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:06:39.988 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:06:40.008 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:06:40.148 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:40.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:40.148 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:40.148 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:40.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:06:40.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:40.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:40.148 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:40.148 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:40.148 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:06:40.338 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:40.338 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:40.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36905 150' command took 2 ms to send, 1382 ms to get response, and 1393 ms overall
17-03-17 22:06:40.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:40.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.168145187194404. ------
17-03-17 22:06:40.338 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:40.338 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17473 mm
17-03-17 22:06:40.338 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:40.338 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:06:40.338 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:06:40.348 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:40.348 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:40.348 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:40.348 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38171, sync = True, waitForSettling = False)
17-03-17 22:06:40.348 -07 000000448 INF: Z Motor: Moving to -0.174736 mm, started at -0.168145 mm, distance = -6.59 um
17-03-17 22:06:40.348 -07 000000547 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:06:40.358 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:40.358 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:40.358 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:40.358 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-17 22:06:40.358 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:40.368 -07 000000448 INF: FPGA: Xmit ZDACW 38171\n [Z Motor]
17-03-17 22:06:40.368 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:06:40.378 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:40.378 -07 000000448 INF: FPGA: 'ZDACW 38171' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:06:40.388 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:40.388 -07 000000475 INF: FPGA: Recv ZDACR 38171
17-03-17 22:06:40.398 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:40.398 -07 000000448 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:06:40.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 22:06:40.528 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:06:40.538 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:40.538 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:40.538 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:06:40.538 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:06:40.538 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:40.538 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:06:40.548 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:06:40.548 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:06:40.558 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:40.558 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 22:06:40.748 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:06:40.748 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:06:40.788 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:40.798 -07 000000433 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:06:40.798 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:06:40.798 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:40.798 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:06:40.798 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 22:06:41.748 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:41.748 -07 000000476 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:06:41.758 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.758 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:41.778 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:41.778 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:41.778 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1436 ms (table move)
17-03-17 22:06:41.778 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174736 mm (DAC = 38171)
17-03-17 22:06:41.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.788 -07 000000512 INF: FPGA: Recv ZSGSRD 36483
17-03-17 22:06:41.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 22:06:41.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.788 -07 000000512 INF: FPGA: Recv ZSGSRD 36489
17-03-17 22:06:41.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:41.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.798 -07 000000512 INF: FPGA: Recv ZSGSRD 36482
17-03-17 22:06:41.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36489
17-03-17 22:06:41.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.818 -07 000000448 INF: FPGA: Recv ZSGSRD 36494
17-03-17 22:06:41.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.828 -07 000000448 INF: FPGA: Recv ZSGSRD 36496
17-03-17 22:06:41.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.838 -07 000000448 INF: FPGA: Recv ZSGSRD 36494
17-03-17 22:06:41.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.848 -07 000000551 INF: FPGA: Recv ZSGSRD 36494
17-03-17 22:06:41.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.858 -07 000000551 INF: FPGA: Recv ZSGSRD 36488
17-03-17 22:06:41.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:41.868 -07 000000551 INF: FPGA: Recv ZSGSRD 36490
17-03-17 22:06:41.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.878 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:41.878 -07 000000551 INF: FPGA: Recv ZPIEZORD 32807
17-03-17 22:06:41.888 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:41.888 -07 000000462 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.825 V. Piezo Error = -8.2 V.
17-03-17 22:06:41.888 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36490 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36490 (-173.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36482 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:06:41.888 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36490, posNoise = 6, negNoise = 8
17-03-17 22:06:41.888 -07 000000462 INF: Z Motor: After move to -0.174736, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:41.888 -07 000000462 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:06:41.888 -07 000000462 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:41.938 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 22:06:41.938 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:41.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:41.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:41.938 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:41.938 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:41.938 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:41.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:41.938 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:41.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:41.938 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:41.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:06:41.948 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:41.958 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:06:41.958 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 22:06:41.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:42.008 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:42.208 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:42.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:42.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:42.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 22:06:42.248 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:42.248 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:42.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 22:06:42.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:06:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:42.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:42.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:06:42.348 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:42.348 -07 000000512 INF: Autofocus start
17-03-17 22:06:42.348 -07 000000512 INF: MeasureProfile start
17-03-17 22:06:42.348 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:42.358 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:42.358 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:42.358 -07 000000512 INF: MeasureProfile done
17-03-17 22:06:42.358 -07 000000512 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 22:06:42.358 -07 000000512 INF: Autofocus finished
17-03-17 22:06:42.558 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:42.558 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:42.558 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174742853063992. ----------
17-03-17 22:06:42.558 -07 000000610 INF: Cycle	59	Tile	15	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:42.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36595, sync = True, waitForSettling = True)
17-03-17 22:06:42.568 -07 000000610 INF: Z Motor: Moving to -0.167521 mm, started at -0.174743 mm, distance = 7.22 um
17-03-17 22:06:42.568 -07 000000610 INF: FPGA: Xmit ZDACW 36595\n [Z Motor]
17-03-17 22:06:42.568 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:06:42.578 -07 000000610 INF: FPGA: 'ZDACW 36595' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:42.578 -07 000000486 INF: FPGA: Recv ZDACR 36595
17-03-17 22:06:42.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.738 -07 000000486 INF: FPGA: Recv ZSGSRD 35369
17-03-17 22:06:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.748 -07 000000382 INF: FPGA: Recv ZSGSRD 35367
17-03-17 22:06:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.758 -07 000000486 INF: FPGA: Recv ZSGSRD 35369
17-03-17 22:06:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35361
17-03-17 22:06:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.778 -07 000000486 INF: FPGA: Recv ZSGSRD 35368
17-03-17 22:06:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.788 -07 000000512 INF: FPGA: Recv ZSGSRD 35368
17-03-17 22:06:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.798 -07 000000512 INF: FPGA: Recv ZSGSRD 35365
17-03-17 22:06:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.808 -07 000000462 INF: FPGA: Recv ZSGSRD 35366
17-03-17 22:06:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.818 -07 000000512 INF: FPGA: Recv ZSGSRD 35363
17-03-17 22:06:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:42.828 -07 000000512 INF: FPGA: Recv ZSGSRD 35371
17-03-17 22:06:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:42.838 -07 000000382 INF: FPGA: Recv ZPIEZORD 31338
17-03-17 22:06:42.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:42.848 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -8.9 V.
17-03-17 22:06:42.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35367 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35368 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35361 (-166.6 uncal um), Max = 35371 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:06:42.848 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35367, posNoise = 4, negNoise = 6
17-03-17 22:06:42.848 -07 000000610 INF: Z Motor: After move to -0.167521, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:42.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:06:42.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:42.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:42.848 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:42.848 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:42.848 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:42.848 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:42.848 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:42.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:42.848 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:42.848 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:42.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:42.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:42.858 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:06:42.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:42.858 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:06:42.858 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:42.858 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:06:42.858 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:06:42.868 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:06:42.868 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:42.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36772 150\n [Camera]
17-03-17 22:06:43.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:43.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:43.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:43.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:43.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:43.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:06:43.518 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:43.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:43.518 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:43.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:43.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:06:43.708 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36772 830
17-03-17 22:06:43.858 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:43.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:06:43.898 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:06:43.898 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:43.898 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:06:43.898 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:06:43.898 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:43.898 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:43.898 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:43.898 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 22:06:43.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:06:44.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:44.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:44.068 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:44.068 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:44.068 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:06:44.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:44.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:44.078 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:44.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:44.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:06:44.258 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:44.258 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:44.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36772 150' command took 2 ms to send, 1389 ms to get response, and 1394 ms overall
17-03-17 22:06:44.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:44.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167528462828795. ------
17-03-17 22:06:44.268 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:44.268 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17411 mm
17-03-17 22:06:44.268 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:44.268 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:06:44.268 -07 000000561 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:06:44.278 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38034, sync = True, waitForSettling = False)
17-03-17 22:06:44.278 -07 000000424 INF: Z Motor: Moving to -0.174108 mm, started at -0.167528 mm, distance = -6.58 um
17-03-17 22:06:44.278 -07 000000424 INF: FPGA: Xmit ZDACW 38034\n [Z Motor]
17-03-17 22:06:44.278 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:44.278 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 22:06:44.278 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:06:44.288 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:44.288 -07 000000424 INF: FPGA: 'ZDACW 38034' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:44.288 -07 000000476 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:06:44.298 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:44.298 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 22:06:44.298 -07 000000561 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:44.298 -07 000000561 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:44.298 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:06:44.308 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:44.308 -07 000000475 INF: FPGA: Recv ZDACR 38034
17-03-17 22:06:44.318 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:44.318 -07 000000424 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:06:44.318 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:44.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:06:44.458 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:06:44.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:44.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 22:06:44.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:06:44.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:44.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:44.458 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:06:44.458 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:06:44.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:06:44.498 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:44.498 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 22:06:44.688 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:06:44.688 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:06:44.728 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:44.738 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:06:44.738 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:06:44.738 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:44.738 -07 000000561 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:06:44.738 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 22:06:45.148 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.004458,
17-03-17 22:06:45.688 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:45.688 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:06:45.698 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:45.698 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:45.718 -07 000000561 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:45.718 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:45.718 -07 000000561 INF: Y Motor: Moved to 72.3496 after 1445 ms (table move)
17-03-17 22:06:45.718 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174108 mm (DAC = 38034)
17-03-17 22:06:45.718 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.728 -07 000000438 INF: FPGA: Recv ZSGSRD 36399
17-03-17 22:06:45.728 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:06:45.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.728 -07 000000438 INF: FPGA: Recv ZSGSRD 36396
17-03-17 22:06:45.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:45.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.738 -07 000000486 INF: FPGA: Recv ZSGSRD 36390
17-03-17 22:06:45.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.748 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.748 -07 000000486 INF: FPGA: Recv ZSGSRD 36397
17-03-17 22:06:45.758 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.758 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.758 -07 000000486 INF: FPGA: Recv ZSGSRD 36390
17-03-17 22:06:45.768 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.768 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.768 -07 000000486 INF: FPGA: Recv ZSGSRD 36392
17-03-17 22:06:45.778 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.778 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.778 -07 000000486 INF: FPGA: Recv ZSGSRD 36396
17-03-17 22:06:45.788 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.788 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.788 -07 000000438 INF: FPGA: Recv ZSGSRD 36390
17-03-17 22:06:45.798 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.798 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.798 -07 000000438 INF: FPGA: Recv ZSGSRD 36390
17-03-17 22:06:45.808 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.808 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:45.808 -07 000000480 INF: FPGA: Recv ZSGSRD 36393
17-03-17 22:06:45.818 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.818 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:45.818 -07 000000480 INF: FPGA: Recv ZPIEZORD 32695
17-03-17 22:06:45.828 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:45.828 -07 000000512 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.2 V.
17-03-17 22:06:45.828 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36393 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36392 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36390 (-173.2 uncal um), Max = 36399 (-173.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:06:45.828 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36393, posNoise = 6, negNoise = 3
17-03-17 22:06:45.828 -07 000000512 INF: Z Motor: After move to -0.174108, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:45.828 -07 000000512 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:06:45.828 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:45.878 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:06:45.878 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:45.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:45.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:45.878 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:45.878 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:45.878 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:45.878 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:45.878 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:06:45.878 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:45.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:45.888 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:45.898 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:06:45.898 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:06:45.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:45.938 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:46.138 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:46.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:46.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:46.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:06:46.178 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:46.178 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:46.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:06:46.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 22:06:46.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:46.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:06:46.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 22:06:46.278 -07 000000475 INF: Autofocus start
17-03-17 22:06:46.278 -07 000000475 INF: MeasureProfile start
17-03-17 22:06:46.278 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:46.278 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:46.288 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:46.288 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:46.288 -07 000000475 INF: MeasureProfile done
17-03-17 22:06:46.288 -07 000000475 INF: X=-32  Z correction [um]=-0.2344
17-03-17 22:06:46.288 -07 000000475 INF: Autofocus finished
17-03-17 22:06:46.488 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:46.488 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 22:06:46.488 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.174119704486241. ----------
17-03-17 22:06:46.498 -07 000000610 INF: Cycle	59	Tile	16	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:46.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36496, sync = True, waitForSettling = True)
17-03-17 22:06:46.498 -07 000000610 INF: Z Motor: Moving to -0.167068 mm, started at -0.174120 mm, distance = 7.05 um
17-03-17 22:06:46.498 -07 000000610 INF: FPGA: Xmit ZDACW 36496\n [Z Motor]
17-03-17 22:06:46.498 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:06:46.508 -07 000000610 INF: FPGA: 'ZDACW 36496' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:06:46.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:46.508 -07 000000424 INF: FPGA: Recv ZDACR 36496
17-03-17 22:06:46.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:46.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.668 -07 000000438 INF: FPGA: Recv ZSGSRD 35296
17-03-17 22:06:46.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35298
17-03-17 22:06:46.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.688 -07 000000424 INF: FPGA: Recv ZSGSRD 35295
17-03-17 22:06:46.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.698 -07 000000486 INF: FPGA: Recv ZSGSRD 35298
17-03-17 22:06:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.708 -07 000000424 INF: FPGA: Recv ZSGSRD 35295
17-03-17 22:06:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.718 -07 000000424 INF: FPGA: Recv ZSGSRD 35296
17-03-17 22:06:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.728 -07 000000424 INF: FPGA: Recv ZSGSRD 35296
17-03-17 22:06:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.738 -07 000000486 INF: FPGA: Recv ZSGSRD 35297
17-03-17 22:06:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.748 -07 000000382 INF: FPGA: Recv ZSGSRD 35299
17-03-17 22:06:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:46.758 -07 000000424 INF: FPGA: Recv ZSGSRD 35295
17-03-17 22:06:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:46.768 -07 000000382 INF: FPGA: Recv ZPIEZORD 31227
17-03-17 22:06:46.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:46.778 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.0 V.
17-03-17 22:06:46.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35296 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35296 (-166.2 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35295 (-166.2 uncal um), Max = 35299 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 22:06:46.778 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35296, posNoise = 3, negNoise = 1
17-03-17 22:06:46.778 -07 000000610 INF: Z Motor: After move to -0.167068, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:46.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 22:06:46.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:46.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:46.778 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:46.778 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:46.778 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:46.778 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:46.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:46.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:46.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:06:46.778 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:46.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 22:06:46.778 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:46.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:46.788 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:46.788 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:46.788 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:46.798 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:06:46.798 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:46.798 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:06:46.798 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:46.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36672 150\n [Camera]
17-03-17 22:06:46.938 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:46.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:47.438 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:47.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:47.448 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:47.448 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:47.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:06:47.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:47.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:47.448 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:47.448 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:47.448 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:06:47.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36672 830
17-03-17 22:06:47.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:47.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 22:06:47.818 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 22:06:47.818 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:47.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:06:47.818 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 22:06:47.818 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:47.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:47.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:47.828 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:06:47.828 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:06:47.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:47.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:47.998 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:47.998 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:47.998 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:06:47.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:47.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:47.998 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:48.138 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:48.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:06:48.188 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:48.188 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:48.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36672 150' command took 2 ms to send, 1387 ms to get response, and 1393 ms overall
17-03-17 22:06:48.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:48.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.16707234376673. ------
17-03-17 22:06:48.198 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:48.198 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17350 mm
17-03-17 22:06:48.198 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:48.198 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:06:48.198 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 22:06:48.198 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37900, sync = True, waitForSettling = False)
17-03-17 22:06:48.198 -07 000000448 INF: Z Motor: Moving to -0.173495 mm, started at -0.167072 mm, distance = -6.42 um
17-03-17 22:06:48.198 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:48.208 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:48.208 -07 000000448 INF: FPGA: Xmit ZDACW 37900\n [Z Motor]
17-03-17 22:06:48.208 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:06:48.218 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:48.218 -07 000000448 INF: FPGA: 'ZDACW 37900' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:06:48.218 -07 000000475 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:06:48.228 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:48.228 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:06:48.228 -07 000000547 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:48.238 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:48.238 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:48.238 -07 000000547 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:06:48.238 -07 000000512 INF: FPGA: Recv ZDACR 37900
17-03-17 22:06:48.248 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:48.248 -07 000000448 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:06:48.248 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:48.408 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 410 ms.
17-03-17 22:06:48.408 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:06:48.408 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:48.418 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:06:48.418 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:06:48.428 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:48.428 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:06:48.538 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 22:06:48.538 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:06:48.538 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:48.538 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:06:48.548 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 543 ms.
17-03-17 22:06:48.618 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:06:48.618 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:06:48.658 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:48.668 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:06:48.668 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:06:48.668 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:48.668 -07 000000547 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:06:48.668 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 22:06:49.618 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:49.618 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:06:49.628 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:49.628 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:49.648 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:49.648 -07 000000547 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:06:49.648 -07 000000547 INF: Y Motor: Moved to 73.1763 after 1448 ms (table move)
17-03-17 22:06:49.648 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173495 mm (DAC = 37900)
17-03-17 22:06:49.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.658 -07 000000547 INF: FPGA: Recv ZSGSRD 36303
17-03-17 22:06:49.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:06:49.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.658 -07 000000547 INF: FPGA: Recv ZSGSRD 36302
17-03-17 22:06:49.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:49.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.668 -07 000000547 INF: FPGA: Recv ZSGSRD 36305
17-03-17 22:06:49.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.678 -07 000000476 INF: FPGA: Recv ZSGSRD 36306
17-03-17 22:06:49.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.688 -07 000000476 INF: FPGA: Recv ZSGSRD 36295
17-03-17 22:06:49.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.698 -07 000000476 INF: FPGA: Recv ZSGSRD 36303
17-03-17 22:06:49.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.708 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.708 -07 000000448 INF: FPGA: Recv ZSGSRD 36300
17-03-17 22:06:49.718 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:49.718 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.718 -07 000000512 INF: FPGA: Recv ZSGSRD 36293
17-03-17 22:06:49.728 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.728 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.728 -07 000000475 INF: FPGA: Recv ZSGSRD 36295
17-03-17 22:06:49.738 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:49.738 -07 000000475 INF: FPGA: Recv ZSGSRD 36296
17-03-17 22:06:49.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.748 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:49.748 -07 000000475 INF: FPGA: Recv ZPIEZORD 32614
17-03-17 22:06:49.758 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:49.758 -07 000000486 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.2 V.
17-03-17 22:06:49.758 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36300 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36301 (-172.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36293 (-172.6 uncal um), Max = 36306 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:49.758 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36300, posNoise = 6, negNoise = 7
17-03-17 22:06:49.758 -07 000000486 INF: Z Motor: After move to -0.173495, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:49.758 -07 000000486 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-17 22:06:49.758 -07 000000486 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:49.808 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 22:06:49.808 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:49.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:49.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:49.808 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:49.808 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:49.808 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:49.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:49.808 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:06:49.808 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:49.818 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:49.818 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:49.818 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:06:49.818 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:06:49.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:49.868 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:50.068 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:50.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:50.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:50.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:06:50.108 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:50.108 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:50.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 22:06:50.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:06:50.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:50.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:50.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:06:50.208 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:50.208 -07 000000448 INF: Autofocus start
17-03-17 22:06:50.208 -07 000000448 INF: MeasureProfile start
17-03-17 22:06:50.208 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:50.218 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:50.218 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:50.228 -07 000000448 INF: MeasureProfile done
17-03-17 22:06:50.228 -07 000000448 INF: X=32  Z correction [um]=0.09220707
17-03-17 22:06:50.228 -07 000000448 INF: Autofocus finished
17-03-17 22:06:50.418 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:50.418 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:50.418 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173522252757058. ----------
17-03-17 22:06:50.418 -07 000000610 INF: Cycle	59	Tile	17	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:50.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36433, sync = True, waitForSettling = True)
17-03-17 22:06:50.428 -07 000000610 INF: Z Motor: Moving to -0.166780 mm, started at -0.173522 mm, distance = 6.74 um
17-03-17 22:06:50.428 -07 000000610 INF: FPGA: Xmit ZDACW 36433\n [Z Motor]
17-03-17 22:06:50.428 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:06:50.438 -07 000000610 INF: FPGA: 'ZDACW 36433' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:50.438 -07 000000480 INF: FPGA: Recv ZDACR 36433
17-03-17 22:06:50.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:50.508 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.003063,
17-03-17 22:06:50.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.598 -07 000000547 INF: FPGA: Recv ZSGSRD 35252
17-03-17 22:06:50.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35240
17-03-17 22:06:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.618 -07 000000438 INF: FPGA: Recv ZSGSRD 35257
17-03-17 22:06:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.628 -07 000000438 INF: FPGA: Recv ZSGSRD 35259
17-03-17 22:06:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.638 -07 000000547 INF: FPGA: Recv ZSGSRD 35248
17-03-17 22:06:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35253
17-03-17 22:06:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35254
17-03-17 22:06:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.668 -07 000000547 INF: FPGA: Recv ZSGSRD 35249
17-03-17 22:06:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.678 -07 000000382 INF: FPGA: Recv ZSGSRD 35253
17-03-17 22:06:50.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:50.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35251
17-03-17 22:06:50.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:50.698 -07 000000438 INF: FPGA: Recv ZPIEZORD 31178
17-03-17 22:06:50.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:50.708 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.0 V.
17-03-17 22:06:50.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35252 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35252 (-165.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35240 (-165.8 uncal um), Max = 35259 (-166.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 22:06:50.708 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35252, posNoise = 7, negNoise = 12
17-03-17 22:06:50.708 -07 000000610 INF: Z Motor: After move to -0.166780, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:50.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:06:50.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:50.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:50.708 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:50.708 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:50.708 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:50.708 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:50.708 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 22:06:50.708 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:50.708 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:50.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:50.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:50.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:50.718 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:50.718 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:50.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:06:50.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:50.728 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:06:50.728 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:06:50.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:06:50.728 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:06:50.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36610 150\n [Camera]
17-03-17 22:06:50.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:51.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:51.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:51.378 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:51.378 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:51.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:51.378 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:51.378 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:51.378 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:06:51.388 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:51.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:06:51.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36610 830
17-03-17 22:06:51.718 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:51.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 22:06:51.768 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:06:51.768 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:51.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:06:51.768 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:06:51.768 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:51.768 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:51.768 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:06:51.768 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:06:51.778 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:06:51.928 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:51.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:51.928 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:51.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:51.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:51.938 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:52.058 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:52.058 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:52.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:06:52.058 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:52.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:06:52.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:06:52.128 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:52.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36610 150' command took 2 ms to send, 1390 ms to get response, and 1394 ms overall
17-03-17 22:06:52.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:52.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166789678432492. ------
17-03-17 22:06:52.128 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:52.128 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17316 mm
17-03-17 22:06:52.128 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:52.128 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:06:52.128 -07 000000438 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:06:52.128 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37826, sync = True, waitForSettling = False)
17-03-17 22:06:52.128 -07 000000547 INF: Z Motor: Moving to -0.173156 mm, started at -0.166790 mm, distance = -6.37 um
17-03-17 22:06:52.128 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:52.138 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:06:52.138 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:52.138 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:06:52.148 -07 000000547 INF: FPGA: Xmit ZDACW 37826\n [Z Motor]
17-03-17 22:06:52.148 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:06:52.148 -07 000000438 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:52.148 -07 000000438 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:52.148 -07 000000438 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:06:52.148 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:06:52.158 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:52.158 -07 000000547 INF: FPGA: 'ZDACW 37826' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 22:06:52.168 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:52.178 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:52.178 -07 000000462 INF: FPGA: Recv ZDACR 37826
17-03-17 22:06:52.188 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:52.188 -07 000000547 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 22:06:52.358 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:52.358 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:06:52.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 22:06:52.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:06:52.448 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:52.458 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:52.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:06:52.458 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:06:52.458 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:52.468 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:52.468 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-17 22:06:52.468 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 22:06:52.538 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 22:06:52.538 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 22:06:52.578 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:52.578 -07 000000462 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:06:52.588 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:52.588 -07 000000438 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:52.588 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:06:52.588 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.846 mm, average velocity = 2.121 mm/sec
17-03-17 22:06:53.538 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:53.538 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:06:53.548 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:53.548 -07 000000438 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:53.558 -07 000000438 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:53.558 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:53.558 -07 000000438 INF: Y Motor: Moved to 74.0083 after 1430 ms (table move)
17-03-17 22:06:53.568 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173156 mm (DAC = 37826)
17-03-17 22:06:53.568 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.568 -07 000000438 INF: FPGA: Recv ZSGSRD 36248
17-03-17 22:06:53.578 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:53.578 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36252
17-03-17 22:06:53.588 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.588 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.588 -07 000000475 INF: FPGA: Recv ZSGSRD 36239
17-03-17 22:06:53.598 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.598 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.598 -07 000000475 INF: FPGA: Recv ZSGSRD 36247
17-03-17 22:06:53.608 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.608 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.608 -07 000000475 INF: FPGA: Recv ZSGSRD 36243
17-03-17 22:06:53.618 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.618 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36245
17-03-17 22:06:53.628 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.628 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.628 -07 000000475 INF: FPGA: Recv ZSGSRD 36243
17-03-17 22:06:53.638 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36245
17-03-17 22:06:53.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.648 -07 000000547 INF: FPGA: Recv ZSGSRD 36245
17-03-17 22:06:53.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:53.658 -07 000000486 INF: FPGA: Recv ZSGSRD 36249
17-03-17 22:06:53.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.668 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:53.668 -07 000000486 INF: FPGA: Recv ZPIEZORD 32504
17-03-17 22:06:53.678 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:53.678 -07 000000623 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.3 V.
17-03-17 22:06:53.678 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36246 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36245 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36239 (-172.2 uncal um), Max = 36252 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:06:53.678 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36246, posNoise = 6, negNoise = 7
17-03-17 22:06:53.678 -07 000000623 INF: Z Motor: After move to -0.173156, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:53.678 -07 000000623 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:06:53.678 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:53.718 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:06:53.718 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:53.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:53.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:53.718 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:53.718 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:53.718 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:53.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:53.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:53.718 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:53.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:53.728 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:53.738 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:06:53.738 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:06:53.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:53.788 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:53.988 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:53.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:53.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:53.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 22:06:54.018 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:54.028 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:54.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 22:06:54.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:06:54.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:54.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:06:54.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:06:54.128 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:54.128 -07 000000551 INF: Autofocus start
17-03-17 22:06:54.128 -07 000000551 INF: MeasureProfile start
17-03-17 22:06:54.128 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:54.138 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:06:54.138 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:54.138 -07 000000551 INF: MeasureProfile done
17-03-17 22:06:54.138 -07 000000551 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 22:06:54.138 -07 000000551 INF: Autofocus finished
17-03-17 22:06:54.338 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:54.338 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:06:54.338 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173175345301403. ----------
17-03-17 22:06:54.338 -07 000000610 INF: Cycle	59	Tile	18	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:54.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36306, sync = True, waitForSettling = True)
17-03-17 22:06:54.348 -07 000000610 INF: Z Motor: Moving to -0.166198 mm, started at -0.173175 mm, distance = 6.98 um
17-03-17 22:06:54.348 -07 000000610 INF: FPGA: Xmit ZDACW 36306\n [Z Motor]
17-03-17 22:06:54.348 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:06:54.358 -07 000000610 INF: FPGA: 'ZDACW 36306' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:54.358 -07 000000561 INF: FPGA: Recv ZDACR 36306
17-03-17 22:06:54.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.518 -07 000000623 INF: FPGA: Recv ZSGSRD 35165
17-03-17 22:06:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:54.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35162
17-03-17 22:06:54.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:54.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35156
17-03-17 22:06:54.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.548 -07 000000623 INF: FPGA: Recv ZSGSRD 35165
17-03-17 22:06:54.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.558 -07 000000561 INF: FPGA: Recv ZSGSRD 35166
17-03-17 22:06:54.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.568 -07 000000623 INF: FPGA: Recv ZSGSRD 35162
17-03-17 22:06:54.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.578 -07 000000623 INF: FPGA: Recv ZSGSRD 35160
17-03-17 22:06:54.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.588 -07 000000623 INF: FPGA: Recv ZSGSRD 35163
17-03-17 22:06:54.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.598 -07 000000561 INF: FPGA: Recv ZSGSRD 35165
17-03-17 22:06:54.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:54.608 -07 000000623 INF: FPGA: Recv ZSGSRD 35157
17-03-17 22:06:54.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:54.618 -07 000000623 INF: FPGA: Recv ZPIEZORD 31073
17-03-17 22:06:54.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:54.628 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.0 V.
17-03-17 22:06:54.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35162 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35162 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35156 (-165.3 uncal um), Max = 35166 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:06:54.628 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35162, posNoise = 4, negNoise = 6
17-03-17 22:06:54.628 -07 000000610 INF: Z Motor: After move to -0.166198, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:54.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:06:54.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:54.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:54.628 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:54.628 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:54.628 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:54.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:54.628 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:54.628 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:54.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:54.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:54.628 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:54.628 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:54.638 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:06:54.638 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:54.638 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:06:54.638 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:54.648 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:06:54.648 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:06:54.648 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:06:54.648 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:06:54.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36483 150\n [Camera]
17-03-17 22:06:54.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:55.298 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 640
17-03-17 22:06:55.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 640
17-03-17 22:06:55.298 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:55.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 640
17-03-17 22:06:55.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 640
17-03-17 22:06:55.298 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:55.298 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:55.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) start.
17-03-17 22:06:55.298 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:55.298 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:06:55.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:06:55.678 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 22:06:55.678 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:55.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:06:55.678 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:06:55.678 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:55.688 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:06:55.688 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:06:55.688 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 22:06:55.698 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:06:55.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36483 830
17-03-17 22:06:55.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:06:55.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:06:55.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:06:55.848 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:55.848 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:55.848 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 22:06:55.848 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:06:55.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:06:55.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:55.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:55.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:06:56.008 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.999021,
17-03-17 22:06:56.038 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:06:56.038 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:06:56.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36483 150' command took 2 ms to send, 1388 ms to get response, and 1393 ms overall
17-03-17 22:06:56.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 22:06:56.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166211499339734. ------
17-03-17 22:06:56.048 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17268 mm
17-03-17 22:06:56.048 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:06:56.048 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:56.048 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:56.048 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37722, sync = True, waitForSettling = False)
17-03-17 22:06:56.048 -07 000000551 INF: Z Motor: Moving to -0.172680 mm, started at -0.166211 mm, distance = -6.47 um
17-03-17 22:06:56.058 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:06:56.058 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:06:56.058 -07 000000475 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:06:56.058 -07 000000551 INF: FPGA: Xmit ZDACW 37722\n [Z Motor]
17-03-17 22:06:56.058 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 22:06:56.068 -07 000000551 INF: FPGA: 'ZDACW 37722' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:56.068 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:56.068 -07 000000623 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:06:56.078 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:06:56.078 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:06:56.078 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:56.078 -07 000000475 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:06:56.078 -07 000000475 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:06:56.088 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:56.088 -07 000000438 INF: FPGA: Recv ZDACR 37722
17-03-17 22:06:56.098 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:06:56.098 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:06:56.098 -07 000000551 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:06:56.228 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:06:56.238 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:06:56.238 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:56.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:06:56.238 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:06:56.238 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:56.238 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:06:56.238 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:06:56.238 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 22:06:56.248 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:06:56.278 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:06:56.278 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 22:06:56.468 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:06:56.468 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 22:06:56.498 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:56.498 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-17 22:06:56.508 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:06:56.508 -07 000000475 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:56.508 -07 000000475 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 22:06:56.508 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 22:06:56.938 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:06:56.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:06:57.458 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:06:57.458 -07 000000561 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:06:57.468 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:57.468 -07 000000475 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:06:57.478 -07 000000475 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:06:57.478 -07 000000475 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:06:57.478 -07 000000475 INF: Y Motor: Moved to 74.8325 after 1426 ms (table move)
17-03-17 22:06:57.478 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172680 mm (DAC = 37722)
17-03-17 22:06:57.488 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.488 -07 000000424 INF: FPGA: Recv ZSGSRD 36177
17-03-17 22:06:57.498 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:57.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.498 -07 000000475 INF: FPGA: Recv ZSGSRD 36172
17-03-17 22:06:57.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.508 -07 000000475 INF: FPGA: Recv ZSGSRD 36164
17-03-17 22:06:57.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.518 -07 000000475 INF: FPGA: Recv ZSGSRD 36162
17-03-17 22:06:57.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.528 -07 000000623 INF: FPGA: Recv ZSGSRD 36171
17-03-17 22:06:57.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.538 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.538 -07 000000438 INF: FPGA: Recv ZSGSRD 36174
17-03-17 22:06:57.548 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.548 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.548 -07 000000438 INF: FPGA: Recv ZSGSRD 36177
17-03-17 22:06:57.558 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.558 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.558 -07 000000438 INF: FPGA: Recv ZSGSRD 36169
17-03-17 22:06:57.568 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.568 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.568 -07 000000438 INF: FPGA: Recv ZSGSRD 36171
17-03-17 22:06:57.578 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.578 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:57.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36178
17-03-17 22:06:57.588 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.588 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:57.588 -07 000000433 INF: FPGA: Recv ZPIEZORD 32452
17-03-17 22:06:57.598 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:57.598 -07 000000476 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.2 V.
17-03-17 22:06:57.598 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36172 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36162 (-171.8 uncal um), Max = 36178 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:06:57.598 -07 000000476 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36172, posNoise = 6, negNoise = 10
17-03-17 22:06:57.598 -07 000000476 INF: Z Motor: After move to -0.172680, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:57.598 -07 000000476 INF: Z Motor: Settle wait time = 1431 ms, measure time = 110 ms (allowed 150 ms), total time = 1541 ms
17-03-17 22:06:57.598 -07 000000476 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:06:57.638 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 22:06:57.638 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:06:57.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:57.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:57.638 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:57.638 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:57.638 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:06:57.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:57.638 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:57.638 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:06:57.648 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:57.648 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:06:57.658 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:06:57.658 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:06:57.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:06:57.708 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:06:57.908 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:06:57.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:06:57.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:06:58.018 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:06:58.018 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:06:58.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 354 ms to get response, and 357 ms overall
17-03-17 22:06:58.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1498170696, 0x0, 559484976) start.
17-03-17 22:06:58.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1498170696, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 22:06:58.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:06:58.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:06:58.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 233 ms.
17-03-17 22:06:58.218 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:06:58.728 -07 000000547 INF: Autofocus start
17-03-17 22:06:58.728 -07 000000547 INF: MeasureProfile start
17-03-17 22:06:58.738 -07 000000547 INF: MeasureProfile done
17-03-17 22:06:58.738 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 22:06:58.738 -07 000000547 INF: Autofocus finished
17-03-17 22:06:58.738 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:06:58.738 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 515 ms to get response, and 522 ms overall
17-03-17 22:06:58.738 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:06:58.948 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:06:58.948 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 22:06:58.948 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172699953602912. ----------
17-03-17 22:06:58.948 -07 000000610 INF: Cycle	59	Tile	19	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:06:58.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36219, sync = True, waitForSettling = True)
17-03-17 22:06:58.948 -07 000000610 INF: Z Motor: Moving to -0.165800 mm, started at -0.172700 mm, distance = 6.90 um
17-03-17 22:06:58.948 -07 000000610 INF: FPGA: Xmit ZDACW 36219\n [Z Motor]
17-03-17 22:06:58.958 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:06:58.958 -07 000000610 INF: FPGA: 'ZDACW 36219' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:06:58.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:06:58.958 -07 000000480 INF: FPGA: Recv ZDACR 36219
17-03-17 22:06:58.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:58.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:06:59.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35100
17-03-17 22:06:59.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:06:59.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.128 -07 000000480 INF: FPGA: Recv ZSGSRD 35108
17-03-17 22:06:59.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.138 -07 000000480 INF: FPGA: Recv ZSGSRD 35093
17-03-17 22:06:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.148 -07 000000547 INF: FPGA: Recv ZSGSRD 35101
17-03-17 22:06:59.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.158 -07 000000480 INF: FPGA: Recv ZSGSRD 35098
17-03-17 22:06:59.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.168 -07 000000547 INF: FPGA: Recv ZSGSRD 35103
17-03-17 22:06:59.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.178 -07 000000480 INF: FPGA: Recv ZSGSRD 35092
17-03-17 22:06:59.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.188 -07 000000480 INF: FPGA: Recv ZSGSRD 35098
17-03-17 22:06:59.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.198 -07 000000547 INF: FPGA: Recv ZSGSRD 35102
17-03-17 22:06:59.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:06:59.208 -07 000000547 INF: FPGA: Recv ZSGSRD 35100
17-03-17 22:06:59.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:06:59.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:06:59.218 -07 000000576 INF: FPGA: Recv ZPIEZORD 31009
17-03-17 22:06:59.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:06:59.228 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.0 V.
17-03-17 22:06:59.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35100 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35100 (-164.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35092 (-164.9 uncal um), Max = 35108 (-165.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 22:06:59.228 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35100, posNoise = 8, negNoise = 8
17-03-17 22:06:59.228 -07 000000610 INF: Z Motor: After move to -0.165800, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:06:59.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 22:06:59.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:06:59.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:06:59.228 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:06:59.228 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:06:59.228 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:06:59.228 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:06:59.228 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:06:59.228 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:06:59.228 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:06:59.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:06:59.228 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:06:59.228 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:06:59.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:06:59.228 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:06:59.228 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:06:59.238 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:06:59.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:06:59.238 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:06:59.238 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:06:59.238 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:06:59.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 36396 150\n [Camera]
17-03-17 22:06:59.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:06:59.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:06:59.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:06:59.888 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:06:59.898 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:06:59.898 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 22:06:59.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:06:59.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:06:59.898 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:06:59.898 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:06:59.898 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:07:00.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36396 830
17-03-17 22:07:00.228 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:00.288 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 22:07:00.288 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:07:00.288 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:00.298 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:00.298 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:07:00.298 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:07:00.298 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:07:00.298 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:00.298 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:00.308 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:07:00.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:00.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:00.448 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:00.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:00.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:00.448 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:00.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:00.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:00.568 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:00.568 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:00.638 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:07:00.638 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:00.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 36396 150' command took 4 ms to send, 1385 ms to get response, and 1394 ms overall
17-03-17 22:07:00.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:07:00.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:07:00.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:00.968 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:07:00.968 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:07:00.968 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:00.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:00.978 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:00.978 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-17 22:07:00.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:07:00.978 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 22:07:01.018 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:07:01.018 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:07:01.058 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:07:01.058 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 22:07:01.058 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 22:07:01.068 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-17 22:07:01.068 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:07:01.068 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 22:07:01.368 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.011254,
17-03-17 22:07:01.568 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 22:07:01.568 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 22:07:01.568 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 22:07:01.568 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 22:07:01.578 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:01.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:01.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165813198186945. ------
17-03-17 22:07:01.578 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:01.578 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14045 mm
17-03-17 22:07:01.578 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:01.588 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 22:07:01.588 -07 000000486 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 22:07:01.588 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:01.588 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:01.588 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:01.588 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30682, sync = True, waitForSettling = False)
17-03-17 22:07:01.588 -07 000000547 INF: Z Motor: Moving to -0.140453 mm, started at -0.165813 mm, distance = 25.36 um
17-03-17 22:07:01.588 -07 000000623 INF: FPGA: Recv YRDPOS 153258
17-03-17 22:07:01.598 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:01.598 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:01.598 -07 000000486 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:01.598 -07 000000486 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 22:07:01.598 -07 000000486 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 22:07:01.608 -07 000000547 INF: FPGA: Xmit ZDACW 30682\n [Z Motor]
17-03-17 22:07:01.608 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 22:07:01.618 -07 000000486 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 22:07:01.618 -07 000000547 INF: FPGA: 'ZDACW 30682' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:01.628 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:01.628 -07 000000561 INF: FPGA: Recv ZDACR 30682
17-03-17 22:07:01.638 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:07:01.638 -07 000000547 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 22:07:01.798 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:01.798 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 22:07:01.938 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:01.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:03.238 -07 000000480 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 22:07:03.238 -07 000000486 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 22:07:03.238 -07 000000486 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 22:07:03.238 -07 000000486 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 22:07:03.238 -07 000000486 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 22:07:06.088 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:06.088 -07 000000480 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:07:06.098 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.098 -07 000000486 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:06.128 -07 000000486 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:06.128 -07 000000486 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 22:07:06.128 -07 000000486 INF: Y Motor: Moved to 59.9111 after 4541 ms
17-03-17 22:07:06.128 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140453 mm (DAC = 30682)
17-03-17 22:07:06.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.128 -07 000000561 INF: FPGA: Recv ZSGSRD 31160
17-03-17 22:07:06.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:06.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.138 -07 000000462 INF: FPGA: Recv ZSGSRD 31154
17-03-17 22:07:06.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.148 -07 000000486 INF: FPGA: Recv ZSGSRD 31153
17-03-17 22:07:06.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.158 -07 000000462 INF: FPGA: Recv ZSGSRD 31150
17-03-17 22:07:06.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.168 -07 000000486 INF: FPGA: Recv ZSGSRD 31156
17-03-17 22:07:06.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.178 -07 000000448 INF: FPGA: Recv ZSGSRD 31155
17-03-17 22:07:06.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.188 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.188 -07 000000561 INF: FPGA: Recv ZSGSRD 31155
17-03-17 22:07:06.198 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.198 -07 000000623 INF: FPGA: Recv ZSGSRD 31157
17-03-17 22:07:06.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.208 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.208 -07 000000433 INF: FPGA: Recv ZSGSRD 31150
17-03-17 22:07:06.218 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:06.218 -07 000000448 INF: FPGA: Recv ZSGSRD 31155
17-03-17 22:07:06.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.228 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:06.228 -07 000000480 INF: FPGA: Recv ZPIEZORD 26855
17-03-17 22:07:06.238 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:06.238 -07 000000438 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.682 V. Piezo Error = -9.4 V.
17-03-17 22:07:06.238 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31154 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31155 (-139.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31150 (-139.6 uncal um), Max = 31160 (-139.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:06.238 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31154, posNoise = 6, negNoise = 4
17-03-17 22:07:06.238 -07 000000438 INF: Z Motor: After move to -0.140453, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:06.238 -07 000000438 INF: Z Motor: Settle wait time = 4544 ms, measure time = 105 ms (allowed 150 ms), total time = 4649 ms
17-03-17 22:07:06.238 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:06.288 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4702 ms
17-03-17 22:07:06.288 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:06.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:06.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:06.288 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:06.288 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:06.288 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:06.288 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:06.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:06.298 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 22:07:06.318 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 22:07:06.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:06.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:07:06.318 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:06.338 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:07:06.338 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 22:07:06.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:06.378 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:06.578 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:06.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:06.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:06.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 22:07:06.618 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:06.618 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:06.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:07:06.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:07:06.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:06.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:06.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:07:06.728 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.994908,
17-03-17 22:07:06.818 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:06.818 -07 000000438 INF: Image SNR check: start
17-03-17 22:07:06.818 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:06.828 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:06.828 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:06.838 -07 000000438 INF: Image SNR check: pass  [peak (Max-Min)=56.35]
17-03-17 22:07:06.838 -07 000000438 INF: Autofocus start
17-03-17 22:07:06.838 -07 000000438 INF: MeasureProfile start
17-03-17 22:07:06.848 -07 000000438 INF: MeasureProfile done
17-03-17 22:07:06.848 -07 000000438 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 22:07:06.848 -07 000000438 INF: Autofocus finished
17-03-17 22:07:06.938 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:06.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:07.028 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:07.028 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:07.028 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140463257075556. ----------
17-03-17 22:07:07.028 -07 000000610 INF: Cycle	59	Tile	1	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:07.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29160, sync = True, waitForSettling = True)
17-03-17 22:07:07.038 -07 000000610 INF: Z Motor: Moving to -0.133486 mm, started at -0.140463 mm, distance = 6.98 um
17-03-17 22:07:07.038 -07 000000610 INF: FPGA: Xmit ZDACW 29160\n [Z Motor]
17-03-17 22:07:07.038 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:07:07.048 -07 000000610 INF: FPGA: 'ZDACW 29160' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:07.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:07.048 -07 000000480 INF: FPGA: Recv ZDACR 29160
17-03-17 22:07:07.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.208 -07 000000486 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:07:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.218 -07 000000438 INF: FPGA: Recv ZSGSRD 30064
17-03-17 22:07:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.228 -07 000000433 INF: FPGA: Recv ZSGSRD 30068
17-03-17 22:07:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.238 -07 000000623 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:07:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.248 -07 000000486 INF: FPGA: Recv ZSGSRD 30068
17-03-17 22:07:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.258 -07 000000438 INF: FPGA: Recv ZSGSRD 30070
17-03-17 22:07:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.268 -07 000000448 INF: FPGA: Recv ZSGSRD 30067
17-03-17 22:07:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30071
17-03-17 22:07:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30069
17-03-17 22:07:07.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:07.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30065
17-03-17 22:07:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:07.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:07.308 -07 000000438 INF: FPGA: Recv ZPIEZORD 25713
17-03-17 22:07:07.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:07.318 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.6 V.
17-03-17 22:07:07.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30068 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30068 (-132.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30064 (-132.7 uncal um), Max = 30071 (-132.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:07.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30068, posNoise = 3, negNoise = 4
17-03-17 22:07:07.318 -07 000000610 INF: Z Motor: After move to -0.133486, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:07.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 22:07:07.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:07.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:07.318 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:07.318 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:07.318 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:07.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:07.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:07.318 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:07.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:07.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:07.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:07.318 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 22:07:07.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:07.318 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:07.328 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:07:07.328 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:07:07.338 -07 000000486 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 22:07:07.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:07.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:07:07.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:07.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:07:07.348 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 22:07:07.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29337 150\n [Camera]
17-03-17 22:07:07.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:07.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:07.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:07.998 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:07.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:07.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:08.008 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:08.008 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:08.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:08.008 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:08.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:08.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29337 830
17-03-17 22:07:08.338 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:08.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 22:07:08.378 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 22:07:08.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:07:08.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:08.378 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 22:07:08.378 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:08.388 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:08.388 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:08.388 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 22:07:08.388 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:07:08.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:08.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:08.558 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:08.558 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:08.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 22:07:08.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:08.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:08.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:08.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:08.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 22:07:08.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:07:08.748 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:08.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29337 150' command took 2 ms to send, 1385 ms to get response, and 1393 ms overall
17-03-17 22:07:08.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:08.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133486562689603. ------
17-03-17 22:07:08.758 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:08.758 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13988 mm
17-03-17 22:07:08.758 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:08.758 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 22:07:08.758 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 22:07:08.758 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:08.758 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30556, sync = True, waitForSettling = False)
17-03-17 22:07:08.758 -07 000000448 INF: Z Motor: Moving to -0.139876 mm, started at -0.133487 mm, distance = -6.39 um
17-03-17 22:07:08.768 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:08.768 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:08.768 -07 000000512 INF: FPGA: Recv YRDPOS 122698
17-03-17 22:07:08.778 -07 000000448 INF: FPGA: Xmit ZDACW 30556\n [Z Motor]
17-03-17 22:07:08.778 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:07:08.778 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:08.778 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:08.778 -07 000000438 INF: Y Motor: Moving 1330 steps2
17-03-17 22:07:08.778 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:07:08.788 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:08.788 -07 000000448 INF: FPGA: 'ZDACW 30556' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 22:07:08.798 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:08.808 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:08.808 -07 000000476 INF: FPGA: Recv ZDACR 30556
17-03-17 22:07:08.818 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:08.818 -07 000000448 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:07:08.948 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:07:08.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:07:08.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:07:08.958 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:08.958 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:07:08.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:08.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:08.958 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 22:07:08.958 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:07:08.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 22:07:08.988 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:08.988 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:07:09.168 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 22:07:09.168 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 22:07:09.208 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:09.208 -07 000000475 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:07:09.218 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:09.218 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:09.218 -07 000000438 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 22:07:09.218 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 22:07:10.168 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:10.168 -07 000000462 INF: FPGA: Recv YRDPOS 124381
17-03-17 22:07:10.178 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:10.178 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:10.198 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:10.198 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:10.198 -07 000000438 INF: Y Motor: Moved to 60.7329 after 1440 ms (table move)
17-03-17 22:07:10.198 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139876 mm (DAC = 30556)
17-03-17 22:07:10.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.208 -07 000000438 INF: FPGA: Recv ZSGSRD 31072
17-03-17 22:07:10.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 22:07:10.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.208 -07 000000475 INF: FPGA: Recv ZSGSRD 31068
17-03-17 22:07:10.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:10.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.218 -07 000000475 INF: FPGA: Recv ZSGSRD 31064
17-03-17 22:07:10.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.228 -07 000000438 INF: FPGA: Recv ZSGSRD 31074
17-03-17 22:07:10.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.238 -07 000000475 INF: FPGA: Recv ZSGSRD 31062
17-03-17 22:07:10.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.248 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.248 -07 000000438 INF: FPGA: Recv ZSGSRD 31057
17-03-17 22:07:10.258 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.258 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.258 -07 000000438 INF: FPGA: Recv ZSGSRD 31067
17-03-17 22:07:10.268 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.268 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.268 -07 000000438 INF: FPGA: Recv ZSGSRD 31061
17-03-17 22:07:10.278 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.278 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.278 -07 000000438 INF: FPGA: Recv ZSGSRD 31066
17-03-17 22:07:10.288 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.288 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:10.288 -07 000000438 INF: FPGA: Recv ZSGSRD 31066
17-03-17 22:07:10.298 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.298 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:10.298 -07 000000438 INF: FPGA: Recv ZPIEZORD 27044
17-03-17 22:07:10.308 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:10.308 -07 000000480 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -8.9 V.
17-03-17 22:07:10.308 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31066 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31066 (-139.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31057 (-139.0 uncal um), Max = 31074 (-139.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:07:10.308 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31066, posNoise = 8, negNoise = 9
17-03-17 22:07:10.308 -07 000000480 INF: Z Motor: After move to -0.139876, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:10.308 -07 000000480 INF: Z Motor: Settle wait time = 1442 ms, measure time = 101 ms (allowed 150 ms), total time = 1543 ms
17-03-17 22:07:10.308 -07 000000480 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:10.358 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:07:10.358 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:10.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:10.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:10.358 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:10.358 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:10.358 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:10.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:10.358 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:10.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:10.368 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:10.368 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:10.378 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:07:10.378 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:07:10.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:10.418 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:10.618 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:10.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:10.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:10.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2252082448, 0x0, 559484976) start.
17-03-17 22:07:10.658 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:10.658 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:10.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 22:07:10.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2252082448, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:07:10.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:10.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:10.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:07:10.858 -07 000000623 INF: Autofocus start
17-03-17 22:07:10.858 -07 000000623 INF: MeasureProfile start
17-03-17 22:07:10.858 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:10.858 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:10.868 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:07:10.868 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:10.868 -07 000000623 INF: MeasureProfile done
17-03-17 22:07:10.868 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:07:10.868 -07 000000623 INF: Autofocus finished
17-03-17 22:07:11.068 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:11.068 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:11.068 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139897926407081. ----------
17-03-17 22:07:11.068 -07 000000610 INF: Cycle	59	Tile	2	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:11.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29063, sync = True, waitForSettling = True)
17-03-17 22:07:11.078 -07 000000610 INF: Z Motor: Moving to -0.133042 mm, started at -0.139898 mm, distance = 6.86 um
17-03-17 22:07:11.078 -07 000000610 INF: FPGA: Xmit ZDACW 29063\n [Z Motor]
17-03-17 22:07:11.078 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:07:11.088 -07 000000610 INF: FPGA: 'ZDACW 29063' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:11.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:11.088 -07 000000486 INF: FPGA: Recv ZDACR 29063
17-03-17 22:07:11.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:11.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.248 -07 000000438 INF: FPGA: Recv ZSGSRD 29997
17-03-17 22:07:11.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:11.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.258 -07 000000486 INF: FPGA: Recv ZSGSRD 29999
17-03-17 22:07:11.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.268 -07 000000448 INF: FPGA: Recv ZSGSRD 29999
17-03-17 22:07:11.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29997
17-03-17 22:07:11.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.288 -07 000000438 INF: FPGA: Recv ZSGSRD 30002
17-03-17 22:07:11.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29992
17-03-17 22:07:11.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.308 -07 000000438 INF: FPGA: Recv ZSGSRD 29999
17-03-17 22:07:11.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30007
17-03-17 22:07:11.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.328 -07 000000448 INF: FPGA: Recv ZSGSRD 29998
17-03-17 22:07:11.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:11.338 -07 000000623 INF: FPGA: Recv ZSGSRD 30001
17-03-17 22:07:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:11.348 -07 000000476 INF: FPGA: Recv ZPIEZORD 25677
17-03-17 22:07:11.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:11.358 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.435 V. Piezo Error = -9.5 V.
17-03-17 22:07:11.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29999 (-132.3 uncal um), Error = 0.8 uncal um, Median = 29999 (-132.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29992 (-132.2 uncal um), Max = 30007 (-132.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:07:11.358 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29999, posNoise = 8, negNoise = 7
17-03-17 22:07:11.358 -07 000000610 INF: Z Motor: After move to -0.133042, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:11.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:07:11.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:11.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:11.358 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:11.358 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:11.358 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:11.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:11.358 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:11.358 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:11.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:11.358 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:11.358 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:11.358 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:11.368 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:11.368 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:11.368 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:11.368 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:11.378 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:07:11.378 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:07:11.378 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 22:07:11.378 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 22:07:11.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29240 150\n [Camera]
17-03-17 22:07:11.578 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:11.938 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:11.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:12.028 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:12.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:12.028 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:12.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:12.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 22:07:12.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:12.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:12.028 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:12.028 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:12.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 22:07:12.088 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.971733,
17-03-17 22:07:12.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29240 830
17-03-17 22:07:12.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:12.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:07:12.428 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:07:12.428 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:12.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:07:12.428 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:07:12.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:12.428 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:07:12.428 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:07:12.428 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:12.438 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 22:07:12.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1197
17-03-17 22:07:12.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1197
17-03-17 22:07:12.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:12.588 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:12.588 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 22:07:12.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1197
17-03-17 22:07:12.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1197
17-03-17 22:07:12.588 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:12.588 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:12.588 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 22:07:12.768 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:07:12.778 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:12.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29240 150' command took 2 ms to send, 1390 ms to get response, and 1393 ms overall
17-03-17 22:07:12.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:12.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133043292051822. ------
17-03-17 22:07:12.778 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:12.778 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13957 mm
17-03-17 22:07:12.778 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:12.778 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:12.778 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30490, sync = True, waitForSettling = False)
17-03-17 22:07:12.778 -07 000000486 INF: Z Motor: Moving to -0.139574 mm, started at -0.133043 mm, distance = -6.53 um
17-03-17 22:07:12.788 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:12.788 -07 000000486 INF: FPGA: Xmit ZDACW 30490\n [Z Motor]
17-03-17 22:07:12.788 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 22:07:12.788 -07 000000551 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 22:07:12.788 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:07:12.798 -07 000000486 INF: FPGA: 'ZDACW 30490' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:12.798 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:12.808 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:12.808 -07 000000547 INF: FPGA: Recv YRDPOS 124382
17-03-17 22:07:12.818 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:12.818 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:12.818 -07 000000551 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:12.818 -07 000000561 INF: FPGA: Recv ZDACR 30490
17-03-17 22:07:12.818 -07 000000551 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:12.818 -07 000000551 INF: Y Motor: Moving 1343 steps-20
17-03-17 22:07:12.828 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:12.828 -07 000000486 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 22:07:12.828 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:12.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:07:12.988 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:07:12.988 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:12.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 22:07:12.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 22:07:12.988 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:12.988 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:12.998 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:07:12.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 22:07:12.998 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:12.998 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-17 22:07:12.998 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 22:07:13.198 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:07:13.198 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 22:07:13.238 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:13.248 -07 000000382 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:07:13.248 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:13.248 -07 000000551 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:13.248 -07 000000551 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 22:07:13.248 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.192 mm/sec
17-03-17 22:07:14.198 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:14.198 -07 000000438 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:07:14.208 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:14.208 -07 000000551 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:14.228 -07 000000551 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:14.228 -07 000000551 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:14.228 -07 000000551 INF: Y Motor: Moved to 61.5640 after 1443 ms (table move)
17-03-17 22:07:14.228 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139574 mm (DAC = 30490)
17-03-17 22:07:14.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.238 -07 000000480 INF: FPGA: Recv ZSGSRD 31023
17-03-17 22:07:14.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:07:14.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.238 -07 000000551 INF: FPGA: Recv ZSGSRD 31022
17-03-17 22:07:14.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:14.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.248 -07 000000561 INF: FPGA: Recv ZSGSRD 31020
17-03-17 22:07:14.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.258 -07 000000448 INF: FPGA: Recv ZSGSRD 31017
17-03-17 22:07:14.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.268 -07 000000462 INF: FPGA: Recv ZSGSRD 31020
17-03-17 22:07:14.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.278 -07 000000547 INF: FPGA: Recv ZSGSRD 31019
17-03-17 22:07:14.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.288 -07 000000462 INF: FPGA: Recv ZSGSRD 31015
17-03-17 22:07:14.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.298 -07 000000551 INF: FPGA: Recv ZSGSRD 31018
17-03-17 22:07:14.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.308 -07 000000448 INF: FPGA: Recv ZSGSRD 31012
17-03-17 22:07:14.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:14.318 -07 000000480 INF: FPGA: Recv ZSGSRD 31016
17-03-17 22:07:14.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.328 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:14.328 -07 000000462 INF: FPGA: Recv ZPIEZORD 27044
17-03-17 22:07:14.338 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:14.338 -07 000000433 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.652 V. Piezo Error = -8.8 V.
17-03-17 22:07:14.338 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31018 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31018 (-138.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31012 (-138.7 uncal um), Max = 31023 (-138.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:14.338 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31018, posNoise = 5, negNoise = 6
17-03-17 22:07:14.338 -07 000000433 INF: Z Motor: After move to -0.139574, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:14.338 -07 000000433 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 22:07:14.338 -07 000000433 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:14.388 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:07:14.388 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:14.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:14.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:14.388 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:14.388 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:14.388 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:14.388 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:14.388 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:14.388 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:14.398 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:14.398 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:14.408 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:07:14.408 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:07:14.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:14.448 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:14.648 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:14.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:14.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:14.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) start.
17-03-17 22:07:14.688 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:14.688 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:14.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:07:14.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 22:07:14.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:14.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:14.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 22:07:14.888 -07 000000438 INF: Autofocus start
17-03-17 22:07:14.888 -07 000000438 INF: MeasureProfile start
17-03-17 22:07:14.888 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:14.888 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:14.898 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:14.898 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:14.898 -07 000000438 INF: MeasureProfile done
17-03-17 22:07:14.898 -07 000000438 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:07:14.898 -07 000000438 INF: Autofocus finished
17-03-17 22:07:15.098 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:15.098 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 22:07:15.108 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139589564224276. ----------
17-03-17 22:07:15.108 -07 000000610 INF: Cycle	59	Tile	3	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:15.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29014, sync = True, waitForSettling = True)
17-03-17 22:07:15.108 -07 000000610 INF: Z Motor: Moving to -0.132818 mm, started at -0.139590 mm, distance = 6.77 um
17-03-17 22:07:15.108 -07 000000610 INF: FPGA: Xmit ZDACW 29014\n [Z Motor]
17-03-17 22:07:15.108 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:07:15.118 -07 000000610 INF: FPGA: 'ZDACW 29014' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:07:15.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:15.138 -07 000000448 INF: FPGA: Recv ZDACR 29014
17-03-17 22:07:15.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:15.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:15.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.298 -07 000000576 INF: FPGA: Recv ZSGSRD 29965
17-03-17 22:07:15.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:15.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.308 -07 000000382 INF: FPGA: Recv ZSGSRD 29968
17-03-17 22:07:15.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.318 -07 000000547 INF: FPGA: Recv ZSGSRD 29963
17-03-17 22:07:15.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29969
17-03-17 22:07:15.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.338 -07 000000438 INF: FPGA: Recv ZSGSRD 29966
17-03-17 22:07:15.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.348 -07 000000448 INF: FPGA: Recv ZSGSRD 29961
17-03-17 22:07:15.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.358 -07 000000462 INF: FPGA: Recv ZSGSRD 29972
17-03-17 22:07:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.368 -07 000000623 INF: FPGA: Recv ZSGSRD 29961
17-03-17 22:07:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.378 -07 000000623 INF: FPGA: Recv ZSGSRD 29962
17-03-17 22:07:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:15.388 -07 000000448 INF: FPGA: Recv ZSGSRD 29967
17-03-17 22:07:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:15.398 -07 000000623 INF: FPGA: Recv ZPIEZORD 25644
17-03-17 22:07:15.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:15.408 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.427 V. Piezo Error = -9.5 V.
17-03-17 22:07:15.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29965 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29966 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29961 (-132.0 uncal um), Max = 29972 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:15.408 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29965, posNoise = 7, negNoise = 4
17-03-17 22:07:15.408 -07 000000610 INF: Z Motor: After move to -0.132818, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:15.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 22:07:15.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:15.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:15.408 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:15.408 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:15.408 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:15.408 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:15.408 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:07:15.408 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:15.408 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:15.408 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:15.418 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:15.418 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:15.418 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:15.418 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:15.418 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:15.418 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:15.428 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:07:15.428 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:07:15.428 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:07:15.428 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:07:15.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29191 150\n [Camera]
17-03-17 22:07:15.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:16.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:16.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:16.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:16.078 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:16.078 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:16.078 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 22:07:16.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:16.078 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:16.078 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:16.078 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 22:07:16.268 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29191 830
17-03-17 22:07:16.418 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:16.458 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:07:16.458 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:07:16.458 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:16.458 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:07:16.458 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:07:16.458 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:16.458 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:16.458 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 22:07:16.458 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:16.468 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 22:07:16.628 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:16.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:16.628 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:16.628 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:16.628 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 22:07:16.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:16.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:16.638 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:16.638 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:16.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 22:07:16.818 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:16.818 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:16.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29191 150' command took 2 ms to send, 1389 ms to get response, and 1394 ms overall
17-03-17 22:07:16.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:16.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132824868839002. ------
17-03-17 22:07:16.828 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:16.828 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13918 mm
17-03-17 22:07:16.828 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:17.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:07:17.028 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:07:17.028 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:17.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:07:17.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:07:17.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:17.028 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:17.038 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:07:17.038 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:07:17.038 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:07:17.048 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:17.048 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:17.048 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 211 ms to get response, and 217 ms overall
17-03-17 22:07:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:17.048 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:17.048 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 22:07:17.048 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 22:07:17.048 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30405, sync = True, waitForSettling = False)
17-03-17 22:07:17.048 -07 000000462 INF: Z Motor: Moving to -0.139185 mm, started at -0.132825 mm, distance = -6.36 um
17-03-17 22:07:17.058 -07 000000462 INF: FPGA: Xmit ZDACW 30405\n [Z Motor]
17-03-17 22:07:17.068 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:17.728 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:07:17.728 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-17 22:07:17.728 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:17.728 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 671 ms to get response, and 678 ms overall
17-03-17 22:07:17.728 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 650 ms to get response, and 677 ms overall
17-03-17 22:07:17.728 -07 000000438 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:17.728 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:17.728 -07 000000438 INF: Y Motor: Moving 1342 steps-18
17-03-17 22:07:17.728 -07 000000462 INF: FPGA: 'ZDACW 30405' command took 0 ms to send, 660 ms to get response, and 676 ms overall
17-03-17 22:07:17.728 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:17.738 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:17.738 -07 000000547 INF: FPGA: Recv ZDACR 30405
17-03-17 22:07:17.748 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 22:07:17.748 -07 000000462 INF: Z Motor: MoveAbsStepped took 695 ms (did NOT wait for settling yet))
17-03-17 22:07:18.038 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.975845,
17-03-17 22:07:18.108 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 22:07:18.108 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 22:07:18.138 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:18.148 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:07:18.148 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:07:18.148 -07 000000438 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:18.148 -07 000000438 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:07:18.148 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-17 22:07:19.098 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:19.098 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:07:19.108 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.108 -07 000000438 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:19.128 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:19.128 -07 000000438 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:19.128 -07 000000438 INF: Y Motor: Moved to 62.3955 after 2080 ms (table move)
17-03-17 22:07:19.128 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139185 mm (DAC = 30405)
17-03-17 22:07:19.128 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30954
17-03-17 22:07:19.138 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:07:19.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.138 -07 000000512 INF: FPGA: Recv ZSGSRD 30955
17-03-17 22:07:19.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:19.148 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.148 -07 000000480 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:07:19.158 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.158 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.158 -07 000000547 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:07:19.168 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.168 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30952
17-03-17 22:07:19.178 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.178 -07 000000480 INF: FPGA: Recv ZSGSRD 30952
17-03-17 22:07:19.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.188 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30958
17-03-17 22:07:19.198 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.198 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.198 -07 000000462 INF: FPGA: Recv ZSGSRD 30964
17-03-17 22:07:19.208 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.208 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30960
17-03-17 22:07:19.218 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.218 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:19.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30958
17-03-17 22:07:19.228 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.228 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:19.228 -07 000000480 INF: FPGA: Recv ZPIEZORD 26980
17-03-17 22:07:19.238 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:19.238 -07 000000448 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.8 V.
17-03-17 22:07:19.238 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30956 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30954 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30952 (-138.4 uncal um), Max = 30964 (-138.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:19.238 -07 000000448 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30956, posNoise = 8, negNoise = 4
17-03-17 22:07:19.238 -07 000000448 INF: Z Motor: After move to -0.139185, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:19.238 -07 000000448 INF: Z Motor: Settle wait time = 2084 ms, measure time = 103 ms (allowed 150 ms), total time = 2187 ms
17-03-17 22:07:19.238 -07 000000448 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:19.288 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2455 ms
17-03-17 22:07:19.288 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:19.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:19.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:19.288 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:19.288 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:19.288 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:19.288 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:19.288 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:19.288 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:19.298 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:19.298 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:19.298 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:07:19.298 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:07:19.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:19.348 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:19.548 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:19.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:19.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:19.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 22:07:19.588 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:19.588 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:19.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 22:07:19.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:07:19.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:19.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:07:19.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:07:19.688 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:19.688 -07 000000448 INF: Autofocus start
17-03-17 22:07:19.688 -07 000000448 INF: MeasureProfile start
17-03-17 22:07:19.688 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:19.698 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:19.698 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:19.698 -07 000000448 INF: MeasureProfile done
17-03-17 22:07:19.698 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:07:19.698 -07 000000448 INF: Autofocus finished
17-03-17 22:07:19.898 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:19.898 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 22:07:19.908 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139191263071487. ----------
17-03-17 22:07:19.908 -07 000000610 INF: Cycle	59	Tile	4	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:19.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28929, sync = True, waitForSettling = True)
17-03-17 22:07:19.908 -07 000000610 INF: Z Motor: Moving to -0.132428 mm, started at -0.139191 mm, distance = 6.76 um
17-03-17 22:07:19.908 -07 000000610 INF: FPGA: Xmit ZDACW 28929\n [Z Motor]
17-03-17 22:07:19.908 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:07:19.918 -07 000000610 INF: FPGA: 'ZDACW 28929' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:19.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:19.918 -07 000000551 INF: FPGA: Recv ZDACR 28929
17-03-17 22:07:19.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:19.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.078 -07 000000462 INF: FPGA: Recv ZSGSRD 29906
17-03-17 22:07:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.088 -07 000000382 INF: FPGA: Recv ZSGSRD 29900
17-03-17 22:07:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.098 -07 000000512 INF: FPGA: Recv ZSGSRD 29905
17-03-17 22:07:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.108 -07 000000462 INF: FPGA: Recv ZSGSRD 29906
17-03-17 22:07:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.118 -07 000000382 INF: FPGA: Recv ZSGSRD 29911
17-03-17 22:07:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.128 -07 000000512 INF: FPGA: Recv ZSGSRD 29905
17-03-17 22:07:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.138 -07 000000382 INF: FPGA: Recv ZSGSRD 29904
17-03-17 22:07:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.148 -07 000000547 INF: FPGA: Recv ZSGSRD 29905
17-03-17 22:07:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.158 -07 000000382 INF: FPGA: Recv ZSGSRD 29906
17-03-17 22:07:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:20.168 -07 000000438 INF: FPGA: Recv ZSGSRD 29905
17-03-17 22:07:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:20.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:20.188 -07 000000462 INF: FPGA: Recv ZPIEZORD 25632
17-03-17 22:07:20.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:07:20.198 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.4 V.
17-03-17 22:07:20.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29905 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29905 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29911 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:07:20.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29905, posNoise = 6, negNoise = 5
17-03-17 22:07:20.198 -07 000000610 INF: Z Motor: After move to -0.132428, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:20.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 22:07:20.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:20.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:20.198 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:20.198 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:20.198 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:20.198 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:20.198 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:20.198 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:20.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:20.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:20.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:20.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:20.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:07:20.208 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:20.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:07:20.208 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:20.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:07:20.228 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:07:20.228 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:07:20.228 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:07:20.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29106 150\n [Camera]
17-03-17 22:07:20.428 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:20.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:20.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:20.878 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:20.878 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:20.878 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 22:07:20.878 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:20.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:20.878 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:20.878 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:20.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 22:07:21.068 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29106 830
17-03-17 22:07:21.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:21.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 22:07:21.278 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 22:07:21.278 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:21.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:21.278 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:07:21.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 22:07:21.278 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:07:21.278 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:21.278 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:21.288 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:07:21.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:21.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:21.428 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:21.428 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:21.428 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 22:07:21.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:21.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:21.428 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:21.428 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:21.428 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 22:07:21.618 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:21.618 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:21.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29106 150' command took 2 ms to send, 1387 ms to get response, and 1394 ms overall
17-03-17 22:07:21.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:21.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132439416110496. ------
17-03-17 22:07:21.628 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13916 mm
17-03-17 22:07:21.628 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:21.628 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:21.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 22:07:21.838 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:07:21.838 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:21.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:07:21.838 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:07:21.838 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:21.838 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:21.838 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:07:21.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 22:07:21.848 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:07:21.858 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 22:07:21.858 -07 000000475 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 22:07:21.858 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:21.858 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:21.858 -07 000000547 INF: FPGA: Recv YRDPOS 127786
17-03-17 22:07:21.858 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 224 ms to get response, and 229 ms overall
17-03-17 22:07:21.858 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30400, sync = True, waitForSettling = False)
17-03-17 22:07:21.858 -07 000000547 INF: Z Motor: Moving to -0.139162 mm, started at -0.132439 mm, distance = -6.72 um
17-03-17 22:07:21.868 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:21.868 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:21.868 -07 000000475 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:21.868 -07 000000475 INF: Y Motor: Moving 1339 steps-15
17-03-17 22:07:21.868 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:21.878 -07 000000547 INF: FPGA: Xmit ZDACW 30400\n [Z Motor]
17-03-17 22:07:21.888 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:22.728 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 22:07:22.728 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:22.728 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:22.728 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 22:07:22.728 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 831 ms to get response, and 860 ms overall
17-03-17 22:07:22.728 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 850 ms to get response, and 866 ms overall
17-03-17 22:07:22.728 -07 000000547 INF: FPGA: 'ZDACW 30400' command took 0 ms to send, 840 ms to get response, and 864 ms overall
17-03-17 22:07:22.728 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:22.728 -07 000000486 INF: FPGA: Recv ZDACR 30400
17-03-17 22:07:22.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:22.738 -07 000000547 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:22.738 -07 000000547 INF: Z Motor: MoveAbsStepped took 874 ms (did NOT wait for settling yet))
17-03-17 22:07:22.768 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:22.768 -07 000000486 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:07:22.778 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:22.778 -07 000000475 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:22.778 -07 000000475 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:07:22.778 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 860 ms, distance = 0.837 mm, average velocity = 0.973 mm/sec
17-03-17 22:07:23.398 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.997626,
17-03-17 22:07:23.728 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:23.728 -07 000000480 INF: FPGA: Recv YRDPOS 129483
17-03-17 22:07:23.738 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:23.738 -07 000000475 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:23.768 -07 000000475 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:23.768 -07 000000475 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:23.768 -07 000000475 INF: Y Motor: Moved to 63.2241 after 1911 ms (table move)
17-03-17 22:07:23.768 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139162 mm (DAC = 30400)
17-03-17 22:07:23.768 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.778 -07 000000476 INF: FPGA: Recv ZSGSRD 30955
17-03-17 22:07:23.778 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:07:23.778 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.778 -07 000000475 INF: FPGA: Recv ZSGSRD 30950
17-03-17 22:07:23.788 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:23.788 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:07:23.798 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.798 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.798 -07 000000476 INF: FPGA: Recv ZSGSRD 30955
17-03-17 22:07:23.808 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.808 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.808 -07 000000480 INF: FPGA: Recv ZSGSRD 30949
17-03-17 22:07:23.818 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.818 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.818 -07 000000475 INF: FPGA: Recv ZSGSRD 30944
17-03-17 22:07:23.828 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.828 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.828 -07 000000486 INF: FPGA: Recv ZSGSRD 30957
17-03-17 22:07:23.838 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.838 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.838 -07 000000486 INF: FPGA: Recv ZSGSRD 30948
17-03-17 22:07:23.848 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.848 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.848 -07 000000486 INF: FPGA: Recv ZSGSRD 30950
17-03-17 22:07:23.858 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.858 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:23.858 -07 000000547 INF: FPGA: Recv ZSGSRD 30953
17-03-17 22:07:23.868 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.868 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:23.868 -07 000000486 INF: FPGA: Recv ZPIEZORD 26979
17-03-17 22:07:23.878 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:23.878 -07 000000512 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -8.8 V.
17-03-17 22:07:23.878 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30951 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30950 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30944 (-138.3 uncal um), Max = 30957 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:07:23.878 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30951, posNoise = 6, negNoise = 7
17-03-17 22:07:23.878 -07 000000512 INF: Z Motor: After move to -0.139162, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:23.878 -07 000000512 INF: Z Motor: Settle wait time = 1911 ms, measure time = 103 ms (allowed 150 ms), total time = 2014 ms
17-03-17 22:07:23.878 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:23.928 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2294 ms
17-03-17 22:07:23.928 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:23.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:23.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:23.928 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:23.928 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:23.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:23.928 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:23.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:23.928 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:23.938 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:23.938 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:23.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 22:07:23.948 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:07:23.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:23.998 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:24.198 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:24.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:24.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:24.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 22:07:24.238 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:24.238 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:24.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:07:24.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:07:24.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:24.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:07:24.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:07:24.338 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:24.338 -07 000000547 INF: Autofocus start
17-03-17 22:07:24.338 -07 000000547 INF: MeasureProfile start
17-03-17 22:07:24.338 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:24.348 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:24.348 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:24.358 -07 000000547 INF: MeasureProfile done
17-03-17 22:07:24.358 -07 000000547 INF: X=-3  Z correction [um]=-0.01800644
17-03-17 22:07:24.358 -07 000000547 INF: Autofocus finished
17-03-17 22:07:24.548 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:24.548 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:24.548 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139159142010778. ----------
17-03-17 22:07:24.548 -07 000000610 INF: Cycle	59	Tile	5	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:24.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28909, sync = True, waitForSettling = True)
17-03-17 22:07:24.558 -07 000000610 INF: Z Motor: Moving to -0.132337 mm, started at -0.139159 mm, distance = 6.82 um
17-03-17 22:07:24.558 -07 000000610 INF: FPGA: Xmit ZDACW 28909\n [Z Motor]
17-03-17 22:07:24.558 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:07:24.568 -07 000000610 INF: FPGA: 'ZDACW 28909' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:24.568 -07 000000433 INF: FPGA: Recv ZDACR 28909
17-03-17 22:07:24.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:24.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.728 -07 000000486 INF: FPGA: Recv ZSGSRD 29893
17-03-17 22:07:24.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:24.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.738 -07 000000433 INF: FPGA: Recv ZSGSRD 29883
17-03-17 22:07:24.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.748 -07 000000547 INF: FPGA: Recv ZSGSRD 29888
17-03-17 22:07:24.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.758 -07 000000433 INF: FPGA: Recv ZSGSRD 29889
17-03-17 22:07:24.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.768 -07 000000480 INF: FPGA: Recv ZSGSRD 29888
17-03-17 22:07:24.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.778 -07 000000512 INF: FPGA: Recv ZSGSRD 29891
17-03-17 22:07:24.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.788 -07 000000424 INF: FPGA: Recv ZSGSRD 29892
17-03-17 22:07:24.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29892
17-03-17 22:07:24.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.808 -07 000000547 INF: FPGA: Recv ZSGSRD 29887
17-03-17 22:07:24.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:24.818 -07 000000512 INF: FPGA: Recv ZSGSRD 29886
17-03-17 22:07:24.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:24.828 -07 000000475 INF: FPGA: Recv ZPIEZORD 25576
17-03-17 22:07:24.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:24.838 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.5 V.
17-03-17 22:07:24.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29889 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29888 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29883 (-131.5 uncal um), Max = 29893 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:24.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29889, posNoise = 4, negNoise = 6
17-03-17 22:07:24.838 -07 000000610 INF: Z Motor: After move to -0.132337, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:24.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 22:07:24.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:24.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:24.838 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:24.838 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:24.838 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:24.838 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:24.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:24.838 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:24.838 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:24.838 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:07:24.838 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:24.838 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:24.848 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:24.848 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:24.848 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:24.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:24.858 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:07:24.858 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:07:24.858 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:07:24.858 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:07:24.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29086 150\n [Camera]
17-03-17 22:07:25.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:25.508 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:25.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:25.508 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:25.508 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:25.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 22:07:25.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:25.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:25.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:25.508 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:25.508 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 22:07:25.708 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29086 830
17-03-17 22:07:25.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:25.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:07:25.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:07:25.908 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:25.908 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:25.908 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:07:25.908 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:07:25.908 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:07:25.908 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:25.918 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:25.918 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:07:26.068 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:26.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:26.068 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:26.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:26.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:26.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:26.208 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:26.208 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 22:07:26.208 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:26.208 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 22:07:26.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:26.258 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:26.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29086 150' command took 3 ms to send, 1382 ms to get response, and 1394 ms overall
17-03-17 22:07:26.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:26.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132336628716228. ------
17-03-17 22:07:26.258 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:26.258 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13878 mm
17-03-17 22:07:26.258 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:26.268 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:26.268 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:07:26.268 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 22:07:26.268 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 22:07:26.268 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30317, sync = True, waitForSettling = False)
17-03-17 22:07:26.268 -07 000000486 INF: Z Motor: Moving to -0.138782 mm, started at -0.132337 mm, distance = -6.45 um
17-03-17 22:07:26.268 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:26.278 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:26.288 -07 000000486 INF: FPGA: Xmit ZDACW 30317\n [Z Motor]
17-03-17 22:07:26.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:07:26.598 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 22:07:26.598 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:26.608 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 22:07:26.608 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 22:07:26.608 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:26.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:26.608 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:26.608 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms.
17-03-17 22:07:26.618 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:07:26.628 -07 000000424 INF: FPGA: Recv YRDPOS 129484
17-03-17 22:07:26.628 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:07:26.628 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:26.628 -07 000000486 INF: FPGA: 'ZDACW 30317' command took 0 ms to send, 332 ms to get response, and 358 ms overall
17-03-17 22:07:26.628 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 352 ms to get response, and 359 ms overall
17-03-17 22:07:26.628 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:26.628 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 342 ms to get response, and 358 ms overall
17-03-17 22:07:26.628 -07 000000512 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:26.628 -07 000000424 INF: FPGA: Recv ZDACR 30317
17-03-17 22:07:26.628 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:26.628 -07 000000512 INF: Y Motor: Moving 1341 steps-17
17-03-17 22:07:26.638 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:26.638 -07 000000486 INF: Z Motor: MoveAbsStepped took 366 ms (did NOT wait for settling yet))
17-03-17 22:07:26.638 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:26.938 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:27.008 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:07:27.008 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 22:07:27.048 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:27.058 -07 000000486 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:07:27.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 22:07:27.058 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:27.058 -07 000000512 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 22:07:27.058 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.838 mm, average velocity = 2.195 mm/sec
17-03-17 22:07:28.008 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:28.008 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:07:28.018 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.018 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:28.038 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:28.038 -07 000000512 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:28.038 -07 000000512 INF: Y Motor: Moved to 64.0571 after 1770 ms (table move)
17-03-17 22:07:28.038 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138782 mm (DAC = 30317)
17-03-17 22:07:28.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.048 -07 000000486 INF: FPGA: Recv ZSGSRD 30894
17-03-17 22:07:28.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 22:07:28.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.048 -07 000000424 INF: FPGA: Recv ZSGSRD 30898
17-03-17 22:07:28.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.058 -07 000000480 INF: FPGA: Recv ZSGSRD 30897
17-03-17 22:07:28.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.068 -07 000000424 INF: FPGA: Recv ZSGSRD 30903
17-03-17 22:07:28.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.078 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.078 -07 000000486 INF: FPGA: Recv ZSGSRD 30905
17-03-17 22:07:28.088 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.088 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.088 -07 000000424 INF: FPGA: Recv ZSGSRD 30893
17-03-17 22:07:28.098 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.098 -07 000000424 INF: FPGA: Recv ZSGSRD 30886
17-03-17 22:07:28.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.108 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.108 -07 000000480 INF: FPGA: Recv ZSGSRD 30890
17-03-17 22:07:28.118 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.118 -07 000000486 INF: FPGA: Recv ZSGSRD 30892
17-03-17 22:07:28.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.128 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.128 -07 000000480 INF: FPGA: Recv ZSGSRD 30894
17-03-17 22:07:28.138 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.138 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:28.138 -07 000000486 INF: FPGA: Recv ZPIEZORD 26921
17-03-17 22:07:28.148 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.148 -07 000000576 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -8.8 V.
17-03-17 22:07:28.148 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30895 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30886 (-137.9 uncal um), Max = 30905 (-138.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:07:28.148 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30895, posNoise = 10, negNoise = 9
17-03-17 22:07:28.148 -07 000000576 INF: Z Motor: After move to -0.138782, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:28.148 -07 000000576 INF: Z Motor: Settle wait time = 1773 ms, measure time = 103 ms (allowed 150 ms), total time = 1876 ms
17-03-17 22:07:28.148 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:28.198 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1930 ms
17-03-17 22:07:28.198 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:28.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:28.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:28.198 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:28.198 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:28.198 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:28.198 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:28.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:28.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:28.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:28.208 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:28.218 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:07:28.218 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:07:28.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:28.258 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:28.458 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:28.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:28.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:28.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:28.498 -07 000000576 INF: FPGA: Recv @CAMSNAP 282
17-03-17 22:07:28.508 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:28.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 22:07:28.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:07:28.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:28.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:28.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:07:28.608 -07 000000424 INF: Autofocus start
17-03-17 22:07:28.608 -07 000000424 INF: MeasureProfile start
17-03-17 22:07:28.608 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:28.608 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:28.618 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:28.618 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:28.618 -07 000000424 INF: MeasureProfile done
17-03-17 22:07:28.618 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:07:28.618 -07 000000424 INF: Autofocus finished
17-03-17 22:07:28.758 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.986717,
17-03-17 22:07:28.818 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:28.818 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:28.818 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13879938613084. ----------
17-03-17 22:07:28.818 -07 000000610 INF: Cycle	59	Tile	6	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:28.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28841, sync = True, waitForSettling = True)
17-03-17 22:07:28.828 -07 000000610 INF: Z Motor: Moving to -0.132026 mm, started at -0.138799 mm, distance = 6.77 um
17-03-17 22:07:28.828 -07 000000610 INF: FPGA: Xmit ZDACW 28841\n [Z Motor]
17-03-17 22:07:28.828 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:07:28.838 -07 000000610 INF: FPGA: 'ZDACW 28841' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:28.838 -07 000000551 INF: FPGA: Recv ZDACR 28841
17-03-17 22:07:28.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:28.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:28.998 -07 000000438 INF: FPGA: Recv ZSGSRD 29841
17-03-17 22:07:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29848
17-03-17 22:07:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.018 -07 000000462 INF: FPGA: Recv ZSGSRD 29842
17-03-17 22:07:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29836
17-03-17 22:07:29.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.038 -07 000000486 INF: FPGA: Recv ZSGSRD 29843
17-03-17 22:07:29.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.048 -07 000000551 INF: FPGA: Recv ZSGSRD 29838
17-03-17 22:07:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.058 -07 000000480 INF: FPGA: Recv ZSGSRD 29840
17-03-17 22:07:29.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29839
17-03-17 22:07:29.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.078 -07 000000486 INF: FPGA: Recv ZSGSRD 29845
17-03-17 22:07:29.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:29.088 -07 000000551 INF: FPGA: Recv ZSGSRD 29848
17-03-17 22:07:29.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:29.098 -07 000000462 INF: FPGA: Recv ZPIEZORD 25497
17-03-17 22:07:29.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:29.108 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.5 V.
17-03-17 22:07:29.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29842 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29842 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29836 (-131.2 uncal um), Max = 29848 (-131.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:29.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29842, posNoise = 6, negNoise = 6
17-03-17 22:07:29.108 -07 000000610 INF: Z Motor: After move to -0.132026, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:29.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:07:29.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:29.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:29.108 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:29.108 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:29.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:29.108 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:29.108 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:29.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:29.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:29.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:29.108 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:29.108 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:29.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:29.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:29.118 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:29.118 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:29.128 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:07:29.128 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:07:29.128 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:07:29.128 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:07:29.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 29018 150\n [Camera]
17-03-17 22:07:29.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:29.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:29.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:29.778 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:29.778 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:29.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:29.778 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:29.788 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:29.788 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:07:29.788 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:29.788 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:07:29.968 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29018 830
17-03-17 22:07:30.118 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:30.168 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 22:07:30.168 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:07:30.168 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:30.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 22:07:30.168 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 22:07:30.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:30.178 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:30.178 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:30.178 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:07:30.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:07:30.338 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:30.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:30.338 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:30.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:30.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:30.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:30.458 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:30.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:30.458 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:30.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:30.528 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:30.528 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:30.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 29018 150' command took 2 ms to send, 1383 ms to get response, and 1394 ms overall
17-03-17 22:07:30.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:30.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132034690745565. ------
17-03-17 22:07:30.528 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:30.528 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13864 mm
17-03-17 22:07:30.528 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:30.538 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:30.538 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:07:30.538 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30287, sync = True, waitForSettling = False)
17-03-17 22:07:30.538 -07 000000382 INF: Z Motor: Moving to -0.138645 mm, started at -0.132035 mm, distance = -6.61 um
17-03-17 22:07:30.538 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:30.538 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 22:07:30.538 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 22:07:30.548 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:30.548 -07 000000547 INF: FPGA: Recv YRDPOS 131189
17-03-17 22:07:30.558 -07 000000382 INF: FPGA: Xmit ZDACW 30287\n [Z Motor]
17-03-17 22:07:30.558 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:07:30.558 -07 000000486 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:30.558 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:30.558 -07 000000486 INF: Y Motor: Moving 1337 steps-11
17-03-17 22:07:30.558 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 22:07:30.568 -07 000000382 INF: FPGA: 'ZDACW 30287' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:07:30.568 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:30.568 -07 000000547 INF: FPGA: Recv ZDACR 30287
17-03-17 22:07:30.578 -07 000000382 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:30.578 -07 000000382 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 22:07:30.578 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:30.738 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:30.738 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 22:07:30.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:07:30.858 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:07:30.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:30.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:07:30.858 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:07:30.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:30.868 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:30.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:30.868 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 22:07:30.868 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:07:30.948 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:07:30.948 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:07:30.988 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:30.988 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 22:07:30.998 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:07:30.998 -07 000000486 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:30.998 -07 000000486 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:07:30.998 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 22:07:31.938 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:31.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:31.948 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:31.948 -07 000000576 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:07:31.958 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:31.958 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:31.978 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:31.978 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:07:31.978 -07 000000486 INF: Y Motor: Moved to 64.8794 after 1441 ms (table move)
17-03-17 22:07:31.978 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138645 mm (DAC = 30287)
17-03-17 22:07:31.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:31.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30866
17-03-17 22:07:31.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 22:07:31.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:31.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30871
17-03-17 22:07:31.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:31.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:31.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30869
17-03-17 22:07:32.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.008 -07 000000623 INF: FPGA: Recv ZSGSRD 30878
17-03-17 22:07:32.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30876
17-03-17 22:07:32.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.028 -07 000000486 INF: FPGA: Recv ZSGSRD 30878
17-03-17 22:07:32.038 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.038 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.038 -07 000000623 INF: FPGA: Recv ZSGSRD 30878
17-03-17 22:07:32.048 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.048 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.048 -07 000000486 INF: FPGA: Recv ZSGSRD 30870
17-03-17 22:07:32.058 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.058 -07 000000486 INF: FPGA: Recv ZSGSRD 30867
17-03-17 22:07:32.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30866
17-03-17 22:07:32.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.078 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:32.078 -07 000000486 INF: FPGA: Recv ZPIEZORD 26935
17-03-17 22:07:32.088 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.088 -07 000000438 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -8.7 V.
17-03-17 22:07:32.088 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30872 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30870 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30866 (-137.8 uncal um), Max = 30878 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:32.088 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30872, posNoise = 6, negNoise = 6
17-03-17 22:07:32.088 -07 000000438 INF: Z Motor: After move to -0.138645, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:32.088 -07 000000438 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms
17-03-17 22:07:32.088 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:32.138 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 22:07:32.138 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:32.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:32.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:32.138 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:32.138 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:32.138 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:32.138 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:32.138 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:32.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:32.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:32.138 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:32.148 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:07:32.148 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 22:07:32.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:32.198 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:32.398 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:32.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:32.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:32.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:32.438 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:32.438 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:32.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 22:07:32.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:07:32.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:32.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:32.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:07:32.538 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:32.538 -07 000000623 INF: Autofocus start
17-03-17 22:07:32.538 -07 000000623 INF: MeasureProfile start
17-03-17 22:07:32.538 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:32.548 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:32.548 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:32.548 -07 000000623 INF: MeasureProfile done
17-03-17 22:07:32.548 -07 000000623 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:07:32.548 -07 000000623 INF: Autofocus finished
17-03-17 22:07:32.748 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:32.748 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:32.748 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138651629251579. ----------
17-03-17 22:07:32.748 -07 000000610 INF: Cycle	59	Tile	7	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:32.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28782, sync = True, waitForSettling = True)
17-03-17 22:07:32.758 -07 000000610 INF: Z Motor: Moving to -0.131756 mm, started at -0.138652 mm, distance = 6.90 um
17-03-17 22:07:32.758 -07 000000610 INF: FPGA: Xmit ZDACW 28782\n [Z Motor]
17-03-17 22:07:32.758 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 22:07:32.768 -07 000000610 INF: FPGA: 'ZDACW 28782' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:32.768 -07 000000576 INF: FPGA: Recv ZDACR 28782
17-03-17 22:07:32.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.928 -07 000000576 INF: FPGA: Recv ZSGSRD 29803
17-03-17 22:07:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.938 -07 000000486 INF: FPGA: Recv ZSGSRD 29799
17-03-17 22:07:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.948 -07 000000576 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:07:32.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29804
17-03-17 22:07:32.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29805
17-03-17 22:07:32.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.978 -07 000000576 INF: FPGA: Recv ZSGSRD 29798
17-03-17 22:07:32.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.988 -07 000000424 INF: FPGA: Recv ZSGSRD 29797
17-03-17 22:07:32.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:32.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:32.998 -07 000000438 INF: FPGA: Recv ZSGSRD 29804
17-03-17 22:07:33.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:33.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29801
17-03-17 22:07:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:33.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:33.018 -07 000000551 INF: FPGA: Recv ZSGSRD 29798
17-03-17 22:07:33.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:33.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:33.028 -07 000000512 INF: FPGA: Recv ZPIEZORD 25508
17-03-17 22:07:33.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:33.038 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.4 V.
17-03-17 22:07:33.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29801 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29797 (-131.0 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:33.038 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 4, negNoise = 4
17-03-17 22:07:33.038 -07 000000610 INF: Z Motor: After move to -0.131756, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:33.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:07:33.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:33.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:33.038 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:33.038 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:33.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:33.038 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:33.038 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:33.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:33.038 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:33.038 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:33.038 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:33.048 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:33.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:33.048 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:33.048 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 22:07:33.048 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:33.058 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:07:33.058 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:07:33.058 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:07:33.058 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:07:33.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28958 150\n [Camera]
17-03-17 22:07:33.268 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:33.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:33.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:33.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:33.708 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:33.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:33.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:33.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:33.718 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:33.718 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:33.718 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:33.908 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28958 833
17-03-17 22:07:34.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:34.108 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:07:34.108 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:07:34.108 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:34.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:07:34.118 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 22:07:34.118 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:34.118 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:07:34.118 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:34.118 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.986717,
17-03-17 22:07:34.118 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:34.128 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 22:07:34.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:34.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:34.268 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:34.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:34.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:34.378 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:34.388 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:34.388 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:34.388 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:34.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:34.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:34.458 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:34.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28958 150' command took 2 ms to send, 1386 ms to get response, and 1394 ms overall
17-03-17 22:07:34.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:34.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131771298047753. ------
17-03-17 22:07:34.468 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13832 mm
17-03-17 22:07:34.468 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:34.468 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:34.468 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 22:07:34.468 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 22:07:34.468 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30215, sync = True, waitForSettling = False)
17-03-17 22:07:34.468 -07 000000512 INF: Z Motor: Moving to -0.138315 mm, started at -0.131771 mm, distance = -6.54 um
17-03-17 22:07:34.468 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:34.478 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:34.478 -07 000000512 INF: FPGA: Xmit ZDACW 30215\n [Z Motor]
17-03-17 22:07:34.478 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 22:07:34.488 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:34.488 -07 000000512 INF: FPGA: 'ZDACW 30215' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:07:34.488 -07 000000551 INF: FPGA: Recv YRDPOS 132873
17-03-17 22:07:34.498 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:34.498 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 22:07:34.498 -07 000000623 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:34.498 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:34.498 -07 000000623 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:07:34.508 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:34.508 -07 000000462 INF: FPGA: Recv ZDACR 30215
17-03-17 22:07:34.518 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:34.518 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:34.518 -07 000000512 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 22:07:34.698 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:34.698 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:07:34.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 22:07:34.788 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 22:07:34.788 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:34.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 22:07:34.788 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:07:34.788 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:34.788 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:34.788 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:34.788 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 22:07:34.798 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:07:34.888 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:07:34.888 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 22:07:34.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:34.928 -07 000000424 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:07:34.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:34.938 -07 000000623 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:34.938 -07 000000623 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 22:07:34.938 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 22:07:35.888 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:35.888 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-17 22:07:35.898 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:35.898 -07 000000623 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:35.918 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:35.918 -07 000000623 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:35.918 -07 000000623 INF: Y Motor: Moved to 65.7144 after 1451 ms (table move)
17-03-17 22:07:35.928 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138315 mm (DAC = 30215)
17-03-17 22:07:35.928 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.928 -07 000000424 INF: FPGA: Recv ZSGSRD 30816
17-03-17 22:07:35.938 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:35.938 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30823
17-03-17 22:07:35.948 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:35.948 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.948 -07 000000561 INF: FPGA: Recv ZSGSRD 30821
17-03-17 22:07:35.958 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:35.958 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30830
17-03-17 22:07:35.968 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:35.968 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.968 -07 000000561 INF: FPGA: Recv ZSGSRD 30820
17-03-17 22:07:35.978 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:35.978 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.978 -07 000000475 INF: FPGA: Recv ZSGSRD 30829
17-03-17 22:07:35.988 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:35.988 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.988 -07 000000480 INF: FPGA: Recv ZSGSRD 30823
17-03-17 22:07:35.998 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:35.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:35.998 -07 000000576 INF: FPGA: Recv ZSGSRD 30816
17-03-17 22:07:36.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.008 -07 000000576 INF: FPGA: Recv ZSGSRD 30823
17-03-17 22:07:36.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.018 -07 000000448 INF: FPGA: Recv ZSGSRD 30821
17-03-17 22:07:36.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.028 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:36.028 -07 000000448 INF: FPGA: Recv ZPIEZORD 26875
17-03-17 22:07:36.038 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.038 -07 000000486 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -8.7 V.
17-03-17 22:07:36.038 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30822 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30816 (-137.5 uncal um), Max = 30830 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:36.038 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30822, posNoise = 8, negNoise = 6
17-03-17 22:07:36.038 -07 000000486 INF: Z Motor: After move to -0.138315, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:36.038 -07 000000486 INF: Z Motor: Settle wait time = 1453 ms, measure time = 111 ms (allowed 150 ms), total time = 1564 ms
17-03-17 22:07:36.038 -07 000000486 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:36.078 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 22:07:36.078 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:36.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:36.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:36.078 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:36.078 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:36.078 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:36.078 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:36.078 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:07:36.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:36.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:36.088 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:36.098 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:07:36.098 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:07:36.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:36.148 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:36.348 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:36.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:36.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:36.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:36.388 -07 000000486 INF: FPGA: Recv @CAMSNAP 283
17-03-17 22:07:36.388 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:36.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 289 ms overall
17-03-17 22:07:36.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 22:07:36.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:36.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:36.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 22:07:36.488 -07 000000486 INF: Autofocus start
17-03-17 22:07:36.488 -07 000000486 INF: MeasureProfile start
17-03-17 22:07:36.488 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:36.488 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:36.498 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:36.498 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:36.498 -07 000000486 INF: MeasureProfile done
17-03-17 22:07:36.498 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:07:36.498 -07 000000486 INF: Autofocus finished
17-03-17 22:07:36.698 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:36.698 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:36.698 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138330418644491. ----------
17-03-17 22:07:36.698 -07 000000610 INF: Cycle	59	Tile	8	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:36.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28756, sync = True, waitForSettling = True)
17-03-17 22:07:36.708 -07 000000610 INF: Z Motor: Moving to -0.131637 mm, started at -0.138330 mm, distance = 6.69 um
17-03-17 22:07:36.708 -07 000000610 INF: FPGA: Xmit ZDACW 28756\n [Z Motor]
17-03-17 22:07:36.708 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:07:36.718 -07 000000610 INF: FPGA: 'ZDACW 28756' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:36.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:36.718 -07 000000486 INF: FPGA: Recv ZDACR 28756
17-03-17 22:07:36.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:36.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.878 -07 000000576 INF: FPGA: Recv ZSGSRD 29783
17-03-17 22:07:36.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:36.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29780
17-03-17 22:07:36.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.898 -07 000000576 INF: FPGA: Recv ZSGSRD 29783
17-03-17 22:07:36.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.908 -07 000000486 INF: FPGA: Recv ZSGSRD 29776
17-03-17 22:07:36.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.918 -07 000000448 INF: FPGA: Recv ZSGSRD 29783
17-03-17 22:07:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.928 -07 000000576 INF: FPGA: Recv ZSGSRD 29778
17-03-17 22:07:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.938 -07 000000547 INF: FPGA: Recv ZSGSRD 29783
17-03-17 22:07:36.938 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:36.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.948 -07 000000576 INF: FPGA: Recv ZSGSRD 29780
17-03-17 22:07:36.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.958 -07 000000486 INF: FPGA: Recv ZSGSRD 29777
17-03-17 22:07:36.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:36.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29787
17-03-17 22:07:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:36.978 -07 000000576 INF: FPGA: Recv ZPIEZORD 25486
17-03-17 22:07:36.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:36.988 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.4 V.
17-03-17 22:07:36.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29781 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29776 (-130.8 uncal um), Max = 29787 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:07:36.988 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29781, posNoise = 6, negNoise = 5
17-03-17 22:07:36.988 -07 000000610 INF: Z Motor: After move to -0.131637, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:36.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:07:36.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:36.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:36.988 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:36.988 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:36.988 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:36.988 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:36.988 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:36.988 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:36.988 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:36.988 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:36.988 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:36.988 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:36.998 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:36.998 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:36.998 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:07:36.998 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:36.998 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:07:36.998 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:07:37.008 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:07:37.008 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 22:07:37.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28933 150\n [Camera]
17-03-17 22:07:37.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 22:07:37.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:37.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:37.648 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:37.648 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:37.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:37.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:37.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:37.658 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:37.658 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:37.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:37.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28933 830
17-03-17 22:07:37.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:38.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 22:07:38.028 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 22:07:38.028 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:38.028 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:07:38.028 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:07:38.028 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:38.038 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:38.038 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:38.038 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:07:38.038 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 22:07:38.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:38.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:38.208 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:38.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:38.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:38.208 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:38.218 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:38.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:38.218 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:38.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:38.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:07:38.398 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:38.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28933 150' command took 2 ms to send, 1386 ms to get response, and 1393 ms overall
17-03-17 22:07:38.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:38.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131642813804918. ------
17-03-17 22:07:38.408 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:38.408 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13802 mm
17-03-17 22:07:38.408 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:38.408 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:38.408 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 22:07:38.408 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 22:07:38.408 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30150, sync = True, waitForSettling = False)
17-03-17 22:07:38.418 -07 000000486 INF: Z Motor: Moving to -0.138018 mm, started at -0.131643 mm, distance = -6.38 um
17-03-17 22:07:38.418 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:38.418 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:38.418 -07 000000576 INF: FPGA: Recv YRDPOS 134584
17-03-17 22:07:38.428 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:07:38.428 -07 000000486 INF: FPGA: Xmit ZDACW 30150\n [Z Motor]
17-03-17 22:07:38.428 -07 000000462 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:38.428 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:07:38.428 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:38.428 -07 000000462 INF: Y Motor: Moving 1340 steps-17
17-03-17 22:07:38.438 -07 000000486 INF: FPGA: 'ZDACW 30150' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:07:38.438 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:38.448 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:38.458 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:38.458 -07 000000476 INF: FPGA: Recv ZDACR 30150
17-03-17 22:07:38.468 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:38.468 -07 000000486 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:07:38.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 22:07:38.598 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:07:38.598 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:38.598 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:07:38.598 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 22:07:38.598 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:38.598 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:38.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 22:07:38.598 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:38.608 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:07:38.638 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:38.638 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 22:07:38.818 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:07:38.818 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 22:07:38.858 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:38.858 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:07:38.868 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:07:38.868 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:38.868 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:07:38.868 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.138 mm/sec
17-03-17 22:07:39.478 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.016692,
17-03-17 22:07:39.818 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:39.818 -07 000000623 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:07:39.828 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:39.828 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:39.848 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:39.848 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:39.848 -07 000000462 INF: Y Motor: Moved to 66.5396 after 1436 ms (table move)
17-03-17 22:07:39.848 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138018 mm (DAC = 30150)
17-03-17 22:07:39.848 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30783
17-03-17 22:07:39.858 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:07:39.858 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30768
17-03-17 22:07:39.868 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:39.868 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.868 -07 000000462 INF: FPGA: Recv ZSGSRD 30771
17-03-17 22:07:39.878 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.878 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.878 -07 000000462 INF: FPGA: Recv ZSGSRD 30776
17-03-17 22:07:39.888 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.888 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.888 -07 000000462 INF: FPGA: Recv ZSGSRD 30773
17-03-17 22:07:39.898 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.898 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.898 -07 000000547 INF: FPGA: Recv ZSGSRD 30777
17-03-17 22:07:39.908 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.908 -07 000000547 INF: FPGA: Recv ZSGSRD 30770
17-03-17 22:07:39.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.918 -07 000000547 INF: FPGA: Recv ZSGSRD 30769
17-03-17 22:07:39.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.928 -07 000000486 INF: FPGA: Recv ZSGSRD 30780
17-03-17 22:07:39.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:39.938 -07 000000486 INF: FPGA: Recv ZSGSRD 30769
17-03-17 22:07:39.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.948 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:39.948 -07 000000486 INF: FPGA: Recv ZPIEZORD 26774
17-03-17 22:07:39.958 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:39.958 -07 000000448 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.8 V.
17-03-17 22:07:39.958 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30774 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30772 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30768 (-137.2 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:39.958 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30774, posNoise = 9, negNoise = 6
17-03-17 22:07:39.958 -07 000000448 INF: Z Motor: After move to -0.138018, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:39.958 -07 000000448 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 22:07:39.958 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:40.008 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:07:40.008 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:40.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:40.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:40.008 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:40.008 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:40.008 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:40.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:40.008 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:40.008 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:40.018 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:40.018 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:40.028 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:07:40.028 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:07:40.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:40.068 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:40.268 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:40.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:40.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:40.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:40.308 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:40.308 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:40.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 22:07:40.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:07:40.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:40.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:40.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:07:40.508 -07 000000547 INF: Autofocus start
17-03-17 22:07:40.508 -07 000000547 INF: MeasureProfile start
17-03-17 22:07:40.508 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:40.508 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:40.518 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:40.518 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:40.518 -07 000000547 INF: MeasureProfile done
17-03-17 22:07:40.518 -07 000000547 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:07:40.518 -07 000000547 INF: Autofocus finished
17-03-17 22:07:40.718 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:40.718 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:40.718 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.138022056461687. ----------
17-03-17 22:07:40.718 -07 000000610 INF: Cycle	59	Tile	9	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:40.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-17 22:07:40.728 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.138022 mm, distance = 6.90 um
17-03-17 22:07:40.728 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-17 22:07:40.728 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:07:40.738 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:40.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:40.738 -07 000000547 INF: FPGA: Recv ZDACR 28644
17-03-17 22:07:40.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:40.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.898 -07 000000448 INF: FPGA: Recv ZSGSRD 29697
17-03-17 22:07:40.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.908 -07 000000448 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:07:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.918 -07 000000448 INF: FPGA: Recv ZSGSRD 29703
17-03-17 22:07:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.928 -07 000000448 INF: FPGA: Recv ZSGSRD 29698
17-03-17 22:07:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.938 -07 000000448 INF: FPGA: Recv ZSGSRD 29700
17-03-17 22:07:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.948 -07 000000486 INF: FPGA: Recv ZSGSRD 29699
17-03-17 22:07:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.958 -07 000000547 INF: FPGA: Recv ZSGSRD 29705
17-03-17 22:07:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.968 -07 000000448 INF: FPGA: Recv ZSGSRD 29702
17-03-17 22:07:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.978 -07 000000475 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:07:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:40.988 -07 000000486 INF: FPGA: Recv ZSGSRD 29696
17-03-17 22:07:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:40.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:40.998 -07 000000547 INF: FPGA: Recv ZPIEZORD 25373
17-03-17 22:07:41.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:41.008 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.5 V.
17-03-17 22:07:41.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29699 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29698 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29696 (-130.3 uncal um), Max = 29705 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:07:41.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29699, posNoise = 6, negNoise = 3
17-03-17 22:07:41.008 -07 000000610 INF: Z Motor: After move to -0.131124, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:41.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:07:41.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:41.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:41.008 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:41.008 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:41.008 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:41.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:41.008 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:41.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:41.008 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:41.008 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:41.008 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:41.008 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:41.018 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:41.018 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:41.018 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:41.018 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:41.028 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:07:41.028 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:07:41.028 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:07:41.028 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:07:41.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28821 150\n [Camera]
17-03-17 22:07:41.228 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:41.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:41.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:41.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:41.678 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:41.678 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:41.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:41.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:41.678 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:41.678 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:41.678 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:41.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28821 830
17-03-17 22:07:41.938 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:41.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:42.018 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:42.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:07:42.058 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:07:42.058 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:42.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 22:07:42.068 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:07:42.068 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:42.068 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:07:42.068 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:42.068 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:07:42.078 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:07:42.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:42.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:42.228 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:42.348 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:42.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:42.348 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:42.348 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:42.348 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:42.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:42.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:42.418 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:07:42.418 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:42.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28821 150' command took 2 ms to send, 1386 ms to get response, and 1393 ms overall
17-03-17 22:07:42.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:42.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131116028409294. ------
17-03-17 22:07:42.428 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:42.428 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13787 mm
17-03-17 22:07:42.428 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:42.428 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:42.428 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30118, sync = True, waitForSettling = False)
17-03-17 22:07:42.428 -07 000000486 INF: Z Motor: Moving to -0.137871 mm, started at -0.131116 mm, distance = -6.76 um
17-03-17 22:07:42.428 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 22:07:42.428 -07 000000476 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 22:07:42.438 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:42.438 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:42.438 -07 000000382 INF: FPGA: Recv YRDPOS 136273
17-03-17 22:07:42.448 -07 000000486 INF: FPGA: Xmit ZDACW 30118\n [Z Motor]
17-03-17 22:07:42.448 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 22:07:42.448 -07 000000476 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:42.448 -07 000000476 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:42.448 -07 000000476 INF: Y Motor: Moving 1349 steps-27
17-03-17 22:07:42.448 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:07:42.458 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:42.458 -07 000000486 INF: FPGA: 'ZDACW 30118' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:07:42.468 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:42.478 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:42.478 -07 000000480 INF: FPGA: Recv ZDACR 30118
17-03-17 22:07:42.488 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 22:07:42.488 -07 000000486 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 22:07:42.658 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:42.658 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 22:07:42.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 22:07:42.728 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 22:07:42.728 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:42.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:07:42.728 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:07:42.728 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:42.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:42.738 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 22:07:42.738 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:42.738 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:07:42.838 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 22:07:42.838 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 22:07:42.878 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:42.888 -07 000000382 INF: FPGA: Recv YRDPOS 137978
17-03-17 22:07:42.888 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:07:42.888 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:42.888 -07 000000476 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 22:07:42.888 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 22:07:43.838 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:43.838 -07 000000448 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:07:43.848 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:43.848 -07 000000476 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:43.868 -07 000000476 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:43.868 -07 000000476 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:07:43.868 -07 000000476 INF: Y Motor: Moved to 67.3726 after 1438 ms (table move)
17-03-17 22:07:43.868 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137871 mm (DAC = 30118)
17-03-17 22:07:43.868 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.878 -07 000000475 INF: FPGA: Recv ZSGSRD 30758
17-03-17 22:07:43.878 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:07:43.878 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.878 -07 000000475 INF: FPGA: Recv ZSGSRD 30752
17-03-17 22:07:43.888 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:43.888 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.888 -07 000000475 INF: FPGA: Recv ZSGSRD 30750
17-03-17 22:07:43.898 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.898 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.898 -07 000000623 INF: FPGA: Recv ZSGSRD 30751
17-03-17 22:07:43.908 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.908 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.908 -07 000000480 INF: FPGA: Recv ZSGSRD 30753
17-03-17 22:07:43.918 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.918 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30761
17-03-17 22:07:43.928 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.928 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.928 -07 000000382 INF: FPGA: Recv ZSGSRD 30749
17-03-17 22:07:43.938 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.938 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.938 -07 000000476 INF: FPGA: Recv ZSGSRD 30745
17-03-17 22:07:43.948 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.948 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.948 -07 000000476 INF: FPGA: Recv ZSGSRD 30752
17-03-17 22:07:43.958 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.958 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:43.958 -07 000000476 INF: FPGA: Recv ZSGSRD 30752
17-03-17 22:07:43.968 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.968 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:43.968 -07 000000448 INF: FPGA: Recv ZPIEZORD 26781
17-03-17 22:07:43.978 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:43.978 -07 000000576 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -8.7 V.
17-03-17 22:07:43.978 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30752 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30745 (-137.0 uncal um), Max = 30761 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:07:43.978 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30752, posNoise = 9, negNoise = 7
17-03-17 22:07:43.978 -07 000000576 INF: Z Motor: After move to -0.137871, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:43.978 -07 000000576 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 22:07:43.978 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:44.028 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 22:07:44.028 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:44.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:44.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:44.028 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:44.028 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:44.028 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:44.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:44.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:44.028 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:44.038 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:44.038 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:44.038 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:07:44.038 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 22:07:44.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:44.088 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 22:07:44.288 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 22:07:44.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 22:07:44.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:44.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:44.328 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:44.328 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:44.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:07:44.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 22:07:44.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:44.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:44.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:07:44.428 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:44.428 -07 000000551 INF: Autofocus start
17-03-17 22:07:44.428 -07 000000551 INF: MeasureProfile start
17-03-17 22:07:44.428 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:44.438 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:44.438 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:44.438 -07 000000551 INF: MeasureProfile done
17-03-17 22:07:44.438 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:07:44.438 -07 000000551 INF: Autofocus finished
17-03-17 22:07:44.638 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:44.638 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:44.638 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137880723794568. ----------
17-03-17 22:07:44.638 -07 000000610 INF: Cycle	59	Tile	10	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:44.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28625, sync = True, waitForSettling = True)
17-03-17 22:07:44.648 -07 000000610 INF: Z Motor: Moving to -0.131037 mm, started at -0.137881 mm, distance = 6.84 um
17-03-17 22:07:44.648 -07 000000610 INF: FPGA: Xmit ZDACW 28625\n [Z Motor]
17-03-17 22:07:44.648 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 22:07:44.658 -07 000000610 INF: FPGA: 'ZDACW 28625' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:44.658 -07 000000551 INF: FPGA: Recv ZDACR 28625
17-03-17 22:07:44.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:44.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.818 -07 000000576 INF: FPGA: Recv ZSGSRD 29687
17-03-17 22:07:44.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 22:07:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.838 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.043918,
17-03-17 22:07:44.838 -07 000000551 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:07:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:07:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.848 -07 000000551 INF: FPGA: Recv ZSGSRD 29687
17-03-17 22:07:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.878 -07 000000551 INF: FPGA: Recv ZSGSRD 29691
17-03-17 22:07:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.908 -07 000000433 INF: FPGA: Recv ZSGSRD 29686
17-03-17 22:07:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.918 -07 000000551 INF: FPGA: Recv ZSGSRD 29684
17-03-17 22:07:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.928 -07 000000512 INF: FPGA: Recv ZSGSRD 29689
17-03-17 22:07:44.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.938 -07 000000551 INF: FPGA: Recv ZSGSRD 29687
17-03-17 22:07:44.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.948 -07 000000512 INF: FPGA: Recv ZSGSRD 29688
17-03-17 22:07:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:44.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29682
17-03-17 22:07:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:44.968 -07 000000551 INF: FPGA: Recv ZPIEZORD 25383
17-03-17 22:07:44.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:44.978 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.5 V.
17-03-17 22:07:44.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29687 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29687 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29682 (-130.2 uncal um), Max = 29691 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:07:44.978 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29687, posNoise = 4, negNoise = 5
17-03-17 22:07:44.978 -07 000000610 INF: Z Motor: After move to -0.131037, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:44.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 22:07:44.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:44.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:44.978 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:44.978 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:44.978 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:44.978 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:44.978 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:44.978 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:44.978 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:44.978 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:44.978 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 22:07:44.988 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:44.988 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:07:44.988 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:44.988 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:44.988 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:44.998 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 22:07:44.998 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:07:44.998 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 22:07:44.998 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:07:44.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28802 150\n [Camera]
17-03-17 22:07:45.198 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:45.648 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:45.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:45.648 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:45.648 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:45.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:45.648 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:45.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:45.648 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:45.648 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:45.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:45.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28802 830
17-03-17 22:07:45.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 983
17-03-17 22:07:46.038 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:07:46.038 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:07:46.038 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:46.038 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 22:07:46.048 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:07:46.048 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:46.048 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:46.048 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:07:46.048 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:46.058 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:07:46.208 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:46.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:46.208 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:46.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:46.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:46.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:46.318 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:46.318 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:46.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:46.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:46.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:46.398 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:46.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28802 150' command took 2 ms to send, 1382 ms to get response, and 1394 ms overall
17-03-17 22:07:46.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:46.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131038937863593. ------
17-03-17 22:07:46.398 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:46.398 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13718 mm
17-03-17 22:07:46.398 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:46.408 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 22:07:46.408 -07 000000551 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 22:07:46.408 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:46.408 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29968, sync = True, waitForSettling = False)
17-03-17 22:07:46.408 -07 000000438 INF: Z Motor: Moving to -0.137185 mm, started at -0.131039 mm, distance = -6.15 um
17-03-17 22:07:46.408 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:46.408 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:07:46.408 -07 000000480 INF: FPGA: Recv YRDPOS 137979
17-03-17 22:07:46.418 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:46.418 -07 000000551 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:46.418 -07 000000551 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:46.418 -07 000000551 INF: Y Motor: Moving 1344 steps-22
17-03-17 22:07:46.418 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:46.428 -07 000000438 INF: FPGA: Xmit ZDACW 29968\n [Z Motor]
17-03-17 22:07:46.428 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:07:46.438 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:46.438 -07 000000438 INF: FPGA: 'ZDACW 29968' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:07:46.448 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:46.448 -07 000000561 INF: FPGA: Recv ZDACR 29968
17-03-17 22:07:46.458 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 22:07:46.458 -07 000000438 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 22:07:46.618 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:46.618 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 22:07:46.708 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 22:07:46.708 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 22:07:46.708 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:46.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 22:07:46.708 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 22:07:46.708 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:46.708 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:46.718 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:46.718 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 22:07:46.718 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:07:46.818 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:07:46.818 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 22:07:46.848 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:46.858 -07 000000623 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:07:46.868 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:46.868 -07 000000551 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:46.868 -07 000000551 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 22:07:46.868 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.100 mm/sec
17-03-17 22:07:46.938 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:46.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:47.818 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:47.818 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:07:47.828 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:47.828 -07 000000551 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:47.848 -07 000000551 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:47.848 -07 000000551 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:47.848 -07 000000551 INF: Y Motor: Moved to 68.2051 after 1441 ms (table move)
17-03-17 22:07:47.848 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137185 mm (DAC = 29968)
17-03-17 22:07:47.848 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.848 -07 000000551 INF: FPGA: Recv ZSGSRD 30653
17-03-17 22:07:47.858 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:47.858 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.858 -07 000000551 INF: FPGA: Recv ZSGSRD 30634
17-03-17 22:07:47.868 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.868 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.868 -07 000000486 INF: FPGA: Recv ZSGSRD 30642
17-03-17 22:07:47.878 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.878 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.878 -07 000000486 INF: FPGA: Recv ZSGSRD 30639
17-03-17 22:07:47.888 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.888 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.888 -07 000000486 INF: FPGA: Recv ZSGSRD 30642
17-03-17 22:07:47.898 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.898 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.898 -07 000000486 INF: FPGA: Recv ZSGSRD 30654
17-03-17 22:07:47.908 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.908 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30649
17-03-17 22:07:47.918 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.918 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30651
17-03-17 22:07:47.928 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.928 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.928 -07 000000486 INF: FPGA: Recv ZSGSRD 30640
17-03-17 22:07:47.938 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.938 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:47.938 -07 000000486 INF: FPGA: Recv ZSGSRD 30640
17-03-17 22:07:47.948 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.948 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:47.948 -07 000000486 INF: FPGA: Recv ZPIEZORD 26630
17-03-17 22:07:47.958 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:47.958 -07 000000424 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -8.8 V.
17-03-17 22:07:47.958 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30644 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30642 (-136.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30634 (-136.3 uncal um), Max = 30654 (-136.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:07:47.958 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30644, posNoise = 10, negNoise = 10
17-03-17 22:07:47.958 -07 000000424 INF: Z Motor: After move to -0.137185, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:47.958 -07 000000424 INF: Z Motor: Settle wait time = 1444 ms, measure time = 106 ms (allowed 150 ms), total time = 1550 ms
17-03-17 22:07:47.958 -07 000000424 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:48.008 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 22:07:48.008 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:48.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:48.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:48.008 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:48.008 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:48.008 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:48.008 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:48.008 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:07:48.008 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:48.018 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:48.018 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:48.028 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 22:07:48.028 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:07:48.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:48.078 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:48.278 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:48.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:48.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:48.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:48.318 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:48.318 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:48.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:07:48.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 22:07:48.388 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:48.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:48.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 22:07:48.418 -07 000000486 INF: Autofocus start
17-03-17 22:07:48.418 -07 000000486 INF: MeasureProfile start
17-03-17 22:07:48.418 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:48.428 -07 000000486 INF: MeasureProfile done
17-03-17 22:07:48.428 -07 000000486 INF: X=64  Z correction [um]=0.2839165
17-03-17 22:07:48.428 -07 000000486 INF: Autofocus finished
17-03-17 22:07:48.428 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:48.428 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 15 ms overall
17-03-17 22:07:48.428 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:48.638 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:48.638 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 22:07:48.638 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137186908883258. ----------
17-03-17 22:07:48.638 -07 000000610 INF: Cycle	59	Tile	11	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:48.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28542, sync = True, waitForSettling = True)
17-03-17 22:07:48.648 -07 000000610 INF: Z Motor: Moving to -0.130657 mm, started at -0.137187 mm, distance = 6.53 um
17-03-17 22:07:48.648 -07 000000610 INF: FPGA: Xmit ZDACW 28542\n [Z Motor]
17-03-17 22:07:48.648 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 22:07:48.658 -07 000000610 INF: FPGA: 'ZDACW 28542' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:48.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:48.658 -07 000000424 INF: FPGA: Recv ZDACR 28542
17-03-17 22:07:48.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:48.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.818 -07 000000486 INF: FPGA: Recv ZSGSRD 29632
17-03-17 22:07:48.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:48.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.828 -07 000000424 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:07:48.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.838 -07 000000547 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:07:48.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.848 -07 000000424 INF: FPGA: Recv ZSGSRD 29630
17-03-17 22:07:48.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.858 -07 000000475 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:07:48.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.868 -07 000000448 INF: FPGA: Recv ZSGSRD 29629
17-03-17 22:07:48.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.878 -07 000000475 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:07:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.888 -07 000000424 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:07:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.898 -07 000000486 INF: FPGA: Recv ZSGSRD 29629
17-03-17 22:07:48.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:48.908 -07 000000475 INF: FPGA: Recv ZSGSRD 29623
17-03-17 22:07:48.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:48.918 -07 000000476 INF: FPGA: Recv ZPIEZORD 25341
17-03-17 22:07:48.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:48.928 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.355 V. Piezo Error = -9.4 V.
17-03-17 22:07:48.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29628 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29628 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29623 (-129.8 uncal um), Max = 29632 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:07:48.928 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29628, posNoise = 4, negNoise = 5
17-03-17 22:07:48.928 -07 000000610 INF: Z Motor: After move to -0.130657, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:48.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:07:48.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:48.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:48.928 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:48.928 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:48.928 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:48.928 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:48.928 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:48.928 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:48.928 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:48.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:48.928 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:48.928 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:48.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:48.928 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:48.928 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:48.938 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:48.948 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:07:48.948 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 22:07:48.948 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:07:48.948 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:07:48.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28719 150\n [Camera]
17-03-17 22:07:49.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:49.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:49.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:49.598 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:49.598 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:49.598 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:49.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:49.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:49.598 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:49.598 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:49.598 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:49.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28719 830
17-03-17 22:07:49.938 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:49.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 22:07:49.978 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 22:07:49.978 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:49.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 22:07:49.978 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 22:07:49.978 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:49.988 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:49.988 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 22:07:49.988 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 22:07:49.998 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 22:07:50.158 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:50.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:50.158 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:50.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:50.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:50.268 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:50.268 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.001704,
17-03-17 22:07:50.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:50.268 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:50.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:50.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:50.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:07:50.348 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:50.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28719 150' command took 2 ms to send, 1382 ms to get response, and 1393 ms overall
17-03-17 22:07:50.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:50.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130659909347229. ------
17-03-17 22:07:50.348 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:50.348 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13730 mm
17-03-17 22:07:50.348 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:50.358 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:50.358 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:50.358 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29993, sync = True, waitForSettling = False)
17-03-17 22:07:50.358 -07 000000448 INF: Z Motor: Moving to -0.137299 mm, started at -0.130660 mm, distance = -6.64 um
17-03-17 22:07:50.358 -07 000000448 INF: FPGA: Xmit ZDACW 29993\n [Z Motor]
17-03-17 22:07:50.358 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 22:07:50.358 -07 000000475 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 22:07:50.358 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:07:50.368 -07 000000448 INF: FPGA: 'ZDACW 29993' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:50.368 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:50.378 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:50.378 -07 000000486 INF: FPGA: Recv YRDPOS 139684
17-03-17 22:07:50.388 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 22:07:50.388 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:50.388 -07 000000475 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:50.388 -07 000000475 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:50.388 -07 000000475 INF: Y Motor: Moving 1340 steps-15
17-03-17 22:07:50.388 -07 000000424 INF: FPGA: Recv ZDACR 29993
17-03-17 22:07:50.398 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:50.398 -07 000000448 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:07:50.398 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:50.568 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:50.568 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 22:07:50.668 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:07:50.668 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 22:07:50.668 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:50.668 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 22:07:50.668 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:07:50.668 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:50.668 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:50.668 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 22:07:50.668 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:50.678 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:07:50.768 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 22:07:50.768 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 22:07:50.808 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:51.728 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:07:51.728 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 910 ms to get response, and 913 ms overall
17-03-17 22:07:51.728 -07 000000475 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:51.728 -07 000000475 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:07:51.728 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-17 22:07:51.938 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:51.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:52.678 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:52.678 -07 000000486 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:07:52.688 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:52.688 -07 000000475 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:52.708 -07 000000475 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:52.708 -07 000000475 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:52.708 -07 000000475 INF: Y Motor: Moved to 69.0278 after 2355 ms (table move)
17-03-17 22:07:52.718 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137299 mm (DAC = 29993)
17-03-17 22:07:52.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.718 -07 000000480 INF: FPGA: Recv ZSGSRD 30668
17-03-17 22:07:52.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.728 -07 000000486 INF: FPGA: Recv ZSGSRD 30665
17-03-17 22:07:52.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.738 -07 000000512 INF: FPGA: Recv ZSGSRD 30663
17-03-17 22:07:52.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.748 -07 000000512 INF: FPGA: Recv ZSGSRD 30660
17-03-17 22:07:52.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30663
17-03-17 22:07:52.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30666
17-03-17 22:07:52.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.778 -07 000000512 INF: FPGA: Recv ZSGSRD 30668
17-03-17 22:07:52.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30660
17-03-17 22:07:52.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.798 -07 000000512 INF: FPGA: Recv ZSGSRD 30661
17-03-17 22:07:52.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:52.808 -07 000000475 INF: FPGA: Recv ZSGSRD 30661
17-03-17 22:07:52.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.818 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:52.818 -07 000000480 INF: FPGA: Recv ZPIEZORD 26730
17-03-17 22:07:52.828 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:52.828 -07 000000462 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -8.7 V.
17-03-17 22:07:52.828 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30664 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30663 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30668 (-136.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:52.828 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30664, posNoise = 4, negNoise = 4
17-03-17 22:07:52.828 -07 000000462 INF: Z Motor: After move to -0.137299, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:52.828 -07 000000462 INF: Z Motor: Settle wait time = 2359 ms, measure time = 110 ms (allowed 150 ms), total time = 2469 ms
17-03-17 22:07:52.828 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:52.868 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2512 ms
17-03-17 22:07:52.868 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:52.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:52.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:52.868 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:52.868 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:52.868 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:52.868 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:52.868 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:52.868 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:52.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 22:07:52.878 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:52.878 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 22:07:52.878 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 22:07:52.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:52.928 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:53.128 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:53.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:53.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:53.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:53.168 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:53.168 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:53.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 22:07:53.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:07:53.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:53.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:07:53.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 22:07:53.268 -07 000000475 INF: Autofocus start
17-03-17 22:07:53.268 -07 000000475 INF: MeasureProfile start
17-03-17 22:07:53.268 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:53.278 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:53.278 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 4 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:53.278 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:53.288 -07 000000475 INF: MeasureProfile done
17-03-17 22:07:53.288 -07 000000475 INF: X=32  Z correction [um]=0.1299841
17-03-17 22:07:53.288 -07 000000475 INF: Autofocus finished
17-03-17 22:07:53.478 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:53.478 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 22:07:53.478 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137315393126093. ----------
17-03-17 22:07:53.478 -07 000000610 INF: Cycle	59	Tile	12	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:53.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28534, sync = True, waitForSettling = True)
17-03-17 22:07:53.488 -07 000000610 INF: Z Motor: Moving to -0.130620 mm, started at -0.137315 mm, distance = 6.70 um
17-03-17 22:07:53.488 -07 000000610 INF: FPGA: Xmit ZDACW 28534\n [Z Motor]
17-03-17 22:07:53.488 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:07:53.498 -07 000000610 INF: FPGA: 'ZDACW 28534' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:07:53.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:53.498 -07 000000448 INF: FPGA: Recv ZDACR 28534
17-03-17 22:07:53.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:53.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29624
17-03-17 22:07:53.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:53.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29625
17-03-17 22:07:53.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.678 -07 000000476 INF: FPGA: Recv ZSGSRD 29618
17-03-17 22:07:53.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.688 -07 000000475 INF: FPGA: Recv ZSGSRD 29618
17-03-17 22:07:53.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29626
17-03-17 22:07:53.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.708 -07 000000433 INF: FPGA: Recv ZSGSRD 29623
17-03-17 22:07:53.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.718 -07 000000476 INF: FPGA: Recv ZSGSRD 29628
17-03-17 22:07:53.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.728 -07 000000475 INF: FPGA: Recv ZSGSRD 29621
17-03-17 22:07:53.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.738 -07 000000547 INF: FPGA: Recv ZSGSRD 29616
17-03-17 22:07:53.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:53.748 -07 000000382 INF: FPGA: Recv ZSGSRD 29624
17-03-17 22:07:53.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:53.758 -07 000000462 INF: FPGA: Recv ZPIEZORD 25343
17-03-17 22:07:53.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:53.768 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.4 V.
17-03-17 22:07:53.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29622 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29624 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29616 (-129.8 uncal um), Max = 29628 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:07:53.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29622, posNoise = 6, negNoise = 6
17-03-17 22:07:53.768 -07 000000610 INF: Z Motor: After move to -0.130620, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:53.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 22:07:53.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:53.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:53.768 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:53.768 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:53.768 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:53.768 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:53.768 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:53.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:53.768 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:53.768 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:53.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:53.768 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:53.778 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 22:07:53.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:53.778 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:53.778 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:53.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:07:53.778 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:07:53.788 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:07:53.788 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 22:07:53.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28711 150\n [Camera]
17-03-17 22:07:53.988 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:54.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:07:54.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:07:54.438 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:54.438 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:54.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:54.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:07:54.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:07:54.438 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:54.438 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:54.438 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:54.628 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28711 830
17-03-17 22:07:54.778 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:54.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 22:07:54.818 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 22:07:54.818 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:54.828 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:54.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 22:07:54.828 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:07:54.828 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:54.828 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:07:54.828 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:07:54.828 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 22:07:54.988 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:54.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:54.988 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:55.098 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:55.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:55.098 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:55.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:55.108 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:55.108 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:55.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:55.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:55.178 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:55.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28711 150' command took 2 ms to send, 1388 ms to get response, and 1395 ms overall
17-03-17 22:07:55.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:55.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130621364074378. ------
17-03-17 22:07:55.188 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:55.188 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13709 mm
17-03-17 22:07:55.188 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:55.188 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 22:07:55.188 -07 000000486 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 22:07:55.188 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29947, sync = True, waitForSettling = False)
17-03-17 22:07:55.188 -07 000000480 INF: Z Motor: Moving to -0.137089 mm, started at -0.130621 mm, distance = -6.47 um
17-03-17 22:07:55.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:55.198 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:07:55.198 -07 000000480 INF: FPGA: Xmit ZDACW 29947\n [Z Motor]
17-03-17 22:07:55.198 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:07:55.208 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:55.208 -07 000000480 INF: FPGA: 'ZDACW 29947' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 22:07:55.208 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 22:07:55.218 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:55.218 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 22:07:55.218 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:55.218 -07 000000486 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:55.218 -07 000000486 INF: Y Motor: Moving 1352 steps-30
17-03-17 22:07:55.228 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:55.228 -07 000000424 INF: FPGA: Recv ZDACR 29947
17-03-17 22:07:55.238 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:55.238 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 22:07:55.238 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:55.418 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:55.418 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 22:07:55.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 22:07:55.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 22:07:55.508 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 22:07:55.508 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:55.508 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 22:07:55.508 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:55.508 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:55.508 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 22:07:55.508 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:55.518 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 22:07:55.608 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:07:55.608 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 22:07:55.628 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.989471,
17-03-17 22:07:55.668 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:55.668 -07 000000433 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:07:55.678 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:07:55.678 -07 000000486 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:55.678 -07 000000486 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 22:07:55.678 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.845 mm, average velocity = 2.133 mm/sec
17-03-17 22:07:56.628 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:56.628 -07 000000547 INF: FPGA: Recv YRDPOS 143080
17-03-17 22:07:56.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:07:56.638 -07 000000486 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:56.658 -07 000000486 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:07:56.658 -07 000000486 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:07:56.658 -07 000000486 INF: Y Motor: Moved to 69.8633 after 1470 ms (table move)
17-03-17 22:07:56.668 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137089 mm (DAC = 29947)
17-03-17 22:07:56.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30639
17-03-17 22:07:56.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30634
17-03-17 22:07:56.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.688 -07 000000433 INF: FPGA: Recv ZSGSRD 30621
17-03-17 22:07:56.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30629
17-03-17 22:07:56.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.708 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30624
17-03-17 22:07:56.718 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.718 -07 000000486 INF: FPGA: Recv ZSGSRD 30633
17-03-17 22:07:56.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.728 -07 000000433 INF: FPGA: Recv ZSGSRD 30633
17-03-17 22:07:56.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.738 -07 000000486 INF: FPGA: Recv ZSGSRD 30631
17-03-17 22:07:56.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.748 -07 000000433 INF: FPGA: Recv ZSGSRD 30637
17-03-17 22:07:56.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:56.758 -07 000000433 INF: FPGA: Recv ZSGSRD 30631
17-03-17 22:07:56.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.768 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:56.768 -07 000000486 INF: FPGA: Recv ZPIEZORD 26695
17-03-17 22:07:56.778 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:56.778 -07 000000551 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -8.7 V.
17-03-17 22:07:56.778 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30631 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30632 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30621 (-136.2 uncal um), Max = 30639 (-136.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 22:07:56.778 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30631, posNoise = 8, negNoise = 10
17-03-17 22:07:56.778 -07 000000551 INF: Z Motor: After move to -0.137089, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:56.778 -07 000000551 INF: Z Motor: Settle wait time = 1473 ms, measure time = 110 ms (allowed 150 ms), total time = 1583 ms
17-03-17 22:07:56.778 -07 000000551 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:07:56.818 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 22:07:56.818 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:07:56.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:56.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:56.818 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:56.818 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:07:56.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:56.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 22:07:56.818 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:07:56.818 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:56.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:56.828 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:07:56.828 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 22:07:56.828 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 22:07:56.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:07:56.878 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:07:56.938 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:07:56.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:07:57.078 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:07:57.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:07:57.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:07:57.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:07:57.118 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:07:57.118 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:07:57.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 22:07:57.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 22:07:57.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:57.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:07:57.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 22:07:57.218 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:57.218 -07 000000551 INF: Autofocus start
17-03-17 22:07:57.218 -07 000000551 INF: MeasureProfile start
17-03-17 22:07:57.218 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:57.228 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:07:57.228 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:07:57.228 -07 000000551 INF: MeasureProfile done
17-03-17 22:07:57.238 -07 000000551 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 22:07:57.238 -07 000000551 INF: Autofocus finished
17-03-17 22:07:57.428 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:07:57.428 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:57.428 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.137103394125415. ----------
17-03-17 22:07:57.438 -07 000000610 INF: Cycle	59	Tile	13	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:07:57.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28442, sync = True, waitForSettling = True)
17-03-17 22:07:57.438 -07 000000610 INF: Z Motor: Moving to -0.130199 mm, started at -0.137103 mm, distance = 6.90 um
17-03-17 22:07:57.438 -07 000000610 INF: FPGA: Xmit ZDACW 28442\n [Z Motor]
17-03-17 22:07:57.438 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:07:57.448 -07 000000610 INF: FPGA: 'ZDACW 28442' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:07:57.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:57.448 -07 000000551 INF: FPGA: Recv ZDACR 28442
17-03-17 22:07:57.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:07:57.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.608 -07 000000438 INF: FPGA: Recv ZSGSRD 29557
17-03-17 22:07:57.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.618 -07 000000486 INF: FPGA: Recv ZSGSRD 29559
17-03-17 22:07:57.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29556
17-03-17 22:07:57.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29562
17-03-17 22:07:57.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29554
17-03-17 22:07:57.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.658 -07 000000486 INF: FPGA: Recv ZSGSRD 29561
17-03-17 22:07:57.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.668 -07 000000433 INF: FPGA: Recv ZSGSRD 29558
17-03-17 22:07:57.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.678 -07 000000438 INF: FPGA: Recv ZSGSRD 29558
17-03-17 22:07:57.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.688 -07 000000433 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:07:57.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:07:57.698 -07 000000433 INF: FPGA: Recv ZSGSRD 29560
17-03-17 22:07:57.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:07:57.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:07:57.718 -07 000000433 INF: FPGA: Recv ZPIEZORD 25298
17-03-17 22:07:57.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:07:57.728 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.4 V.
17-03-17 22:07:57.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29558 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29554 (-129.4 uncal um), Max = 29562 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:07:57.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29558, posNoise = 4, negNoise = 4
17-03-17 22:07:57.728 -07 000000610 INF: Z Motor: After move to -0.130199, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:07:57.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 22:07:57.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:07:57.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:07:57.728 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:07:57.728 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:07:57.728 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:07:57.728 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:07:57.728 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:07:57.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:07:57.728 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:07:57.728 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:07:57.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:07:57.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:07:57.728 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:07:57.738 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:07:57.738 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:07:57.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:07:57.738 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:07:57.738 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:07:57.748 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:07:57.748 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:07:57.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28619 150\n [Camera]
17-03-17 22:07:57.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:07:58.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 639
17-03-17 22:07:58.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 639
17-03-17 22:07:58.398 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:58.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:58.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 22:07:58.398 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 639
17-03-17 22:07:58.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 639
17-03-17 22:07:58.398 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:58.398 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:58.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 22:07:58.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28619 830
17-03-17 22:07:58.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:07:58.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:07:58.908 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 22:07:58.908 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:58.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 505 ms.
17-03-17 22:07:58.908 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 22:07:58.908 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:58.908 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:58.908 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 22:07:58.908 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:58.918 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 22:07:58.948 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:07:58.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:07:58.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:07:58.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:07:58.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:07:58.958 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:07:58.958 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:07:58.958 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:07:58.958 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:07:58.958 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:07:59.138 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:07:59.148 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:07:59.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28619 150' command took 2 ms to send, 1390 ms to get response, and 1394 ms overall
17-03-17 22:07:59.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:07:59.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130210214497305. ------
17-03-17 22:07:59.148 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:07:59.148 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13660 mm
17-03-17 22:07:59.148 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:07:59.158 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:07:59.158 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:07:59.158 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 22:07:59.158 -07 000000475 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 22:07:59.158 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:07:59.158 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29840, sync = True, waitForSettling = False)
17-03-17 22:07:59.158 -07 000000438 INF: Z Motor: Moving to -0.136599 mm, started at -0.130210 mm, distance = -6.39 um
17-03-17 22:07:59.168 -07 000000438 INF: FPGA: Xmit ZDACW 29840\n [Z Motor]
17-03-17 22:07:59.168 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:07:59.178 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:59.178 -07 000000438 INF: FPGA: 'ZDACW 29840' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:07:59.178 -07 000000448 INF: FPGA: Recv YRDPOS 143081
17-03-17 22:07:59.188 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:07:59.188 -07 000000475 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:59.188 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:07:59.188 -07 000000561 INF: FPGA: Recv ZDACR 29840
17-03-17 22:07:59.188 -07 000000475 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:07:59.188 -07 000000475 INF: Y Motor: Moving 1342 steps-19
17-03-17 22:07:59.198 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:07:59.198 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:07:59.198 -07 000000438 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 22:07:59.358 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:07:59.358 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:07:59.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:07:59.358 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:07:59.358 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:59.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 22:07:59.358 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 22:07:59.358 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:07:59.368 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:59.368 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 22:07:59.368 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:07:59.368 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 22:07:59.568 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 22:07:59.568 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 22:07:59.608 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:07:59.618 -07 000000438 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:07:59.618 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:07:59.618 -07 000000475 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:07:59.618 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:07:59.618 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-17 22:08:00.568 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:00.568 -07 000000551 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:08:00.578 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:00.578 -07 000000475 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:00.598 -07 000000475 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:00.598 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:08:00.598 -07 000000475 INF: Y Motor: Moved to 70.6890 after 1444 ms (table move)
17-03-17 22:08:00.598 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136599 mm (DAC = 29840)
17-03-17 22:08:00.598 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.608 -07 000000486 INF: FPGA: Recv ZSGSRD 30563
17-03-17 22:08:00.608 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 22:08:00.608 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.608 -07 000000475 INF: FPGA: Recv ZSGSRD 30553
17-03-17 22:08:00.618 -07 000000623 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:08:00.618 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.618 -07 000000551 INF: FPGA: Recv ZSGSRD 30552
17-03-17 22:08:00.628 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.628 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.628 -07 000000512 INF: FPGA: Recv ZSGSRD 30553
17-03-17 22:08:00.638 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.638 -07 000000448 INF: FPGA: Recv ZSGSRD 30557
17-03-17 22:08:00.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.648 -07 000000475 INF: FPGA: Recv ZSGSRD 30563
17-03-17 22:08:00.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.658 -07 000000551 INF: FPGA: Recv ZSGSRD 30552
17-03-17 22:08:00.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.678 -07 000000486 INF: FPGA: Recv ZSGSRD 30551
17-03-17 22:08:00.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:08:00.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.688 -07 000000480 INF: FPGA: Recv ZSGSRD 30550
17-03-17 22:08:00.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.698 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:00.698 -07 000000512 INF: FPGA: Recv ZSGSRD 30557
17-03-17 22:08:00.708 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.708 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:00.708 -07 000000561 INF: FPGA: Recv ZPIEZORD 26600
17-03-17 22:08:00.718 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:00.718 -07 000000623 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -8.7 V.
17-03-17 22:08:00.718 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30555 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30553 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30550 (-135.8 uncal um), Max = 30563 (-135.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:08:00.718 -07 000000623 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30555, posNoise = 8, negNoise = 5
17-03-17 22:08:00.718 -07 000000623 INF: Z Motor: After move to -0.136599, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:00.718 -07 000000623 INF: Z Motor: Settle wait time = 1447 ms, measure time = 112 ms (allowed 150 ms), total time = 1559 ms
17-03-17 22:08:00.718 -07 000000623 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 22:08:00.758 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 22:08:00.758 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:08:00.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:00.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:00.758 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:00.758 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:00.758 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:08:00.758 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:00.758 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:00.758 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:08:00.768 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:08:00.768 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:08:00.778 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:08:00.778 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 22:08:00.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:08:00.818 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:08:00.988 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 3.983999,
17-03-17 22:08:01.018 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:08:01.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:08:01.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:08:01.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 22:08:01.058 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:08:01.058 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 22:08:01.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 22:08:01.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 22:08:01.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:01.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:08:01.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 22:08:01.158 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:01.158 -07 000000476 INF: Autofocus start
17-03-17 22:08:01.158 -07 000000476 INF: MeasureProfile start
17-03-17 22:08:01.158 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:01.168 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:08:01.168 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:08:01.168 -07 000000476 INF: MeasureProfile done
17-03-17 22:08:01.168 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:08:01.168 -07 000000476 INF: Autofocus finished
17-03-17 22:08:01.368 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:08:01.368 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:08:01.378 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136615154002641. ----------
17-03-17 22:08:01.378 -07 000000610 INF: Cycle	59	Tile	14	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:08:01.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28347, sync = True, waitForSettling = True)
17-03-17 22:08:01.378 -07 000000610 INF: Z Motor: Moving to -0.129764 mm, started at -0.136615 mm, distance = 6.85 um
17-03-17 22:08:01.378 -07 000000610 INF: FPGA: Xmit ZDACW 28347\n [Z Motor]
17-03-17 22:08:01.378 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 22:08:01.388 -07 000000610 INF: FPGA: 'ZDACW 28347' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:08:01.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:01.388 -07 000000480 INF: FPGA: Recv ZDACR 28347
17-03-17 22:08:01.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:08:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.548 -07 000000551 INF: FPGA: Recv ZSGSRD 29490
17-03-17 22:08:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.558 -07 000000480 INF: FPGA: Recv ZSGSRD 29481
17-03-17 22:08:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29494
17-03-17 22:08:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.578 -07 000000480 INF: FPGA: Recv ZSGSRD 29490
17-03-17 22:08:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.588 -07 000000551 INF: FPGA: Recv ZSGSRD 29485
17-03-17 22:08:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.598 -07 000000551 INF: FPGA: Recv ZSGSRD 29492
17-03-17 22:08:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.608 -07 000000480 INF: FPGA: Recv ZSGSRD 29487
17-03-17 22:08:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.618 -07 000000480 INF: FPGA: Recv ZSGSRD 29491
17-03-17 22:08:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.628 -07 000000551 INF: FPGA: Recv ZSGSRD 29486
17-03-17 22:08:01.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:01.638 -07 000000551 INF: FPGA: Recv ZSGSRD 29481
17-03-17 22:08:01.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:01.648 -07 000000480 INF: FPGA: Recv ZPIEZORD 25210
17-03-17 22:08:01.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:01.658 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.325 V. Piezo Error = -9.4 V.
17-03-17 22:08:01.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29488 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29488 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29481 (-128.9 uncal um), Max = 29494 (-129.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 22:08:01.658 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29488, posNoise = 6, negNoise = 7
17-03-17 22:08:01.658 -07 000000610 INF: Z Motor: After move to -0.129764, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:01.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:08:01.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:01.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:01.658 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:01.658 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:01.658 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:08:01.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:08:01.658 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:08:01.658 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:01.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:08:01.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:08:01.658 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:01.658 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:08:01.668 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:08:01.668 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:08:01.668 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:08:01.668 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:08:01.678 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:08:01.678 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:08:01.678 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 22:08:01.678 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:08:01.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28524 150\n [Camera]
17-03-17 22:08:01.878 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:08:01.938 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:01.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:02.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:08:02.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:08:02.318 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:02.318 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:02.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 22:08:02.328 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:08:02.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:08:02.328 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:02.328 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:02.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:08:02.518 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28524 832
17-03-17 22:08:02.658 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:08:02.698 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 22:08:02.698 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 22:08:02.698 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:02.698 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:02.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 22:08:02.698 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:08:02.698 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:02.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:02.708 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:08:02.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 22:08:02.878 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:08:02.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:08:02.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:02.878 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:02.878 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start.
17-03-17 22:08:02.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:08:02.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:08:02.878 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:02.878 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:02.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start.
17-03-17 22:08:03.068 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:08:03.078 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:08:03.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28524 150' command took 2 ms to send, 1390 ms to get response, and 1397 ms overall
17-03-17 22:08:03.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:08:03.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129760519647382. ------
17-03-17 22:08:03.078 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:03.078 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13653 mm
17-03-17 22:08:03.078 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:08:03.078 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:03.088 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:08:03.088 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:08:03.088 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 22:08:03.088 -07 000000480 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 22:08:03.088 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29824, sync = True, waitForSettling = False)
17-03-17 22:08:03.088 -07 000000424 INF: Z Motor: Moving to -0.136526 mm, started at -0.129761 mm, distance = -6.77 um
17-03-17 22:08:03.098 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:03.098 -07 000000438 INF: FPGA: Recv YRDPOS 144771
17-03-17 22:08:03.108 -07 000000424 INF: FPGA: Xmit ZDACW 29824\n [Z Motor]
17-03-17 22:08:03.108 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 22:08:03.108 -07 000000480 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:03.108 -07 000000480 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:08:03.108 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-17 22:08:03.108 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 22:08:03.118 -07 000000424 INF: FPGA: 'ZDACW 29824' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:08:03.118 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:08:03.128 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:03.128 -07 000000438 INF: FPGA: Recv ZDACR 29824
17-03-17 22:08:03.138 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:08:03.138 -07 000000424 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 22:08:03.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 22:08:03.268 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:08:03.278 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:03.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:08:03.278 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 22:08:03.278 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:03.278 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:03.278 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:08:03.278 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 22:08:03.288 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:08:03.288 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:08:03.288 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 22:08:03.498 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 22:08:03.498 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 22:08:03.528 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:03.538 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:08:03.538 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:08:03.538 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:03.538 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 22:08:03.538 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-17 22:08:04.488 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:04.488 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 22:08:04.498 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:04.498 -07 000000480 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:04.518 -07 000000480 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:04.518 -07 000000480 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:08:04.518 -07 000000480 INF: Y Motor: Moved to 71.5190 after 1433 ms (table move)
17-03-17 22:08:04.518 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136526 mm (DAC = 29824)
17-03-17 22:08:04.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.528 -07 000000512 INF: FPGA: Recv ZSGSRD 30539
17-03-17 22:08:04.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 22:08:04.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.528 -07 000000561 INF: FPGA: Recv ZSGSRD 30541
17-03-17 22:08:04.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:08:04.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.538 -07 000000438 INF: FPGA: Recv ZSGSRD 30532
17-03-17 22:08:04.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.548 -07 000000618 INF: FPGA: Recv ZSGSRD 30542
17-03-17 22:08:04.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.558 -07 000000458 INF: FPGA: Recv ZSGSRD 30548
17-03-17 22:08:04.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.568 -07 000000476 INF: FPGA: Recv ZSGSRD 30547
17-03-17 22:08:04.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.578 -07 000000438 INF: FPGA: Recv ZSGSRD 30542
17-03-17 22:08:04.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.588 -07 000000382 INF: FPGA: Recv ZSGSRD 30541
17-03-17 22:08:04.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.598 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.598 -07 000000551 INF: FPGA: Recv ZSGSRD 30537
17-03-17 22:08:04.608 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.608 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:04.608 -07 000000486 INF: FPGA: Recv ZSGSRD 30537
17-03-17 22:08:04.618 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.618 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:04.618 -07 000000618 INF: FPGA: Recv ZPIEZORD 26561
17-03-17 22:08:04.628 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:04.628 -07 000000462 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.551 V. Piezo Error = -8.8 V.
17-03-17 22:08:04.628 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30541 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30541 (-135.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30532 (-135.7 uncal um), Max = 30548 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 22:08:04.628 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30541, posNoise = 7, negNoise = 9
17-03-17 22:08:04.628 -07 000000462 INF: Z Motor: After move to -0.136526, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:04.628 -07 000000462 INF: Z Motor: Settle wait time = 1436 ms, measure time = 101 ms (allowed 150 ms), total time = 1537 ms
17-03-17 22:08:04.628 -07 000000462 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 22:08:04.678 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 22:08:04.678 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:08:04.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:04.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:04.678 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:04.678 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:04.678 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:08:04.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:04.678 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:04.678 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:08:04.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:08:04.688 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:08:04.698 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:08:04.698 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 22:08:04.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:08:04.748 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:08:04.948 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:08:04.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:08:04.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:08:04.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 22:08:04.988 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:08:04.988 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 22:08:04.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 22:08:05.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 22:08:05.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:05.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:08:05.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:08:05.088 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:05.088 -07 000000512 INF: Autofocus start
17-03-17 22:08:05.088 -07 000000512 INF: MeasureProfile start
17-03-17 22:08:05.098 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:05.098 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 22:08:05.098 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:08:05.098 -07 000000512 INF: MeasureProfile done
17-03-17 22:08:05.098 -07 000000512 INF: X=-128  Z correction [um]=-0.6264838
17-03-17 22:08:05.098 -07 000000512 INF: Autofocus finished
17-03-17 22:08:05.298 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:08:05.298 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 22:08:05.308 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136525215032656. ----------
17-03-17 22:08:05.308 -07 000000610 INF: Cycle	59	Tile	15	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:08:05.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28200, sync = True, waitForSettling = True)
17-03-17 22:08:05.308 -07 000000610 INF: Z Motor: Moving to -0.129091 mm, started at -0.136525 mm, distance = 7.43 um
17-03-17 22:08:05.308 -07 000000610 INF: FPGA: Xmit ZDACW 28200\n [Z Motor]
17-03-17 22:08:05.308 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 22:08:05.318 -07 000000610 INF: FPGA: 'ZDACW 28200' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:08:05.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:05.318 -07 000000547 INF: FPGA: Recv ZDACR 28200
17-03-17 22:08:05.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:08:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.478 -07 000000475 INF: FPGA: Recv ZSGSRD 29383
17-03-17 22:08:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.488 -07 000000476 INF: FPGA: Recv ZSGSRD 29383
17-03-17 22:08:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.498 -07 000000480 INF: FPGA: Recv ZSGSRD 29384
17-03-17 22:08:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.508 -07 000000438 INF: FPGA: Recv ZSGSRD 29382
17-03-17 22:08:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.518 -07 000000547 INF: FPGA: Recv ZSGSRD 29384
17-03-17 22:08:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29387
17-03-17 22:08:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.538 -07 000000618 INF: FPGA: Recv ZSGSRD 29384
17-03-17 22:08:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.548 -07 000000448 INF: FPGA: Recv ZSGSRD 29379
17-03-17 22:08:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.558 -07 000000486 INF: FPGA: Recv ZSGSRD 29385
17-03-17 22:08:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:05.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29381
17-03-17 22:08:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:05.578 -07 000000458 INF: FPGA: Recv ZPIEZORD 25076
17-03-17 22:08:05.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:05.588 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.5 V.
17-03-17 22:08:05.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29383 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29384 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29379 (-128.3 uncal um), Max = 29387 (-128.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:08:05.588 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29383, posNoise = 4, negNoise = 4
17-03-17 22:08:05.588 -07 000000610 INF: Z Motor: After move to -0.129091, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:05.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 22:08:05.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:05.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:05.588 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:05.588 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:08:05.588 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:05.588 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:08:05.588 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:08:05.588 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:05.588 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:08:05.588 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:08:05.588 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:08:05.588 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:08:05.598 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 22:08:05.598 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:08:05.598 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:08:05.598 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:08:05.598 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 22:08:05.598 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:08:05.608 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 22:08:05.608 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 22:08:05.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28377 150\n [Camera]
17-03-17 22:08:05.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:08:06.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:08:06.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:08:06.258 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:06.258 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:06.258 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-17 22:08:06.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:08:06.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:08:06.258 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:06.258 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:06.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-17 22:08:06.348 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.011254,
17-03-17 22:08:06.448 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28377 830
17-03-17 22:08:06.598 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 981
17-03-17 22:08:06.628 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 22:08:06.628 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 22:08:06.628 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:06.638 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 22:08:06.638 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 22:08:06.638 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:06.638 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:06.638 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:08:06.638 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:06.648 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 22:08:06.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:08:06.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:08:06.808 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:06.808 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:06.808 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 22:08:06.818 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:08:06.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:08:06.818 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:06.818 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:06.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 22:08:06.938 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:06.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:06.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:08:07.008 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:08:07.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28377 150' command took 2 ms to send, 1390 ms to get response, and 1395 ms overall
17-03-17 22:08:07.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:08:07.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129085977372497. ------
17-03-17 22:08:07.008 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:07.008 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13542 mm
17-03-17 22:08:07.008 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:08:07.018 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 22:08:07.018 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29582, sync = True, waitForSettling = False)
17-03-17 22:08:07.018 -07 000000475 INF: Z Motor: Moving to -0.135418 mm, started at -0.129086 mm, distance = -6.33 um
17-03-17 22:08:07.018 -07 000000475 INF: FPGA: Xmit ZDACW 29582\n [Z Motor]
17-03-17 22:08:07.018 -07 000000547 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 22:08:07.018 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:07.018 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 22:08:07.018 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:08:07.028 -07 000000475 INF: FPGA: 'ZDACW 29582' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:07.028 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:08:07.038 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:07.038 -07 000000618 INF: FPGA: Recv YRDPOS 146472
17-03-17 22:08:07.048 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:07.048 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:08:07.048 -07 000000547 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:07.048 -07 000000476 INF: FPGA: Recv ZDACR 29582
17-03-17 22:08:07.048 -07 000000547 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:08:07.048 -07 000000547 INF: Y Motor: Moving 1349 steps-28
17-03-17 22:08:07.058 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:08:07.058 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:08:07.058 -07 000000475 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 22:08:07.208 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 22:08:07.208 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 22:08:07.208 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:07.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 22:08:07.208 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 22:08:07.208 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:07.208 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:07.218 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:08:07.218 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 22:08:07.218 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:08:07.228 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:08:07.228 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 22:08:07.428 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 22:08:07.428 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 382 ms overall
17-03-17 22:08:07.468 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:07.478 -07 000000618 INF: FPGA: Recv YRDPOS 148172
17-03-17 22:08:07.478 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 22:08:07.478 -07 000000547 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:07.478 -07 000000547 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 22:08:07.478 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-17 22:08:08.428 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:08.428 -07 000000476 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:08:08.438 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.438 -07 000000547 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:08.458 -07 000000547 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:08.458 -07 000000547 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:08:08.458 -07 000000547 INF: Y Motor: Moved to 72.3501 after 1447 ms (table move)
17-03-17 22:08:08.468 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135418 mm (DAC = 29582)
17-03-17 22:08:08.468 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.468 -07 000000458 INF: FPGA: Recv ZSGSRD 30374
17-03-17 22:08:08.478 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30370
17-03-17 22:08:08.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.488 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.488 -07 000000547 INF: FPGA: Recv ZSGSRD 30369
17-03-17 22:08:08.498 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.498 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.498 -07 000000512 INF: FPGA: Recv ZSGSRD 30373
17-03-17 22:08:08.508 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.508 -07 000000512 INF: FPGA: Recv ZSGSRD 30372
17-03-17 22:08:08.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.518 -07 000000512 INF: FPGA: Recv ZSGSRD 30373
17-03-17 22:08:08.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.528 -07 000000547 INF: FPGA: Recv ZSGSRD 30368
17-03-17 22:08:08.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.538 -07 000000512 INF: FPGA: Recv ZSGSRD 30366
17-03-17 22:08:08.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.548 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.548 -07 000000512 INF: FPGA: Recv ZSGSRD 30368
17-03-17 22:08:08.558 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.558 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:08.558 -07 000000547 INF: FPGA: Recv ZSGSRD 30374
17-03-17 22:08:08.568 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.568 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:08.568 -07 000000512 INF: FPGA: Recv ZPIEZORD 26368
17-03-17 22:08:08.578 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:08.578 -07 000000576 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -8.8 V.
17-03-17 22:08:08.578 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30371 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30371 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30366 (-134.6 uncal um), Max = 30374 (-134.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:08:08.578 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30371, posNoise = 3, negNoise = 5
17-03-17 22:08:08.578 -07 000000576 INF: Z Motor: After move to -0.135418, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:08.578 -07 000000576 INF: Z Motor: Settle wait time = 1450 ms, measure time = 110 ms (allowed 150 ms), total time = 1560 ms
17-03-17 22:08:08.578 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 22:08:08.618 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 22:08:08.618 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:08:08.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:08.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:08.618 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:08.618 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:08.618 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:08:08.618 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:08.618 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:08.618 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:08:08.628 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 22:08:08.628 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:08:08.638 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 22:08:08.638 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 22:08:08.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:08:08.688 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:08:08.888 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:08:08.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:08:08.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:08:08.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 22:08:08.928 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:08:08.928 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 22:08:08.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 22:08:09.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 22:08:09.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:09.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:08:09.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 22:08:09.028 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:09.028 -07 000000476 INF: Autofocus start
17-03-17 22:08:09.028 -07 000000476 INF: MeasureProfile start
17-03-17 22:08:09.028 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:09.038 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:08:09.038 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:08:09.038 -07 000000476 INF: MeasureProfile done
17-03-17 22:08:09.038 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 22:08:09.038 -07 000000476 INF: Autofocus finished
17-03-17 22:08:09.238 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:08:09.238 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:08:09.238 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135433098968557. ----------
17-03-17 22:08:09.238 -07 000000610 INF: Cycle	59	Tile	16	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:08:09.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28106, sync = True, waitForSettling = True)
17-03-17 22:08:09.248 -07 000000610 INF: Z Motor: Moving to -0.128661 mm, started at -0.135433 mm, distance = 6.77 um
17-03-17 22:08:09.248 -07 000000610 INF: FPGA: Xmit ZDACW 28106\n [Z Motor]
17-03-17 22:08:09.248 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 22:08:09.258 -07 000000610 INF: FPGA: 'ZDACW 28106' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:09.258 -07 000000475 INF: FPGA: Recv ZDACR 28106
17-03-17 22:08:09.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:08:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29321
17-03-17 22:08:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.428 -07 000000475 INF: FPGA: Recv ZSGSRD 29315
17-03-17 22:08:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.438 -07 000000475 INF: FPGA: Recv ZSGSRD 29315
17-03-17 22:08:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.448 -07 000000475 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:08:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.458 -07 000000475 INF: FPGA: Recv ZSGSRD 29316
17-03-17 22:08:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.468 -07 000000475 INF: FPGA: Recv ZSGSRD 29322
17-03-17 22:08:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.478 -07 000000475 INF: FPGA: Recv ZSGSRD 29315
17-03-17 22:08:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.488 -07 000000618 INF: FPGA: Recv ZSGSRD 29324
17-03-17 22:08:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:08:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:09.508 -07 000000618 INF: FPGA: Recv ZSGSRD 29318
17-03-17 22:08:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:09.518 -07 000000476 INF: FPGA: Recv ZPIEZORD 25004
17-03-17 22:08:09.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:09.528 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.5 V.
17-03-17 22:08:09.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29318 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29315 (-127.9 uncal um), Max = 29324 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 22:08:09.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29318, posNoise = 6, negNoise = 3
17-03-17 22:08:09.528 -07 000000610 INF: Z Motor: After move to -0.128661, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:09.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:08:09.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:09.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:09.528 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:09.528 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:09.528 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:08:09.528 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:09.528 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:08:09.528 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:08:09.528 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:08:09.528 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:08:09.538 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 22:08:09.538 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:08:09.538 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:08:09.538 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:08:09.538 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:08:09.538 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:08:09.548 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 22:08:09.548 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 22:08:09.548 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 22:08:09.548 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 22:08:09.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28283 150\n [Camera]
17-03-17 22:08:09.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:08:10.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:08:10.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:08:10.198 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:10.198 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:10.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) start.
17-03-17 22:08:10.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:08:10.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:08:10.198 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:10.198 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:10.198 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 22:08:10.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28283 830
17-03-17 22:08:10.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:08:10.578 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2369425112, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 22:08:10.578 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 22:08:10.578 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:10.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 22:08:10.578 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 22:08:10.578 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:10.578 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:08:10.578 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 22:08:10.588 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:08:10.588 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 22:08:10.748 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:08:10.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:08:10.748 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:10.748 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:10.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 22:08:10.758 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:08:10.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:08:10.758 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:10.758 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:10.758 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 22:08:10.938 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:08:10.948 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:08:10.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28283 150' command took 2 ms to send, 1390 ms to get response, and 1394 ms overall
17-03-17 22:08:10.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:08:10.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128668403583283. ------
17-03-17 22:08:10.948 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:11.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 22:08:11.148 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 22:08:11.148 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:11.148 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 22:08:11.148 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 22:08:11.148 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:11.148 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:11.158 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:08:11.158 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:08:11.158 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:08:11.168 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13523 mm
17-03-17 22:08:11.168 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:08:11.168 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:11.168 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 215 ms to get response, and 217 ms overall
17-03-17 22:08:11.168 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:08:11.168 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 22:08:11.168 -07 000000476 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 22:08:11.178 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:12.038 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29541, sync = True, waitForSettling = False)
17-03-17 22:08:12.038 -07 000000551 INF: Z Motor: Moving to -0.135230 mm, started at -0.128668 mm, distance = -6.56 um
17-03-17 22:08:12.038 -07 000000551 INF: FPGA: Xmit ZDACW 29541\n [Z Motor]
17-03-17 22:08:12.568 -07 000000462 INF: FPGA: Recv YRDPOS 148173
17-03-17 22:08:12.568 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:08:12.568 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:12.568 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:08:12.568 -07 000000551 INF: FPGA: 'ZDACW 29541' command took 2 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 22:08:12.568 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:12.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:12.568 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1390 ms to get response, and 1394 ms overall
17-03-17 22:08:12.568 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1380 ms to get response, and 1393 ms overall
17-03-17 22:08:12.568 -07 000000476 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:12.568 -07 000000476 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:08:12.568 -07 000000476 INF: Y Motor: Moving 1348 steps-27
17-03-17 22:08:12.568 -07 000000576 INF: FPGA: Recv ZDACR 29541
17-03-17 22:08:12.578 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:08:12.578 -07 000000551 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 22:08:12.578 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:08:12.878 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.030322,
17-03-17 22:08:12.948 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:08:12.948 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 22:08:12.988 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:12.998 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:08:12.998 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 22:08:12.998 -07 000000476 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:12.998 -07 000000476 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 22:08:12.998 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.183 mm/sec
17-03-17 22:08:13.948 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:13.948 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:08:13.958 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:13.958 -07 000000476 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:13.978 -07 000000476 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:13.978 -07 000000476 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:08:13.978 -07 000000476 INF: Y Motor: Moved to 73.1763 after 2809 ms (table move)
17-03-17 22:08:13.978 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135230 mm (DAC = 29541)
17-03-17 22:08:13.978 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:13.988 -07 000000382 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:08:13.998 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:13.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:13.998 -07 000000462 INF: FPGA: Recv ZSGSRD 30333
17-03-17 22:08:14.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.008 -07 000000424 INF: FPGA: Recv ZSGSRD 30343
17-03-17 22:08:14.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.018 -07 000000476 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:08:14.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.028 -07 000000382 INF: FPGA: Recv ZSGSRD 30346
17-03-17 22:08:14.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.038 -07 000000623 INF: FPGA: Recv ZSGSRD 30342
17-03-17 22:08:14.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.048 -07 000000551 INF: FPGA: Recv ZSGSRD 30340
17-03-17 22:08:14.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.058 -07 000000462 INF: FPGA: Recv ZSGSRD 30337
17-03-17 22:08:14.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.068 -07 000000382 INF: FPGA: Recv ZSGSRD 30333
17-03-17 22:08:14.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.078 -07 000000561 INF: FPGA: Recv ZSGSRD 30336
17-03-17 22:08:14.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.088 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:14.088 -07 000000462 INF: FPGA: Recv ZPIEZORD 26375
17-03-17 22:08:14.098 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.098 -07 000000486 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.7 V.
17-03-17 22:08:14.098 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30339 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30340 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30333 (-134.4 uncal um), Max = 30346 (-134.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 22:08:14.098 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30339, posNoise = 7, negNoise = 6
17-03-17 22:08:14.098 -07 000000486 INF: Z Motor: After move to -0.135230, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:14.098 -07 000000486 INF: Z Motor: Settle wait time = 1948 ms, measure time = 111 ms (allowed 150 ms), total time = 2059 ms
17-03-17 22:08:14.098 -07 000000486 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 22:08:14.138 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2967 ms
17-03-17 22:08:14.138 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:08:14.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:14.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:14.138 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:14.138 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:08:14.138 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:14.138 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:14.138 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 22:08:14.138 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:08:14.148 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:08:14.148 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:08:14.158 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:08:14.158 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:08:14.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:08:14.198 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:08:14.398 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:08:14.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:08:14.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:08:14.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-17 22:08:14.438 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:08:14.438 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 22:08:14.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 22:08:14.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 22:08:14.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:14.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 22:08:14.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 22:08:14.538 -07 000000551 INF: Autofocus start
17-03-17 22:08:14.538 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:14.538 -07 000000551 INF: MeasureProfile start
17-03-17 22:08:14.538 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:14.548 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:08:14.548 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:08:14.548 -07 000000551 INF: MeasureProfile done
17-03-17 22:08:14.548 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:08:14.548 -07 000000551 INF: Autofocus finished
17-03-17 22:08:14.748 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:08:14.748 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 22:08:14.748 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135227524180021. ----------
17-03-17 22:08:14.748 -07 000000610 INF: Cycle	59	Tile	17	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:08:14.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28048, sync = True, waitForSettling = True)
17-03-17 22:08:14.758 -07 000000610 INF: Z Motor: Moving to -0.128396 mm, started at -0.135228 mm, distance = 6.83 um
17-03-17 22:08:14.758 -07 000000610 INF: FPGA: Xmit ZDACW 28048\n [Z Motor]
17-03-17 22:08:14.758 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 22:08:14.768 -07 000000610 INF: FPGA: 'ZDACW 28048' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:14.768 -07 000000561 INF: FPGA: Recv ZDACR 28048
17-03-17 22:08:14.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:08:14.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.928 -07 000000448 INF: FPGA: Recv ZSGSRD 29278
17-03-17 22:08:14.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:14.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.938 -07 000000448 INF: FPGA: Recv ZSGSRD 29275
17-03-17 22:08:14.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.948 -07 000000448 INF: FPGA: Recv ZSGSRD 29284
17-03-17 22:08:14.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.958 -07 000000561 INF: FPGA: Recv ZSGSRD 29276
17-03-17 22:08:14.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.968 -07 000000561 INF: FPGA: Recv ZSGSRD 29277
17-03-17 22:08:14.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.978 -07 000000561 INF: FPGA: Recv ZSGSRD 29278
17-03-17 22:08:14.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.988 -07 000000561 INF: FPGA: Recv ZSGSRD 29271
17-03-17 22:08:14.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:14.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:14.998 -07 000000448 INF: FPGA: Recv ZSGSRD 29272
17-03-17 22:08:15.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:15.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:15.008 -07 000000561 INF: FPGA: Recv ZSGSRD 29271
17-03-17 22:08:15.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:15.018 -07 000000551 INF: FPGA: Recv ZSGSRD 29272
17-03-17 22:08:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:15.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:15.028 -07 000000551 INF: FPGA: Recv ZPIEZORD 24943
17-03-17 22:08:15.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:15.038 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.5 V.
17-03-17 22:08:15.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29275 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29276 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29271 (-127.6 uncal um), Max = 29284 (-127.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:08:15.038 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29275, posNoise = 9, negNoise = 4
17-03-17 22:08:15.038 -07 000000610 INF: Z Motor: After move to -0.128396, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:15.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 22:08:15.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:15.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:15.038 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:15.038 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:15.038 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:08:15.038 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:15.038 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:15.038 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:08:15.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:08:15.038 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:08:15.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:08:15.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:08:15.048 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 22:08:15.048 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:08:15.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 22:08:15.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:08:15.058 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:08:15.058 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 22:08:15.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:08:15.058 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 22:08:15.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28225 150\n [Camera]
17-03-17 22:08:15.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:08:15.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:08:15.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:08:15.708 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:15.708 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:15.708 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:08:15.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:08:15.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:08:15.708 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:15.708 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:15.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 22:08:15.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28225 830
17-03-17 22:08:16.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:08:16.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 22:08:16.108 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 22:08:16.108 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:16.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:08:16.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 22:08:16.118 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:16.118 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:16.118 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:08:16.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:16.128 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:08:16.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:08:16.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:08:16.268 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:16.268 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:16.268 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 22:08:16.408 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:08:16.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:08:16.408 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:16.408 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:16.408 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:08:16.458 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:08:16.458 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:08:16.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28225 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-17 22:08:16.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:08:16.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128392162461187. ------
17-03-17 22:08:16.468 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:16.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 409 ms.
17-03-17 22:08:16.678 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 22:08:16.678 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:16.678 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 22:08:16.688 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 22:08:16.698 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13472 mm
17-03-17 22:08:16.698 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:08:16.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 22:08:16.788 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 22:08:16.788 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:16.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 22:08:16.798 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:08:16.808 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:16.818 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 348 ms overall
17-03-17 22:08:16.818 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:08:16.818 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 22:08:16.818 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 22:08:16.828 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:17.498 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29429, sync = True, waitForSettling = False)
17-03-17 22:08:17.498 -07 000000433 INF: Z Motor: Moving to -0.134717 mm, started at -0.128392 mm, distance = -6.33 um
17-03-17 22:08:17.498 -07 000000433 INF: FPGA: Xmit ZDACW 29429\n [Z Motor]
17-03-17 22:08:18.028 -07 000000480 INF: FPGA: Recv YRDPOS 149865
17-03-17 22:08:18.028 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:18.028 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1190 ms to get response, and 1209 ms overall
17-03-17 22:08:18.028 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:08:18.028 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 22:08:18.028 -07 000000433 INF: FPGA: 'ZDACW 29429' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 22:08:18.028 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:18.028 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:08:18.028 -07 000000561 INF: Y Motor: Moving 1354 steps-33
17-03-17 22:08:18.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:18.028 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1200 ms to get response, and 1209 ms overall
17-03-17 22:08:18.028 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:18.028 -07 000000551 INF: FPGA: Recv ZDACR 29429
17-03-17 22:08:18.038 -07 000000433 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:08:18.038 -07 000000433 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 22:08:18.038 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:08:18.338 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.000345,
17-03-17 22:08:18.408 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 22:08:18.418 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 388 ms overall
17-03-17 22:08:18.448 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:18.448 -07 000000547 INF: FPGA: Recv YRDPOS 151568
17-03-17 22:08:18.458 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:08:18.458 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:18.458 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 22:08:18.458 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.846 mm, average velocity = 2.176 mm/sec
17-03-17 22:08:19.408 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:19.408 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:08:19.418 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:19.418 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:19.428 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:19.428 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 22:08:19.428 -07 000000561 INF: Y Motor: Moved to 74.0083 after 2616 ms (table move)
17-03-17 22:08:19.438 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134717 mm (DAC = 29429)
17-03-17 22:08:19.438 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.438 -07 000000551 INF: FPGA: Recv ZSGSRD 30260
17-03-17 22:08:19.448 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 22:08:19.448 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.448 -07 000000512 INF: FPGA: Recv ZSGSRD 30259
17-03-17 22:08:19.458 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.458 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.458 -07 000000433 INF: FPGA: Recv ZSGSRD 30265
17-03-17 22:08:19.468 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.488 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.488 -07 000000476 INF: FPGA: Recv ZSGSRD 30257
17-03-17 22:08:19.498 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:08:19.508 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30259
17-03-17 22:08:19.518 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 22:08:19.518 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.518 -07 000000462 INF: FPGA: Recv ZSGSRD 30257
17-03-17 22:08:19.528 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.548 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.548 -07 000000547 INF: FPGA: Recv ZSGSRD 30263
17-03-17 22:08:19.558 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 22:08:19.558 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.558 -07 000000475 INF: FPGA: Recv ZSGSRD 30263
17-03-17 22:08:19.568 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.568 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.568 -07 000000480 INF: FPGA: Recv ZSGSRD 30254
17-03-17 22:08:19.578 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.578 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:19.578 -07 000000547 INF: FPGA: Recv ZSGSRD 30256
17-03-17 22:08:19.588 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.588 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:19.588 -07 000000512 INF: FPGA: Recv ZPIEZORD 26298
17-03-17 22:08:19.598 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:19.598 -07 000000486 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -8.7 V.
17-03-17 22:08:19.598 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30259 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30259 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30254 (-133.9 uncal um), Max = 30265 (-134.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:08:19.598 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30259, posNoise = 6, negNoise = 5
17-03-17 22:08:19.598 -07 000000486 INF: Z Motor: After move to -0.134717, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:19.598 -07 000000486 INF: Z Motor: Settle wait time = 1940 ms, measure time = 159 ms (allowed 150 ms), total time = 2099 ms
17-03-17 22:08:19.598 -07 000000486 INF: Z Motor: Warning: Actual position measuring time = 159 ms, longer than max expected time of 150 ms
17-03-17 22:08:19.598 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2900 ms
17-03-17 22:08:19.598 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:08:19.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:19.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:19.598 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:19.598 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:19.598 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:08:19.598 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:19.598 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:19.598 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:08:19.608 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:08:19.608 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:08:19.618 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 22:08:19.618 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 22:08:19.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:08:19.668 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:08:19.868 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:08:19.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:08:19.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:08:19.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 22:08:19.908 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:08:19.908 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 22:08:19.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 22:08:19.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 22:08:19.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:19.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:08:19.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:08:20.008 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:20.008 -07 000000382 INF: Autofocus start
17-03-17 22:08:20.008 -07 000000382 INF: MeasureProfile start
17-03-17 22:08:20.008 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:20.018 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 22:08:20.018 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:08:20.018 -07 000000382 INF: MeasureProfile done
17-03-17 22:08:20.018 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 22:08:20.018 -07 000000382 INF: Autofocus finished
17-03-17 22:08:20.218 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:08:20.218 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 22:08:20.218 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13471358720868. ----------
17-03-17 22:08:20.228 -07 000000610 INF: Cycle	59	Tile	18	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:08:20.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27936, sync = True, waitForSettling = True)
17-03-17 22:08:20.228 -07 000000610 INF: Z Motor: Moving to -0.127883 mm, started at -0.134714 mm, distance = 6.83 um
17-03-17 22:08:20.228 -07 000000610 INF: FPGA: Xmit ZDACW 27936\n [Z Motor]
17-03-17 22:08:20.228 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 22:08:20.238 -07 000000610 INF: FPGA: 'ZDACW 27936' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:08:20.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:20.238 -07 000000462 INF: FPGA: Recv ZDACR 27936
17-03-17 22:08:20.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:08:20.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.398 -07 000000480 INF: FPGA: Recv ZSGSRD 29199
17-03-17 22:08:20.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:20.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.408 -07 000000458 INF: FPGA: Recv ZSGSRD 29198
17-03-17 22:08:20.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29194
17-03-17 22:08:20.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.428 -07 000000475 INF: FPGA: Recv ZSGSRD 29200
17-03-17 22:08:20.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.438 -07 000000433 INF: FPGA: Recv ZSGSRD 29195
17-03-17 22:08:20.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29196
17-03-17 22:08:20.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.458 -07 000000551 INF: FPGA: Recv ZSGSRD 29199
17-03-17 22:08:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29193
17-03-17 22:08:20.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.478 -07 000000433 INF: FPGA: Recv ZSGSRD 29202
17-03-17 22:08:20.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:20.488 -07 000000561 INF: FPGA: Recv ZSGSRD 29195
17-03-17 22:08:20.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:20.498 -07 000000480 INF: FPGA: Recv ZPIEZORD 24857
17-03-17 22:08:20.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:20.508 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.5 V.
17-03-17 22:08:20.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29197 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29197 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29193 (-127.1 uncal um), Max = 29202 (-127.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:08:20.508 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29197, posNoise = 5, negNoise = 4
17-03-17 22:08:20.508 -07 000000610 INF: Z Motor: After move to -0.127883, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:20.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 22:08:20.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:20.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:20.508 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:20.508 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:20.508 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:08:20.508 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:20.508 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:08:20.508 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:08:20.508 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:20.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:08:20.508 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:08:20.508 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:08:20.518 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:08:20.518 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:08:20.518 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 22:08:20.518 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:08:20.528 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 22:08:20.528 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:08:20.528 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 22:08:20.528 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:08:20.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28113 150\n [Camera]
17-03-17 22:08:20.728 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:08:21.178 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:08:21.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:08:21.178 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:21.178 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:08:21.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:08:21.178 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:21.188 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:21.188 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 22:08:21.188 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:21.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 22:08:21.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28113 830
17-03-17 22:08:21.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 980
17-03-17 22:08:21.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 22:08:21.578 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 22:08:21.578 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:21.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 22:08:21.578 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 22:08:21.588 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:21.588 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 22:08:21.588 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:21.588 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:21.598 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 22:08:21.738 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:08:21.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:08:21.738 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:21.738 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:08:21.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:08:21.738 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:21.858 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:21.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 22:08:21.858 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:21.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 22:08:21.928 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1387
17-03-17 22:08:21.928 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:08:21.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28113 150' command took 2 ms to send, 1383 ms to get response, and 1393 ms overall
17-03-17 22:08:21.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 22:08:21.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12789107391413. ------
17-03-17 22:08:21.928 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13435 mm
17-03-17 22:08:21.928 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 22:08:21.928 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:22.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 22:08:22.238 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 22:08:22.238 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:22.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 22:08:22.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 22:08:22.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:22.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 22:08:22.238 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 22:08:22.248 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:22.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 22:08:22.258 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 22:08:22.258 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 22:08:22.258 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:22.258 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:22.258 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:22.258 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 329 ms to get response, and 330 ms overall
17-03-17 22:08:22.268 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-17 22:08:22.268 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:22.268 -07 000000438 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:22.268 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 22:08:22.268 -07 000000438 INF: Y Motor: Moving 1351 steps-30
17-03-17 22:08:22.268 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:22.268 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 22:08:22.268 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29348, sync = True, waitForSettling = False)
17-03-17 22:08:22.268 -07 000000561 INF: Z Motor: Moving to -0.134347 mm, started at -0.127891 mm, distance = -6.46 um
17-03-17 22:08:22.278 -07 000000561 INF: FPGA: Xmit ZDACW 29348\n [Z Motor]
17-03-17 22:08:22.288 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 22:08:23.228 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 22:08:23.228 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 22:08:23.228 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 22:08:23.228 -07 000000561 INF: FPGA: 'ZDACW 29348' command took 0 ms to send, 940 ms to get response, and 958 ms overall
17-03-17 22:08:23.228 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:23.228 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 950 ms to get response, and 960 ms overall
17-03-17 22:08:23.228 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 930 ms to get response, and 959 ms overall
17-03-17 22:08:23.228 -07 000000480 INF: FPGA: Recv ZDACR 29348
17-03-17 22:08:23.238 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:23.238 -07 000000561 INF: Z Motor: MoveAbsStepped took 968 ms (did NOT wait for settling yet))
17-03-17 22:08:23.248 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:23.258 -07 000000576 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:08:23.258 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 22:08:23.258 -07 000000438 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:23.258 -07 000000438 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 22:08:23.258 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 961 ms, distance = 0.844 mm, average velocity = 0.879 mm/sec
17-03-17 22:08:23.698 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.027603,
17-03-17 22:08:24.208 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 22:08:24.208 -07 000000480 INF: FPGA: Recv YRDPOS 153257
17-03-17 22:08:24.218 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.218 -07 000000438 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 22:08:24.228 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 22:08:24.228 -07 000000438 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 22:08:24.228 -07 000000438 INF: Y Motor: Moved to 74.8325 after 1976 ms (table move)
17-03-17 22:08:24.238 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134347 mm (DAC = 29348)
17-03-17 22:08:24.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.238 -07 000000480 INF: FPGA: Recv ZSGSRD 30206
17-03-17 22:08:24.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 22:08:24.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.248 -07 000000448 INF: FPGA: Recv ZSGSRD 30200
17-03-17 22:08:24.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.258 -07 000000438 INF: FPGA: Recv ZSGSRD 30200
17-03-17 22:08:24.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.268 -07 000000561 INF: FPGA: Recv ZSGSRD 30199
17-03-17 22:08:24.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.278 -07 000000623 INF: FPGA: Recv ZSGSRD 30207
17-03-17 22:08:24.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.288 -07 000000424 INF: FPGA: Recv ZSGSRD 30206
17-03-17 22:08:24.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30200
17-03-17 22:08:24.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.308 -07 000000424 INF: FPGA: Recv ZSGSRD 30205
17-03-17 22:08:24.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30202
17-03-17 22:08:24.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.328 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:24.328 -07 000000561 INF: FPGA: Recv ZSGSRD 30201
17-03-17 22:08:24.338 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.338 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:24.338 -07 000000576 INF: FPGA: Recv ZPIEZORD 26229
17-03-17 22:08:24.348 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:24.348 -07 000000433 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.8 V.
17-03-17 22:08:24.348 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30203 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30202 (-133.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30199 (-133.5 uncal um), Max = 30207 (-133.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 22:08:24.348 -07 000000433 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30203, posNoise = 4, negNoise = 4
17-03-17 22:08:24.348 -07 000000433 INF: Z Motor: After move to -0.134347, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:24.348 -07 000000433 INF: Z Motor: Settle wait time = 1970 ms, measure time = 109 ms (allowed 150 ms), total time = 2079 ms
17-03-17 22:08:24.348 -07 000000433 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 22:08:24.398 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2461 ms
17-03-17 22:08:24.398 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 22:08:24.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:24.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:24.398 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:24.398 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:24.398 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 22:08:24.398 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:24.408 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:24.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 22:08:24.408 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 22:08:24.408 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 22:08:24.418 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 22:08:24.418 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 22:08:24.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 22:08:24.468 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 22:08:24.668 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 22:08:24.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 22:08:24.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 22:08:24.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 22:08:24.698 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 22:08:24.708 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 22:08:24.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 22:08:24.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 22:08:24.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:24.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 22:08:24.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 22:08:24.808 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 22:08:24.808 -07 000000547 INF: Autofocus start
17-03-17 22:08:24.808 -07 000000547 INF: MeasureProfile start
17-03-17 22:08:24.808 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 22:08:24.818 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 22:08:24.818 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 22:08:24.818 -07 000000547 INF: MeasureProfile done
17-03-17 22:08:24.818 -07 000000547 INF: X=10  Z correction [um]=0.02415557
17-03-17 22:08:24.818 -07 000000547 INF: Autofocus finished
17-03-17 22:08:25.018 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 22:08:25.018 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 22:08:25.028 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134353831328741. ----------
17-03-17 22:08:25.028 -07 000000610 INF: Cycle	59	Tile	19	Exposure Settings		A	445	G	214	T	214	C	445
17-03-17 22:08:25.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27866, sync = True, waitForSettling = True)
17-03-17 22:08:25.028 -07 000000610 INF: Z Motor: Moving to -0.127562 mm, started at -0.134354 mm, distance = 6.79 um
17-03-17 22:08:25.028 -07 000000610 INF: FPGA: Xmit ZDACW 27866\n [Z Motor]
17-03-17 22:08:25.028 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 22:08:25.038 -07 000000610 INF: FPGA: 'ZDACW 27866' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 22:08:25.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 22:08:25.038 -07 000000438 INF: FPGA: Recv ZDACR 27866
17-03-17 22:08:25.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 22:08:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.198 -07 000000448 INF: FPGA: Recv ZSGSRD 29150
17-03-17 22:08:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 22:08:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29150
17-03-17 22:08:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.218 -07 000000623 INF: FPGA: Recv ZSGSRD 29143
17-03-17 22:08:25.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29152
17-03-17 22:08:25.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.238 -07 000000623 INF: FPGA: Recv ZSGSRD 29145
17-03-17 22:08:25.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29149
17-03-17 22:08:25.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29151
17-03-17 22:08:25.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.268 -07 000000480 INF: FPGA: Recv ZSGSRD 29147
17-03-17 22:08:25.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.278 -07 000000480 INF: FPGA: Recv ZSGSRD 29146
17-03-17 22:08:25.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 22:08:25.288 -07 000000433 INF: FPGA: Recv ZSGSRD 29149
17-03-17 22:08:25.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 22:08:25.298 -07 000000438 INF: FPGA: Recv ZPIEZORD 24830
17-03-17 22:08:25.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 22:08:25.308 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.252 V. Piezo Error = -9.5 V.
17-03-17 22:08:25.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29148 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29149 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29143 (-126.8 uncal um), Max = 29152 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 22:08:25.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29148, posNoise = 4, negNoise = 5
17-03-17 22:08:25.308 -07 000000610 INF: Z Motor: After move to -0.127562, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 22:08:25.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 22:08:25.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 22:08:25.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 22:08:25.308 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 22:08:25.308 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 22:08:25.308 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 22:08:25.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 22:08:25.308 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 22:08:25.308 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 22:08:25.308 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 22:08:25.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 22:08:25.308 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 22:08:25.308 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 22:08:25.318 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 22:08:25.318 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 22:08:25.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 22:08:25.318 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 22:08:25.328 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 22:08:25.328 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 22:08:25.328 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 22:08:25.328 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 22:08:25.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 445 445 214 214 28043 150\n [Camera]
17-03-17 22:08:25.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 22:08:25.978 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 637
17-03-17 22:08:25.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 637
17-03-17 22:08:25.978 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:25.978 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 637
17-03-17 22:08:25.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 637
17-03-17 22:08:25.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:25.978 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:25.988 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) start.
17-03-17 22:08:25.988 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:25.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 22:08:26.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28043 830
17-03-17 22:08:26.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 981
17-03-17 22:08:26.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 22:08:26.378 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 22:08:26.378 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:26.388 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:26.388 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 22:08:26.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 22:08:26.388 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 22:08:26.388 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:26.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:26.398 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 22:08:26.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1194
17-03-17 22:08:26.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1194
17-03-17 22:08:26.538 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 22:08:26.538 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 22:08:26.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 22:08:26.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1194
17-03-17 22:08:26.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1194
17-03-17 22:08:26.538 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 22:08:26.538 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 22:08:26.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 22:08:26.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1386
17-03-17 22:08:26.728 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 22:08:26.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 445 445 214 214 28043 150' command took 2 ms to send, 1383 ms to get response, and 1394 ms overall
17-03-17 22:08:26.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 22:08:26.938 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 22:08:26.938 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 22:08:26.938 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:26.938 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 22:08:26.938 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 22:08:26.948 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 22:08:26.948 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 58. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=930, R2=952, Total=1882. Warn if over 250 bubbles per interval.
17-03-17 22:08:26.948 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 22:08:26.948 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 22:08:26.948 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 22:08:26.948 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 22:08:26.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 22:08:26.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 22:08:26.998 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 22:08:27.038 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 22:08:27.048 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 22:08:27.048 -07 000000610 INF: Imaging Cycle 59: ScanTilesCommand Cycle 59 time end. Duration was 168334 ms.
17-03-17 22:08:27.048 -07 000000610 INF: =================== Cycle #59 ===================
17-03-17 22:08:27.048 -07 000000610 INF: ===================  ===================
17-03-17 22:08:27.048 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 22:08:27.078 -07 000000623 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 22:08:27.078 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 22:08:27.078 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 22:08:27.078 -07 000000438 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 59, FrontChillerTemperature: 4.027603, FrontChillerHeatSinkTemperature: 0.200294, AmbientTemperature: 19.01852, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.80026, GreenLEDSensorTemperature: 26.3537, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 22:08:27.228 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.