17-03-17 17:44:41.278 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:44:41.288 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:44:41.288 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 17:44:41.288 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:41.288 -07 000000569 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:44:41.298 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:41.298 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:41.298 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 17:44:41.298 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:44:41.298 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:44:41.408 -07 000000480 INF: FPGA: Recv YMVTO 154377 872
17-03-17 17:44:41.408 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 17:44:41.408 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 17:44:41.408 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (0.00%).
17-03-17 17:44:41.408 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 17:44:41.528 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:41.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:42.558 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.993549,
17-03-17 17:44:44.408 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:44.408 -07 000000480 INF: FPGA: Recv YRDPOS 154382
17-03-17 17:44:44.418 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:44.418 -07 000000610 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:44.428 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.001256, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:44.428 -07 000000610 INF: Y Motor: Position error after settling = 3 encoder counts (0.001 mm), Delta during settling = 5 counts (0.002 mm)
17-03-17 17:44:44.428 -07 000000610 INF: Y Motor: Moved to 75.3818 after 3143 ms
17-03-17 17:44:44.438 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 60° ===================
17-03-17 17:44:44.438 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:44:44.438 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:44:44.438 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:44:44.448 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:44.448 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:44:44.448 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-17 17:44:44.458 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:44.458 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 60° ===================
17-03-17 17:44:44.458 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:44:44.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:44:44.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:44:44.488 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:44:44.488 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 17:44:44.488 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:44:44.788 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:44:44.808 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:44:44.808 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:44:44.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:44:44.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:44:44.878 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:44:44.978 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:44:44.978 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:44:44.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:45.008 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:44:45.008 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:44:45.008 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:44:45.138 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:44:45.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:44:46.528 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:47.918 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.943091,
17-03-17 17:44:48.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:48.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:44:48.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:48.788 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:44:49.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:49.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:49.238 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:44:49.238 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:44:49.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:49.398 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:44:49.398 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:44:49.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:49.558 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:44:49.558 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:44:49.558 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:44:49.688 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:44:49.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:50.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:50.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:50.178 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:44:50.178 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:44:51.398 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:44:51.398 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:44:51.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:44:51.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:44:51.418 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 17:44:51.418 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:44:51.528 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 17:44:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:44:51.548 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:44:51.568 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 17:44:51.568 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 17:44:51.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:44:51.638 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:44:51.638 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:44:51.738 -07 000000610 INF: =================== Cycle #5, Pumping Reagent CMS (4) ===================
17-03-17 17:44:51.738 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:44:51.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:51.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:44:51.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:44:51.778 -07 000000610 INF: =================== Cycle #5, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:44:51.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:44:51.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:44:53.278 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.015368,
17-03-17 17:44:53.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:54.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:44:54.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:54.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:54.548 -07 000000610 INF: LanePump: Waited 2599 ms for pump motion to complete
17-03-17 17:44:54.548 -07 000000610 INF: =================== Cycle #5, Pumping Reagent CMS (4) ===================
17-03-17 17:44:54.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:54.708 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:44:54.708 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:44:54.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:54.868 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:44:54.868 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:44:54.868 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:44:54.998 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:44:55.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:55.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:55.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:55.488 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:44:55.488 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:44:56.528 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:56.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:44:56.708 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:44:56.708 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:44:56.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:44:56.728 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:44:56.728 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:44:56.728 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:44:56.878 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:44:56.898 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:44:56.898 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:44:56.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:44:56.968 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:44:56.968 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:44:57.068 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:44:57.068 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:44:57.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:57.098 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:44:57.098 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:44:57.098 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:44:57.228 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:44:57.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:44:58.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:58.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:58.168 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:44:58.168 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:44:58.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:58.328 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:44:58.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:44:58.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:44:58.488 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:44:58.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:44:58.488 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:44:58.618 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:44:58.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:59.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:44:59.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:44:59.108 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:44:59.108 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:44:59.108 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:44:59.108 -07 000000618 INF: WaitCommand(10000) start
17-03-17 17:44:59.108 -07 000000382 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:44:59.428 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.989471,
17-03-17 17:45:00.328 -07 000000382 INF: AsyncDelayTimer waited 1215ms
17-03-17 17:45:00.328 -07 000000382 INF: LanePump: Xmit /1?\r
17-03-17 17:45:00.358 -07 000000382 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:45:00.358 -07 000000382 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:45:00.488 -07 000000382 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:45:00.528 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:01.528 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:01.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:02.058 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:02.088 -07 000000382 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:02.508 -07 000000382 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:02.768 -07 000000382 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:02.768 -07 000000382 INF: LanePump: Waited 2239 ms for pump motion to complete
17-03-17 17:45:02.768 -07 000000382 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:45:02.768 -07 000000382 INF: ===================  ===================
17-03-17 17:45:04.798 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.963579,
17-03-17 17:45:06.528 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:06.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:09.118 -07 000000618 INF: WaitCommand(10000) end
17-03-17 17:45:09.118 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:45:09.118 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:45:09.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:09.148 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:45:09.148 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:45:09.148 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:45:09.278 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:45:09.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:10.178 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.964938,
17-03-17 17:45:11.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:15.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:15.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:15.548 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.956714,
17-03-17 17:45:15.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:15.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:16.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:16.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:16.528 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:16.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:16.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:16.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:17.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:17.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:17.278 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:45:17.278 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:45:17.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:17.438 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:45:17.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:45:17.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:17.598 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:45:17.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:45:17.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:45:17.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:45:17.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:18.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:18.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:18.218 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:45:18.218 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:45:19.438 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:45:19.438 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:45:19.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:45:19.458 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:45:19.458 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:45:19.458 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:45:19.668 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:45:19.688 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:45:19.688 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:45:19.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:45:19.758 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:45:19.758 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:45:19.858 -07 000000610 INF: =================== Cycle #5, Pumping Reagent IMT (1) ===================
17-03-17 17:45:19.858 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:45:19.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:19.898 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:45:19.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:45:19.898 -07 000000610 INF: =================== Cycle #5, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:45:20.028 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:45:20.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:20.908 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.981281,
17-03-17 17:45:21.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:21.528 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:21.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:21.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:21.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:21.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:21.988 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:45:21.988 -07 000000610 INF: =================== Cycle #5, Pumping Reagent IMT (1) ===================
17-03-17 17:45:22.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:22.148 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:45:22.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:45:22.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:22.308 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:45:22.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:45:22.308 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:45:22.438 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:45:22.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:22.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:22.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:22.928 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:45:22.928 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:45:24.148 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:45:24.148 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:45:24.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:45:24.168 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:45:24.168 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:45:24.168 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:45:24.398 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:45:24.418 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:45:24.418 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:45:24.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:45:24.488 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:45:24.488 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:45:24.588 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:45:24.588 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:45:24.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:24.618 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:45:24.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:45:24.618 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:45:24.748 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:45:24.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:25.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:25.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:25.698 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:45:25.698 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:45:25.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:25.858 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:45:25.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:45:25.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:26.018 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:45:26.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:45:26.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:45:26.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:45:26.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:26.288 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.994908,
17-03-17 17:45:26.528 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:26.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:26.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:26.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:26.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:45:26.638 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:45:26.638 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 65° ===================
17-03-17 17:45:26.638 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:45:26.638 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:45:26.638 -07 000000627 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:45:26.648 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:45:26.648 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:45:26.648 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-17 17:45:26.658 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:45:26.658 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 65° ===================
17-03-17 17:45:26.658 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:45:26.658 -07 000000610 INF: WaitCommand(30000) start
17-03-17 17:45:31.528 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:31.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:31.648 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.018051,
17-03-17 17:45:36.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:36.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:37.018 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.985358,
17-03-17 17:45:41.528 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:41.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:42.388 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.994908,
17-03-17 17:45:46.528 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:47.758 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.969015,
17-03-17 17:45:51.528 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:53.128 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.986717,
17-03-17 17:45:56.528 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:45:56.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:45:56.668 -07 000000610 INF: WaitCommand(30000) end
17-03-17 17:45:56.668 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:45:56.668 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 17:45:56.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:56.798 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:45:56.798 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:45:56.798 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:45:56.928 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 17:45:56.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:45:57.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:57.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:57.538 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 17:45:57.538 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:45:57.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:57.698 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:45:57.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:45:57.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:45:57.858 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:45:57.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:45:57.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:45:57.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:45:58.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:58.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:45:58.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:45:58.478 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:45:58.478 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:45:58.478 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:45:58.478 -07 000000618 INF: WaitCommand(30000) start
17-03-17 17:45:58.478 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:45:58.498 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.001704,
17-03-17 17:45:59.698 -07 000000627 INF: AsyncDelayTimer waited 1215ms
17-03-17 17:45:59.698 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 17:45:59.728 -07 000000627 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:45:59.728 -07 000000627 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:45:59.858 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:45:59.898 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:01.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:01.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:46:02.238 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:02.268 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:02.688 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:02.718 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:02.718 -07 000000627 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 17:46:02.718 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:46:02.718 -07 000000627 INF: ===================  ===================
17-03-17 17:46:03.858 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.983999,
17-03-17 17:46:06.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:06.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:46:09.218 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.004458,
17-03-17 17:46:11.528 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:46:14.578 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.993549,
17-03-17 17:46:16.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:16.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:46:19.938 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.000345,
17-03-17 17:46:21.528 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:21.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:46:25.298 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.974486,
17-03-17 17:46:26.528 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:26.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=39, R2=46, Total=85. Warn if over 250 bubbles per interval.
17-03-17 17:46:28.488 -07 000000618 INF: WaitCommand(30000) end
17-03-17 17:46:28.488 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 22° ===================
17-03-17 17:46:28.488 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 17:46:28.488 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 17:46:28.488 -07 000000438 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:46:28.498 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:46:28.498 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:46:28.498 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 17:46:28.508 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:28.508 -07 000000610 INF: =================== Cycle #5, Flow Cell Temp 22° ===================
17-03-17 17:46:28.508 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:46:28.508 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:46:28.508 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:46:28.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:28.548 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:46:28.548 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:46:28.548 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:46:28.678 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:46:28.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:30.658 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.986717,
17-03-17 17:46:31.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 17:46:31.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:46:31.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:31.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:32.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:32.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:32.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:32.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:32.778 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:46:32.778 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:46:32.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:32.938 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:46:32.938 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:46:33.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:33.098 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:46:33.098 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:46:33.098 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:46:33.228 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:46:33.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:33.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:33.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:33.718 -07 000000610 INF: LanePump: Waited 458 ms for pump motion to complete
17-03-17 17:46:33.718 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:46:34.938 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:46:34.938 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:46:34.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:46:34.958 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:46:34.958 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 17:46:34.958 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 17:46:35.108 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:46:35.128 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:46:35.128 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:46:35.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:46:35.198 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:46:35.198 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:46:35.298 -07 000000610 INF: =================== Cycle #5, Pumping Reagent USM (2) ===================
17-03-17 17:46:35.298 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:46:35.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:35.328 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:46:35.328 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:46:35.328 -07 000000610 INF: =================== Cycle #5, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:46:35.458 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:46:35.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:36.018 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.977204,
17-03-17 17:46:36.528 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:36.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:46:36.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:36.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:37.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:37.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:37.418 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:46:37.418 -07 000000610 INF: =================== Cycle #5, Pumping Reagent USM (2) ===================
17-03-17 17:46:37.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:37.578 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:46:37.578 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:46:37.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:37.738 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:46:37.738 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:46:37.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:46:37.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:46:37.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:38.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:38.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:38.358 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:46:38.358 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:46:39.578 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:46:39.578 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:46:39.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:46:39.598 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:46:39.598 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 17:46:39.598 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:46:39.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:46:39.768 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:46:39.768 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:46:39.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:46:39.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:46:39.838 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:46:39.938 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:46:39.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:46:39.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:39.968 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:46:39.968 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:46:39.968 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:46:40.098 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:46:40.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:41.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:41.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:41.038 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:46:41.038 -07 000000610 INF: =================== Cycle #5, Pumping Reagent PR2 (3) ===================
17-03-17 17:46:41.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:41.198 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:46:41.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:46:41.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:46:41.358 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:46:41.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:46:41.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:46:41.378 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.99219,
17-03-17 17:46:41.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:46:41.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:41.528 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:41.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:46:41.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:41.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:41.978 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:46:41.978 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:46:41.978 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:46:41.978 -07 000000438 INF: WaitCommand(10000) start
17-03-17 17:46:41.978 -07 000000476 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:46:43.198 -07 000000476 INF: AsyncDelayTimer waited 1214ms
17-03-17 17:46:43.198 -07 000000476 INF: LanePump: Xmit /1?\r
17-03-17 17:46:43.228 -07 000000476 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:46:43.228 -07 000000476 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:46:43.358 -07 000000476 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:46:43.398 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:44.928 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:44.958 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:46:45.378 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 17:46:45.408 -07 000000476 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:46:45.408 -07 000000476 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:46:45.408 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:46:45.408 -07 000000476 INF: ===================  ===================
17-03-17 17:46:46.528 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:46:46.738 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.016692,
17-03-17 17:46:51.528 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:46:51.988 -07 000000438 INF: WaitCommand(10000) end
17-03-17 17:46:51.988 -07 000000610 INF: =================== Cycle #5, Imaging ===================
17-03-17 17:46:51.988 -07 000000610 INF: Imaging Cycle 5: ScanTilesCommand Cycle 5 time start.
17-03-17 17:46:51.998 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 17:46:51.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:46:52.018 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:46:52.018 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 17:46:52.018 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 17:46:52.098 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.978563,
17-03-17 17:46:52.318 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:46:52.338 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:46:52.338 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:46:52.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:46:52.408 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:46:52.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:46:52.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:46:52.408 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 17:46:52.408 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:46:52.408 -07 000000382 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:46:52.418 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-17 17:46:52.418 -07 000000382 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:46:52.418 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:46:52.418 -07 000000475 INF: FPGA: Recv EXLED1ADCR 23182
17-03-17 17:46:52.428 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:46:52.428 -07 000000382 INF: RedLED: Using Red data: Photodiode ADC 23182 --> 7.4 mW (old method), or 205.5 mW (new method). Difference = 198.0 mW
17-03-17 17:46:52.428 -07 000000382 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:46:52.428 -07 000000547 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:46:52.438 -07 000000382 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:52.438 -07 000000382 INF: RedLED: LED was on for 19 ms
17-03-17 17:46:52.438 -07 000000382 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 17:46:52.438 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 17:46:52.438 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:46:52.438 -07 000000382 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:46:52.438 -07 000000547 INF: FPGA: Recv EXLED2ON 
17-03-17 17:46:52.448 -07 000000382 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:46:52.448 -07 000000382 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:46:52.448 -07 000000448 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 17:46:52.458 -07 000000382 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:52.458 -07 000000382 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 17:46:52.458 -07 000000382 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:46:52.458 -07 000000448 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:46:52.468 -07 000000382 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:52.468 -07 000000382 INF: GreenLED: LED was on for 19 ms
17-03-17 17:46:52.468 -07 000000382 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 17:46:52.468 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:46:52.468 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 17:46:52.478 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:46:52.478 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:46:52.978 -07 000000382 INF: FPGA: Recv EMOUT
17-03-17 17:46:52.978 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 1 ms to send, 494 ms to get response, and 503 ms overall
17-03-17 17:46:52.998 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:46:52.998 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-17 17:46:53.008 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:46:53.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:46:53.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3818359375, Z-Position -0.127171562154252. ------
17-03-17 17:46:53.008 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17866 mm
17-03-17 17:46:53.008 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:46:53.018 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:46:53.888 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:46:53.888 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 860 ms to get response, and 875 ms overall
17-03-17 17:46:53.888 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:46:53.888 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 75.3818 mm, delta = -15.4692 mm
17-03-17 17:46:53.898 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:46:53.908 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:46:54.418 -07 000000608 INF: FPGA: Recv YRDPOS 154382
17-03-17 17:46:54.418 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:46:54.418 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 510 ms to get response, and 528 ms overall
17-03-17 17:46:54.418 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 500 ms to get response, and 529 ms overall
17-03-17 17:46:54.418 -07 000000438 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:46:54.418 -07 000000438 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 17:46:54.418 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:46:54.418 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:46:54.418 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39029, sync = True, waitForSettling = False)
17-03-17 17:46:54.418 -07 000000608 INF: Z Motor: Moving to -0.178663 mm, started at -0.127172 mm, distance = -51.49 um
17-03-17 17:46:54.428 -07 000000608 INF: FPGA: Xmit ZDACW 39029\n [Z Motor]
17-03-17 17:46:54.428 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 17:46:54.438 -07 000000608 INF: FPGA: 'ZDACW 39029' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:46:54.438 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:46:54.438 -07 000000547 INF: FPGA: Recv ZDACR 39029
17-03-17 17:46:54.448 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:54.448 -07 000000608 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 17:46:56.098 -07 000000608 INF: FPGA: Recv YMVTO 122702 24776
17-03-17 17:46:56.098 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1679 ms to get response, and 1686 ms overall
17-03-17 17:46:56.098 -07 000000438 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:46:56.108 -07 000000438 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 17:46:56.108 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1686 ms, distance = 15.469 mm, average velocity = 9.175 mm/sec
17-03-17 17:46:56.528 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:46:56.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:46:57.458 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.966297,
17-03-17 17:46:58.958 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:46:58.958 -07 000000608 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:46:58.968 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:58.968 -07 000000438 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:46:58.988 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:46:58.988 -07 000000438 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 17:46:58.988 -07 000000438 INF: Y Motor: Moved to 59.9116 after 5098 ms
17-03-17 17:46:58.988 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178663 mm (DAC = 39029)
17-03-17 17:46:58.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:58.988 -07 000000547 INF: FPGA: Recv ZSGSRD 37102
17-03-17 17:46:58.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:46:58.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:58.998 -07 000000438 INF: FPGA: Recv ZSGSRD 37099
17-03-17 17:46:59.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.008 -07 000000475 INF: FPGA: Recv ZSGSRD 37106
17-03-17 17:46:59.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.018 -07 000000448 INF: FPGA: Recv ZSGSRD 37094
17-03-17 17:46:59.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.028 -07 000000438 INF: FPGA: Recv ZSGSRD 37099
17-03-17 17:46:59.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.038 -07 000000547 INF: FPGA: Recv ZSGSRD 37106
17-03-17 17:46:59.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.048 -07 000000608 INF: FPGA: Recv ZSGSRD 37109
17-03-17 17:46:59.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.058 -07 000000547 INF: FPGA: Recv ZSGSRD 37096
17-03-17 17:46:59.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.068 -07 000000618 INF: FPGA: Recv ZSGSRD 37099
17-03-17 17:46:59.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.078 -07 000000547 INF: FPGA: Recv ZSGSRD 37099
17-03-17 17:46:59.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.088 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:46:59.088 -07 000000476 INF: FPGA: Recv ZPIEZORD 33372
17-03-17 17:46:59.098 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.098 -07 000000382 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.955 V. Piezo Error = -8.3 V.
17-03-17 17:46:59.098 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37101 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37099 (-177.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37094 (-177.7 uncal um), Max = 37109 (-177.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:46:59.098 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37101, posNoise = 8, negNoise = 7
17-03-17 17:46:59.098 -07 000000382 INF: Z Motor: After move to -0.178663, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:46:59.098 -07 000000382 INF: Z Motor: Settle wait time = 4569 ms, measure time = 107 ms (allowed 150 ms), total time = 4676 ms
17-03-17 17:46:59.098 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:46:59.148 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 6134 ms
17-03-17 17:46:59.148 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:46:59.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:46:59.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:46:59.148 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:46:59.148 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:46:59.148 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:46:59.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:46:59.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:46:59.158 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:46:59.178 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 17:46:59.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:46:59.178 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:46:59.178 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:46:59.188 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:46:59.188 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 33 ms.
17-03-17 17:46:59.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:46:59.238 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:46:59.438 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:46:59.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:46:59.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:46:59.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:46:59.478 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:46:59.478 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:46:59.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:46:59.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 17:46:59.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:46:59.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:46:59.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 17:46:59.578 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:46:59.578 -07 000000547 INF: Image SNR check: start
17-03-17 17:46:59.578 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:46:59.588 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:46:59.588 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:46:59.588 -07 000000547 INF: Image SNR check: pass  [peak (Max-Min)=72.86]
17-03-17 17:46:59.588 -07 000000547 INF: Autofocus start
17-03-17 17:46:59.588 -07 000000547 INF: MeasureProfile start
17-03-17 17:46:59.608 -07 000000547 INF: MeasureProfile done
17-03-17 17:46:59.608 -07 000000547 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:46:59.608 -07 000000547 INF: Autofocus finished
17-03-17 17:46:59.788 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:46:59.788 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:46:59.788 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.178668046682608. ----------
17-03-17 17:46:59.788 -07 000000610 INF: Cycle	5	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:46:59.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37579, sync = True, waitForSettling = True)
17-03-17 17:46:59.798 -07 000000610 INF: Z Motor: Moving to -0.172026 mm, started at -0.178668 mm, distance = 6.64 um
17-03-17 17:46:59.798 -07 000000610 INF: FPGA: Xmit ZDACW 37579\n [Z Motor]
17-03-17 17:46:59.798 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:46:59.808 -07 000000610 INF: FPGA: 'ZDACW 37579' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:46:59.808 -07 000000448 INF: FPGA: Recv ZDACR 37579
17-03-17 17:46:59.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:46:59.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.968 -07 000000608 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:46:59.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:46:59.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.978 -07 000000476 INF: FPGA: Recv ZSGSRD 36066
17-03-17 17:46:59.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:46:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:46:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:46:59.998 -07 000000547 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:47:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:00.008 -07 000000475 INF: FPGA: Recv ZSGSRD 36071
17-03-17 17:47:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:00.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:47:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:00.028 -07 000000448 INF: FPGA: Recv ZSGSRD 36074
17-03-17 17:47:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:00.038 -07 000000608 INF: FPGA: Recv ZSGSRD 36071
17-03-17 17:47:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:00.048 -07 000000475 INF: FPGA: Recv ZSGSRD 36067
17-03-17 17:47:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:00.058 -07 000000608 INF: FPGA: Recv ZSGSRD 36069
17-03-17 17:47:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:00.068 -07 000000608 INF: FPGA: Recv ZPIEZORD 31985
17-03-17 17:47:00.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:00.078 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -9.0 V.
17-03-17 17:47:00.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36069 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36066 (-171.1 uncal um), Max = 36074 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:47:00.078 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36069, posNoise = 5, negNoise = 3
17-03-17 17:47:00.078 -07 000000610 INF: Z Motor: After move to -0.172026, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:00.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:47:00.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:00.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:00.078 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:00.078 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:00.078 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:00.078 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:00.078 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:00.078 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:00.078 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:00.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:00.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:00.078 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:47:00.088 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:00.088 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:00.098 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:47:00.098 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:47:00.108 -07 000000438 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 17:47:00.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:00.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:00.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:00.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:47:00.118 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms.
17-03-17 17:47:00.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37756 150\n [Camera]
17-03-17 17:47:00.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 17:47:00.718 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:00.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:00.718 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:00.718 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:00.718 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:47:00.718 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:00.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:00.718 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:00.828 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:00.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:47:00.908 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37756 775
17-03-17 17:47:01.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:01.108 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:47:01.108 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:47:01.108 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:01.118 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:01.118 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:47:01.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:47:01.228 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:47:01.228 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:01.228 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:47:01.238 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 17:47:01.248 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:01.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:01.248 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:01.248 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:01.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:01.248 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:01.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:01.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 17:47:01.268 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:01.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:47:01.438 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:01.438 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:01.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37756 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:47:01.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:01.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.172038259752311. ------
17-03-17 17:47:01.448 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:01.668 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:47:01.668 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:47:01.668 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:01.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:47:01.668 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 17:47:01.668 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:01.668 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:01.678 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:01.678 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 428 ms.
17-03-17 17:47:01.678 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 430 ms.
17-03-17 17:47:01.688 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17825 mm
17-03-17 17:47:01.688 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:01.698 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:01.698 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:01.698 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 240 ms to get response, and 249 ms overall
17-03-17 17:47:01.698 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:01.698 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:01.698 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:47:01.698 -07 000000608 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 17:47:01.708 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:02.658 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38939, sync = True, waitForSettling = False)
17-03-17 17:47:02.658 -07 000000618 INF: Z Motor: Moving to -0.178251 mm, started at -0.172038 mm, distance = -6.21 um
17-03-17 17:47:02.658 -07 000000618 INF: FPGA: Xmit ZDACW 38939\n [Z Motor]
17-03-17 17:47:03.188 -07 000000448 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:47:03.188 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:03.188 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:47:03.188 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1480 ms to get response, and 1489 ms overall
17-03-17 17:47:03.188 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1470 ms to get response, and 1488 ms overall
17-03-17 17:47:03.188 -07 000000608 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:03.188 -07 000000608 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:03.188 -07 000000608 INF: Y Motor: Moving 1330 steps1
17-03-17 17:47:03.188 -07 000000618 INF: FPGA: 'ZDACW 38939' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 17:47:03.188 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:03.198 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:03.198 -07 000000448 INF: FPGA: Recv ZDACR 38939
17-03-17 17:47:03.208 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:47:03.208 -07 000000618 INF: Z Motor: MoveAbsStepped took 548 ms (did NOT wait for settling yet))
17-03-17 17:47:03.498 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.959467,
17-03-17 17:47:03.568 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:47:03.568 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 372 ms to get response, and 381 ms overall
17-03-17 17:47:03.588 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:03.598 -07 000000476 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:47:03.598 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:47:03.598 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:03.598 -07 000000608 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:47:03.598 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.831 mm, average velocity = 2.181 mm/sec
17-03-17 17:47:04.548 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:04.548 -07 000000382 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:47:04.558 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:04.558 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:04.568 -07 000000608 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:04.568 -07 000000608 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:04.568 -07 000000608 INF: Y Motor: Moved to 60.7334 after 2877 ms (table move)
17-03-17 17:47:04.578 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178251 mm (DAC = 38939)
17-03-17 17:47:04.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.578 -07 000000608 INF: FPGA: Recv ZSGSRD 37037
17-03-17 17:47:04.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:04.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.588 -07 000000448 INF: FPGA: Recv ZSGSRD 37037
17-03-17 17:47:04.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.598 -07 000000448 INF: FPGA: Recv ZSGSRD 37034
17-03-17 17:47:04.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.608 -07 000000448 INF: FPGA: Recv ZSGSRD 37027
17-03-17 17:47:04.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.618 -07 000000462 INF: FPGA: Recv ZSGSRD 37035
17-03-17 17:47:04.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.628 -07 000000448 INF: FPGA: Recv ZSGSRD 37039
17-03-17 17:47:04.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.638 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.638 -07 000000448 INF: FPGA: Recv ZSGSRD 37043
17-03-17 17:47:04.648 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.648 -07 000000448 INF: FPGA: Recv ZSGSRD 37038
17-03-17 17:47:04.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.658 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.658 -07 000000608 INF: FPGA: Recv ZSGSRD 37040
17-03-17 17:47:04.668 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:04.668 -07 000000476 INF: FPGA: Recv ZSGSRD 37040
17-03-17 17:47:04.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.678 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:04.678 -07 000000608 INF: FPGA: Recv ZPIEZORD 33277
17-03-17 17:47:04.688 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:04.688 -07 000000547 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.3 V.
17-03-17 17:47:04.688 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37037 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37038 (-177.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37027 (-177.3 uncal um), Max = 37043 (-177.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:47:04.688 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37037, posNoise = 6, negNoise = 10
17-03-17 17:47:04.688 -07 000000547 INF: Z Motor: After move to -0.178251, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:04.688 -07 000000547 INF: Z Motor: Settle wait time = 1921 ms, measure time = 108 ms (allowed 150 ms), total time = 2029 ms
17-03-17 17:47:04.688 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:04.738 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3044 ms
17-03-17 17:47:04.738 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:04.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:04.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:04.738 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:04.738 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:04.738 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:04.738 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:04.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:04.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:04.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:04.748 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:04.758 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:47:04.758 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:47:04.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:04.808 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:05.008 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:05.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:05.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:05.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:05.048 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:05.048 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:05.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:47:05.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:47:05.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:05.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:05.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:47:05.148 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:05.148 -07 000000382 INF: Autofocus start
17-03-17 17:47:05.148 -07 000000382 INF: MeasureProfile start
17-03-17 17:47:05.158 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:05.158 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 17:47:05.158 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:05.158 -07 000000382 INF: MeasureProfile done
17-03-17 17:47:05.158 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:47:05.158 -07 000000382 INF: Autofocus finished
17-03-17 17:47:05.358 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:05.358 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:47:05.358 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178256897105536. ----------
17-03-17 17:47:05.368 -07 000000610 INF: Cycle	5	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:05.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37472, sync = True, waitForSettling = True)
17-03-17 17:47:05.368 -07 000000610 INF: Z Motor: Moving to -0.171536 mm, started at -0.178257 mm, distance = 6.72 um
17-03-17 17:47:05.368 -07 000000610 INF: FPGA: Xmit ZDACW 37472\n [Z Motor]
17-03-17 17:47:05.368 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:47:05.378 -07 000000610 INF: FPGA: 'ZDACW 37472' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:05.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:05.378 -07 000000382 INF: FPGA: Recv ZDACR 37472
17-03-17 17:47:05.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35982
17-03-17 17:47:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.548 -07 000000476 INF: FPGA: Recv ZSGSRD 35994
17-03-17 17:47:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.558 -07 000000476 INF: FPGA: Recv ZSGSRD 35999
17-03-17 17:47:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.568 -07 000000476 INF: FPGA: Recv ZSGSRD 35988
17-03-17 17:47:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.578 -07 000000476 INF: FPGA: Recv ZSGSRD 35993
17-03-17 17:47:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.588 -07 000000476 INF: FPGA: Recv ZSGSRD 35991
17-03-17 17:47:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.598 -07 000000476 INF: FPGA: Recv ZSGSRD 35999
17-03-17 17:47:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.608 -07 000000541 INF: FPGA: Recv ZSGSRD 35993
17-03-17 17:47:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.618 -07 000000541 INF: FPGA: Recv ZSGSRD 35988
17-03-17 17:47:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:05.628 -07 000000476 INF: FPGA: Recv ZSGSRD 35991
17-03-17 17:47:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:05.638 -07 000000476 INF: FPGA: Recv ZPIEZORD 31858
17-03-17 17:47:05.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:05.648 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -9.1 V.
17-03-17 17:47:05.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35992 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35992 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35982 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:47:05.648 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35992, posNoise = 7, negNoise = 10
17-03-17 17:47:05.648 -07 000000610 INF: Z Motor: After move to -0.171536, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:05.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:47:05.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:05.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:05.648 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:05.648 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:05.648 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:05.648 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:05.648 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:05.648 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:05.648 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:05.648 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:05.648 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:05.648 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:05.658 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:05.658 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:05.658 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:05.658 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:05.668 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:47:05.668 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:47:05.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 17:47:05.668 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:47:05.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37649 150\n [Camera]
17-03-17 17:47:05.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:06.258 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:06.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:06.258 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:06.258 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:06.258 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 17:47:06.268 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:06.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:06.268 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:06.268 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:06.268 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 17:47:06.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37649 778
17-03-17 17:47:06.528 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:06.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:06.598 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:06.658 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 17:47:06.658 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:47:06.658 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:06.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:47:06.668 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:47:06.668 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:06.668 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:06.668 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 17:47:06.668 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:06.678 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:47:06.788 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:06.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:06.788 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:06.788 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:06.788 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1056313392, 0x0, 391868352) start.
17-03-17 17:47:06.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:06.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:06.798 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:06.908 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:06.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:47:06.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:47:06.988 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:06.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37649 150' command took 2 ms to send, 1300 ms to get response, and 1312 ms overall
17-03-17 17:47:06.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:06.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171543595417395. ------
17-03-17 17:47:06.988 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:06.988 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17813 mm
17-03-17 17:47:06.988 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:06.988 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:47:06.988 -07 000000547 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 17:47:06.998 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:07.198 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1056313392, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:47:07.198 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:47:07.198 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:07.198 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:07.198 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 17:47:07.208 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38912, sync = True, waitForSettling = False)
17-03-17 17:47:07.218 -07 000000476 INF: Z Motor: Moving to -0.178128 mm, started at -0.171544 mm, distance = -6.58 um
17-03-17 17:47:07.218 -07 000000476 INF: FPGA: Xmit ZDACW 38912\n [Z Motor]
17-03-17 17:47:07.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:47:07.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:47:07.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:07.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:07.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 17:47:07.348 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:07.348 -07 000000618 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:47:07.348 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 357 ms to get response, and 362 ms overall
17-03-17 17:47:07.348 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:47:07.348 -07 000000476 INF: FPGA: 'ZDACW 38912' command took 0 ms to send, 127 ms to get response, and 137 ms overall
17-03-17 17:47:07.348 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:07.348 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 347 ms to get response, and 360 ms overall
17-03-17 17:47:07.348 -07 000000547 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:07.358 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:07.358 -07 000000618 INF: FPGA: Recv ZDACR 38912
17-03-17 17:47:07.358 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:47:07.358 -07 000000476 INF: Z Motor: MoveAbsStepped took 142 ms (did NOT wait for settling yet))
17-03-17 17:47:07.358 -07 000000547 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:07.358 -07 000000547 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:47:07.368 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:07.558 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:07.558 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 17:47:07.738 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:47:07.738 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 17:47:07.778 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:07.778 -07 000000476 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:47:07.788 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:07.788 -07 000000547 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:07.788 -07 000000547 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:47:07.788 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-17 17:47:08.738 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:08.738 -07 000000541 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:47:08.748 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:08.748 -07 000000547 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:08.758 -07 000000547 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:08.758 -07 000000547 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:08.758 -07 000000547 INF: Y Motor: Moved to 61.5645 after 1772 ms (table move)
17-03-17 17:47:08.768 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178128 mm (DAC = 38912)
17-03-17 17:47:08.768 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.768 -07 000000541 INF: FPGA: Recv ZSGSRD 37021
17-03-17 17:47:08.778 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:08.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.778 -07 000000618 INF: FPGA: Recv ZSGSRD 37018
17-03-17 17:47:08.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.788 -07 000000541 INF: FPGA: Recv ZSGSRD 37020
17-03-17 17:47:08.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.798 -07 000000547 INF: FPGA: Recv ZSGSRD 37014
17-03-17 17:47:08.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.808 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.808 -07 000000547 INF: FPGA: Recv ZSGSRD 37021
17-03-17 17:47:08.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.818 -07 000000618 INF: FPGA: Recv ZSGSRD 37025
17-03-17 17:47:08.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.828 -07 000000547 INF: FPGA: Recv ZSGSRD 37010
17-03-17 17:47:08.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.838 -07 000000476 INF: FPGA: Recv ZSGSRD 37005
17-03-17 17:47:08.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.858 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 4.007176,
17-03-17 17:47:08.858 -07 000000541 INF: FPGA: Recv ZSGSRD 37019
17-03-17 17:47:08.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:08.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:08.868 -07 000000476 INF: FPGA: Recv ZSGSRD 37021
17-03-17 17:47:08.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:08.888 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:08.888 -07 000000547 INF: FPGA: Recv ZPIEZORD 33250
17-03-17 17:47:08.898 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:08.898 -07 000000438 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.3 V.
17-03-17 17:47:08.898 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37017 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37020 (-177.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 37005 (-177.2 uncal um), Max = 37025 (-177.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 17:47:08.898 -07 000000438 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37017, posNoise = 8, negNoise = 12
17-03-17 17:47:08.898 -07 000000438 INF: Z Motor: After move to -0.178128, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:08.898 -07 000000438 INF: Z Motor: Settle wait time = 1553 ms, measure time = 127 ms (allowed 150 ms), total time = 1680 ms
17-03-17 17:47:08.898 -07 000000438 INF: Z Motor: Waiting extra 23 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:08.928 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1934 ms
17-03-17 17:47:08.928 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:08.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:08.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:08.928 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:08.928 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:08.928 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:08.928 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:08.938 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:47:08.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:08.938 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:08.938 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:08.948 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:47:08.948 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:47:08.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:08.988 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:09.188 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:09.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:09.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:09.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 17:47:09.228 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:09.228 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:09.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:47:09.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:47:09.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:09.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:09.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:47:09.328 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:09.328 -07 000000438 INF: Autofocus start
17-03-17 17:47:09.328 -07 000000438 INF: MeasureProfile start
17-03-17 17:47:09.328 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:09.338 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:47:09.338 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:09.338 -07 000000438 INF: MeasureProfile done
17-03-17 17:47:09.338 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:47:09.338 -07 000000438 INF: Autofocus finished
17-03-17 17:47:09.538 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:09.538 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:09.538 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.1781284128627. ----------
17-03-17 17:47:09.548 -07 000000610 INF: Cycle	5	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:09.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37427, sync = True, waitForSettling = True)
17-03-17 17:47:09.548 -07 000000610 INF: Z Motor: Moving to -0.171330 mm, started at -0.178128 mm, distance = 6.80 um
17-03-17 17:47:09.548 -07 000000610 INF: FPGA: Xmit ZDACW 37427\n [Z Motor]
17-03-17 17:47:09.548 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:47:09.558 -07 000000610 INF: FPGA: 'ZDACW 37427' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:09.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:09.558 -07 000000478 INF: FPGA: Recv ZDACR 37427
17-03-17 17:47:09.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35956
17-03-17 17:47:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.728 -07 000000448 INF: FPGA: Recv ZSGSRD 35962
17-03-17 17:47:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.738 -07 000000541 INF: FPGA: Recv ZSGSRD 35956
17-03-17 17:47:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.748 -07 000000382 INF: FPGA: Recv ZSGSRD 35962
17-03-17 17:47:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.758 -07 000000547 INF: FPGA: Recv ZSGSRD 35963
17-03-17 17:47:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.768 -07 000000448 INF: FPGA: Recv ZSGSRD 35961
17-03-17 17:47:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.778 -07 000000541 INF: FPGA: Recv ZSGSRD 35963
17-03-17 17:47:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35959
17-03-17 17:47:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.798 -07 000000478 INF: FPGA: Recv ZSGSRD 35959
17-03-17 17:47:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:09.808 -07 000000476 INF: FPGA: Recv ZSGSRD 35960
17-03-17 17:47:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:09.818 -07 000000382 INF: FPGA: Recv ZPIEZORD 31828
17-03-17 17:47:09.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:09.828 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -9.1 V.
17-03-17 17:47:09.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35960 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35960 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35956 (-170.4 uncal um), Max = 35963 (-170.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:47:09.828 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35960, posNoise = 3, negNoise = 4
17-03-17 17:47:09.828 -07 000000610 INF: Z Motor: After move to -0.171330, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:09.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:47:09.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:09.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:09.828 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:09.828 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:09.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:09.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:47:09.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:09.828 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:09.828 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:09.828 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:09.828 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:09.828 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:09.828 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:09.828 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:09.838 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:09.838 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:09.838 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:47:09.838 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:09.848 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:47:09.848 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:09.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37603 150\n [Camera]
17-03-17 17:47:10.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:10.438 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:10.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:10.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:10.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:10.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:47:10.448 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:10.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:10.448 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:10.448 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:10.448 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1091735656, 0x0, 418435064) start.
17-03-17 17:47:10.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37603 775
17-03-17 17:47:10.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:10.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1091735656, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:47:10.828 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:47:10.828 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:10.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 17:47:10.828 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:47:10.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:10.838 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:10.838 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:10.838 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:47:10.838 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:47:10.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:10.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:10.968 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:10.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:10.978 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:10.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1127157920, 0x0, 391868352) start.
17-03-17 17:47:10.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:10.978 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:11.088 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:11.088 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:47:11.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:11.168 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:11.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37603 150' command took 2 ms to send, 1310 ms to get response, and 1315 ms overall
17-03-17 17:47:11.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:11.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171338020628859. ------
17-03-17 17:47:11.168 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:11.168 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17751 mm
17-03-17 17:47:11.168 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:11.168 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:47:11.168 -07 000000438 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:47:11.178 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:11.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1127157920, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:47:11.378 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:47:11.378 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:11.378 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:11.378 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:47:11.388 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38777, sync = True, waitForSettling = False)
17-03-17 17:47:11.388 -07 000000478 INF: Z Motor: Moving to -0.177510 mm, started at -0.171338 mm, distance = -6.17 um
17-03-17 17:47:11.388 -07 000000478 INF: FPGA: Xmit ZDACW 38777\n [Z Motor]
17-03-17 17:47:11.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 17:47:11.488 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:47:11.488 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:11.488 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:47:11.498 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 17:47:11.508 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:11.508 -07 000000618 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:47:11.508 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 331 ms to get response, and 335 ms overall
17-03-17 17:47:11.508 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 321 ms to get response, and 333 ms overall
17-03-17 17:47:11.508 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:47:11.508 -07 000000478 INF: FPGA: 'ZDACW 38777' command took 0 ms to send, 111 ms to get response, and 117 ms overall
17-03-17 17:47:11.508 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:11.508 -07 000000438 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:11.508 -07 000000438 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:11.508 -07 000000438 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:47:11.508 -07 000000618 INF: FPGA: Recv ZDACR 38777
17-03-17 17:47:11.518 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:11.518 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:11.518 -07 000000478 INF: Z Motor: MoveAbsStepped took 125 ms (did NOT wait for settling yet))
17-03-17 17:47:11.528 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:11.528 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:11.718 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:11.718 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 17:47:11.908 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 17:47:11.908 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 17:47:11.938 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:11.938 -07 000000478 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:47:11.948 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:11.948 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:11.948 -07 000000438 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:47:11.948 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 17:47:12.898 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:12.898 -07 000000618 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:47:12.908 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:12.908 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:12.918 -07 000000438 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:12.918 -07 000000438 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:12.918 -07 000000438 INF: Y Motor: Moved to 62.3960 after 1750 ms (table move)
17-03-17 17:47:12.928 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177510 mm (DAC = 38777)
17-03-17 17:47:12.928 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36917
17-03-17 17:47:12.938 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:12.938 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.938 -07 000000618 INF: FPGA: Recv ZSGSRD 36921
17-03-17 17:47:12.948 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:12.948 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.948 -07 000000478 INF: FPGA: Recv ZSGSRD 36928
17-03-17 17:47:12.958 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:12.958 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.958 -07 000000438 INF: FPGA: Recv ZSGSRD 36925
17-03-17 17:47:12.968 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:12.968 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.968 -07 000000478 INF: FPGA: Recv ZSGSRD 36918
17-03-17 17:47:12.978 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:12.978 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.978 -07 000000382 INF: FPGA: Recv ZSGSRD 36917
17-03-17 17:47:12.988 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:12.988 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.988 -07 000000382 INF: FPGA: Recv ZSGSRD 36925
17-03-17 17:47:12.998 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:12.998 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:12.998 -07 000000438 INF: FPGA: Recv ZSGSRD 36926
17-03-17 17:47:13.008 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.008 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.008 -07 000000382 INF: FPGA: Recv ZSGSRD 36918
17-03-17 17:47:13.018 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.018 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36922
17-03-17 17:47:13.028 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.028 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:13.028 -07 000000618 INF: FPGA: Recv ZPIEZORD 33102
17-03-17 17:47:13.038 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.038 -07 000000462 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.5 V.
17-03-17 17:47:13.038 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36922 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36922 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36917 (-176.6 uncal um), Max = 36928 (-176.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:47:13.038 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36922, posNoise = 6, negNoise = 5
17-03-17 17:47:13.038 -07 000000462 INF: Z Motor: After move to -0.177510, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:13.038 -07 000000462 INF: Z Motor: Settle wait time = 1537 ms, measure time = 108 ms (allowed 150 ms), total time = 1645 ms
17-03-17 17:47:13.038 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:13.088 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1914 ms
17-03-17 17:47:13.088 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:13.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:13.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:13.088 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:13.088 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:13.088 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:13.088 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:13.088 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:13.088 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:13.088 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:13.088 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:13.098 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:47:13.098 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:47:13.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:13.148 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:13.348 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:13.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:13.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:13.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 17:47:13.388 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:13.388 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:13.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:47:13.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:47:13.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:13.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:13.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:47:13.488 -07 000000438 INF: Autofocus start
17-03-17 17:47:13.488 -07 000000438 INF: MeasureProfile start
17-03-17 17:47:13.488 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:13.488 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:13.498 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:13.498 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:13.498 -07 000000438 INF: MeasureProfile done
17-03-17 17:47:13.498 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:47:13.498 -07 000000438 INF: Autofocus finished
17-03-17 17:47:13.698 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:13.698 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:47:13.708 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177518112709233. ----------
17-03-17 17:47:13.708 -07 000000610 INF: Cycle	5	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:13.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37274, sync = True, waitForSettling = True)
17-03-17 17:47:13.708 -07 000000610 INF: Z Motor: Moving to -0.170629 mm, started at -0.177518 mm, distance = 6.89 um
17-03-17 17:47:13.708 -07 000000610 INF: FPGA: Xmit ZDACW 37274\n [Z Motor]
17-03-17 17:47:13.708 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:47:13.718 -07 000000610 INF: FPGA: 'ZDACW 37274' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:13.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:13.718 -07 000000448 INF: FPGA: Recv ZDACR 37274
17-03-17 17:47:13.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:13.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.878 -07 000000478 INF: FPGA: Recv ZSGSRD 35853
17-03-17 17:47:13.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:13.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.888 -07 000000462 INF: FPGA: Recv ZSGSRD 35852
17-03-17 17:47:13.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.898 -07 000000478 INF: FPGA: Recv ZSGSRD 35851
17-03-17 17:47:13.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.908 -07 000000462 INF: FPGA: Recv ZSGSRD 35848
17-03-17 17:47:13.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.918 -07 000000438 INF: FPGA: Recv ZSGSRD 35856
17-03-17 17:47:13.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35853
17-03-17 17:47:13.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:13.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.948 -07 000000478 INF: FPGA: Recv ZSGSRD 35855
17-03-17 17:47:13.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.958 -07 000000608 INF: FPGA: Recv ZSGSRD 35853
17-03-17 17:47:13.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35850
17-03-17 17:47:13.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:13.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35847
17-03-17 17:47:13.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:13.988 -07 000000478 INF: FPGA: Recv ZPIEZORD 31712
17-03-17 17:47:13.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:13.998 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.688 V. Piezo Error = -9.1 V.
17-03-17 17:47:13.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35852 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35852 (-169.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35847 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:47:13.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35852, posNoise = 4, negNoise = 5
17-03-17 17:47:13.998 -07 000000610 INF: Z Motor: After move to -0.170629, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:13.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 17:47:13.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:13.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:13.998 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:13.998 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:13.998 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:13.998 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:13.998 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:13.998 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:13.998 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:13.998 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:13.998 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:47:13.998 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:14.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:14.008 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:14.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:47:14.008 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:14.008 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:47:14.008 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:14.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:47:14.018 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:47:14.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37451 150\n [Camera]
17-03-17 17:47:14.218 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:14.248 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.993549,
17-03-17 17:47:14.608 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:14.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:14.608 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:14.608 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:14.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:14.608 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:14.618 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:14.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1056313392, 0x0, 391868352) start.
17-03-17 17:47:14.618 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:14.618 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1091735656, 0x0, 418435064) start.
17-03-17 17:47:14.798 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37451 775
17-03-17 17:47:14.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:14.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1056313392, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:47:14.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1091735656, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:47:14.988 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:47:14.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:14.988 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:47:14.988 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:14.998 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:14.998 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:14.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:47:14.998 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:47:15.138 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:15.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:15.138 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:15.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:15.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:47:15.138 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:15.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:15.138 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:15.138 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:15.138 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1477424512, 0x0, 418435064) start.
17-03-17 17:47:15.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:15.328 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:15.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37451 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:47:15.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:15.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.170644205717549. ------
17-03-17 17:47:15.328 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17731 mm
17-03-17 17:47:15.338 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:15.338 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:15.338 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:47:15.338 -07 000000475 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:47:15.338 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:15.338 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38732, sync = True, waitForSettling = False)
17-03-17 17:47:15.338 -07 000000438 INF: Z Motor: Moving to -0.177304 mm, started at -0.170644 mm, distance = -6.66 um
17-03-17 17:47:15.348 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:15.348 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:15.348 -07 000000618 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:47:15.358 -07 000000438 INF: FPGA: Xmit ZDACW 38732\n [Z Motor]
17-03-17 17:47:15.358 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:47:15.358 -07 000000475 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:15.358 -07 000000475 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:15.358 -07 000000475 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:47:15.358 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:47:15.368 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:15.368 -07 000000438 INF: FPGA: 'ZDACW 38732' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:47:15.378 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:15.388 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:15.388 -07 000000448 INF: FPGA: Recv ZDACR 38732
17-03-17 17:47:15.398 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:47:15.398 -07 000000438 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 17:47:15.528 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:47:15.528 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:47:15.528 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:15.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1477424512, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 17:47:15.528 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:47:15.528 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:15.528 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:15.538 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:47:15.538 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:47:15.538 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:47:15.568 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:15.568 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 17:47:15.748 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:47:15.748 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:47:15.778 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:15.788 -07 000000480 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:47:15.788 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:47:15.788 -07 000000475 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:15.788 -07 000000475 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:47:15.788 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 17:47:16.528 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:16.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:16.738 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:16.738 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:47:16.748 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:16.748 -07 000000475 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:16.758 -07 000000475 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:16.758 -07 000000475 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:47:16.758 -07 000000475 INF: Y Motor: Moved to 63.2251 after 1425 ms (table move)
17-03-17 17:47:16.768 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177304 mm (DAC = 38732)
17-03-17 17:47:16.768 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.768 -07 000000618 INF: FPGA: Recv ZSGSRD 36891
17-03-17 17:47:16.778 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:16.778 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.778 -07 000000475 INF: FPGA: Recv ZSGSRD 36890
17-03-17 17:47:16.788 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.788 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.788 -07 000000618 INF: FPGA: Recv ZSGSRD 36888
17-03-17 17:47:16.798 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.798 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.798 -07 000000382 INF: FPGA: Recv ZSGSRD 36885
17-03-17 17:47:16.808 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.808 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.808 -07 000000462 INF: FPGA: Recv ZSGSRD 36884
17-03-17 17:47:16.818 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.818 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.818 -07 000000618 INF: FPGA: Recv ZSGSRD 36887
17-03-17 17:47:16.828 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:16.828 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.828 -07 000000475 INF: FPGA: Recv ZSGSRD 36901
17-03-17 17:47:16.838 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.838 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.838 -07 000000462 INF: FPGA: Recv ZSGSRD 36896
17-03-17 17:47:16.848 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.848 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.848 -07 000000462 INF: FPGA: Recv ZSGSRD 36886
17-03-17 17:47:16.858 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.858 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:16.858 -07 000000475 INF: FPGA: Recv ZSGSRD 36891
17-03-17 17:47:16.868 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.868 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:16.868 -07 000000462 INF: FPGA: Recv ZPIEZORD 33075
17-03-17 17:47:16.878 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:16.878 -07 000000478 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.4 V.
17-03-17 17:47:16.878 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36890 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36889 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36884 (-176.4 uncal um), Max = 36901 (-176.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:47:16.878 -07 000000478 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36890, posNoise = 11, negNoise = 6
17-03-17 17:47:16.878 -07 000000478 INF: Z Motor: After move to -0.177304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:16.878 -07 000000478 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:47:16.878 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:16.928 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 17:47:16.928 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:16.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:16.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:16.928 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:16.928 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:16.928 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:16.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:16.928 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:47:16.928 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:16.938 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:16.938 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:16.938 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:47:16.938 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:47:16.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:16.988 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:17.188 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:17.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:17.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:17.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:17.228 -07 000000618 INF: FPGA: Recv @CAMSNAP 283
17-03-17 17:47:17.238 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:17.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 17:47:17.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:47:17.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:17.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:17.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:47:17.338 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:17.338 -07 000000618 INF: Autofocus start
17-03-17 17:47:17.338 -07 000000618 INF: MeasureProfile start
17-03-17 17:47:17.338 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:17.348 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:17.348 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:17.348 -07 000000618 INF: MeasureProfile done
17-03-17 17:47:17.348 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:47:17.348 -07 000000618 INF: Autofocus finished
17-03-17 17:47:17.548 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:17.548 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:17.548 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.177312537920697. ----------
17-03-17 17:47:17.548 -07 000000610 INF: Cycle	5	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:17.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37247, sync = True, waitForSettling = True)
17-03-17 17:47:17.558 -07 000000610 INF: Z Motor: Moving to -0.170506 mm, started at -0.177313 mm, distance = 6.81 um
17-03-17 17:47:17.558 -07 000000610 INF: FPGA: Xmit ZDACW 37247\n [Z Motor]
17-03-17 17:47:17.558 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:47:17.568 -07 000000610 INF: FPGA: 'ZDACW 37247' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:17.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:17.568 -07 000000462 INF: FPGA: Recv ZDACR 37247
17-03-17 17:47:17.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:17.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.728 -07 000000462 INF: FPGA: Recv ZSGSRD 35831
17-03-17 17:47:17.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:17.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.738 -07 000000475 INF: FPGA: Recv ZSGSRD 35835
17-03-17 17:47:17.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.748 -07 000000618 INF: FPGA: Recv ZSGSRD 35833
17-03-17 17:47:17.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.758 -07 000000618 INF: FPGA: Recv ZSGSRD 35828
17-03-17 17:47:17.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.768 -07 000000475 INF: FPGA: Recv ZSGSRD 35830
17-03-17 17:47:17.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35832
17-03-17 17:47:17.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35831
17-03-17 17:47:17.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.798 -07 000000478 INF: FPGA: Recv ZSGSRD 35834
17-03-17 17:47:17.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.808 -07 000000382 INF: FPGA: Recv ZSGSRD 35836
17-03-17 17:47:17.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:17.818 -07 000000478 INF: FPGA: Recv ZSGSRD 35832
17-03-17 17:47:17.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:17.828 -07 000000462 INF: FPGA: Recv ZPIEZORD 31673
17-03-17 17:47:17.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:17.838 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.2 V.
17-03-17 17:47:17.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35832 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35836 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:47:17.838 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35832, posNoise = 4, negNoise = 4
17-03-17 17:47:17.838 -07 000000610 INF: Z Motor: After move to -0.170506, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:17.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:47:17.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:17.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:17.838 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:17.838 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:17.838 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:17.838 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:17.838 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:17.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:17.838 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:17.838 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:47:17.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:17.838 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:17.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:17.848 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:17.848 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:17.848 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:17.858 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:47:17.858 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:17.858 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:47:17.858 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:47:17.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37424 150\n [Camera]
17-03-17 17:47:18.058 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 17:47:18.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:18.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:18.448 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:18.448 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:18.448 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:47:18.448 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:18.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:18.448 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:18.578 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:18.578 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:47:18.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37424 775
17-03-17 17:47:18.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:18.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:47:18.838 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:47:18.838 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:18.838 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:18.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:47:18.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:47:18.948 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:47:18.948 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:18.958 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:18.958 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 17:47:18.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:18.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:18.978 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:18.978 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:18.978 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 17:47:18.978 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:18.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:18.978 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:18.978 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:18.978 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:47:19.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:19.168 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:19.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37424 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:47:19.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:19.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.170515721474714. ------
17-03-17 17:47:19.178 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:19.178 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17664 mm
17-03-17 17:47:19.178 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:19.178 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:19.178 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:47:19.178 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 17:47:19.178 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38587, sync = True, waitForSettling = False)
17-03-17 17:47:19.178 -07 000000475 INF: Z Motor: Moving to -0.176640 mm, started at -0.170516 mm, distance = -6.12 um
17-03-17 17:47:19.188 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:19.188 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:19.188 -07 000000480 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:47:19.198 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:47:19.198 -07 000000618 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:19.198 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:19.198 -07 000000618 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:47:19.198 -07 000000475 INF: FPGA: Xmit ZDACW 38587\n [Z Motor]
17-03-17 17:47:19.198 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:47:19.208 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:19.208 -07 000000475 INF: FPGA: 'ZDACW 38587' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:47:19.218 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:19.228 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:19.228 -07 000000462 INF: FPGA: Recv ZDACR 38587
17-03-17 17:47:19.238 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:47:19.238 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:47:19.358 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:47:19.358 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:47:19.358 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:19.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:47:19.358 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:47:19.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:19.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:19.368 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:47:19.368 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:47:19.368 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:47:19.408 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:19.408 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:47:19.588 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:47:19.588 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:47:19.608 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.974486,
17-03-17 17:47:19.648 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:19.648 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:47:19.658 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:47:19.658 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:19.658 -07 000000618 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:47:19.658 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 17:47:20.608 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:20.608 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:47:20.618 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:20.618 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:20.628 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:20.628 -07 000000618 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:20.628 -07 000000618 INF: Y Motor: Moved to 64.0571 after 1449 ms (table move)
17-03-17 17:47:20.638 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176640 mm (DAC = 38587)
17-03-17 17:47:20.638 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.638 -07 000000480 INF: FPGA: Recv ZSGSRD 36788
17-03-17 17:47:20.648 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:20.648 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.648 -07 000000476 INF: FPGA: Recv ZSGSRD 36791
17-03-17 17:47:20.658 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.658 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.658 -07 000000462 INF: FPGA: Recv ZSGSRD 36781
17-03-17 17:47:20.668 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.668 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.668 -07 000000627 INF: FPGA: Recv ZSGSRD 36792
17-03-17 17:47:20.678 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.678 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.678 -07 000000476 INF: FPGA: Recv ZSGSRD 36787
17-03-17 17:47:20.688 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.688 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.688 -07 000000627 INF: FPGA: Recv ZSGSRD 36784
17-03-17 17:47:20.698 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.698 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.698 -07 000000476 INF: FPGA: Recv ZSGSRD 36787
17-03-17 17:47:20.708 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.708 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.708 -07 000000627 INF: FPGA: Recv ZSGSRD 36783
17-03-17 17:47:20.718 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.718 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.718 -07 000000547 INF: FPGA: Recv ZSGSRD 36786
17-03-17 17:47:20.728 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.728 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:20.728 -07 000000541 INF: FPGA: Recv ZSGSRD 36789
17-03-17 17:47:20.738 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.738 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:20.738 -07 000000618 INF: FPGA: Recv ZPIEZORD 32945
17-03-17 17:47:20.748 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:20.748 -07 000000478 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.888 V. Piezo Error = -8.5 V.
17-03-17 17:47:20.748 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36787 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36787 (-175.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36781 (-175.7 uncal um), Max = 36792 (-175.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:47:20.748 -07 000000478 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36787, posNoise = 5, negNoise = 6
17-03-17 17:47:20.748 -07 000000478 INF: Z Motor: After move to -0.176640, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:20.748 -07 000000478 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-17 17:47:20.748 -07 000000478 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:20.798 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 17:47:20.798 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:20.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:20.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:20.798 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:20.798 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:20.798 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:20.798 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:20.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:20.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:20.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:20.808 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:20.818 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:47:20.818 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:47:20.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:20.868 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:21.068 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:21.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:21.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:21.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:21.108 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:21.108 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:21.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 17:47:21.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:47:21.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:21.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:21.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:47:21.208 -07 000000623 INF: Autofocus start
17-03-17 17:47:21.208 -07 000000623 INF: MeasureProfile start
17-03-17 17:47:21.218 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:21.218 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:21.218 -07 000000623 INF: MeasureProfile done
17-03-17 17:47:21.228 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:47:21.228 -07 000000623 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:47:21.228 -07 000000623 INF: Autofocus finished
17-03-17 17:47:21.228 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:21.428 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:21.428 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:21.428 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176650844070095. ----------
17-03-17 17:47:21.428 -07 000000610 INF: Cycle	5	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:21.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37102, sync = True, waitForSettling = True)
17-03-17 17:47:21.438 -07 000000610 INF: Z Motor: Moving to -0.169842 mm, started at -0.176651 mm, distance = 6.81 um
17-03-17 17:47:21.438 -07 000000610 INF: FPGA: Xmit ZDACW 37102\n [Z Motor]
17-03-17 17:47:21.438 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:47:21.448 -07 000000610 INF: FPGA: 'ZDACW 37102' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:21.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:21.448 -07 000000478 INF: FPGA: Recv ZDACR 37102
17-03-17 17:47:21.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:21.528 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:21.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.608 -07 000000438 INF: FPGA: Recv ZSGSRD 35726
17-03-17 17:47:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.618 -07 000000478 INF: FPGA: Recv ZSGSRD 35730
17-03-17 17:47:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.628 -07 000000478 INF: FPGA: Recv ZSGSRD 35727
17-03-17 17:47:21.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35729
17-03-17 17:47:21.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.648 -07 000000478 INF: FPGA: Recv ZSGSRD 35726
17-03-17 17:47:21.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.658 -07 000000618 INF: FPGA: Recv ZSGSRD 35721
17-03-17 17:47:21.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35730
17-03-17 17:47:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35731
17-03-17 17:47:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.688 -07 000000618 INF: FPGA: Recv ZSGSRD 35729
17-03-17 17:47:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:21.698 -07 000000618 INF: FPGA: Recv ZSGSRD 35722
17-03-17 17:47:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:21.708 -07 000000438 INF: FPGA: Recv ZPIEZORD 31542
17-03-17 17:47:21.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:21.718 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -9.2 V.
17-03-17 17:47:21.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35727 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35721 (-168.9 uncal um), Max = 35731 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:47:21.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35727, posNoise = 4, negNoise = 6
17-03-17 17:47:21.718 -07 000000610 INF: Z Motor: After move to -0.169842, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:21.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:47:21.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:21.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:21.718 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:21.718 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:21.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:21.718 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:21.718 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:21.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:21.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:21.718 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:21.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:21.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:21.728 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:21.728 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:21.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:47:21.728 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:21.738 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:47:21.738 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:47:21.738 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:47:21.738 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:47:21.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37278 150\n [Camera]
17-03-17 17:47:21.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 17:47:22.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:22.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:22.328 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:22.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:22.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 17:47:22.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:22.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:22.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:22.448 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:22.448 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:47:22.518 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37278 775
17-03-17 17:47:22.668 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:22.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:47:22.708 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:47:22.708 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:22.708 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:22.708 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:47:22.818 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:47:22.818 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:47:22.818 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:22.828 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:22.828 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 17:47:22.858 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:22.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:22.858 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:22.858 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:22.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:22.858 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:22.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:22.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:47:22.868 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:22.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:47:23.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:47:23.048 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:23.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37278 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:47:23.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:23.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169841179199829. ------
17-03-17 17:47:23.058 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:23.058 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17626 mm
17-03-17 17:47:23.058 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:23.058 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:23.058 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:47:23.058 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 17:47:23.058 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38504, sync = True, waitForSettling = False)
17-03-17 17:47:23.058 -07 000000480 INF: Z Motor: Moving to -0.176260 mm, started at -0.169841 mm, distance = -6.42 um
17-03-17 17:47:23.068 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:23.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:23.068 -07 000000478 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:47:23.078 -07 000000480 INF: FPGA: Xmit ZDACW 38504\n [Z Motor]
17-03-17 17:47:23.078 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:47:23.078 -07 000000608 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:23.078 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:47:23.078 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:23.078 -07 000000608 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:47:23.088 -07 000000480 INF: FPGA: 'ZDACW 38504' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:47:23.088 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:23.098 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:23.108 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:23.108 -07 000000462 INF: FPGA: Recv ZDACR 38504
17-03-17 17:47:23.118 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:47:23.118 -07 000000480 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:47:23.238 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:47:23.238 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:47:23.238 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:23.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:47:23.238 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:47:23.238 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:23.248 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:23.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:47:23.248 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:47:23.248 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:47:23.288 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:23.288 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:47:23.468 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:47:23.468 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:47:23.498 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:23.508 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:47:23.508 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:47:23.508 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:23.508 -07 000000608 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:47:23.508 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.835 mm, average velocity = 2.126 mm/sec
17-03-17 17:47:24.458 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:24.458 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:47:24.468 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.468 -07 000000608 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:24.478 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:24.478 -07 000000608 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:24.478 -07 000000608 INF: Y Motor: Moved to 64.8794 after 1422 ms (table move)
17-03-17 17:47:24.488 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176260 mm (DAC = 38504)
17-03-17 17:47:24.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.488 -07 000000480 INF: FPGA: Recv ZSGSRD 36722
17-03-17 17:47:24.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:47:24.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.498 -07 000000475 INF: FPGA: Recv ZSGSRD 36721
17-03-17 17:47:24.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.508 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.508 -07 000000382 INF: FPGA: Recv ZSGSRD 36723
17-03-17 17:47:24.518 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.518 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.518 -07 000000480 INF: FPGA: Recv ZSGSRD 36726
17-03-17 17:47:24.528 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.528 -07 000000382 INF: FPGA: Recv ZSGSRD 36729
17-03-17 17:47:24.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.538 -07 000000541 INF: FPGA: Recv ZSGSRD 36734
17-03-17 17:47:24.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.548 -07 000000547 INF: FPGA: Recv ZSGSRD 36737
17-03-17 17:47:24.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.558 -07 000000476 INF: FPGA: Recv ZSGSRD 36719
17-03-17 17:47:24.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36724
17-03-17 17:47:24.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.578 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:24.578 -07 000000476 INF: FPGA: Recv ZSGSRD 36723
17-03-17 17:47:24.588 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.588 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:24.588 -07 000000475 INF: FPGA: Recv ZPIEZORD 32866
17-03-17 17:47:24.598 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:24.598 -07 000000448 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.875 V. Piezo Error = -8.5 V.
17-03-17 17:47:24.598 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36726 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36724 (-175.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36719 (-175.3 uncal um), Max = 36737 (-175.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:47:24.598 -07 000000448 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36726, posNoise = 11, negNoise = 7
17-03-17 17:47:24.598 -07 000000448 INF: Z Motor: After move to -0.176260, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:24.598 -07 000000448 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 17:47:24.598 -07 000000448 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:24.648 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 17:47:24.648 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:24.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:24.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:24.648 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:24.648 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:24.648 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:24.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:24.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:47:24.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:24.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:24.658 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:24.658 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:47:24.658 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:47:24.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:24.708 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:24.908 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:24.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:24.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:24.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:24.948 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:24.948 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:24.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:47:24.968 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.986717,
17-03-17 17:47:25.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:47:25.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:25.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:25.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:47:25.048 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:25.048 -07 000000541 INF: Autofocus start
17-03-17 17:47:25.048 -07 000000541 INF: MeasureProfile start
17-03-17 17:47:25.048 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:25.058 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:25.058 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:25.058 -07 000000541 INF: MeasureProfile done
17-03-17 17:47:25.058 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:47:25.068 -07 000000541 INF: Autofocus finished
17-03-17 17:47:25.258 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:25.258 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:25.258 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176258967129448. ----------
17-03-17 17:47:25.268 -07 000000610 INF: Cycle	5	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:25.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37019, sync = True, waitForSettling = True)
17-03-17 17:47:25.268 -07 000000610 INF: Z Motor: Moving to -0.169462 mm, started at -0.176259 mm, distance = 6.80 um
17-03-17 17:47:25.268 -07 000000610 INF: FPGA: Xmit ZDACW 37019\n [Z Motor]
17-03-17 17:47:25.268 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:47:25.278 -07 000000610 INF: FPGA: 'ZDACW 37019' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:25.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:25.278 -07 000000448 INF: FPGA: Recv ZDACR 37019
17-03-17 17:47:25.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:25.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.438 -07 000000608 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:47:25.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.448 -07 000000480 INF: FPGA: Recv ZSGSRD 35672
17-03-17 17:47:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35666
17-03-17 17:47:25.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35669
17-03-17 17:47:25.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.478 -07 000000608 INF: FPGA: Recv ZSGSRD 35677
17-03-17 17:47:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.488 -07 000000475 INF: FPGA: Recv ZSGSRD 35666
17-03-17 17:47:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.498 -07 000000480 INF: FPGA: Recv ZSGSRD 35669
17-03-17 17:47:25.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:47:25.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.518 -07 000000475 INF: FPGA: Recv ZSGSRD 35668
17-03-17 17:47:25.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:25.528 -07 000000541 INF: FPGA: Recv ZSGSRD 35670
17-03-17 17:47:25.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:25.538 -07 000000382 INF: FPGA: Recv ZPIEZORD 31455
17-03-17 17:47:25.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:25.548 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.3 V.
17-03-17 17:47:25.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35669 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35668 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35666 (-168.6 uncal um), Max = 35677 (-168.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:47:25.548 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35669, posNoise = 8, negNoise = 3
17-03-17 17:47:25.548 -07 000000610 INF: Z Motor: After move to -0.169462, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:25.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:47:25.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:25.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:25.548 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:25.548 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:25.548 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:25.548 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:25.548 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:25.548 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:25.548 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:47:25.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:25.548 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:25.548 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:25.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:25.558 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:25.558 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:25.558 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:25.568 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:47:25.568 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:47:25.568 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:25.568 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:25.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37195 150\n [Camera]
17-03-17 17:47:25.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:26.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:26.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:26.158 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:26.158 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:26.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:47:26.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:26.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:26.158 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:26.158 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:26.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:47:26.348 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37195 775
17-03-17 17:47:26.498 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:26.528 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:26.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:26.538 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:47:26.538 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:47:26.538 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:26.538 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:26.538 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:47:26.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:47:26.538 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:47:26.538 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:26.548 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:26.548 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:47:26.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:26.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:26.688 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:26.808 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:26.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:26.808 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:26.808 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:26.808 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) start.
17-03-17 17:47:26.808 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:26.808 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1068994152, 0x0, 418435064) start.
17-03-17 17:47:26.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:26.878 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:26.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37195 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:47:26.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:26.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.169468574895607. ------
17-03-17 17:47:26.888 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17597 mm
17-03-17 17:47:26.888 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:26.888 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:26.888 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:26.888 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38441, sync = True, waitForSettling = False)
17-03-17 17:47:26.888 -07 000000462 INF: Z Motor: Moving to -0.175972 mm, started at -0.169469 mm, distance = -6.50 um
17-03-17 17:47:26.888 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:47:26.888 -07 000000480 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:47:26.898 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:26.898 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:26.898 -07 000000476 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:47:26.908 -07 000000462 INF: FPGA: Xmit ZDACW 38441\n [Z Motor]
17-03-17 17:47:26.908 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:47:26.908 -07 000000480 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:26.908 -07 000000480 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:26.908 -07 000000480 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:47:26.908 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:47:26.918 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:26.918 -07 000000462 INF: FPGA: 'ZDACW 38441' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:47:26.928 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:26.938 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:26.938 -07 000000551 INF: FPGA: Recv ZDACR 38441
17-03-17 17:47:26.948 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:47:26.948 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:47:27.118 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:27.118 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:47:27.188 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1068994152, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:47:27.188 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:47:27.188 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:27.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:47:27.188 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:47:27.188 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:27.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:27.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:27.198 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 17:47:27.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:47:27.298 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 17:47:27.298 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:47:27.328 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:27.338 -07 000000438 INF: FPGA: Recv YRDPOS 134583
17-03-17 17:47:27.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:27.348 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:27.348 -07 000000480 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:47:27.348 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 17:47:28.298 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:28.298 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:47:28.308 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:28.308 -07 000000480 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:28.318 -07 000000480 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:28.318 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:47:28.318 -07 000000480 INF: Y Motor: Moved to 65.7148 after 1432 ms (table move)
17-03-17 17:47:28.328 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175972 mm (DAC = 38441)
17-03-17 17:47:28.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.328 -07 000000623 INF: FPGA: Recv ZSGSRD 36688
17-03-17 17:47:28.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:28.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36679
17-03-17 17:47:28.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.348 -07 000000476 INF: FPGA: Recv ZSGSRD 36680
17-03-17 17:47:28.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.358 -07 000000480 INF: FPGA: Recv ZSGSRD 36682
17-03-17 17:47:28.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.368 -07 000000627 INF: FPGA: Recv ZSGSRD 36680
17-03-17 17:47:28.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.378 -07 000000475 INF: FPGA: Recv ZSGSRD 36688
17-03-17 17:47:28.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:28.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.388 -07 000000623 INF: FPGA: Recv ZSGSRD 36685
17-03-17 17:47:28.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.398 -07 000000438 INF: FPGA: Recv ZSGSRD 36680
17-03-17 17:47:28.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.408 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.408 -07 000000618 INF: FPGA: Recv ZSGSRD 36676
17-03-17 17:47:28.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:28.418 -07 000000476 INF: FPGA: Recv ZSGSRD 36681
17-03-17 17:47:28.428 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.428 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:28.428 -07 000000448 INF: FPGA: Recv ZPIEZORD 32826
17-03-17 17:47:28.438 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:28.438 -07 000000547 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.5 V.
17-03-17 17:47:28.438 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36682 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36680 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36676 (-175.0 uncal um), Max = 36688 (-175.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:47:28.438 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36682, posNoise = 6, negNoise = 6
17-03-17 17:47:28.438 -07 000000547 INF: Z Motor: After move to -0.175972, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:28.438 -07 000000547 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-17 17:47:28.438 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:28.488 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:47:28.488 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:28.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:28.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:28.488 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:28.488 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:28.488 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:28.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:28.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:47:28.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:28.498 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:28.498 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:28.508 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:47:28.508 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:47:28.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:28.548 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:28.748 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:28.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:28.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:28.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) start.
17-03-17 17:47:28.788 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:28.788 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:28.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:47:28.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:47:28.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:28.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:28.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 17:47:28.988 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:28.988 -07 000000448 INF: Autofocus start
17-03-17 17:47:28.988 -07 000000448 INF: MeasureProfile start
17-03-17 17:47:28.988 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:28.998 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:28.998 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:28.998 -07 000000448 INF: MeasureProfile done
17-03-17 17:47:28.998 -07 000000448 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:47:28.998 -07 000000448 INF: Autofocus finished
17-03-17 17:47:29.198 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:29.198 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:29.198 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.17597630179521. ----------
17-03-17 17:47:29.198 -07 000000610 INF: Cycle	5	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:29.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36956, sync = True, waitForSettling = True)
17-03-17 17:47:29.208 -07 000000610 INF: Z Motor: Moving to -0.169174 mm, started at -0.175976 mm, distance = 6.80 um
17-03-17 17:47:29.208 -07 000000610 INF: FPGA: Xmit ZDACW 36956\n [Z Motor]
17-03-17 17:47:29.208 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:47:29.218 -07 000000610 INF: FPGA: 'ZDACW 36956' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:29.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:29.218 -07 000000623 INF: FPGA: Recv ZDACR 36956
17-03-17 17:47:29.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:29.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.378 -07 000000462 INF: FPGA: Recv ZSGSRD 35625
17-03-17 17:47:29.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:29.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.388 -07 000000459 INF: FPGA: Recv ZSGSRD 35628
17-03-17 17:47:29.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.398 -07 000000382 INF: FPGA: Recv ZSGSRD 35626
17-03-17 17:47:29.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.408 -07 000000623 INF: FPGA: Recv ZSGSRD 35623
17-03-17 17:47:29.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35619
17-03-17 17:47:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.428 -07 000000569 INF: FPGA: Recv ZSGSRD 35623
17-03-17 17:47:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.438 -07 000000476 INF: FPGA: Recv ZSGSRD 35629
17-03-17 17:47:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.448 -07 000000478 INF: FPGA: Recv ZSGSRD 35624
17-03-17 17:47:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.458 -07 000000618 INF: FPGA: Recv ZSGSRD 35624
17-03-17 17:47:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:29.468 -07 000000569 INF: FPGA: Recv ZSGSRD 35625
17-03-17 17:47:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:29.478 -07 000000627 INF: FPGA: Recv ZPIEZORD 31410
17-03-17 17:47:29.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:29.488 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.3 V.
17-03-17 17:47:29.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35625 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35624 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35619 (-168.3 uncal um), Max = 35629 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:47:29.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35625, posNoise = 4, negNoise = 6
17-03-17 17:47:29.488 -07 000000610 INF: Z Motor: After move to -0.169174, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:29.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:47:29.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:29.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:29.488 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:29.488 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:29.488 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:29.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:29.488 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:29.488 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:47:29.488 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:29.488 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:29.488 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:29.488 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:29.498 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:29.498 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:29.498 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:29.498 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:29.508 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:47:29.508 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:47:29.508 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:47:29.508 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:47:29.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37133 150\n [Camera]
17-03-17 17:47:29.708 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:30.098 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:30.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:30.098 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:30.098 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:30.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:47:30.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:30.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:30.098 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:30.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:30.108 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:47:30.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37133 775
17-03-17 17:47:30.328 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.964938,
17-03-17 17:47:30.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:30.478 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:47:30.478 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:47:30.478 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:30.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:47:30.478 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:47:30.478 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:30.488 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:30.488 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:47:30.488 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:47:30.488 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:47:30.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:30.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:30.628 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:30.738 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:30.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:30.738 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:30.738 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:30.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:47:30.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:30.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:47:30.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:30.818 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:30.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37133 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:47:30.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:30.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169185909561369. ------
17-03-17 17:47:30.828 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17548 mm
17-03-17 17:47:30.828 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:30.828 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:30.828 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:47:30.828 -07 000000448 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:47:30.838 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:31.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:47:31.118 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:47:31.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:31.118 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:47:31.118 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:47:31.118 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:31.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:31.128 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:31.128 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 17:47:31.138 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:47:31.138 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38333, sync = True, waitForSettling = False)
17-03-17 17:47:31.138 -07 000000569 INF: Z Motor: Moving to -0.175477 mm, started at -0.169186 mm, distance = -6.29 um
17-03-17 17:47:31.138 -07 000000569 INF: FPGA: Xmit ZDACW 38333\n [Z Motor]
17-03-17 17:47:31.138 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:31.138 -07 000000551 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:47:31.138 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 299 ms to get response, and 312 ms overall
17-03-17 17:47:31.138 -07 000000448 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:31.148 -07 000000448 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:31.148 -07 000000448 INF: Y Motor: Moving 1340 steps-17
17-03-17 17:47:31.148 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 309 ms to get response, and 315 ms overall
17-03-17 17:47:31.148 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:47:31.148 -07 000000569 INF: FPGA: 'ZDACW 38333' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:47:31.148 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:31.158 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:31.168 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:31.168 -07 000000551 INF: FPGA: Recv ZDACR 38333
17-03-17 17:47:31.178 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:47:31.178 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 17:47:31.358 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:31.358 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 17:47:31.528 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:47:31.528 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 370 ms to get response, and 379 ms overall
17-03-17 17:47:31.528 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:31.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:31.558 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:31.558 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:47:31.568 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:31.568 -07 000000448 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:31.568 -07 000000448 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:47:31.568 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.210 mm/sec
17-03-17 17:47:32.518 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:32.518 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:47:32.528 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:32.528 -07 000000448 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:32.538 -07 000000448 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:32.538 -07 000000448 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:32.538 -07 000000448 INF: Y Motor: Moved to 66.5396 after 1712 ms (table move)
17-03-17 17:47:32.548 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175477 mm (DAC = 38333)
17-03-17 17:47:32.548 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.548 -07 000000569 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:47:32.558 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:32.558 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.558 -07 000000551 INF: FPGA: Recv ZSGSRD 36610
17-03-17 17:47:32.568 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.568 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36612
17-03-17 17:47:32.578 -07 000000478 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.578 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.578 -07 000000569 INF: FPGA: Recv ZSGSRD 36609
17-03-17 17:47:32.588 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.588 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.588 -07 000000459 INF: FPGA: Recv ZSGSRD 36612
17-03-17 17:47:32.598 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.598 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.598 -07 000000551 INF: FPGA: Recv ZSGSRD 36603
17-03-17 17:47:32.608 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.608 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.608 -07 000000459 INF: FPGA: Recv ZSGSRD 36599
17-03-17 17:47:32.618 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.618 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36605
17-03-17 17:47:32.628 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.628 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.628 -07 000000448 INF: FPGA: Recv ZSGSRD 36605
17-03-17 17:47:32.638 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.638 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:32.638 -07 000000569 INF: FPGA: Recv ZSGSRD 36605
17-03-17 17:47:32.648 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.648 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:32.648 -07 000000459 INF: FPGA: Recv ZPIEZORD 32734
17-03-17 17:47:32.658 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:32.658 -07 000000478 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.6 V.
17-03-17 17:47:32.658 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36607 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36606 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36599 (-174.6 uncal um), Max = 36612 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:47:32.658 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36607, posNoise = 5, negNoise = 8
17-03-17 17:47:32.658 -07 000000478 INF: Z Motor: After move to -0.175477, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:32.658 -07 000000478 INF: Z Motor: Settle wait time = 1404 ms, measure time = 108 ms (allowed 150 ms), total time = 1512 ms
17-03-17 17:47:32.658 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:32.708 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1875 ms
17-03-17 17:47:32.708 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:32.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:32.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:32.708 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:32.708 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:32.708 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:32.708 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:32.708 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:47:32.708 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:32.718 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:32.718 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:32.718 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:47:32.718 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:47:32.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:32.768 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:32.968 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:32.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:32.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:32.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1087541352, 0x0, 559484976) start.
17-03-17 17:47:33.008 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:33.008 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:33.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:47:33.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1087541352, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:47:33.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:33.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:33.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:47:33.208 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:33.208 -07 000000475 INF: Autofocus start
17-03-17 17:47:33.208 -07 000000475 INF: MeasureProfile start
17-03-17 17:47:33.208 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:33.218 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:33.218 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:33.218 -07 000000475 INF: MeasureProfile done
17-03-17 17:47:33.218 -07 000000475 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:47:33.218 -07 000000475 INF: Autofocus finished
17-03-17 17:47:33.418 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:33.418 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:33.418 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.175494485884578. ----------
17-03-17 17:47:33.418 -07 000000610 INF: Cycle	5	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:33.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36883, sync = True, waitForSettling = True)
17-03-17 17:47:33.428 -07 000000610 INF: Z Motor: Moving to -0.168840 mm, started at -0.175494 mm, distance = 6.65 um
17-03-17 17:47:33.428 -07 000000610 INF: FPGA: Xmit ZDACW 36883\n [Z Motor]
17-03-17 17:47:33.428 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:47:33.438 -07 000000610 INF: FPGA: 'ZDACW 36883' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:33.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:33.438 -07 000000478 INF: FPGA: Recv ZDACR 36883
17-03-17 17:47:33.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.598 -07 000000475 INF: FPGA: Recv ZSGSRD 35573
17-03-17 17:47:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.608 -07 000000478 INF: FPGA: Recv ZSGSRD 35575
17-03-17 17:47:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.618 -07 000000480 INF: FPGA: Recv ZSGSRD 35567
17-03-17 17:47:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.628 -07 000000478 INF: FPGA: Recv ZSGSRD 35573
17-03-17 17:47:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.638 -07 000000480 INF: FPGA: Recv ZSGSRD 35575
17-03-17 17:47:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35569
17-03-17 17:47:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.658 -07 000000480 INF: FPGA: Recv ZSGSRD 35574
17-03-17 17:47:33.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.668 -07 000000551 INF: FPGA: Recv ZSGSRD 35568
17-03-17 17:47:33.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.678 -07 000000382 INF: FPGA: Recv ZSGSRD 35574
17-03-17 17:47:33.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:33.688 -07 000000475 INF: FPGA: Recv ZSGSRD 35572
17-03-17 17:47:33.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:33.698 -07 000000569 INF: FPGA: Recv ZPIEZORD 31348
17-03-17 17:47:33.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:33.708 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.3 V.
17-03-17 17:47:33.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35572 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35573 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35567 (-167.9 uncal um), Max = 35575 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:47:33.708 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35572, posNoise = 3, negNoise = 5
17-03-17 17:47:33.708 -07 000000610 INF: Z Motor: After move to -0.168840, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:33.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:47:33.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:33.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:33.708 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:33.708 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:33.708 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:33.708 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:33.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:33.708 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:33.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:47:33.708 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:33.708 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 17:47:33.708 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:33.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:33.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:33.718 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:33.718 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:33.728 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:47:33.728 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:47:33.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:47:33.728 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:47:33.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37060 150\n [Camera]
17-03-17 17:47:33.928 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:34.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:34.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:34.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:34.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:34.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:47:34.318 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:34.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:34.318 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:34.318 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:34.318 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:47:34.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37060 775
17-03-17 17:47:34.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:34.698 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:47:34.698 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:47:34.698 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:34.698 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:47:34.698 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:47:34.698 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:34.698 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:34.698 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:47:34.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:34.708 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:47:34.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:34.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:34.848 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:34.848 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:34.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:34.848 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:34.848 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:34.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:47:34.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:34.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1119092496, 0x0, 391868352) start.
17-03-17 17:47:35.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:35.038 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:35.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37060 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:47:35.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:35.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.168845426317856. ------
17-03-17 17:47:35.048 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:35.048 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17559 mm
17-03-17 17:47:35.048 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:35.048 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:47:35.048 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:47:35.048 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38358, sync = True, waitForSettling = False)
17-03-17 17:47:35.048 -07 000000448 INF: Z Motor: Moving to -0.175592 mm, started at -0.168845 mm, distance = -6.75 um
17-03-17 17:47:35.048 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:35.058 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:35.058 -07 000000448 INF: FPGA: Xmit ZDACW 38358\n [Z Motor]
17-03-17 17:47:35.178 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:47:35.188 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:35.188 -07 000000448 INF: FPGA: 'ZDACW 38358' command took 125 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 17:47:35.188 -07 000000475 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:47:35.198 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:35.198 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 144 ms overall
17-03-17 17:47:35.198 -07 000000569 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:35.198 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:35.198 -07 000000569 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:47:35.208 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:35.208 -07 000000618 INF: FPGA: Recv ZDACR 38358
17-03-17 17:47:35.218 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:35.218 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:47:35.218 -07 000000448 INF: Z Motor: MoveAbsStepped took 164 ms (did NOT wait for settling yet))
17-03-17 17:47:35.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:47:35.238 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:47:35.238 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:35.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1119092496, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:47:35.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:47:35.238 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:35.238 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:35.238 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:35.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:47:35.248 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:47:35.398 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:35.398 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 17:47:35.588 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 17:47:35.588 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:47:35.628 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:35.628 -07 000000459 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:47:35.638 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:35.638 -07 000000569 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:35.638 -07 000000569 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:47:35.638 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 17:47:35.688 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.963579,
17-03-17 17:47:36.528 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:36.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:36.588 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:36.588 -07 000000448 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:47:36.598 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.598 -07 000000569 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:36.608 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:36.608 -07 000000569 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:36.608 -07 000000569 INF: Y Motor: Moved to 67.3726 after 1564 ms (table move)
17-03-17 17:47:36.618 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175592 mm (DAC = 38358)
17-03-17 17:47:36.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.618 -07 000000547 INF: FPGA: Recv ZSGSRD 36633
17-03-17 17:47:36.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:36.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36619
17-03-17 17:47:36.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36616
17-03-17 17:47:36.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.648 -07 000000462 INF: FPGA: Recv ZSGSRD 36621
17-03-17 17:47:36.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.658 -07 000000569 INF: FPGA: Recv ZSGSRD 36631
17-03-17 17:47:36.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36631
17-03-17 17:47:36.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.678 -07 000000547 INF: FPGA: Recv ZSGSRD 36624
17-03-17 17:47:36.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.688 -07 000000462 INF: FPGA: Recv ZSGSRD 36620
17-03-17 17:47:36.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.698 -07 000000547 INF: FPGA: Recv ZSGSRD 36617
17-03-17 17:47:36.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:36.708 -07 000000448 INF: FPGA: Recv ZSGSRD 36624
17-03-17 17:47:36.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.718 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:36.718 -07 000000569 INF: FPGA: Recv ZPIEZORD 32761
17-03-17 17:47:36.728 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:36.728 -07 000000382 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.5 V.
17-03-17 17:47:36.728 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36624 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36622 (-174.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36616 (-174.7 uncal um), Max = 36633 (-174.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:47:36.728 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36624, posNoise = 9, negNoise = 8
17-03-17 17:47:36.728 -07 000000382 INF: Z Motor: After move to -0.175592, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:36.728 -07 000000382 INF: Z Motor: Settle wait time = 1567 ms, measure time = 107 ms (allowed 150 ms), total time = 1674 ms
17-03-17 17:47:36.728 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:36.778 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1727 ms
17-03-17 17:47:36.778 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:36.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:36.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:36.778 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:36.778 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:36.778 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:36.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:36.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:36.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:36.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:36.788 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:36.798 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:47:36.798 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:47:36.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:36.848 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:37.038 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:37.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:37.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:37.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:37.078 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:37.078 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:37.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:47:37.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:47:37.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:37.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:37.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:47:37.178 -07 000000569 INF: Autofocus start
17-03-17 17:47:37.178 -07 000000569 INF: MeasureProfile start
17-03-17 17:47:37.178 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:37.178 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:37.188 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:47:37.188 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:37.188 -07 000000569 INF: MeasureProfile done
17-03-17 17:47:37.188 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:47:37.188 -07 000000569 INF: Autofocus finished
17-03-17 17:47:37.388 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:37.388 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:37.388 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.175603697490988. ----------
17-03-17 17:47:37.388 -07 000000610 INF: Cycle	5	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:37.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36890, sync = True, waitForSettling = True)
17-03-17 17:47:37.398 -07 000000610 INF: Z Motor: Moving to -0.168872 mm, started at -0.175604 mm, distance = 6.73 um
17-03-17 17:47:37.398 -07 000000610 INF: FPGA: Xmit ZDACW 36890\n [Z Motor]
17-03-17 17:47:37.398 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 17:47:37.408 -07 000000610 INF: FPGA: 'ZDACW 36890' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:37.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:37.408 -07 000000462 INF: FPGA: Recv ZDACR 36890
17-03-17 17:47:37.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:37.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35581
17-03-17 17:47:37.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:37.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.578 -07 000000569 INF: FPGA: Recv ZSGSRD 35578
17-03-17 17:47:37.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.588 -07 000000382 INF: FPGA: Recv ZSGSRD 35573
17-03-17 17:47:37.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.598 -07 000000569 INF: FPGA: Recv ZSGSRD 35577
17-03-17 17:47:37.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35574
17-03-17 17:47:37.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.618 -07 000000569 INF: FPGA: Recv ZSGSRD 35582
17-03-17 17:47:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35578
17-03-17 17:47:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.638 -07 000000438 INF: FPGA: Recv ZSGSRD 35578
17-03-17 17:47:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35579
17-03-17 17:47:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:37.658 -07 000000438 INF: FPGA: Recv ZSGSRD 35574
17-03-17 17:47:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:37.668 -07 000000547 INF: FPGA: Recv ZPIEZORD 31367
17-03-17 17:47:37.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:37.678 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.3 V.
17-03-17 17:47:37.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35577 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35578 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35573 (-168.0 uncal um), Max = 35582 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:47:37.678 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35577, posNoise = 5, negNoise = 4
17-03-17 17:47:37.678 -07 000000610 INF: Z Motor: After move to -0.168872, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:37.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:47:37.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:37.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:37.678 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:37.678 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:37.678 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:37.678 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:37.678 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:37.678 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:37.678 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:37.678 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:37.678 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:37.678 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:37.688 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:37.688 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:47:37.688 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:37.688 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:37.698 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:47:37.698 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:37.698 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:47:37.698 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:47:37.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37067 150\n [Camera]
17-03-17 17:47:37.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:38.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:38.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:38.288 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:38.288 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:38.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:38.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:38.288 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:38.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:47:38.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:38.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:47:38.478 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37067 775
17-03-17 17:47:38.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:38.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:47:38.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:47:38.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:38.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:47:38.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:47:38.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:38.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:38.668 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:47:38.668 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:38.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:47:38.818 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:38.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:38.818 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:38.818 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:38.818 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 17:47:38.818 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:38.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:38.818 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:38.818 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:38.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 17:47:39.008 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:47:39.008 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:39.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37067 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:47:39.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:39.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.168877547378565. ------
17-03-17 17:47:39.018 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:39.018 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17519 mm
17-03-17 17:47:39.018 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:39.018 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:39.018 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38271, sync = True, waitForSettling = False)
17-03-17 17:47:39.018 -07 000000547 INF: Z Motor: Moving to -0.175193 mm, started at -0.168878 mm, distance = -6.32 um
17-03-17 17:47:39.018 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:47:39.018 -07 000000382 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:47:39.028 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:39.028 -07 000000547 INF: FPGA: Xmit ZDACW 38271\n [Z Motor]
17-03-17 17:47:39.028 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:47:39.038 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:39.038 -07 000000547 INF: FPGA: 'ZDACW 38271' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:47:39.038 -07 000000480 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:47:39.048 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:47:39.048 -07 000000382 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:39.048 -07 000000382 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:39.048 -07 000000382 INF: Y Motor: Moving 1344 steps-21
17-03-17 17:47:39.048 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:39.058 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:39.058 -07 000000476 INF: FPGA: Recv ZDACR 38271
17-03-17 17:47:39.068 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:39.068 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:47:39.068 -07 000000547 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:47:39.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:47:39.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:47:39.198 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:39.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:47:39.198 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:47:39.198 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:39.208 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:39.208 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:47:39.208 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:39.218 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:47:39.248 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:39.248 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 17:47:39.438 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:47:39.438 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:47:39.478 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:39.478 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:47:39.488 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:39.488 -07 000000382 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:39.488 -07 000000382 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:47:39.488 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 17:47:40.438 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:40.438 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:47:40.448 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:40.448 -07 000000382 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:40.458 -07 000000382 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:40.458 -07 000000382 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:40.458 -07 000000382 INF: Y Motor: Moved to 68.2056 after 1441 ms (table move)
17-03-17 17:47:40.468 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175193 mm (DAC = 38271)
17-03-17 17:47:40.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.468 -07 000000382 INF: FPGA: Recv ZSGSRD 36562
17-03-17 17:47:40.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.478 -07 000000382 INF: FPGA: Recv ZSGSRD 36556
17-03-17 17:47:40.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36562
17-03-17 17:47:40.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.498 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.498 -07 000000476 INF: FPGA: Recv ZSGSRD 36569
17-03-17 17:47:40.508 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.508 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.508 -07 000000476 INF: FPGA: Recv ZSGSRD 36567
17-03-17 17:47:40.518 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.518 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.518 -07 000000476 INF: FPGA: Recv ZSGSRD 36567
17-03-17 17:47:40.528 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:40.528 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.528 -07 000000476 INF: FPGA: Recv ZSGSRD 36562
17-03-17 17:47:40.538 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.538 -07 000000448 INF: FPGA: Recv ZSGSRD 36564
17-03-17 17:47:40.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.548 -07 000000448 INF: FPGA: Recv ZSGSRD 36560
17-03-17 17:47:40.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:40.558 -07 000000462 INF: FPGA: Recv ZSGSRD 36561
17-03-17 17:47:40.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:40.568 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:40.568 -07 000000569 INF: FPGA: Recv ZPIEZORD 32649
17-03-17 17:47:40.578 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:40.578 -07 000000627 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.7 V.
17-03-17 17:47:40.578 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36563 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36562 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36556 (-174.3 uncal um), Max = 36569 (-174.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:47:40.578 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36563, posNoise = 6, negNoise = 7
17-03-17 17:47:40.578 -07 000000627 INF: Z Motor: After move to -0.175193, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:40.578 -07 000000627 INF: Z Motor: Settle wait time = 1445 ms, measure time = 110 ms (allowed 150 ms), total time = 1555 ms
17-03-17 17:47:40.578 -07 000000627 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:40.618 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:47:40.618 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:40.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:40.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:40.618 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:40.618 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:40.618 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:40.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:40.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:40.618 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:40.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:40.628 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:40.638 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:47:40.638 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:47:40.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:40.688 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:40.888 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:40.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:40.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:40.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) start.
17-03-17 17:47:40.928 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:40.928 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:40.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:47:40.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:47:40.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:40.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:40.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:47:41.028 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:41.028 -07 000000475 INF: Autofocus start
17-03-17 17:47:41.028 -07 000000475 INF: MeasureProfile start
17-03-17 17:47:41.028 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:41.038 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:41.048 -07 000000475 INF: MeasureProfile done
17-03-17 17:47:41.048 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:47:41.048 -07 000000475 INF: Autofocus finished
17-03-17 17:47:41.048 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:41.048 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.959467,
17-03-17 17:47:41.248 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:41.248 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 17:47:41.248 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175211820550341. ----------
17-03-17 17:47:41.248 -07 000000610 INF: Cycle	5	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:41.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36768, sync = True, waitForSettling = True)
17-03-17 17:47:41.258 -07 000000610 INF: Z Motor: Moving to -0.168313 mm, started at -0.175212 mm, distance = 6.90 um
17-03-17 17:47:41.258 -07 000000610 INF: FPGA: Xmit ZDACW 36768\n [Z Motor]
17-03-17 17:47:41.258 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:47:41.268 -07 000000610 INF: FPGA: 'ZDACW 36768' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:41.268 -07 000000462 INF: FPGA: Recv ZDACR 36768
17-03-17 17:47:41.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:41.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:41.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.428 -07 000000475 INF: FPGA: Recv ZSGSRD 35486
17-03-17 17:47:41.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.438 -07 000000462 INF: FPGA: Recv ZSGSRD 35488
17-03-17 17:47:41.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35491
17-03-17 17:47:41.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.458 -07 000000475 INF: FPGA: Recv ZSGSRD 35489
17-03-17 17:47:41.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35499
17-03-17 17:47:41.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.478 -07 000000475 INF: FPGA: Recv ZSGSRD 35483
17-03-17 17:47:41.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35492
17-03-17 17:47:41.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.498 -07 000000462 INF: FPGA: Recv ZSGSRD 35490
17-03-17 17:47:41.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35490
17-03-17 17:47:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:41.518 -07 000000475 INF: FPGA: Recv ZSGSRD 35502
17-03-17 17:47:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:41.528 -07 000000480 INF: FPGA: Recv ZPIEZORD 31266
17-03-17 17:47:41.528 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:41.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:41.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:41.538 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.3 V.
17-03-17 17:47:41.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35491 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35490 (-167.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35483 (-167.4 uncal um), Max = 35502 (-167.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:47:41.538 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35491, posNoise = 11, negNoise = 8
17-03-17 17:47:41.538 -07 000000610 INF: Z Motor: After move to -0.168313, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:41.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:47:41.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:41.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:41.538 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:41.538 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:41.538 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:41.538 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:41.538 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:41.538 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:41.538 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:47:41.538 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:41.538 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:41.538 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:41.538 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:41.538 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:41.548 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:47:41.548 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:41.548 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:47:41.548 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:47:41.558 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:47:41.558 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:47:41.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36945 150\n [Camera]
17-03-17 17:47:41.758 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:42.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:42.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:42.148 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:42.148 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:42.148 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:47:42.148 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:42.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:42.158 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:42.158 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:42.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:47:42.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36945 775
17-03-17 17:47:42.488 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:42.528 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:47:42.528 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:47:42.528 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:42.528 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:47:42.528 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:47:42.528 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:42.538 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:42.538 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:47:42.538 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:42.538 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:47:42.678 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:42.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:42.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:42.688 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:42.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:42.688 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:42.688 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:47:42.688 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:42.688 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:42.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:47:42.868 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:42.868 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:42.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36945 150' command took 2 ms to send, 1309 ms to get response, and 1315 ms overall
17-03-17 17:47:42.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:42.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168325065134373. ------
17-03-17 17:47:42.878 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:42.878 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17487 mm
17-03-17 17:47:42.878 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:42.878 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:47:42.878 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:47:42.878 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:42.878 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38201, sync = True, waitForSettling = False)
17-03-17 17:47:42.878 -07 000000475 INF: Z Motor: Moving to -0.174873 mm, started at -0.168325 mm, distance = -6.55 um
17-03-17 17:47:42.888 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:47:42.888 -07 000000475 INF: FPGA: Xmit ZDACW 38201\n [Z Motor]
17-03-17 17:47:42.888 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:47:42.898 -07 000000475 INF: FPGA: 'ZDACW 38201' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:42.898 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:42.898 -07 000000480 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:47:42.908 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:42.908 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:47:42.908 -07 000000438 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:42.908 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:43.028 -07 000000438 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:47:43.028 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:43.038 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:43.038 -07 000000480 INF: FPGA: Recv ZDACR 38201
17-03-17 17:47:43.038 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 140 ms overall
17-03-17 17:47:43.038 -07 000000475 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 17:47:43.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 17:47:43.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:47:43.078 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:43.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 17:47:43.078 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:47:43.078 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:43.078 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:43.088 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:47:43.088 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:47:43.088 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 17:47:43.108 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:43.108 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 75 ms to get response, and 222 ms overall
17-03-17 17:47:43.418 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:47:43.418 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 384 ms overall
17-03-17 17:47:43.448 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:43.448 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-17 17:47:43.458 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:47:43.458 -07 000000438 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:43.458 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:47:43.458 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.180 mm/sec
17-03-17 17:47:44.408 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:44.408 -07 000000462 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:47:44.418 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:44.418 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:44.428 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:44.428 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:47:44.428 -07 000000438 INF: Y Motor: Moved to 69.0278 after 1552 ms (table move)
17-03-17 17:47:44.438 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174873 mm (DAC = 38201)
17-03-17 17:47:44.438 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.438 -07 000000448 INF: FPGA: Recv ZSGSRD 36504
17-03-17 17:47:44.448 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:44.448 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.448 -07 000000438 INF: FPGA: Recv ZSGSRD 36510
17-03-17 17:47:44.458 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.458 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.458 -07 000000459 INF: FPGA: Recv ZSGSRD 36519
17-03-17 17:47:44.468 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.468 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.468 -07 000000541 INF: FPGA: Recv ZSGSRD 36514
17-03-17 17:47:44.478 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:44.478 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.478 -07 000000480 INF: FPGA: Recv ZSGSRD 36509
17-03-17 17:47:44.488 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.488 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.488 -07 000000382 INF: FPGA: Recv ZSGSRD 36511
17-03-17 17:47:44.498 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.498 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.498 -07 000000475 INF: FPGA: Recv ZSGSRD 36514
17-03-17 17:47:44.508 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.508 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.508 -07 000000569 INF: FPGA: Recv ZSGSRD 36515
17-03-17 17:47:44.518 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.518 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.518 -07 000000480 INF: FPGA: Recv ZSGSRD 36509
17-03-17 17:47:44.528 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.528 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:44.528 -07 000000618 INF: FPGA: Recv ZSGSRD 36514
17-03-17 17:47:44.538 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.538 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:44.538 -07 000000608 INF: FPGA: Recv ZPIEZORD 32626
17-03-17 17:47:44.548 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:44.548 -07 000000478 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.6 V.
17-03-17 17:47:44.548 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36512 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36512 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36504 (-173.9 uncal um), Max = 36519 (-174.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:47:44.548 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36512, posNoise = 7, negNoise = 8
17-03-17 17:47:44.548 -07 000000478 INF: Z Motor: After move to -0.174873, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:44.548 -07 000000478 INF: Z Motor: Settle wait time = 1553 ms, measure time = 109 ms (allowed 150 ms), total time = 1662 ms
17-03-17 17:47:44.548 -07 000000478 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:44.598 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1715 ms
17-03-17 17:47:44.598 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:44.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:44.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:44.598 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:44.598 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:44.598 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:44.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:44.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:44.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:44.608 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:44.608 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:44.608 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:47:44.608 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:47:44.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:44.658 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:44.858 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:44.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:44.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:44.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:44.898 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:44.898 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:44.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:47:44.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:47:44.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:44.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:44.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:47:44.998 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:44.998 -07 000000480 INF: Autofocus start
17-03-17 17:47:44.998 -07 000000480 INF: MeasureProfile start
17-03-17 17:47:44.998 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:45.008 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:45.008 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:45.008 -07 000000480 INF: MeasureProfile done
17-03-17 17:47:45.008 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:47:45.008 -07 000000480 INF: Autofocus finished
17-03-17 17:47:45.208 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:45.208 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:47:45.208 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.174884185731111. ----------
17-03-17 17:47:45.208 -07 000000610 INF: Cycle	5	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:45.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36716, sync = True, waitForSettling = True)
17-03-17 17:47:45.218 -07 000000610 INF: Z Motor: Moving to -0.168075 mm, started at -0.174884 mm, distance = 6.81 um
17-03-17 17:47:45.218 -07 000000610 INF: FPGA: Xmit ZDACW 36716\n [Z Motor]
17-03-17 17:47:45.218 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:47:45.228 -07 000000610 INF: FPGA: 'ZDACW 36716' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:45.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:45.228 -07 000000569 INF: FPGA: Recv ZDACR 36716
17-03-17 17:47:45.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:45.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.388 -07 000000438 INF: FPGA: Recv ZSGSRD 35457
17-03-17 17:47:45.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:45.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.398 -07 000000462 INF: FPGA: Recv ZSGSRD 35452
17-03-17 17:47:45.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35452
17-03-17 17:47:45.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.418 -07 000000480 INF: FPGA: Recv ZSGSRD 35452
17-03-17 17:47:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.428 -07 000000569 INF: FPGA: Recv ZSGSRD 35451
17-03-17 17:47:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.438 -07 000000569 INF: FPGA: Recv ZSGSRD 35459
17-03-17 17:47:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.448 -07 000000448 INF: FPGA: Recv ZSGSRD 35456
17-03-17 17:47:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35456
17-03-17 17:47:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.468 -07 000000569 INF: FPGA: Recv ZSGSRD 35455
17-03-17 17:47:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:45.478 -07 000000478 INF: FPGA: Recv ZSGSRD 35457
17-03-17 17:47:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:45.488 -07 000000541 INF: FPGA: Recv ZPIEZORD 31247
17-03-17 17:47:45.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:45.498 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.603 V. Piezo Error = -9.3 V.
17-03-17 17:47:45.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35455 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35456 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35451 (-167.2 uncal um), Max = 35459 (-167.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:47:45.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35455, posNoise = 4, negNoise = 4
17-03-17 17:47:45.498 -07 000000610 INF: Z Motor: After move to -0.168075, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:45.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:47:45.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:45.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:45.498 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:45.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:45.498 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:45.498 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:45.498 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:45.498 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:45.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:47:45.498 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:45.498 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:47:45.498 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:45.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:45.508 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:45.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:47:45.508 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:45.518 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:47:45.518 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:47:45.518 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:47:45.518 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:47:45.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36892 150\n [Camera]
17-03-17 17:47:45.718 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:46.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:47:46.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:47:46.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:46.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:47:46.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:47:46.108 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:46.108 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:46.108 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:47:46.118 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:46.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:47:46.298 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36892 775
17-03-17 17:47:46.418 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.956714,
17-03-17 17:47:46.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:46.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:47:46.488 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:47:46.488 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:46.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:47:46.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:47:46.488 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:46.488 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:46.498 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:46.498 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:47:46.498 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:47:46.528 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:46.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:46.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:46.638 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:46.638 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:46.638 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:47:46.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:46.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:46.648 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:46.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:46.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:47:46.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:47:46.828 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:46.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36892 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:47:46.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:46.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.16809379349727. ------
17-03-17 17:47:46.838 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:46.838 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17433 mm
17-03-17 17:47:46.838 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:46.948 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:46.948 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 17:47:46.958 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:46.958 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:47:46.958 -07 000000476 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:47:46.958 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38083, sync = True, waitForSettling = False)
17-03-17 17:47:46.958 -07 000000541 INF: Z Motor: Moving to -0.174333 mm, started at -0.168094 mm, distance = -6.24 um
17-03-17 17:47:46.968 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:46.968 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:47:46.978 -07 000000541 INF: FPGA: Xmit ZDACW 38083\n [Z Motor]
17-03-17 17:47:46.978 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:46.978 -07 000000476 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:46.978 -07 000000476 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:46.978 -07 000000476 INF: Y Motor: Moving 1352 steps-31
17-03-17 17:47:46.978 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:47:46.988 -07 000000541 INF: FPGA: 'ZDACW 38083' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:47:46.988 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:46.988 -07 000000480 INF: FPGA: Recv ZDACR 38083
17-03-17 17:47:46.998 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:46.998 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:46.998 -07 000000541 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:47:47.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:47:47.028 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:47:47.028 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:47.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:47:47.028 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:47:47.028 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:47.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:47.038 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:47:47.038 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:47:47.038 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:47:47.158 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:47.158 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:47:47.368 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:47:47.368 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:47:47.408 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:47.408 -07 000000438 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:47:47.418 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:47.418 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:47.418 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:47:47.418 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 17:47:48.368 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:48.368 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:47:48.378 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.378 -07 000000476 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:48.388 -07 000000476 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:48.388 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:48.388 -07 000000476 INF: Y Motor: Moved to 69.8638 after 1438 ms (table move)
17-03-17 17:47:48.398 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174333 mm (DAC = 38083)
17-03-17 17:47:48.398 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.398 -07 000000459 INF: FPGA: Recv ZSGSRD 36432
17-03-17 17:47:48.408 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:48.408 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.408 -07 000000476 INF: FPGA: Recv ZSGSRD 36422
17-03-17 17:47:48.418 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.418 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.418 -07 000000459 INF: FPGA: Recv ZSGSRD 36427
17-03-17 17:47:48.428 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.428 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.428 -07 000000476 INF: FPGA: Recv ZSGSRD 36430
17-03-17 17:47:48.438 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.438 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.438 -07 000000541 INF: FPGA: Recv ZSGSRD 36432
17-03-17 17:47:48.448 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.448 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.448 -07 000000382 INF: FPGA: Recv ZSGSRD 36432
17-03-17 17:47:48.458 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.458 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.458 -07 000000541 INF: FPGA: Recv ZSGSRD 36424
17-03-17 17:47:48.468 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.468 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.468 -07 000000382 INF: FPGA: Recv ZSGSRD 36435
17-03-17 17:47:48.478 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.478 -07 000000627 INF: FPGA: Recv ZSGSRD 36421
17-03-17 17:47:48.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:48.488 -07 000000541 INF: FPGA: Recv ZSGSRD 36427
17-03-17 17:47:48.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.498 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:48.498 -07 000000382 INF: FPGA: Recv ZPIEZORD 32525
17-03-17 17:47:48.508 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:48.508 -07 000000448 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.6 V.
17-03-17 17:47:48.508 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36428 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36428 (-173.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36421 (-173.4 uncal um), Max = 36435 (-173.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:47:48.508 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36428, posNoise = 7, negNoise = 7
17-03-17 17:47:48.508 -07 000000448 INF: Z Motor: After move to -0.174333, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:48.508 -07 000000448 INF: Z Motor: Settle wait time = 1442 ms, measure time = 107 ms (allowed 150 ms), total time = 1549 ms
17-03-17 17:47:48.508 -07 000000448 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:48.558 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 17:47:48.558 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:48.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:48.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:48.558 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:48.558 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:48.558 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:48.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:48.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:48.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:48.568 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:48.568 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:48.568 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:47:48.568 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:47:48.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:48.618 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:48.818 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:48.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:48.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:48.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:48.858 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:48.858 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:48.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:47:48.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:47:48.938 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:48.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:48.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:47:48.958 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:48.958 -07 000000547 INF: Autofocus start
17-03-17 17:47:48.958 -07 000000547 INF: MeasureProfile start
17-03-17 17:47:48.958 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:48.968 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:48.968 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:48.968 -07 000000547 INF: MeasureProfile done
17-03-17 17:47:48.968 -07 000000547 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:47:48.968 -07 000000547 INF: Autofocus finished
17-03-17 17:47:49.168 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:49.168 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:47:49.168 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174344551911203. ----------
17-03-17 17:47:49.178 -07 000000610 INF: Cycle	5	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:49.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36633, sync = True, waitForSettling = True)
17-03-17 17:47:49.178 -07 000000610 INF: Z Motor: Moving to -0.167695 mm, started at -0.174345 mm, distance = 6.65 um
17-03-17 17:47:49.178 -07 000000610 INF: FPGA: Xmit ZDACW 36633\n [Z Motor]
17-03-17 17:47:49.178 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:47:49.188 -07 000000610 INF: FPGA: 'ZDACW 36633' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:49.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:49.188 -07 000000480 INF: FPGA: Recv ZDACR 36633
17-03-17 17:47:49.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:49.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35395
17-03-17 17:47:49.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:49.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.358 -07 000000382 INF: FPGA: Recv ZSGSRD 35401
17-03-17 17:47:49.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.368 -07 000000627 INF: FPGA: Recv ZSGSRD 35392
17-03-17 17:47:49.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.378 -07 000000459 INF: FPGA: Recv ZSGSRD 35393
17-03-17 17:47:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.388 -07 000000448 INF: FPGA: Recv ZSGSRD 35400
17-03-17 17:47:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.398 -07 000000547 INF: FPGA: Recv ZSGSRD 35396
17-03-17 17:47:49.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.408 -07 000000551 INF: FPGA: Recv ZSGSRD 35391
17-03-17 17:47:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.418 -07 000000459 INF: FPGA: Recv ZSGSRD 35390
17-03-17 17:47:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.428 -07 000000459 INF: FPGA: Recv ZSGSRD 35395
17-03-17 17:47:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:49.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35401
17-03-17 17:47:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:49.448 -07 000000459 INF: FPGA: Recv ZPIEZORD 31149
17-03-17 17:47:49.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:49.458 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.4 V.
17-03-17 17:47:49.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35395 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35395 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35390 (-166.8 uncal um), Max = 35401 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:47:49.458 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35395, posNoise = 6, negNoise = 5
17-03-17 17:47:49.458 -07 000000610 INF: Z Motor: After move to -0.167695, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:49.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:47:49.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:49.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:49.458 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:49.458 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:49.458 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:49.458 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:49.458 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:49.458 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:49.458 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:49.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:49.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:49.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:49.468 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:49.468 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:49.468 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:47:49.468 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:49.468 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:47:49.468 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:47:49.478 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:47:49.478 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:47:49.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36810 150\n [Camera]
17-03-17 17:47:49.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:50.068 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 17:47:50.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 17:47:50.068 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:50.068 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 17:47:50.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 17:47:50.078 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:50.078 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:50.088 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:50.088 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:47:50.088 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 17:47:50.258 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36810 775
17-03-17 17:47:50.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:50.458 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:47:50.458 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:47:50.458 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:50.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:47:50.458 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:47:50.458 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:50.468 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:50.468 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:50.468 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:47:50.468 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:47:50.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:50.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:50.598 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:50.598 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:50.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:50.598 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:50.598 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:50.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:47:50.608 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:50.608 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:47:50.788 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:47:50.788 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:50.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36810 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:47:50.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:50.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167708340768764. ------
17-03-17 17:47:50.798 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:50.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:47:50.978 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:47:50.978 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:50.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:47:50.978 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:47:50.978 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:50.988 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:50.988 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:47:50.988 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:47:50.988 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:47:50.998 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:50.998 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 199 ms to get response, and 209 ms overall
17-03-17 17:47:51.008 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17412 mm
17-03-17 17:47:51.008 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:51.008 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:51.008 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:47:51.008 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:47:51.018 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:51.728 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38035, sync = True, waitForSettling = False)
17-03-17 17:47:51.728 -07 000000462 INF: Z Motor: Moving to -0.174113 mm, started at -0.167708 mm, distance = -6.40 um
17-03-17 17:47:51.728 -07 000000462 INF: FPGA: Xmit ZDACW 38035\n [Z Motor]
17-03-17 17:47:52.258 -07 000000608 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:47:52.258 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:52.258 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1230 ms to get response, and 1248 ms overall
17-03-17 17:47:52.258 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:52.258 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:47:52.258 -07 000000462 INF: FPGA: 'ZDACW 38035' command took 0 ms to send, 521 ms to get response, and 529 ms overall
17-03-17 17:47:52.258 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:52.258 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1240 ms to get response, and 1250 ms overall
17-03-17 17:47:52.258 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:52.258 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:52.258 -07 000000623 INF: Y Motor: Moving 1342 steps-18
17-03-17 17:47:52.258 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:52.258 -07 000000459 INF: FPGA: Recv ZDACR 38035
17-03-17 17:47:52.268 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:52.268 -07 000000462 INF: Z Motor: MoveAbsStepped took 538 ms (did NOT wait for settling yet))
17-03-17 17:47:52.268 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:52.568 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.963579,
17-03-17 17:47:52.648 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:47:52.648 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-17 17:47:52.678 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:52.678 -07 000000480 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:47:52.688 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:47:52.688 -07 000000623 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:52.688 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:47:52.688 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 17:47:53.638 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:53.638 -07 000000480 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:47:53.648 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:53.648 -07 000000623 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:53.668 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:53.668 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:53.668 -07 000000623 INF: Y Motor: Moved to 70.6890 after 2659 ms (table move)
17-03-17 17:47:53.668 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174113 mm (DAC = 38035)
17-03-17 17:47:53.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.668 -07 000000608 INF: FPGA: Recv ZSGSRD 36399
17-03-17 17:47:53.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:47:53.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.678 -07 000000623 INF: FPGA: Recv ZSGSRD 36398
17-03-17 17:47:53.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.688 -07 000000480 INF: FPGA: Recv ZSGSRD 36392
17-03-17 17:47:53.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.698 -07 000000608 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:47:53.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36398
17-03-17 17:47:53.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.718 -07 000000462 INF: FPGA: Recv ZSGSRD 36390
17-03-17 17:47:53.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.728 -07 000000480 INF: FPGA: Recv ZSGSRD 36393
17-03-17 17:47:53.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.738 -07 000000478 INF: FPGA: Recv ZSGSRD 36389
17-03-17 17:47:53.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.748 -07 000000608 INF: FPGA: Recv ZSGSRD 36395
17-03-17 17:47:53.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:53.758 -07 000000462 INF: FPGA: Recv ZSGSRD 36397
17-03-17 17:47:53.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.768 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:53.768 -07 000000608 INF: FPGA: Recv ZPIEZORD 32457
17-03-17 17:47:53.778 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:53.778 -07 000000475 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.7 V.
17-03-17 17:47:53.778 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36394 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36394 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36389 (-173.2 uncal um), Max = 36399 (-173.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:47:53.778 -07 000000475 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36394, posNoise = 5, negNoise = 5
17-03-17 17:47:53.778 -07 000000475 INF: Z Motor: After move to -0.174113, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:53.778 -07 000000475 INF: Z Motor: Settle wait time = 1943 ms, measure time = 106 ms (allowed 150 ms), total time = 2049 ms
17-03-17 17:47:53.778 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:47:53.828 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2820 ms
17-03-17 17:47:53.828 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:53.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:53.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:53.828 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:53.828 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:53.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:53.828 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:53.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:53.828 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:53.838 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:53.838 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:53.838 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:47:53.838 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:47:53.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:53.888 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:54.088 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:54.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:54.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:54.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1493765392, 0x0, 559484976) start.
17-03-17 17:47:54.128 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:54.128 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:54.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:47:54.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1493765392, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:47:54.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:54.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:47:54.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:47:54.228 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:54.228 -07 000000475 INF: Autofocus start
17-03-17 17:47:54.228 -07 000000475 INF: MeasureProfile start
17-03-17 17:47:54.228 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:54.238 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:54.238 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:54.238 -07 000000475 INF: MeasureProfile done
17-03-17 17:47:54.238 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:47:54.238 -07 000000475 INF: Autofocus finished
17-03-17 17:47:54.438 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:54.438 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:47:54.438 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174126128698383. ----------
17-03-17 17:47:54.438 -07 000000610 INF: Cycle	5	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:54.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36568, sync = True, waitForSettling = True)
17-03-17 17:47:54.448 -07 000000610 INF: Z Motor: Moving to -0.167398 mm, started at -0.174126 mm, distance = 6.73 um
17-03-17 17:47:54.448 -07 000000610 INF: FPGA: Xmit ZDACW 36568\n [Z Motor]
17-03-17 17:47:54.448 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:47:54.458 -07 000000610 INF: FPGA: 'ZDACW 36568' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:54.458 -07 000000459 INF: FPGA: Recv ZDACR 36568
17-03-17 17:47:54.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:54.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.618 -07 000000475 INF: FPGA: Recv ZSGSRD 35353
17-03-17 17:47:54.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:47:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.628 -07 000000480 INF: FPGA: Recv ZSGSRD 35350
17-03-17 17:47:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.638 -07 000000438 INF: FPGA: Recv ZSGSRD 35346
17-03-17 17:47:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.648 -07 000000480 INF: FPGA: Recv ZSGSRD 35342
17-03-17 17:47:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.658 -07 000000438 INF: FPGA: Recv ZSGSRD 35349
17-03-17 17:47:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35342
17-03-17 17:47:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.678 -07 000000478 INF: FPGA: Recv ZSGSRD 35344
17-03-17 17:47:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35348
17-03-17 17:47:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.698 -07 000000438 INF: FPGA: Recv ZSGSRD 35352
17-03-17 17:47:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:54.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35345
17-03-17 17:47:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:54.718 -07 000000475 INF: FPGA: Recv ZPIEZORD 31058
17-03-17 17:47:54.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:54.728 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.5 V.
17-03-17 17:47:54.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35347 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35347 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35342 (-166.5 uncal um), Max = 35353 (-166.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:47:54.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35347, posNoise = 6, negNoise = 5
17-03-17 17:47:54.728 -07 000000610 INF: Z Motor: After move to -0.167398, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:54.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:47:54.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:54.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:54.728 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:54.728 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:54.728 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:54.728 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:54.728 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:54.728 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:54.728 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:54.728 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:54.728 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:54.728 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:54.738 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:47:54.738 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:54.738 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:47:54.738 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:54.748 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:47:54.748 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:47:54.748 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:47:54.748 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:47:54.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36745 150\n [Camera]
17-03-17 17:47:54.948 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:47:55.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 17:47:55.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 17:47:55.348 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:55.348 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:55.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:47:55.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 17:47:55.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 17:47:55.348 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:55.348 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:55.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:47:55.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36745 775
17-03-17 17:47:55.688 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:47:55.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:47:55.748 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:47:55.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:55.748 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 17:47:55.748 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:47:55.748 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:55.748 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:55.748 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:47:55.748 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:47:55.758 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:47:55.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:47:55.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:47:55.878 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:47:55.878 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:47:55.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) start.
17-03-17 17:47:55.878 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:47:55.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:47:55.878 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:47:55.878 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:47:55.878 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:47:56.068 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:47:56.068 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:47:56.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36745 150' command took 2 ms to send, 1301 ms to get response, and 1313 ms overall
17-03-17 17:47:56.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:47:56.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.16739997858596. ------
17-03-17 17:47:56.188 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:56.188 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17415 mm
17-03-17 17:47:56.188 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:47:56.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 17:47:56.278 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:47:56.278 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:56.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 17:47:56.278 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:47:56.278 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:56.288 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:47:56.288 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:47:56.288 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 17:47:56.288 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:47:56.298 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:56.298 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 104 ms to get response, and 106 ms overall
17-03-17 17:47:56.298 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:47:56.298 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:47:56.298 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:47:56.298 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38043, sync = True, waitForSettling = False)
17-03-17 17:47:56.308 -07 000000623 INF: Z Motor: Moving to -0.174150 mm, started at -0.167400 mm, distance = -6.75 um
17-03-17 17:47:56.308 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:56.318 -07 000000623 INF: FPGA: Xmit ZDACW 38043\n [Z Motor]
17-03-17 17:47:57.258 -07 000000551 INF: FPGA: Recv YRDPOS 144772
17-03-17 17:47:57.258 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:47:57.258 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:47:57.258 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:47:57.258 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 950 ms to get response, and 955 ms overall
17-03-17 17:47:57.258 -07 000000623 INF: FPGA: 'ZDACW 38043' command took 0 ms to send, 930 ms to get response, and 950 ms overall
17-03-17 17:47:57.258 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:47:57.258 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:57.258 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 940 ms to get response, and 954 ms overall
17-03-17 17:47:57.258 -07 000000459 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:57.258 -07 000000478 INF: FPGA: Recv ZDACR 38043
17-03-17 17:47:57.268 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:47:57.268 -07 000000623 INF: Z Motor: MoveAbsStepped took 960 ms (did NOT wait for settling yet))
17-03-17 17:47:57.268 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:47:57.268 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:47:57.268 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:47:57.648 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:47:57.648 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 17:47:57.678 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:57.678 -07 000000478 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:47:57.688 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:57.688 -07 000000459 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:57.688 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:47:57.688 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 17:47:57.928 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.945808,
17-03-17 17:47:58.638 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:47:58.638 -07 000000478 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:47:58.648 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.648 -07 000000459 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:47:58.658 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:47:58.668 -07 000000459 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:47:58.668 -07 000000459 INF: Y Motor: Moved to 71.5195 after 2364 ms (table move)
17-03-17 17:47:58.668 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174150 mm (DAC = 38043)
17-03-17 17:47:58.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.668 -07 000000478 INF: FPGA: Recv ZSGSRD 36399
17-03-17 17:47:58.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:47:58.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36407
17-03-17 17:47:58.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.688 -07 000000623 INF: FPGA: Recv ZSGSRD 36402
17-03-17 17:47:58.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.698 -07 000000618 INF: FPGA: Recv ZSGSRD 36397
17-03-17 17:47:58.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.708 -07 000000541 INF: FPGA: Recv ZSGSRD 36391
17-03-17 17:47:58.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.728 -07 000000547 INF: FPGA: Recv ZSGSRD 36401
17-03-17 17:47:58.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:58.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36399
17-03-17 17:47:58.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:58.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.758 -07 000000618 INF: FPGA: Recv ZSGSRD 36402
17-03-17 17:47:58.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.778 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.778 -07 000000618 INF: FPGA: Recv ZSGSRD 36397
17-03-17 17:47:58.788 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:47:58.788 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:58.788 -07 000000623 INF: FPGA: Recv ZSGSRD 36394
17-03-17 17:47:58.798 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:58.818 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:58.818 -07 000000551 INF: FPGA: Recv ZPIEZORD 32488
17-03-17 17:47:58.828 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:47:58.828 -07 000000475 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.805 V. Piezo Error = -8.6 V.
17-03-17 17:47:58.828 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36399 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36399 (-173.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36391 (-173.2 uncal um), Max = 36407 (-173.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:47:58.828 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36399, posNoise = 8, negNoise = 8
17-03-17 17:47:58.828 -07 000000475 INF: Z Motor: After move to -0.174150, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:58.828 -07 000000475 INF: Z Motor: Settle wait time = 2363 ms, measure time = 157 ms (allowed 150 ms), total time = 2520 ms
17-03-17 17:47:58.828 -07 000000475 INF: Z Motor: Warning: Actual position measuring time = 157 ms, longer than max expected time of 150 ms
17-03-17 17:47:58.828 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2631 ms
17-03-17 17:47:58.828 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:47:58.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:58.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:58.828 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:58.828 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:47:58.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:58.828 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:58.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:58.828 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:47:58.838 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:58.838 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:47:58.848 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:47:58.848 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:47:58.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:47:58.898 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:47:59.088 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:47:59.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:47:59.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:47:59.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:47:59.128 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:47:59.138 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:47:59.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 17:47:59.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:47:59.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:47:59.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:47:59.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:47:59.238 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:47:59.238 -07 000000541 INF: Autofocus start
17-03-17 17:47:59.238 -07 000000541 INF: MeasureProfile start
17-03-17 17:47:59.248 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:47:59.248 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 17:47:59.248 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:47:59.248 -07 000000541 INF: MeasureProfile done
17-03-17 17:47:59.248 -07 000000541 INF: X=-96  Z correction [um]=-0.5732754
17-03-17 17:47:59.248 -07 000000541 INF: Autofocus finished
17-03-17 17:47:59.448 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:47:59.448 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:47:59.448 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174158249759092. ----------
17-03-17 17:47:59.458 -07 000000610 INF: Cycle	5	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:47:59.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36430, sync = True, waitForSettling = True)
17-03-17 17:47:59.458 -07 000000610 INF: Z Motor: Moving to -0.166766 mm, started at -0.174158 mm, distance = 7.39 um
17-03-17 17:47:59.458 -07 000000610 INF: FPGA: Xmit ZDACW 36430\n [Z Motor]
17-03-17 17:47:59.458 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:47:59.468 -07 000000610 INF: FPGA: 'ZDACW 36430' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:47:59.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:47:59.468 -07 000000478 INF: FPGA: Recv ZDACR 36430
17-03-17 17:47:59.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:47:59.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.628 -07 000000623 INF: FPGA: Recv ZSGSRD 35249
17-03-17 17:47:59.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35254
17-03-17 17:47:59.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.648 -07 000000623 INF: FPGA: Recv ZSGSRD 35241
17-03-17 17:47:59.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.658 -07 000000475 INF: FPGA: Recv ZSGSRD 35247
17-03-17 17:47:59.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.668 -07 000000478 INF: FPGA: Recv ZSGSRD 35248
17-03-17 17:47:59.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.678 -07 000000475 INF: FPGA: Recv ZSGSRD 35252
17-03-17 17:47:59.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.688 -07 000000478 INF: FPGA: Recv ZSGSRD 35254
17-03-17 17:47:59.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.698 -07 000000475 INF: FPGA: Recv ZSGSRD 35244
17-03-17 17:47:59.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35247
17-03-17 17:47:59.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:47:59.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35245
17-03-17 17:47:59.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:47:59.728 -07 000000618 INF: FPGA: Recv ZPIEZORD 30958
17-03-17 17:47:59.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:47:59.738 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.5 V.
17-03-17 17:47:59.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35248 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35241 (-165.9 uncal um), Max = 35254 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:47:59.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35248, posNoise = 6, negNoise = 7
17-03-17 17:47:59.738 -07 000000610 INF: Z Motor: After move to -0.166766, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:47:59.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:47:59.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:47:59.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:47:59.738 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:47:59.738 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:47:59.738 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:47:59.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:47:59.738 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:47:59.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:47:59.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:47:59.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:47:59.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:47:59.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:47:59.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:47:59.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:47:59.748 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:47:59.748 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:47:59.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:47:59.758 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:47:59.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:47:59.758 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:47:59.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36607 150\n [Camera]
17-03-17 17:47:59.958 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:00.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:00.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:00.348 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:00.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:00.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:00.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:00.358 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:00.358 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:48:00.358 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:00.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:48:00.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36607 775
17-03-17 17:48:00.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:00.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:48:00.738 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:48:00.738 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:00.738 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:48:00.738 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:00.738 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:00.738 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:00.738 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:00.738 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:48:00.748 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:48:00.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:00.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:00.878 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:00.888 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:00.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:00.888 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:00.888 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:00.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 17:48:00.898 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:00.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:48:01.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:01.068 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:01.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36607 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-17 17:48:01.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:48:01.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.166763981583925. ------
17-03-17 17:48:01.078 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:01.078 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17268 mm
17-03-17 17:48:01.078 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:01.078 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:48:01.078 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:48:01.088 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:01.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:48:01.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:48:01.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:01.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:48:01.298 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:48:01.298 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:01.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:01.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-17 17:48:01.418 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 122 ms.
17-03-17 17:48:01.428 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 542 ms.
17-03-17 17:48:01.438 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:01.438 -07 000000551 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:48:01.438 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 345 ms to get response, and 358 ms overall
17-03-17 17:48:01.438 -07 000000569 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:01.438 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:01.438 -07 000000569 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:48:01.438 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37723, sync = True, waitForSettling = False)
17-03-17 17:48:01.438 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:01.438 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 355 ms to get response, and 361 ms overall
17-03-17 17:48:01.438 -07 000000618 INF: Z Motor: Moving to -0.172685 mm, started at -0.166764 mm, distance = -5.92 um
17-03-17 17:48:01.448 -07 000000618 INF: FPGA: Xmit ZDACW 37723\n [Z Motor]
17-03-17 17:48:01.448 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:48:01.458 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:01.458 -07 000000618 INF: FPGA: 'ZDACW 37723' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:48:01.468 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:01.468 -07 000000551 INF: FPGA: Recv ZDACR 37723
17-03-17 17:48:01.478 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:01.478 -07 000000618 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 17:48:01.528 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:01.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:01.658 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:01.658 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 215 ms overall
17-03-17 17:48:01.818 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:48:01.818 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 377 ms to get response, and 380 ms overall
17-03-17 17:48:01.848 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:01.858 -07 000000618 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:48:01.858 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:48:01.858 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:01.858 -07 000000569 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:48:01.858 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.843 mm, average velocity = 2.219 mm/sec
17-03-17 17:48:02.808 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:02.808 -07 000000547 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:48:02.818 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:02.818 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:02.828 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:02.838 -07 000000569 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:02.838 -07 000000569 INF: Y Motor: Moved to 72.3501 after 1752 ms (table move)
17-03-17 17:48:02.838 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172685 mm (DAC = 37723)
17-03-17 17:48:02.838 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.838 -07 000000547 INF: FPGA: Recv ZSGSRD 36174
17-03-17 17:48:02.848 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:02.848 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.848 -07 000000547 INF: FPGA: Recv ZSGSRD 36168
17-03-17 17:48:02.858 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.858 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.858 -07 000000618 INF: FPGA: Recv ZSGSRD 36172
17-03-17 17:48:02.868 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.868 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.868 -07 000000551 INF: FPGA: Recv ZSGSRD 36172
17-03-17 17:48:02.878 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.878 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.878 -07 000000547 INF: FPGA: Recv ZSGSRD 36168
17-03-17 17:48:02.888 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.888 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.888 -07 000000618 INF: FPGA: Recv ZSGSRD 36175
17-03-17 17:48:02.898 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.898 -07 000000618 INF: FPGA: Recv ZSGSRD 36172
17-03-17 17:48:02.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.908 -07 000000618 INF: FPGA: Recv ZSGSRD 36167
17-03-17 17:48:02.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.918 -07 000000618 INF: FPGA: Recv ZSGSRD 36169
17-03-17 17:48:02.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:02.928 -07 000000547 INF: FPGA: Recv ZSGSRD 36175
17-03-17 17:48:02.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.938 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:02.938 -07 000000618 INF: FPGA: Recv ZPIEZORD 32214
17-03-17 17:48:02.948 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:02.948 -07 000000476 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.7 V.
17-03-17 17:48:02.948 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36171 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36167 (-171.8 uncal um), Max = 36175 (-171.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:48:02.948 -07 000000476 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36171, posNoise = 4, negNoise = 4
17-03-17 17:48:02.948 -07 000000476 INF: Z Motor: After move to -0.172685, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:02.948 -07 000000476 INF: Z Motor: Settle wait time = 1395 ms, measure time = 107 ms (allowed 150 ms), total time = 1502 ms
17-03-17 17:48:02.948 -07 000000476 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:02.998 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1915 ms
17-03-17 17:48:02.998 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:02.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:02.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:02.998 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:02.998 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:02.998 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:02.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:02.998 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:48:03.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:03.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:03.008 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:03.008 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:48:03.008 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:48:03.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:03.058 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:03.258 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:03.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:03.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:03.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:48:03.288 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.944485,
17-03-17 17:48:03.298 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:03.298 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:03.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:48:03.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:48:03.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:03.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:03.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:48:03.398 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:03.398 -07 000000551 INF: Autofocus start
17-03-17 17:48:03.398 -07 000000551 INF: MeasureProfile start
17-03-17 17:48:03.398 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:03.408 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:48:03.408 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:03.408 -07 000000551 INF: MeasureProfile done
17-03-17 17:48:03.418 -07 000000551 INF: X=128  Z correction [um]=0.5828849
17-03-17 17:48:03.418 -07 000000551 INF: Autofocus finished
17-03-17 17:48:03.608 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:03.608 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:03.608 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.172693529390771. ----------
17-03-17 17:48:03.608 -07 000000610 INF: Cycle	5	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:03.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36363, sync = True, waitForSettling = True)
17-03-17 17:48:03.618 -07 000000610 INF: Z Motor: Moving to -0.166459 mm, started at -0.172694 mm, distance = 6.23 um
17-03-17 17:48:03.618 -07 000000610 INF: FPGA: Xmit ZDACW 36363\n [Z Motor]
17-03-17 17:48:03.618 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 17:48:03.628 -07 000000610 INF: FPGA: 'ZDACW 36363' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:03.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:03.628 -07 000000448 INF: FPGA: Recv ZDACR 36363
17-03-17 17:48:03.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.788 -07 000000547 INF: FPGA: Recv ZSGSRD 35209
17-03-17 17:48:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.798 -07 000000551 INF: FPGA: Recv ZSGSRD 35203
17-03-17 17:48:03.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35201
17-03-17 17:48:03.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.828 -07 000000569 INF: FPGA: Recv ZSGSRD 35203
17-03-17 17:48:03.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:03.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.838 -07 000000551 INF: FPGA: Recv ZSGSRD 35196
17-03-17 17:48:03.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35205
17-03-17 17:48:03.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.858 -07 000000627 INF: FPGA: Recv ZSGSRD 35211
17-03-17 17:48:03.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.868 -07 000000476 INF: FPGA: Recv ZSGSRD 35201
17-03-17 17:48:03.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.878 -07 000000608 INF: FPGA: Recv ZSGSRD 35202
17-03-17 17:48:03.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:03.888 -07 000000547 INF: FPGA: Recv ZSGSRD 35204
17-03-17 17:48:03.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:03.898 -07 000000448 INF: FPGA: Recv ZPIEZORD 30928
17-03-17 17:48:03.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:03.908 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-17 17:48:03.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35203 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35196 (-165.6 uncal um), Max = 35211 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:48:03.908 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 7, negNoise = 8
17-03-17 17:48:03.908 -07 000000610 INF: Z Motor: After move to -0.166459, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:03.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:48:03.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:03.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:03.908 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:03.908 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:03.908 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:03.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:03.908 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:03.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:03.908 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:03.908 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:03.908 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:03.908 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:03.918 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:03.918 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:03.918 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:03.918 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:03.918 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:48:03.928 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:48:03.928 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:03.928 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:03.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36540 150\n [Camera]
17-03-17 17:48:04.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:04.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:04.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:04.518 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:04.518 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:04.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:04.518 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:04.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:04.518 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:04.518 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:04.518 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:48:04.708 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36540 775
17-03-17 17:48:04.858 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:04.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:48:04.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:48:04.918 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:04.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 17:48:04.918 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:48:04.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:04.918 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:04.918 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:48:04.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:04.928 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:48:05.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:48:05.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:48:05.048 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:05.048 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:05.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:48:05.048 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:48:05.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:48:05.048 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:05.048 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:05.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:48:05.238 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:48:05.238 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:05.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36540 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:48:05.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:48:05.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166481316249688. ------
17-03-17 17:48:05.248 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:05.248 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17297 mm
17-03-17 17:48:05.248 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:05.448 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:48:05.448 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:48:05.448 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:05.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:48:05.458 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:48:05.458 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:05.458 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:05.458 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:48:05.458 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:48:05.468 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:48:05.478 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:48:05.478 -07 000000547 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:48:05.478 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:05.478 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:05.478 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:48:05.478 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 235 ms overall
17-03-17 17:48:05.478 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37786, sync = True, waitForSettling = False)
17-03-17 17:48:05.478 -07 000000551 INF: Z Motor: Moving to -0.172973 mm, started at -0.166481 mm, distance = -6.49 um
17-03-17 17:48:05.488 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:05.488 -07 000000547 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:05.488 -07 000000547 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:05.488 -07 000000547 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:48:05.488 -07 000000551 INF: FPGA: Xmit ZDACW 37786\n [Z Motor]
17-03-17 17:48:05.498 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:05.508 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:06.258 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:48:06.258 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:06.258 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:48:06.258 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 750 ms to get response, and 775 ms overall
17-03-17 17:48:06.258 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 740 ms to get response, and 770 ms overall
17-03-17 17:48:06.258 -07 000000551 INF: FPGA: 'ZDACW 37786' command took 0 ms to send, 760 ms to get response, and 774 ms overall
17-03-17 17:48:06.258 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:06.258 -07 000000569 INF: FPGA: Recv ZDACR 37786
17-03-17 17:48:06.268 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:06.268 -07 000000551 INF: Z Motor: MoveAbsStepped took 783 ms (did NOT wait for settling yet))
17-03-17 17:48:06.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:06.288 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:48:06.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:06.298 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:06.298 -07 000000547 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:48:06.298 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 770 ms, distance = 0.843 mm, average velocity = 1.094 mm/sec
17-03-17 17:48:06.528 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:06.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:07.248 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:07.248 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:48:07.258 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:07.258 -07 000000547 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:07.278 -07 000000547 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:07.278 -07 000000547 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:07.278 -07 000000547 INF: Y Motor: Moved to 73.1763 after 1800 ms (table move)
17-03-17 17:48:07.288 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172973 mm (DAC = 37786)
17-03-17 17:48:07.288 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.288 -07 000000569 INF: FPGA: Recv ZSGSRD 36221
17-03-17 17:48:07.298 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:07.298 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.298 -07 000000547 INF: FPGA: Recv ZSGSRD 36219
17-03-17 17:48:07.308 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.308 -07 000000438 INF: FPGA: Recv ZSGSRD 36211
17-03-17 17:48:07.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.318 -07 000000569 INF: FPGA: Recv ZSGSRD 36216
17-03-17 17:48:07.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.328 -07 000000569 INF: FPGA: Recv ZSGSRD 36212
17-03-17 17:48:07.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36219
17-03-17 17:48:07.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:48:07.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.358 -07 000000547 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:48:07.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.368 -07 000000569 INF: FPGA: Recv ZSGSRD 36218
17-03-17 17:48:07.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:07.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36211
17-03-17 17:48:07.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.388 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:07.388 -07 000000569 INF: FPGA: Recv ZPIEZORD 32283
17-03-17 17:48:07.398 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:07.398 -07 000000608 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.7 V.
17-03-17 17:48:07.398 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36216 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36216 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36211 (-172.1 uncal um), Max = 36221 (-172.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:48:07.398 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36216, posNoise = 5, negNoise = 5
17-03-17 17:48:07.398 -07 000000608 INF: Z Motor: After move to -0.172973, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:07.398 -07 000000608 INF: Z Motor: Settle wait time = 1805 ms, measure time = 109 ms (allowed 150 ms), total time = 1914 ms
17-03-17 17:48:07.398 -07 000000608 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:07.448 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2199 ms
17-03-17 17:48:07.448 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:07.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:07.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:07.448 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:07.448 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:07.458 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:07.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:07.458 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:07.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:07.458 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:07.458 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:07.468 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:48:07.468 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:48:07.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:07.518 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:07.718 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:07.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:07.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:07.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 17:48:07.758 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:07.758 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:07.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:48:07.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:48:07.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:07.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:48:07.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:48:07.858 -07 000000438 INF: Autofocus start
17-03-17 17:48:07.858 -07 000000438 INF: MeasureProfile start
17-03-17 17:48:07.858 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:07.858 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:07.868 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:48:07.868 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:07.868 -07 000000438 INF: MeasureProfile done
17-03-17 17:48:07.868 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:48:07.868 -07 000000438 INF: Autofocus finished
17-03-17 17:48:08.068 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:08.068 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:08.068 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.17298261893715. ----------
17-03-17 17:48:08.068 -07 000000610 INF: Cycle	5	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:08.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36301, sync = True, waitForSettling = True)
17-03-17 17:48:08.078 -07 000000610 INF: Z Motor: Moving to -0.166175 mm, started at -0.172983 mm, distance = 6.81 um
17-03-17 17:48:08.078 -07 000000610 INF: FPGA: Xmit ZDACW 36301\n [Z Motor]
17-03-17 17:48:08.078 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:48:08.088 -07 000000610 INF: FPGA: 'ZDACW 36301' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:08.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:08.088 -07 000000551 INF: FPGA: Recv ZDACR 36301
17-03-17 17:48:08.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.248 -07 000000459 INF: FPGA: Recv ZSGSRD 35160
17-03-17 17:48:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.258 -07 000000569 INF: FPGA: Recv ZSGSRD 35160
17-03-17 17:48:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.268 -07 000000547 INF: FPGA: Recv ZSGSRD 35162
17-03-17 17:48:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.278 -07 000000551 INF: FPGA: Recv ZSGSRD 35155
17-03-17 17:48:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.288 -07 000000547 INF: FPGA: Recv ZSGSRD 35156
17-03-17 17:48:08.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.298 -07 000000475 INF: FPGA: Recv ZSGSRD 35164
17-03-17 17:48:08.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35160
17-03-17 17:48:08.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.318 -07 000000462 INF: FPGA: Recv ZSGSRD 35157
17-03-17 17:48:08.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.338 -07 000000475 INF: FPGA: Recv ZSGSRD 35158
17-03-17 17:48:08.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:08.348 -07 000000459 INF: FPGA: Recv ZSGSRD 35159
17-03-17 17:48:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:08.358 -07 000000569 INF: FPGA: Recv ZPIEZORD 30874
17-03-17 17:48:08.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:08.368 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-17 17:48:08.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35159 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35160 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35155 (-165.3 uncal um), Max = 35164 (-165.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:48:08.368 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35159, posNoise = 5, negNoise = 4
17-03-17 17:48:08.368 -07 000000610 INF: Z Motor: After move to -0.166175, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:08.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 17:48:08.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:08.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:08.368 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:08.368 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:08.368 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:08.368 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:08.368 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:08.368 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:08.368 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:08.368 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:08.368 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:08.368 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:08.378 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:08.378 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:08.378 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:08.378 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:08.388 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:48:08.388 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:48:08.388 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:48:08.388 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:08.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36478 150\n [Camera]
17-03-17 17:48:08.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:08.648 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.974486,
17-03-17 17:48:08.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:08.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:08.978 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:08.978 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:08.978 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113227024, 0x0, 391868352) start.
17-03-17 17:48:08.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:08.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:08.978 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:09.098 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:09.098 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:48:09.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36478 775
17-03-17 17:48:09.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:09.358 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113227024, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:48:09.358 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:48:09.358 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:09.368 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:09.368 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:48:09.468 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:48:09.468 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:48:09.468 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:09.468 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:48:09.478 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 17:48:09.508 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:09.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:09.508 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:09.508 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:09.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:09.508 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:09.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:09.508 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:09.508 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:09.508 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:48:09.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:48:09.698 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:09.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36478 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 17:48:09.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:48:09.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166192226703308. ------
17-03-17 17:48:09.708 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:09.708 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17252 mm
17-03-17 17:48:09.708 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:09.708 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:09.708 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:48:09.708 -07 000000551 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:48:09.708 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37686, sync = True, waitForSettling = False)
17-03-17 17:48:09.708 -07 000000459 INF: Z Motor: Moving to -0.172515 mm, started at -0.166192 mm, distance = -6.32 um
17-03-17 17:48:09.718 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:09.718 -07 000000459 INF: FPGA: Xmit ZDACW 37686\n [Z Motor]
17-03-17 17:48:09.718 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:48:09.728 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:09.728 -07 000000459 INF: FPGA: 'ZDACW 37686' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:48:09.728 -07 000000541 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:48:09.738 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:48:09.738 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:09.738 -07 000000551 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:09.738 -07 000000551 INF: Y Motor: Moving 1354 steps-33
17-03-17 17:48:09.738 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:09.748 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:09.748 -07 000000462 INF: FPGA: Recv ZDACR 37686
17-03-17 17:48:09.758 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:09.758 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:09.758 -07 000000459 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 17:48:09.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 17:48:09.918 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:48:09.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:09.918 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 17:48:09.918 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 17:48:09.918 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:09.918 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:09.918 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:48:09.918 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:09.928 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 17:48:09.938 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:09.938 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 17:48:10.128 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:48:10.128 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:48:10.158 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:10.158 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 17:48:10.168 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:10.168 -07 000000551 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:10.168 -07 000000551 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:48:10.168 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 17:48:11.118 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:11.118 -07 000000547 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:48:11.128 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:11.128 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:11.138 -07 000000551 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:11.138 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:48:11.138 -07 000000551 INF: Y Motor: Moved to 74.0088 after 1426 ms (table move)
17-03-17 17:48:11.138 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172515 mm (DAC = 37686)
17-03-17 17:48:11.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.148 -07 000000462 INF: FPGA: Recv ZSGSRD 36147
17-03-17 17:48:11.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:48:11.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36149
17-03-17 17:48:11.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.158 -07 000000547 INF: FPGA: Recv ZSGSRD 36139
17-03-17 17:48:11.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36142
17-03-17 17:48:11.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.178 -07 000000547 INF: FPGA: Recv ZSGSRD 36145
17-03-17 17:48:11.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.188 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.188 -07 000000551 INF: FPGA: Recv ZSGSRD 36142
17-03-17 17:48:11.198 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.198 -07 000000547 INF: FPGA: Recv ZSGSRD 36146
17-03-17 17:48:11.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.208 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.208 -07 000000547 INF: FPGA: Recv ZSGSRD 36153
17-03-17 17:48:11.218 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.218 -07 000000569 INF: FPGA: Recv ZSGSRD 36149
17-03-17 17:48:11.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:11.228 -07 000000547 INF: FPGA: Recv ZSGSRD 36140
17-03-17 17:48:11.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.238 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:11.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 32161
17-03-17 17:48:11.248 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.248 -07 000000438 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.8 V.
17-03-17 17:48:11.248 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36145 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36146 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36139 (-171.6 uncal um), Max = 36153 (-171.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:48:11.248 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36145, posNoise = 8, negNoise = 6
17-03-17 17:48:11.248 -07 000000438 INF: Z Motor: After move to -0.172515, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:11.248 -07 000000438 INF: Z Motor: Settle wait time = 1429 ms, measure time = 103 ms (allowed 150 ms), total time = 1532 ms
17-03-17 17:48:11.248 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:11.298 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 17:48:11.298 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:11.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:11.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:11.298 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:11.298 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:11.298 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:11.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:11.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:11.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:11.308 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:11.308 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:11.308 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:48:11.318 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:48:11.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:11.358 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:11.528 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:11.558 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:11.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:11.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:11.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:48:11.598 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:11.598 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:11.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:48:11.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:48:11.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:11.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:48:11.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:48:11.698 -07 000000547 INF: Autofocus start
17-03-17 17:48:11.698 -07 000000547 INF: MeasureProfile start
17-03-17 17:48:11.698 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:11.698 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:11.708 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:11.708 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:11.708 -07 000000547 INF: MeasureProfile done
17-03-17 17:48:11.708 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:48:11.708 -07 000000547 INF: Autofocus finished
17-03-17 17:48:11.908 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:11.908 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:11.908 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172526499875085. ----------
17-03-17 17:48:11.918 -07 000000610 INF: Cycle	5	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:11.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36201, sync = True, waitForSettling = True)
17-03-17 17:48:11.918 -07 000000610 INF: Z Motor: Moving to -0.165718 mm, started at -0.172526 mm, distance = 6.81 um
17-03-17 17:48:11.918 -07 000000610 INF: FPGA: Xmit ZDACW 36201\n [Z Motor]
17-03-17 17:48:11.918 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:48:11.928 -07 000000610 INF: FPGA: 'ZDACW 36201' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:11.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:11.928 -07 000000438 INF: FPGA: Recv ZDACR 36201
17-03-17 17:48:11.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:11.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.088 -07 000000438 INF: FPGA: Recv ZSGSRD 35086
17-03-17 17:48:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.098 -07 000000551 INF: FPGA: Recv ZSGSRD 35090
17-03-17 17:48:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.108 -07 000000462 INF: FPGA: Recv ZSGSRD 35086
17-03-17 17:48:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35083
17-03-17 17:48:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.128 -07 000000462 INF: FPGA: Recv ZSGSRD 35086
17-03-17 17:48:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35092
17-03-17 17:48:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35085
17-03-17 17:48:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35081
17-03-17 17:48:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.168 -07 000000547 INF: FPGA: Recv ZSGSRD 35090
17-03-17 17:48:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:12.178 -07 000000547 INF: FPGA: Recv ZSGSRD 35089
17-03-17 17:48:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:12.188 -07 000000438 INF: FPGA: Recv ZPIEZORD 30777
17-03-17 17:48:12.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:12.198 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.5 V.
17-03-17 17:48:12.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35087 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35086 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35081 (-164.8 uncal um), Max = 35092 (-164.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:48:12.198 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35087, posNoise = 5, negNoise = 6
17-03-17 17:48:12.198 -07 000000610 INF: Z Motor: After move to -0.165718, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:12.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:48:12.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:12.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:12.198 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:12.198 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:12.198 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:12.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:12.198 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:12.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:12.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:12.198 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:12.198 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:12.198 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:12.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:12.208 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:12.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:12.208 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:12.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:12.218 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:12.218 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:48:12.218 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:12.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36378 150\n [Camera]
17-03-17 17:48:12.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:12.808 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:12.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:12.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:12.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:12.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:48:12.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:12.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:12.928 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:12.938 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:12.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:48:12.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36378 775
17-03-17 17:48:13.148 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:48:13.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:48:13.188 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:48:13.188 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:13.198 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:13.198 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:48:13.308 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:48:13.308 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:48:13.308 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:13.308 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:13.318 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:48:13.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:13.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:13.338 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:13.338 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:13.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:13.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:13.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:13.338 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:13.338 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:13.338 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:48:13.528 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:13.528 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:13.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36378 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:48:13.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:48:13.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165729683429102. ------
17-03-17 17:48:13.538 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17205 mm
17-03-17 17:48:13.538 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:13.538 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:13.538 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37583, sync = True, waitForSettling = False)
17-03-17 17:48:13.538 -07 000000618 INF: Z Motor: Moving to -0.172044 mm, started at -0.165730 mm, distance = -6.31 um
17-03-17 17:48:13.538 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:13.538 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:48:13.538 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:48:13.548 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:13.548 -07 000000618 INF: FPGA: Xmit ZDACW 37583\n [Z Motor]
17-03-17 17:48:13.548 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:48:13.558 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:13.558 -07 000000618 INF: FPGA: 'ZDACW 37583' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:48:13.558 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:48:13.568 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:13.568 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:48:13.568 -07 000000569 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:13.568 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:13.568 -07 000000569 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:48:13.578 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:13.578 -07 000000448 INF: FPGA: Recv ZDACR 37583
17-03-17 17:48:13.588 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:13.588 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:48:13.588 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:13.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:48:13.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:48:13.728 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:13.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:48:13.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:48:13.728 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:13.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:13.728 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:48:13.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:48:13.738 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:48:13.768 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:13.768 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:48:13.958 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:48:13.958 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:48:13.978 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:13.988 -07 000000547 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:48:13.988 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:48:13.988 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:13.988 -07 000000569 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:48:13.988 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 17:48:14.008 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.985358,
17-03-17 17:48:14.938 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:14.938 -07 000000476 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:48:14.948 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:14.948 -07 000000569 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:14.958 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:14.958 -07 000000569 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:14.958 -07 000000569 INF: Y Motor: Moved to 74.8325 after 1417 ms (table move)
17-03-17 17:48:14.958 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172044 mm (DAC = 37583)
17-03-17 17:48:14.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:14.968 -07 000000618 INF: FPGA: Recv ZSGSRD 36074
17-03-17 17:48:14.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:48:14.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:14.968 -07 000000569 INF: FPGA: Recv ZSGSRD 36077
17-03-17 17:48:14.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:14.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:14.978 -07 000000569 INF: FPGA: Recv ZSGSRD 36079
17-03-17 17:48:14.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:14.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:14.988 -07 000000476 INF: FPGA: Recv ZSGSRD 36060
17-03-17 17:48:14.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:14.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:14.998 -07 000000476 INF: FPGA: Recv ZSGSRD 36065
17-03-17 17:48:15.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.008 -07 000000618 INF: FPGA: Recv ZSGSRD 36076
17-03-17 17:48:15.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.018 -07 000000476 INF: FPGA: Recv ZSGSRD 36073
17-03-17 17:48:15.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:15.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.028 -07 000000618 INF: FPGA: Recv ZSGSRD 36077
17-03-17 17:48:15.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36072
17-03-17 17:48:15.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.048 -07 000000476 INF: FPGA: Recv ZSGSRD 36068
17-03-17 17:48:15.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.058 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:15.058 -07 000000438 INF: FPGA: Recv ZPIEZORD 32074
17-03-17 17:48:15.068 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.068 -07 000000627 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.735 V. Piezo Error = -8.8 V.
17-03-17 17:48:15.068 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36072 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36074 (-171.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36060 (-171.1 uncal um), Max = 36079 (-171.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 17:48:15.068 -07 000000627 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36072, posNoise = 7, negNoise = 12
17-03-17 17:48:15.068 -07 000000627 INF: Z Motor: After move to -0.172044, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:15.068 -07 000000627 INF: Z Motor: Settle wait time = 1422 ms, measure time = 102 ms (allowed 150 ms), total time = 1524 ms
17-03-17 17:48:15.068 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:15.118 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 17:48:15.118 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:15.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:15.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:15.118 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:15.118 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:15.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:15.118 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:15.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:15.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:15.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:15.128 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:15.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:48:15.138 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:48:15.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:15.188 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:15.388 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:15.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:15.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:15.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:48:15.428 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:15.428 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:15.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:48:15.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 17:48:15.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:15.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:15.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 17:48:15.528 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:15.528 -07 000000627 INF: Autofocus start
17-03-17 17:48:15.528 -07 000000627 INF: MeasureProfile start
17-03-17 17:48:15.528 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:15.538 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:48:15.538 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:15.538 -07 000000627 INF: MeasureProfile done
17-03-17 17:48:15.538 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:48:15.538 -07 000000627 INF: Autofocus finished
17-03-17 17:48:15.738 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:15.738 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:15.738 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172057532388736. ----------
17-03-17 17:48:15.748 -07 000000610 INF: Cycle	5	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:15.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36098, sync = True, waitForSettling = True)
17-03-17 17:48:15.748 -07 000000610 INF: Z Motor: Moving to -0.165246 mm, started at -0.172058 mm, distance = 6.81 um
17-03-17 17:48:15.748 -07 000000610 INF: FPGA: Xmit ZDACW 36098\n [Z Motor]
17-03-17 17:48:15.748 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:48:15.758 -07 000000610 INF: FPGA: 'ZDACW 36098' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:15.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:15.758 -07 000000618 INF: FPGA: Recv ZDACR 36098
17-03-17 17:48:15.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:15.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35008
17-03-17 17:48:15.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:15.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:48:15.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.938 -07 000000627 INF: FPGA: Recv ZSGSRD 35012
17-03-17 17:48:15.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.948 -07 000000476 INF: FPGA: Recv ZSGSRD 35010
17-03-17 17:48:15.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.958 -07 000000438 INF: FPGA: Recv ZSGSRD 35011
17-03-17 17:48:15.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.968 -07 000000476 INF: FPGA: Recv ZSGSRD 35015
17-03-17 17:48:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.978 -07 000000627 INF: FPGA: Recv ZSGSRD 35021
17-03-17 17:48:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.988 -07 000000476 INF: FPGA: Recv ZSGSRD 35011
17-03-17 17:48:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:15.998 -07 000000476 INF: FPGA: Recv ZSGSRD 35013
17-03-17 17:48:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:16.008 -07 000000618 INF: FPGA: Recv ZSGSRD 35017
17-03-17 17:48:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:16.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:16.018 -07 000000551 INF: FPGA: Recv ZPIEZORD 30706
17-03-17 17:48:16.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:16.028 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.508 V. Piezo Error = -9.5 V.
17-03-17 17:48:16.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35014 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35012 (-164.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35008 (-164.4 uncal um), Max = 35021 (-164.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:48:16.028 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35014, posNoise = 7, negNoise = 6
17-03-17 17:48:16.028 -07 000000610 INF: Z Motor: After move to -0.165246, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:16.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:48:16.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:16.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:16.028 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:16.028 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:16.028 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:16.028 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:16.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:16.028 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:16.028 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:16.028 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:16.028 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:16.028 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:16.038 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:16.038 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:16.038 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:48:16.038 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:16.038 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:48:16.038 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:48:16.048 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:48:16.048 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:48:16.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36275 150\n [Camera]
17-03-17 17:48:16.248 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 17:48:16.528 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:16.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:16.638 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:16.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:16.638 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:16.638 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:16.638 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:48:16.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:16.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:16.648 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:16.648 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:16.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:48:16.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36275 775
17-03-17 17:48:16.978 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:17.018 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:48:17.018 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:48:17.018 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:17.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:48:17.018 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:48:17.018 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:17.018 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:17.018 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:17.018 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:17.028 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:48:17.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:17.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:17.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:17.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:17.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:17.288 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:17.288 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) start.
17-03-17 17:48:17.288 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:17.288 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:17.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1068994152, 0x0, 418435064) start.
17-03-17 17:48:17.358 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:17.358 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:17.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36275 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:48:17.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:48:17.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:17.668 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:17.668 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1068994152, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:48:17.668 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:48:17.668 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:17.668 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:17.668 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 17:48:17.668 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:48:17.668 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:17.678 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:48:17.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 17:48:17.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:48:17.758 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:48:17.758 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 17:48:17.758 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:48:17.758 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 17:48:17.768 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:17.768 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:48:18.268 -07 000000476 INF: FPGA: Recv EMIN
17-03-17 17:48:18.268 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:48:18.268 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:48:18.268 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 17:48:18.278 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:18.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:18.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165260715942753. ------
17-03-17 17:48:18.278 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:18.278 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13954 mm
17-03-17 17:48:18.278 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:18.288 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30483, sync = True, waitForSettling = False)
17-03-17 17:48:18.288 -07 000000627 INF: Z Motor: Moving to -0.139542 mm, started at -0.165261 mm, distance = 25.72 um
17-03-17 17:48:18.288 -07 000000627 INF: FPGA: Xmit ZDACW 30483\n [Z Motor]
17-03-17 17:48:18.288 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:18.288 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:48:18.288 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:48:18.288 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 17:48:18.288 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:48:18.298 -07 000000627 INF: FPGA: 'ZDACW 30483' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:18.298 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:18.308 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:18.308 -07 000000541 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:48:18.318 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:48:18.318 -07 000000459 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:18.318 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:18.318 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 17:48:18.318 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:48:18.318 -07 000000476 INF: FPGA: Recv ZDACR 30483
17-03-17 17:48:18.328 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:18.328 -07 000000627 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:48:18.328 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:48:18.498 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:18.498 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 17:48:19.368 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.981281,
17-03-17 17:48:19.958 -07 000000541 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 17:48:19.958 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1621 ms to get response, and 1639 ms overall
17-03-17 17:48:19.958 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 17:48:19.958 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 17:48:19.958 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1639 ms, distance = 14.920 mm, average velocity = 9.103 mm/sec
17-03-17 17:48:21.528 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:21.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:22.808 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:22.808 -07 000000618 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:48:22.818 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:22.818 -07 000000459 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:22.838 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:22.838 -07 000000459 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 17:48:22.838 -07 000000459 INF: Y Motor: Moved to 59.9116 after 4553 ms
17-03-17 17:48:22.838 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139542 mm (DAC = 30483)
17-03-17 17:48:22.838 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.848 -07 000000627 INF: FPGA: Recv ZSGSRD 31015
17-03-17 17:48:22.848 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:48:22.848 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.848 -07 000000627 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:48:22.858 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:22.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.858 -07 000000627 INF: FPGA: Recv ZSGSRD 31017
17-03-17 17:48:22.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.868 -07 000000459 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:48:22.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.878 -07 000000627 INF: FPGA: Recv ZSGSRD 31017
17-03-17 17:48:22.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.888 -07 000000627 INF: FPGA: Recv ZSGSRD 31015
17-03-17 17:48:22.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.898 -07 000000382 INF: FPGA: Recv ZSGSRD 31012
17-03-17 17:48:22.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.908 -07 000000382 INF: FPGA: Recv ZSGSRD 31011
17-03-17 17:48:22.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.918 -07 000000438 INF: FPGA: Recv ZSGSRD 31010
17-03-17 17:48:22.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:22.928 -07 000000438 INF: FPGA: Recv ZSGSRD 31016
17-03-17 17:48:22.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.938 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:22.938 -07 000000438 INF: FPGA: Recv ZPIEZORD 26490
17-03-17 17:48:22.948 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:22.948 -07 000000608 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -9.9 V.
17-03-17 17:48:22.948 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31014 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31014 (-138.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 31010 (-138.7 uncal um), Max = 31017 (-138.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:48:22.948 -07 000000608 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31014, posNoise = 3, negNoise = 4
17-03-17 17:48:22.948 -07 000000608 INF: Z Motor: After move to -0.139542, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:22.948 -07 000000608 INF: Z Motor: Settle wait time = 4557 ms, measure time = 104 ms (allowed 150 ms), total time = 4661 ms
17-03-17 17:48:22.948 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:22.998 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4711 ms
17-03-17 17:48:22.998 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:22.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:22.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:22.998 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:22.998 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:22.998 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:22.998 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:22.998 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:22.998 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:48:23.028 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 17:48:23.028 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:23.028 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:48:23.028 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:23.038 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:48:23.038 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 17:48:23.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:23.088 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:23.288 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:23.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:23.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:23.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) start.
17-03-17 17:48:23.328 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:23.328 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:23.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:48:23.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:48:23.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:23.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:48:23.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:48:23.428 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:23.428 -07 000000475 INF: Image SNR check: start
17-03-17 17:48:23.428 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:23.438 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:23.438 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:23.448 -07 000000475 INF: Image SNR check: pass  [peak (Max-Min)=64.58]
17-03-17 17:48:23.448 -07 000000475 INF: Autofocus start
17-03-17 17:48:23.448 -07 000000475 INF: MeasureProfile start
17-03-17 17:48:23.458 -07 000000475 INF: MeasureProfile done
17-03-17 17:48:23.458 -07 000000475 INF: X=64  Z correction [um]=0.2839165
17-03-17 17:48:23.458 -07 000000475 INF: Autofocus finished
17-03-17 17:48:23.638 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:23.638 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:23.638 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.139563867375709. ----------
17-03-17 17:48:23.638 -07 000000610 INF: Cycle	5	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:23.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29058, sync = True, waitForSettling = True)
17-03-17 17:48:23.648 -07 000000610 INF: Z Motor: Moving to -0.133019 mm, started at -0.139564 mm, distance = 6.54 um
17-03-17 17:48:23.648 -07 000000610 INF: FPGA: Xmit ZDACW 29058\n [Z Motor]
17-03-17 17:48:23.648 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:48:23.658 -07 000000610 INF: FPGA: 'ZDACW 29058' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:23.658 -07 000000475 INF: FPGA: Recv ZDACR 29058
17-03-17 17:48:23.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:23.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.818 -07 000000475 INF: FPGA: Recv ZSGSRD 29997
17-03-17 17:48:23.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:23.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.828 -07 000000475 INF: FPGA: Recv ZSGSRD 29998
17-03-17 17:48:23.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.838 -07 000000475 INF: FPGA: Recv ZSGSRD 29995
17-03-17 17:48:23.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.848 -07 000000382 INF: FPGA: Recv ZSGSRD 29989
17-03-17 17:48:23.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.858 -07 000000475 INF: FPGA: Recv ZSGSRD 30002
17-03-17 17:48:23.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.868 -07 000000627 INF: FPGA: Recv ZSGSRD 29997
17-03-17 17:48:23.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.878 -07 000000382 INF: FPGA: Recv ZSGSRD 29992
17-03-17 17:48:23.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29998
17-03-17 17:48:23.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.898 -07 000000627 INF: FPGA: Recv ZSGSRD 29994
17-03-17 17:48:23.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:23.908 -07 000000382 INF: FPGA: Recv ZSGSRD 29995
17-03-17 17:48:23.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:23.918 -07 000000608 INF: FPGA: Recv ZPIEZORD 25417
17-03-17 17:48:23.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:23.928 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -10.0 V.
17-03-17 17:48:23.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29996 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29996 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29989 (-132.2 uncal um), Max = 30002 (-132.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:48:23.928 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29996, posNoise = 6, negNoise = 7
17-03-17 17:48:23.928 -07 000000610 INF: Z Motor: After move to -0.133019, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:23.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:48:23.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:23.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:23.928 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:23.928 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:23.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:23.928 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:23.928 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:23.928 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:23.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:23.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:23.928 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:48:23.928 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:48:23.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:23.928 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:23.938 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:23.938 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:48:23.948 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 17:48:23.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:23.948 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:23.948 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:23.958 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:48:23.958 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 17:48:23.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29235 150\n [Camera]
17-03-17 17:48:24.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:24.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 17:48:24.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 17:48:24.558 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:24.558 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:24.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:24.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 17:48:24.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 17:48:24.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:24.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:24.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:48:24.728 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.985358,
17-03-17 17:48:24.748 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29235 775
17-03-17 17:48:24.898 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:24.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:48:24.938 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:48:24.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:24.938 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:48:24.938 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:48:24.938 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:24.938 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:24.938 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:24.938 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:48:24.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:48:25.088 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:25.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:25.088 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:25.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:25.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:25.198 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:25.198 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:25.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:48:25.198 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:25.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:48:25.278 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:25.278 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:25.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29235 150' command took 2 ms to send, 1304 ms to get response, and 1315 ms overall
17-03-17 17:48:25.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:25.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.133024019415397. ------
17-03-17 17:48:25.288 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13952 mm
17-03-17 17:48:25.288 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:25.288 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:25.288 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:25.288 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:48:25.288 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 17:48:25.288 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30478, sync = True, waitForSettling = False)
17-03-17 17:48:25.298 -07 000000462 INF: Z Motor: Moving to -0.139519 mm, started at -0.133024 mm, distance = -6.50 um
17-03-17 17:48:25.298 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:25.298 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:25.308 -07 000000462 INF: FPGA: Xmit ZDACW 30478\n [Z Motor]
17-03-17 17:48:25.308 -07 000000448 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:48:25.308 -07 000000382 INF: FPGA: 'YRDPOS' command took 8 ms to send, 1 ms to get response, and 17 ms overall
17-03-17 17:48:25.308 -07 000000382 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:25.308 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:25.308 -07 000000382 INF: Y Motor: Moving 1330 steps2
17-03-17 17:48:25.308 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:48:25.318 -07 000000462 INF: FPGA: 'ZDACW 30478' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:48:25.318 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:25.328 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:25.338 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:25.338 -07 000000475 INF: FPGA: Recv ZDACR 30478
17-03-17 17:48:25.348 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:25.348 -07 000000462 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:48:25.518 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:25.518 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 17:48:25.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:48:25.578 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:48:25.578 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:25.578 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:48:25.578 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:25.578 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:25.578 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:25.578 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:25.578 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 17:48:25.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:48:25.698 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:48:25.698 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:48:25.728 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:25.728 -07 000000569 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:48:25.738 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:25.738 -07 000000382 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:25.738 -07 000000382 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:48:25.738 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.831 mm, average velocity = 2.098 mm/sec
17-03-17 17:48:26.528 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:26.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:26.688 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:26.688 -07 000000475 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:48:26.698 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.698 -07 000000382 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:26.708 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.008720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:26.718 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:48:26.718 -07 000000382 INF: Y Motor: Moved to 60.7339 after 1425 ms (table move)
17-03-17 17:48:26.718 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139519 mm (DAC = 30478)
17-03-17 17:48:26.718 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.718 -07 000000623 INF: FPGA: Recv ZSGSRD 31015
17-03-17 17:48:26.728 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:26.728 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.728 -07 000000382 INF: FPGA: Recv ZSGSRD 31002
17-03-17 17:48:26.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.738 -07 000000623 INF: FPGA: Recv ZSGSRD 31002
17-03-17 17:48:26.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.748 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.748 -07 000000627 INF: FPGA: Recv ZSGSRD 31007
17-03-17 17:48:26.758 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.758 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.758 -07 000000569 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:48:26.768 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.768 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.768 -07 000000618 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:48:26.778 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.778 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.778 -07 000000627 INF: FPGA: Recv ZSGSRD 31001
17-03-17 17:48:26.788 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.788 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.788 -07 000000569 INF: FPGA: Recv ZSGSRD 31005
17-03-17 17:48:26.798 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.798 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.798 -07 000000618 INF: FPGA: Recv ZSGSRD 31004
17-03-17 17:48:26.808 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.808 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:26.808 -07 000000569 INF: FPGA: Recv ZSGSRD 31008
17-03-17 17:48:26.818 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.818 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:26.818 -07 000000618 INF: FPGA: Recv ZPIEZORD 26813
17-03-17 17:48:26.828 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:26.828 -07 000000608 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -9.2 V.
17-03-17 17:48:26.828 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31006 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31006 (-138.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31001 (-138.7 uncal um), Max = 31015 (-138.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:48:26.828 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31006, posNoise = 9, negNoise = 5
17-03-17 17:48:26.828 -07 000000608 INF: Z Motor: After move to -0.139519, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:26.828 -07 000000608 INF: Z Motor: Settle wait time = 1414 ms, measure time = 108 ms (allowed 150 ms), total time = 1522 ms
17-03-17 17:48:26.828 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:26.878 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 17:48:26.878 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:26.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:26.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:26.878 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:26.878 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:26.878 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:26.878 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:26.878 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:26.878 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:26.888 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:26.888 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:26.898 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:48:26.898 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:48:26.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:26.948 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:27.148 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:27.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:27.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:27.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1087541352, 0x0, 559484976) start.
17-03-17 17:48:27.188 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:27.188 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:27.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:48:27.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1087541352, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:48:27.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:27.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:27.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 17:48:27.288 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:27.288 -07 000000569 INF: Autofocus start
17-03-17 17:48:27.288 -07 000000569 INF: MeasureProfile start
17-03-17 17:48:27.288 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:27.298 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:27.298 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:27.298 -07 000000569 INF: MeasureProfile done
17-03-17 17:48:27.298 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:48:27.298 -07 000000569 INF: Autofocus finished
17-03-17 17:48:27.498 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:27.498 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:27.498 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73388671875, Z-position -0.139512473678575. ----------
17-03-17 17:48:27.498 -07 000000610 INF: Cycle	5	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:27.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28973, sync = True, waitForSettling = True)
17-03-17 17:48:27.508 -07 000000610 INF: Z Motor: Moving to -0.132630 mm, started at -0.139512 mm, distance = 6.88 um
17-03-17 17:48:27.508 -07 000000610 INF: FPGA: Xmit ZDACW 28973\n [Z Motor]
17-03-17 17:48:27.508 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:48:27.518 -07 000000610 INF: FPGA: 'ZDACW 28973' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:27.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:27.518 -07 000000551 INF: FPGA: Recv ZDACR 28973
17-03-17 17:48:27.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:27.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.678 -07 000000480 INF: FPGA: Recv ZSGSRD 29934
17-03-17 17:48:27.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:27.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.688 -07 000000480 INF: FPGA: Recv ZSGSRD 29938
17-03-17 17:48:27.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.698 -07 000000608 INF: FPGA: Recv ZSGSRD 29939
17-03-17 17:48:27.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.708 -07 000000462 INF: FPGA: Recv ZSGSRD 29937
17-03-17 17:48:27.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.718 -07 000000476 INF: FPGA: Recv ZSGSRD 29935
17-03-17 17:48:27.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.728 -07 000000551 INF: FPGA: Recv ZSGSRD 29936
17-03-17 17:48:27.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.738 -07 000000476 INF: FPGA: Recv ZSGSRD 29931
17-03-17 17:48:27.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29939
17-03-17 17:48:27.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.758 -07 000000551 INF: FPGA: Recv ZSGSRD 29935
17-03-17 17:48:27.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:27.768 -07 000000462 INF: FPGA: Recv ZSGSRD 29929
17-03-17 17:48:27.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:27.778 -07 000000608 INF: FPGA: Recv ZPIEZORD 25374
17-03-17 17:48:27.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:27.788 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -10.0 V.
17-03-17 17:48:27.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29935 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29936 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29929 (-131.8 uncal um), Max = 29939 (-131.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:48:27.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29935, posNoise = 4, negNoise = 6
17-03-17 17:48:27.788 -07 000000610 INF: Z Motor: After move to -0.132630, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:27.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:48:27.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:27.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:27.788 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:27.788 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:27.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:27.788 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:27.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:27.788 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:27.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:27.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:27.788 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:27.788 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:27.798 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:27.798 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:27.798 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:48:27.798 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:27.808 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 17:48:27.808 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 17:48:27.808 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:48:27.808 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:48:27.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29150 150\n [Camera]
17-03-17 17:48:28.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:28.398 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:28.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:28.408 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:28.408 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:28.408 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:28.408 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:28.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:28.408 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:28.408 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:28.408 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 17:48:28.598 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29150 775
17-03-17 17:48:28.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:28.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 17:48:28.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:48:28.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:28.808 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:28.808 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:48:28.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 17:48:28.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:48:28.808 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:28.808 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:28.818 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:48:28.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:28.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:28.938 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:28.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:28.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:28.938 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:28.938 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:28.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:48:28.938 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:28.938 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1119092496, 0x0, 391868352) start.
17-03-17 17:48:29.128 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:29.128 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:29.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29150 150' command took 3 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 17:48:29.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:29.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73388671875, Z-Position -0.132632142474749. ------
17-03-17 17:48:29.238 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13933 mm
17-03-17 17:48:29.238 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:29.238 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:29.248 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:48:29.248 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7339 mm, delta = 0.8387 mm
17-03-17 17:48:29.248 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:29.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 17:48:29.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:48:29.338 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:29.348 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:29.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1119092496, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 17:48:29.348 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:48:29.348 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:29.348 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:29.348 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 17:48:29.348 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:48:29.388 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30438, sync = True, waitForSettling = False)
17-03-17 17:48:29.388 -07 000000480 INF: Z Motor: Moving to -0.139336 mm, started at -0.132632 mm, distance = -6.70 um
17-03-17 17:48:29.388 -07 000000480 INF: FPGA: Xmit ZDACW 30438\n [Z Motor]
17-03-17 17:48:29.398 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:29.398 -07 000000551 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:48:29.398 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:48:29.398 -07 000000480 INF: FPGA: 'ZDACW 30438' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:48:29.398 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:29.398 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 150 ms to get response, and 151 ms overall
17-03-17 17:48:29.398 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 140 ms to get response, and 148 ms overall
17-03-17 17:48:29.398 -07 000000608 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:29.398 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:29.398 -07 000000608 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:48:29.398 -07 000000551 INF: FPGA: Recv ZDACR 30438
17-03-17 17:48:29.408 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:29.408 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:29.408 -07 000000480 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 17:48:29.418 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:29.618 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:29.618 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:48:29.778 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:48:29.778 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 17:48:29.808 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:29.818 -07 000000438 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:48:29.818 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:48:29.818 -07 000000608 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:29.818 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:48:29.818 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.173 mm/sec
17-03-17 17:48:30.088 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.962185,
17-03-17 17:48:30.768 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:30.768 -07 000000480 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:48:30.778 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:30.778 -07 000000608 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:30.798 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:30.798 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:30.798 -07 000000608 INF: Y Motor: Moved to 61.5645 after 1548 ms (table move)
17-03-17 17:48:30.798 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139336 mm (DAC = 30438)
17-03-17 17:48:30.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.798 -07 000000476 INF: FPGA: Recv ZSGSRD 30983
17-03-17 17:48:30.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:30.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.808 -07 000000551 INF: FPGA: Recv ZSGSRD 30981
17-03-17 17:48:30.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.818 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.818 -07 000000478 INF: FPGA: Recv ZSGSRD 30972
17-03-17 17:48:30.828 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.828 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.828 -07 000000480 INF: FPGA: Recv ZSGSRD 30972
17-03-17 17:48:30.838 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.838 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30984
17-03-17 17:48:30.848 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.848 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.848 -07 000000551 INF: FPGA: Recv ZSGSRD 30986
17-03-17 17:48:30.858 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.858 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.858 -07 000000478 INF: FPGA: Recv ZSGSRD 30985
17-03-17 17:48:30.868 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.868 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.868 -07 000000551 INF: FPGA: Recv ZSGSRD 30980
17-03-17 17:48:30.878 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.878 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.878 -07 000000476 INF: FPGA: Recv ZSGSRD 30979
17-03-17 17:48:30.888 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.888 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:30.888 -07 000000551 INF: FPGA: Recv ZSGSRD 30978
17-03-17 17:48:30.898 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.898 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:30.898 -07 000000438 INF: FPGA: Recv ZPIEZORD 26788
17-03-17 17:48:30.908 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:30.908 -07 000000462 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.645 V. Piezo Error = -9.2 V.
17-03-17 17:48:30.908 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30980 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30980 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30972 (-138.5 uncal um), Max = 30986 (-138.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:48:30.908 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30980, posNoise = 6, negNoise = 8
17-03-17 17:48:30.908 -07 000000462 INF: Z Motor: After move to -0.139336, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:30.908 -07 000000462 INF: Z Motor: Settle wait time = 1406 ms, measure time = 108 ms (allowed 150 ms), total time = 1514 ms
17-03-17 17:48:30.908 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:30.958 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms
17-03-17 17:48:30.958 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:30.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:30.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:30.958 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:30.958 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:30.958 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:30.958 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:30.968 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:30.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:30.968 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:30.968 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:30.978 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:48:30.978 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:48:30.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:31.028 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:31.228 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:31.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:31.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:31.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:48:31.268 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:31.268 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:31.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 288 ms overall
17-03-17 17:48:31.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:48:31.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:31.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:31.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:48:31.368 -07 000000459 INF: Autofocus start
17-03-17 17:48:31.368 -07 000000459 INF: MeasureProfile start
17-03-17 17:48:31.368 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:31.368 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:31.378 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:31.378 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:31.378 -07 000000459 INF: MeasureProfile done
17-03-17 17:48:31.378 -07 000000459 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:48:31.378 -07 000000459 INF: Autofocus finished
17-03-17 17:48:31.528 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:31.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:31.578 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:31.578 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 17:48:31.588 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139345444162889. ----------
17-03-17 17:48:31.588 -07 000000610 INF: Cycle	5	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:31.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28978, sync = True, waitForSettling = True)
17-03-17 17:48:31.588 -07 000000610 INF: Z Motor: Moving to -0.132653 mm, started at -0.139345 mm, distance = 6.69 um
17-03-17 17:48:31.588 -07 000000610 INF: FPGA: Xmit ZDACW 28978\n [Z Motor]
17-03-17 17:48:31.588 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:48:31.598 -07 000000610 INF: FPGA: 'ZDACW 28978' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:31.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:31.598 -07 000000480 INF: FPGA: Recv ZDACR 28978
17-03-17 17:48:31.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:31.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29939
17-03-17 17:48:31.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:31.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.768 -07 000000438 INF: FPGA: Recv ZSGSRD 29941
17-03-17 17:48:31.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:31.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29947
17-03-17 17:48:31.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29944
17-03-17 17:48:31.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.798 -07 000000438 INF: FPGA: Recv ZSGSRD 29937
17-03-17 17:48:31.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.808 -07 000000438 INF: FPGA: Recv ZSGSRD 29941
17-03-17 17:48:31.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.818 -07 000000438 INF: FPGA: Recv ZSGSRD 29936
17-03-17 17:48:31.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29940
17-03-17 17:48:31.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.838 -07 000000438 INF: FPGA: Recv ZSGSRD 29942
17-03-17 17:48:31.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:31.848 -07 000000608 INF: FPGA: Recv ZSGSRD 29938
17-03-17 17:48:31.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:31.858 -07 000000459 INF: FPGA: Recv ZPIEZORD 25432
17-03-17 17:48:31.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:31.868 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -9.9 V.
17-03-17 17:48:31.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29940 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29940 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29936 (-131.9 uncal um), Max = 29947 (-131.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:48:31.868 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29940, posNoise = 7, negNoise = 4
17-03-17 17:48:31.868 -07 000000610 INF: Z Motor: After move to -0.132653, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:31.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:48:31.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:31.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:31.868 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:31.868 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:31.868 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:31.868 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:31.868 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:31.868 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:31.868 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:31.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:31.868 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:31.868 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:31.868 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:31.878 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:31.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:31.878 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:31.878 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:48:31.878 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:48:31.878 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:48:31.878 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:31.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29155 150\n [Camera]
17-03-17 17:48:32.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:32.478 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:32.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:32.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:32.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:32.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:48:32.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:32.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:32.478 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:32.478 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:32.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:48:32.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29155 775
17-03-17 17:48:32.818 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:32.858 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:48:32.858 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:48:32.858 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:32.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:48:32.858 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:48:32.858 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:32.858 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:32.858 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:32.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:32.868 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:48:33.008 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:33.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:33.008 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:33.008 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:33.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) start.
17-03-17 17:48:33.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:33.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:33.008 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:33.008 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:33.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) start.
17-03-17 17:48:33.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:33.198 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:33.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29155 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:48:33.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:33.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132664263535458. ------
17-03-17 17:48:33.208 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:33.208 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13905 mm
17-03-17 17:48:33.208 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:33.208 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:33.208 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:48:33.208 -07 000000459 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:48:33.218 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:33.218 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:33.228 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:33.388 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1475218192, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:48:33.388 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:48:33.388 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:33.388 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:33.388 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1439795928, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:48:33.388 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:33.388 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:33.398 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:33.398 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:48:33.398 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:48:33.408 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30375, sync = True, waitForSettling = False)
17-03-17 17:48:33.408 -07 000000438 INF: Z Motor: Moving to -0.139048 mm, started at -0.132664 mm, distance = -6.38 um
17-03-17 17:48:33.408 -07 000000438 INF: FPGA: Xmit ZDACW 30375\n [Z Motor]
17-03-17 17:48:33.408 -07 000000480 INF: FPGA: Recv YRDPOS 126085
17-03-17 17:48:33.408 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 185 ms to get response, and 197 ms overall
17-03-17 17:48:33.408 -07 000000459 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:33.408 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:48:33.408 -07 000000459 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:33.408 -07 000000459 INF: Y Motor: Moving 1340 steps-17
17-03-17 17:48:33.418 -07 000000438 INF: FPGA: 'ZDACW 30375' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:33.418 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:33.418 -07 000000480 INF: FPGA: Recv ZDACR 30375
17-03-17 17:48:33.428 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:33.428 -07 000000438 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 17:48:33.428 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:33.428 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:33.428 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 17:48:33.798 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:48:33.798 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 17:48:33.838 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:33.838 -07 000000608 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:48:33.848 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:33.848 -07 000000459 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:33.848 -07 000000459 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:48:33.848 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.838 mm, average velocity = 2.149 mm/sec
17-03-17 17:48:34.798 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:34.798 -07 000000480 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:48:34.808 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.808 -07 000000459 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:34.818 -07 000000459 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:34.818 -07 000000459 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:34.818 -07 000000459 INF: Y Motor: Moved to 62.3960 after 1610 ms (table move)
17-03-17 17:48:34.828 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139048 mm (DAC = 30375)
17-03-17 17:48:34.828 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.828 -07 000000438 INF: FPGA: Recv ZSGSRD 30930
17-03-17 17:48:34.838 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:34.838 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.838 -07 000000480 INF: FPGA: Recv ZSGSRD 30930
17-03-17 17:48:34.848 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.848 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.848 -07 000000608 INF: FPGA: Recv ZSGSRD 30941
17-03-17 17:48:34.858 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.858 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.858 -07 000000459 INF: FPGA: Recv ZSGSRD 30943
17-03-17 17:48:34.868 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.868 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.868 -07 000000608 INF: FPGA: Recv ZSGSRD 30934
17-03-17 17:48:34.878 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.878 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.878 -07 000000459 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:48:34.888 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.888 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.888 -07 000000459 INF: FPGA: Recv ZSGSRD 30931
17-03-17 17:48:34.898 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.898 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.898 -07 000000480 INF: FPGA: Recv ZSGSRD 30933
17-03-17 17:48:34.908 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.908 -07 000000608 INF: FPGA: Recv ZSGSRD 30929
17-03-17 17:48:34.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:34.918 -07 000000438 INF: FPGA: Recv ZSGSRD 30935
17-03-17 17:48:34.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.928 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:34.928 -07 000000438 INF: FPGA: Recv ZPIEZORD 26755
17-03-17 17:48:34.938 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:34.938 -07 000000448 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.635 V. Piezo Error = -9.2 V.
17-03-17 17:48:34.938 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30934 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30929 (-138.2 uncal um), Max = 30943 (-138.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:48:34.938 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30934, posNoise = 9, negNoise = 5
17-03-17 17:48:34.938 -07 000000448 INF: Z Motor: After move to -0.139048, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:34.938 -07 000000448 INF: Z Motor: Settle wait time = 1417 ms, measure time = 109 ms (allowed 150 ms), total time = 1526 ms
17-03-17 17:48:34.938 -07 000000448 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:34.988 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1775 ms
17-03-17 17:48:34.988 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:34.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:34.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:34.998 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:34.998 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:34.998 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:34.998 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:34.998 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:34.998 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:34.998 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:34.998 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:35.008 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:48:35.008 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:48:35.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:35.058 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 17:48:35.258 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 17:48:35.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 17:48:35.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:35.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) start.
17-03-17 17:48:35.298 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:35.298 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:35.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:48:35.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:48:35.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:35.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:35.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:48:35.398 -07 000000627 INF: Autofocus start
17-03-17 17:48:35.398 -07 000000627 INF: MeasureProfile start
17-03-17 17:48:35.398 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:35.398 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:35.408 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:35.408 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:35.408 -07 000000627 INF: MeasureProfile done
17-03-17 17:48:35.408 -07 000000627 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:48:35.408 -07 000000627 INF: Autofocus finished
17-03-17 17:48:35.448 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.98264,
17-03-17 17:48:35.608 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:35.608 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:35.608 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.139049930404368. ----------
17-03-17 17:48:35.608 -07 000000610 INF: Cycle	5	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:35.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28869, sync = True, waitForSettling = True)
17-03-17 17:48:35.618 -07 000000610 INF: Z Motor: Moving to -0.132154 mm, started at -0.139050 mm, distance = 6.90 um
17-03-17 17:48:35.618 -07 000000610 INF: FPGA: Xmit ZDACW 28869\n [Z Motor]
17-03-17 17:48:35.618 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:48:35.628 -07 000000610 INF: FPGA: 'ZDACW 28869' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:35.628 -07 000000480 INF: FPGA: Recv ZDACR 28869
17-03-17 17:48:35.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:35.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.788 -07 000000541 INF: FPGA: Recv ZSGSRD 29862
17-03-17 17:48:35.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:35.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.798 -07 000000438 INF: FPGA: Recv ZSGSRD 29864
17-03-17 17:48:35.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:35.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.808 -07 000000627 INF: FPGA: Recv ZSGSRD 29859
17-03-17 17:48:35.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29861
17-03-17 17:48:35.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.828 -07 000000608 INF: FPGA: Recv ZSGSRD 29857
17-03-17 17:48:35.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:35.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29853
17-03-17 17:48:35.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.848 -07 000000608 INF: FPGA: Recv ZSGSRD 29865
17-03-17 17:48:35.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.858 -07 000000480 INF: FPGA: Recv ZSGSRD 29861
17-03-17 17:48:35.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.868 -07 000000459 INF: FPGA: Recv ZSGSRD 29863
17-03-17 17:48:35.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:35.878 -07 000000438 INF: FPGA: Recv ZSGSRD 29856
17-03-17 17:48:35.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:35.888 -07 000000480 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 17:48:35.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:35.898 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.405 V. Piezo Error = -9.9 V.
17-03-17 17:48:35.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29860 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29861 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29853 (-131.3 uncal um), Max = 29865 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:48:35.898 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29860, posNoise = 5, negNoise = 7
17-03-17 17:48:35.898 -07 000000610 INF: Z Motor: After move to -0.132154, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:35.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:48:35.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:35.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:35.898 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:35.898 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:35.898 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:35.898 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:35.898 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:35.898 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:35.898 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:35.898 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:35.898 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:35.898 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:35.898 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:35.898 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:35.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:48:35.908 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:35.908 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:35.918 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:35.918 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:48:35.918 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:35.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29046 150\n [Camera]
17-03-17 17:48:36.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:36.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:36.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:36.508 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:36.508 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:36.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:48:36.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:36.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:36.508 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:36.508 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:36.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:48:36.528 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:36.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:36.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29046 775
17-03-17 17:48:36.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:36.888 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:48:36.888 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:48:36.888 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:36.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:48:36.888 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:48:36.888 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:36.888 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:36.888 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:48:36.888 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:36.898 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:48:37.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:37.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:37.038 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:37.038 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:37.038 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:48:37.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:37.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:37.038 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:37.038 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:37.038 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:48:37.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:37.228 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:37.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29046 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:48:37.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:37.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132150326564117. ------
17-03-17 17:48:37.228 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:37.228 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13886 mm
17-03-17 17:48:37.238 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:37.238 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:48:37.238 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:48:37.248 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:37.428 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 17:48:37.428 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:48:37.428 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:37.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:48:37.428 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:48:37.428 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:37.438 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:37.438 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:48:37.438 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:48:37.438 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:48:37.568 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30334, sync = True, waitForSettling = False)
17-03-17 17:48:37.568 -07 000000608 INF: Z Motor: Moving to -0.138860 mm, started at -0.132150 mm, distance = -6.71 um
17-03-17 17:48:37.568 -07 000000608 INF: FPGA: Xmit ZDACW 30334\n [Z Motor]
17-03-17 17:48:37.578 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:37.578 -07 000000448 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:48:37.578 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 320 ms to get response, and 337 ms overall
17-03-17 17:48:37.578 -07 000000541 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:37.578 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 330 ms to get response, and 340 ms overall
17-03-17 17:48:37.578 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:37.578 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:48:37.578 -07 000000608 INF: FPGA: 'ZDACW 30334' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:48:37.578 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:37.578 -07 000000541 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:48:37.588 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:37.598 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:37.598 -07 000000448 INF: FPGA: Recv ZDACR 30334
17-03-17 17:48:37.608 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:48:37.608 -07 000000608 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 17:48:37.778 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:37.778 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:48:37.958 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:48:37.958 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 17:48:37.988 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:37.998 -07 000000608 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:48:37.998 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 17:48:37.998 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:37.998 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:48:37.998 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.179 mm/sec
17-03-17 17:48:38.948 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:38.948 -07 000000475 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:48:38.958 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:38.958 -07 000000541 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:38.968 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.007511, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:38.968 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:38.968 -07 000000541 INF: Y Motor: Moved to 63.2251 after 1736 ms (table move)
17-03-17 17:48:38.978 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138860 mm (DAC = 30334)
17-03-17 17:48:38.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:38.978 -07 000000541 INF: FPGA: Recv ZSGSRD 30913
17-03-17 17:48:38.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:38.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:38.988 -07 000000608 INF: FPGA: Recv ZSGSRD 30895
17-03-17 17:48:38.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:38.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:38.998 -07 000000541 INF: FPGA: Recv ZSGSRD 30898
17-03-17 17:48:39.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.008 -07 000000608 INF: FPGA: Recv ZSGSRD 30907
17-03-17 17:48:39.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.018 -07 000000448 INF: FPGA: Recv ZSGSRD 30912
17-03-17 17:48:39.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.028 -07 000000475 INF: FPGA: Recv ZSGSRD 30914
17-03-17 17:48:39.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.038 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.038 -07 000000448 INF: FPGA: Recv ZSGSRD 30921
17-03-17 17:48:39.048 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.048 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.048 -07 000000448 INF: FPGA: Recv ZSGSRD 30915
17-03-17 17:48:39.058 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:39.058 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.058 -07 000000608 INF: FPGA: Recv ZSGSRD 30913
17-03-17 17:48:39.068 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.068 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30896
17-03-17 17:48:39.078 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.078 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:39.078 -07 000000541 INF: FPGA: Recv ZPIEZORD 26740
17-03-17 17:48:39.088 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.088 -07 000000459 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.2 V.
17-03-17 17:48:39.088 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30908 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30912 (-138.1 uncal um), StdDev = 9 (0.1 uncal um), Range = 26 (0.2 uncal um), Min = 30895 (-138.0 uncal um), Max = 30921 (-138.2 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 17:48:39.088 -07 000000459 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30908, posNoise = 13, negNoise = 13
17-03-17 17:48:39.088 -07 000000459 INF: Z Motor: After move to -0.138860, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:39.088 -07 000000459 INF: Z Motor: Settle wait time = 1403 ms, measure time = 108 ms (allowed 150 ms), total time = 1511 ms
17-03-17 17:48:39.088 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:39.138 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1900 ms
17-03-17 17:48:39.138 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:39.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:39.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:39.138 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:39.138 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:39.138 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:39.138 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:39.138 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:39.138 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:39.148 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:39.148 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:39.148 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:48:39.148 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:48:39.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:39.198 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:39.398 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:39.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:39.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:39.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:48:39.438 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:39.438 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:39.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:48:39.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 17:48:39.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:39.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:39.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:48:39.538 -07 000000608 INF: Autofocus start
17-03-17 17:48:39.538 -07 000000608 INF: MeasureProfile start
17-03-17 17:48:39.538 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:39.538 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:39.548 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:39.548 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:39.548 -07 000000608 INF: MeasureProfile done
17-03-17 17:48:39.548 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:48:39.548 -07 000000608 INF: Autofocus finished
17-03-17 17:48:39.748 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:39.748 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:48:39.748 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22509765625, Z-position -0.138882900888683. ----------
17-03-17 17:48:39.748 -07 000000610 INF: Cycle	5	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:39.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28858, sync = True, waitForSettling = True)
17-03-17 17:48:39.758 -07 000000610 INF: Z Motor: Moving to -0.132103 mm, started at -0.138883 mm, distance = 6.78 um
17-03-17 17:48:39.758 -07 000000610 INF: FPGA: Xmit ZDACW 28858\n [Z Motor]
17-03-17 17:48:39.758 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:48:39.768 -07 000000610 INF: FPGA: 'ZDACW 28858' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:39.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:39.768 -07 000000547 INF: FPGA: Recv ZDACR 28858
17-03-17 17:48:39.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.928 -07 000000448 INF: FPGA: Recv ZSGSRD 29857
17-03-17 17:48:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.938 -07 000000475 INF: FPGA: Recv ZSGSRD 29856
17-03-17 17:48:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.948 -07 000000541 INF: FPGA: Recv ZSGSRD 29856
17-03-17 17:48:39.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.958 -07 000000569 INF: FPGA: Recv ZSGSRD 29844
17-03-17 17:48:39.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29860
17-03-17 17:48:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.978 -07 000000623 INF: FPGA: Recv ZSGSRD 29859
17-03-17 17:48:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.988 -07 000000541 INF: FPGA: Recv ZSGSRD 29850
17-03-17 17:48:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:39.998 -07 000000569 INF: FPGA: Recv ZSGSRD 29853
17-03-17 17:48:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:40.008 -07 000000608 INF: FPGA: Recv ZSGSRD 29857
17-03-17 17:48:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:40.018 -07 000000448 INF: FPGA: Recv ZSGSRD 29855
17-03-17 17:48:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:40.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:40.028 -07 000000541 INF: FPGA: Recv ZPIEZORD 25358
17-03-17 17:48:40.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:40.038 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.9 V.
17-03-17 17:48:40.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29856 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29844 (-131.3 uncal um), Max = 29860 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:48:40.038 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 5, negNoise = 11
17-03-17 17:48:40.038 -07 000000610 INF: Z Motor: After move to -0.132103, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:40.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:48:40.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:40.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:40.038 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:40.038 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:40.038 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:40.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:40.038 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:40.038 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:40.038 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:48:40.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:40.038 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:40.038 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:40.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:48:40.038 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:40.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:40.048 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:40.048 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:48:40.048 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:48:40.058 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:40.058 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:48:40.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29035 150\n [Camera]
17-03-17 17:48:40.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:40.648 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:40.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:40.648 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:40.648 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:40.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:40.648 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:40.648 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:40.648 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:48:40.658 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:40.658 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:40.818 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.944485,
17-03-17 17:48:40.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29035 775
17-03-17 17:48:40.988 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:41.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:48:41.018 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:48:41.018 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:41.028 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:41.028 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:48:41.028 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:48:41.028 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:41.028 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:41.028 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:48:41.038 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:48:41.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:41.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:41.178 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:41.288 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:41.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:41.288 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:41.288 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 17:48:41.288 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:41.288 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:41.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:48:41.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:48:41.368 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:41.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29035 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:48:41.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:41.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22509765625, Z-Position -0.132118205503408. ------
17-03-17 17:48:41.378 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:41.378 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13826 mm
17-03-17 17:48:41.378 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:41.378 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:41.378 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:48:41.378 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2251 mm, delta = 0.8375 mm
17-03-17 17:48:41.378 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30203, sync = True, waitForSettling = False)
17-03-17 17:48:41.378 -07 000000459 INF: Z Motor: Moving to -0.138260 mm, started at -0.132118 mm, distance = -6.14 um
17-03-17 17:48:41.388 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:41.388 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:41.388 -07 000000618 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:48:41.398 -07 000000459 INF: FPGA: Xmit ZDACW 30203\n [Z Motor]
17-03-17 17:48:41.398 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:48:41.398 -07 000000382 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:41.398 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:41.398 -07 000000382 INF: Y Motor: Moving 1340 steps-15
17-03-17 17:48:41.398 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:48:41.408 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:41.408 -07 000000459 INF: FPGA: 'ZDACW 30203' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:48:41.418 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:41.428 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:41.428 -07 000000608 INF: FPGA: Recv ZDACR 30203
17-03-17 17:48:41.438 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:41.438 -07 000000459 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:48:41.528 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:41.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:41.608 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:41.608 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:48:41.668 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:48:41.668 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:48:41.668 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:41.678 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:48:41.678 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:48:41.678 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:41.678 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:41.678 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:41.678 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 17:48:41.678 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:48:41.788 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:48:41.788 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:48:41.818 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:41.828 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:48:41.828 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:48:41.828 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:41.828 -07 000000382 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:48:41.828 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.120 mm/sec
17-03-17 17:48:42.778 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:42.778 -07 000000462 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:48:42.788 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.788 -07 000000382 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:42.798 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:42.798 -07 000000382 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:48:42.798 -07 000000382 INF: Y Motor: Moved to 64.0576 after 1421 ms (table move)
17-03-17 17:48:42.798 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138260 mm (DAC = 30203)
17-03-17 17:48:42.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.808 -07 000000448 INF: FPGA: Recv ZSGSRD 30820
17-03-17 17:48:42.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:48:42.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.808 -07 000000382 INF: FPGA: Recv ZSGSRD 30820
17-03-17 17:48:42.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:42.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.818 -07 000000382 INF: FPGA: Recv ZSGSRD 30804
17-03-17 17:48:42.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.828 -07 000000448 INF: FPGA: Recv ZSGSRD 30810
17-03-17 17:48:42.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.838 -07 000000462 INF: FPGA: Recv ZSGSRD 30816
17-03-17 17:48:42.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.848 -07 000000448 INF: FPGA: Recv ZSGSRD 30820
17-03-17 17:48:42.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30806
17-03-17 17:48:42.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.868 -07 000000462 INF: FPGA: Recv ZSGSRD 30811
17-03-17 17:48:42.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.878 -07 000000462 INF: FPGA: Recv ZSGSRD 30809
17-03-17 17:48:42.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:42.888 -07 000000462 INF: FPGA: Recv ZSGSRD 30807
17-03-17 17:48:42.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.898 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:42.898 -07 000000551 INF: FPGA: Recv ZPIEZORD 26613
17-03-17 17:48:42.908 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:42.908 -07 000000541 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.609 V. Piezo Error = -9.2 V.
17-03-17 17:48:42.908 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30812 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30810 (-137.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30804 (-137.4 uncal um), Max = 30820 (-137.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:48:42.908 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30812, posNoise = 8, negNoise = 8
17-03-17 17:48:42.908 -07 000000541 INF: Z Motor: After move to -0.138260, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:42.908 -07 000000541 INF: Z Motor: Settle wait time = 1423 ms, measure time = 102 ms (allowed 150 ms), total time = 1525 ms
17-03-17 17:48:42.908 -07 000000541 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:42.958 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 17:48:42.958 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:42.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:42.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:42.958 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:42.958 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:42.958 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:42.958 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:42.958 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:42.958 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:42.968 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:42.968 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:42.978 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:48:42.978 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:48:42.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:43.028 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:43.228 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:43.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:43.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:43.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start.
17-03-17 17:48:43.268 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:43.268 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:43.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 17:48:43.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 17:48:43.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:43.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:43.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 17:48:43.368 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:43.368 -07 000000448 INF: Autofocus start
17-03-17 17:48:43.368 -07 000000448 INF: MeasureProfile start
17-03-17 17:48:43.368 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:43.378 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:43.378 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:43.378 -07 000000448 INF: MeasureProfile done
17-03-17 17:48:43.378 -07 000000448 INF: X=64  Z correction [um]=0.2839165
17-03-17 17:48:43.378 -07 000000448 INF: Autofocus finished
17-03-17 17:48:43.578 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:43.578 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:43.578 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138266176523074. ----------
17-03-17 17:48:43.578 -07 000000610 INF: Cycle	5	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:43.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28777, sync = True, waitForSettling = True)
17-03-17 17:48:43.588 -07 000000610 INF: Z Motor: Moving to -0.131733 mm, started at -0.138266 mm, distance = 6.53 um
17-03-17 17:48:43.588 -07 000000610 INF: FPGA: Xmit ZDACW 28777\n [Z Motor]
17-03-17 17:48:43.588 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:48:43.598 -07 000000610 INF: FPGA: 'ZDACW 28777' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:43.598 -07 000000448 INF: FPGA: Recv ZDACR 28777
17-03-17 17:48:43.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:43.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.758 -07 000000541 INF: FPGA: Recv ZSGSRD 29795
17-03-17 17:48:43.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:43.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.768 -07 000000541 INF: FPGA: Recv ZSGSRD 29801
17-03-17 17:48:43.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.778 -07 000000462 INF: FPGA: Recv ZSGSRD 29796
17-03-17 17:48:43.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.788 -07 000000551 INF: FPGA: Recv ZSGSRD 29799
17-03-17 17:48:43.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:43.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29798
17-03-17 17:48:43.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.808 -07 000000551 INF: FPGA: Recv ZSGSRD 29796
17-03-17 17:48:43.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.818 -07 000000480 INF: FPGA: Recv ZSGSRD 29792
17-03-17 17:48:43.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.828 -07 000000551 INF: FPGA: Recv ZSGSRD 29796
17-03-17 17:48:43.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.838 -07 000000382 INF: FPGA: Recv ZSGSRD 29793
17-03-17 17:48:43.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:43.848 -07 000000462 INF: FPGA: Recv ZSGSRD 29799
17-03-17 17:48:43.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:43.858 -07 000000382 INF: FPGA: Recv ZPIEZORD 25297
17-03-17 17:48:43.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:43.868 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.9 V.
17-03-17 17:48:43.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29796 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29792 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:48:43.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29796, posNoise = 5, negNoise = 4
17-03-17 17:48:43.868 -07 000000610 INF: Z Motor: After move to -0.131733, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:43.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:48:43.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:43.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:43.868 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:43.868 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:43.868 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:43.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:43.868 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:43.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:43.868 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:43.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:43.868 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:43.868 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:43.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:43.868 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:43.878 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:48:43.878 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:43.878 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:43.878 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:48:43.888 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:48:43.888 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:48:43.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28954 150\n [Camera]
17-03-17 17:48:44.088 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:44.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:44.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:44.478 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:44.478 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:44.478 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 17:48:44.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:44.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:44.488 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:44.488 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:44.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:48:44.668 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28954 775
17-03-17 17:48:44.818 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:44.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:48:44.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:48:44.858 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:48:44.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:44.858 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:48:44.858 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:44.858 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:44.858 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:44.858 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:48:44.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:48:45.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:45.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:45.008 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:45.008 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:45.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:48:45.008 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:45.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:45.008 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:45.008 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:45.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:48:45.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:45.198 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:45.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28954 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:48:45.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:45.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131739176987044. ------
17-03-17 17:48:45.208 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13820 mm
17-03-17 17:48:45.208 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:45.208 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:45.208 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:48:45.208 -07 000000541 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:48:45.208 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30191, sync = True, waitForSettling = False)
17-03-17 17:48:45.208 -07 000000382 INF: Z Motor: Moving to -0.138206 mm, started at -0.131739 mm, distance = -6.47 um
17-03-17 17:48:45.208 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:45.218 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:45.218 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:45.218 -07 000000618 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:48:45.228 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:48:45.228 -07 000000541 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:45.228 -07 000000541 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:45.228 -07 000000541 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:48:45.228 -07 000000382 INF: FPGA: Xmit ZDACW 30191\n [Z Motor]
17-03-17 17:48:45.228 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:48:45.238 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:45.238 -07 000000382 INF: FPGA: 'ZDACW 30191' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:48:45.248 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:45.258 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:45.258 -07 000000569 INF: FPGA: Recv ZDACR 30191
17-03-17 17:48:45.268 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:45.268 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:48:45.388 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:48:45.388 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:48:45.388 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:45.398 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:48:45.398 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:48:45.398 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:45.398 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:45.398 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:48:45.398 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:48:45.398 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:48:45.438 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:45.438 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:48:45.618 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:48:45.618 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:48:45.648 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:45.658 -07 000000480 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:48:45.658 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:48:45.658 -07 000000541 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:45.658 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:48:45.658 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.098 mm/sec
17-03-17 17:48:46.178 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.937621,
17-03-17 17:48:46.528 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:46.608 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:46.608 -07 000000476 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:48:46.618 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:46.618 -07 000000541 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:46.638 -07 000000541 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:46.638 -07 000000541 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:46.638 -07 000000541 INF: Y Motor: Moved to 64.8794 after 1423 ms (table move)
17-03-17 17:48:46.638 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138206 mm (DAC = 30191)
17-03-17 17:48:46.638 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.638 -07 000000475 INF: FPGA: Recv ZSGSRD 30802
17-03-17 17:48:46.648 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:46.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.648 -07 000000541 INF: FPGA: Recv ZSGSRD 30801
17-03-17 17:48:46.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.658 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.658 -07 000000475 INF: FPGA: Recv ZSGSRD 30795
17-03-17 17:48:46.668 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.668 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.668 -07 000000541 INF: FPGA: Recv ZSGSRD 30798
17-03-17 17:48:46.678 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.678 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.678 -07 000000475 INF: FPGA: Recv ZSGSRD 30803
17-03-17 17:48:46.688 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.688 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30810
17-03-17 17:48:46.698 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.698 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30813
17-03-17 17:48:46.708 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.718 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30798
17-03-17 17:48:46.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:46.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.728 -07 000000382 INF: FPGA: Recv ZSGSRD 30798
17-03-17 17:48:46.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.738 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:46.738 -07 000000480 INF: FPGA: Recv ZSGSRD 30795
17-03-17 17:48:46.748 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.748 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:46.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 26633
17-03-17 17:48:46.758 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:46.758 -07 000000551 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -9.2 V.
17-03-17 17:48:46.758 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30801 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30800 (-137.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30795 (-137.4 uncal um), Max = 30813 (-137.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:48:46.758 -07 000000551 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30801, posNoise = 12, negNoise = 6
17-03-17 17:48:46.758 -07 000000551 INF: Z Motor: After move to -0.138206, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:46.758 -07 000000551 INF: Z Motor: Settle wait time = 1426 ms, measure time = 117 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:48:46.758 -07 000000551 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:46.798 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 17:48:46.798 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:46.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:46.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:46.798 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:46.798 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:46.798 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:46.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:46.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:46.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:46.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:46.808 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:46.818 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:48:46.818 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:48:46.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:46.868 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:47.068 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:47.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:47.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:47.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 17:48:47.108 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:47.108 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:47.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 17:48:47.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:48:47.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:47.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:47.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:48:47.208 -07 000000541 INF: Autofocus start
17-03-17 17:48:47.208 -07 000000541 INF: MeasureProfile start
17-03-17 17:48:47.208 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:47.208 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:47.218 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:47.218 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:47.218 -07 000000541 INF: MeasureProfile done
17-03-17 17:48:47.218 -07 000000541 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:48:47.218 -07 000000541 INF: Autofocus finished
17-03-17 17:48:47.418 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:47.418 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:47.418 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138195510189514. ----------
17-03-17 17:48:47.418 -07 000000610 INF: Cycle	5	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:47.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28698, sync = True, waitForSettling = True)
17-03-17 17:48:47.428 -07 000000610 INF: Z Motor: Moving to -0.131371 mm, started at -0.138196 mm, distance = 6.82 um
17-03-17 17:48:47.428 -07 000000610 INF: FPGA: Xmit ZDACW 28698\n [Z Motor]
17-03-17 17:48:47.428 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:48:47.438 -07 000000610 INF: FPGA: 'ZDACW 28698' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:47.438 -07 000000448 INF: FPGA: Recv ZDACR 28698
17-03-17 17:48:47.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:47.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.598 -07 000000448 INF: FPGA: Recv ZSGSRD 29743
17-03-17 17:48:47.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:47.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.608 -07 000000459 INF: FPGA: Recv ZSGSRD 29741
17-03-17 17:48:47.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.618 -07 000000551 INF: FPGA: Recv ZSGSRD 29746
17-03-17 17:48:47.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.628 -07 000000459 INF: FPGA: Recv ZSGSRD 29740
17-03-17 17:48:47.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.638 -07 000000541 INF: FPGA: Recv ZSGSRD 29739
17-03-17 17:48:47.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29743
17-03-17 17:48:47.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.658 -07 000000382 INF: FPGA: Recv ZSGSRD 29736
17-03-17 17:48:47.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29748
17-03-17 17:48:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29740
17-03-17 17:48:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:47.688 -07 000000459 INF: FPGA: Recv ZSGSRD 29738
17-03-17 17:48:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:47.698 -07 000000541 INF: FPGA: Recv ZPIEZORD 25256
17-03-17 17:48:47.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:47.708 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.8 V.
17-03-17 17:48:47.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29741 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29740 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29736 (-130.6 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:48:47.708 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29741, posNoise = 7, negNoise = 5
17-03-17 17:48:47.708 -07 000000610 INF: Z Motor: After move to -0.131371, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:47.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:48:47.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:47.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:47.708 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:47.708 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:47.708 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:47.708 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:47.708 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:47.708 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:47.708 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:47.708 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:47.708 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:47.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:47.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:47.708 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:48:47.708 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:47.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:47.718 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:48:47.718 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:48:47.728 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:48:47.728 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:47.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28875 150\n [Camera]
17-03-17 17:48:47.928 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:48.318 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:48.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:48.318 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:48.318 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:48.318 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:48:48.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:48.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:48.318 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:48.318 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:48.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:48:48.508 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28875 775
17-03-17 17:48:48.658 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:48:48.698 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:48:48.698 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:48:48.698 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:48.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:48:48.698 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:48:48.698 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:48.698 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:48.698 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:48:48.698 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:48.708 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:48:48.848 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:48.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:48.848 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:48.848 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:48.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) start.
17-03-17 17:48:48.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:48.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:48.858 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:48.858 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:48.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:48:49.038 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:48:49.038 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:49.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28875 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:48:49.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:49.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131385845319248. ------
17-03-17 17:48:49.048 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:49.048 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13806 mm
17-03-17 17:48:49.048 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:49.048 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:48:49.048 -07 000000541 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:48:49.048 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:49.058 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:48:49.058 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30159, sync = True, waitForSettling = False)
17-03-17 17:48:49.058 -07 000000623 INF: Z Motor: Moving to -0.138059 mm, started at -0.131386 mm, distance = -6.67 um
17-03-17 17:48:49.058 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:49.058 -07 000000547 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:48:49.068 -07 000000541 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:49.068 -07 000000623 INF: FPGA: Xmit ZDACW 30159\n [Z Motor]
17-03-17 17:48:49.068 -07 000000541 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:49.068 -07 000000541 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:49.068 -07 000000541 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:48:49.068 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:48:49.078 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:49.078 -07 000000623 INF: FPGA: 'ZDACW 30159' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:49.088 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:49.098 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:49.098 -07 000000547 INF: FPGA: Recv ZDACR 30159
17-03-17 17:48:49.108 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:49.108 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 17:48:49.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:48:49.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:48:49.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:49.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:48:49.238 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:48:49.238 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:49.238 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:49.238 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:48:49.238 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:48:49.248 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:48:49.278 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:49.278 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:48:49.458 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:48:49.458 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:48:49.498 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:49.508 -07 000000459 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:48:49.508 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:48:49.508 -07 000000541 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:49.508 -07 000000541 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:48:49.508 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 17:48:50.458 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:50.458 -07 000000438 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:48:50.468 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:50.468 -07 000000541 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:50.488 -07 000000541 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:50.488 -07 000000541 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:50.488 -07 000000541 INF: Y Motor: Moved to 65.7148 after 1431 ms (table move)
17-03-17 17:48:50.488 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138059 mm (DAC = 30159)
17-03-17 17:48:50.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.488 -07 000000541 INF: FPGA: Recv ZSGSRD 30783
17-03-17 17:48:50.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:50.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.498 -07 000000382 INF: FPGA: Recv ZSGSRD 30774
17-03-17 17:48:50.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.508 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.508 -07 000000382 INF: FPGA: Recv ZSGSRD 30780
17-03-17 17:48:50.518 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.518 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.518 -07 000000541 INF: FPGA: Recv ZSGSRD 30785
17-03-17 17:48:50.528 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.528 -07 000000382 INF: FPGA: Recv ZSGSRD 30785
17-03-17 17:48:50.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.538 -07 000000541 INF: FPGA: Recv ZSGSRD 30785
17-03-17 17:48:50.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.548 -07 000000382 INF: FPGA: Recv ZSGSRD 30777
17-03-17 17:48:50.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.558 -07 000000382 INF: FPGA: Recv ZSGSRD 30779
17-03-17 17:48:50.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30778
17-03-17 17:48:50.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.578 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:50.578 -07 000000623 INF: FPGA: Recv ZSGSRD 30783
17-03-17 17:48:50.588 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.588 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:50.588 -07 000000623 INF: FPGA: Recv ZPIEZORD 26614
17-03-17 17:48:50.598 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:50.598 -07 000000448 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.2 V.
17-03-17 17:48:50.598 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30781 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30782 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30774 (-137.2 uncal um), Max = 30785 (-137.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:48:50.598 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30781, posNoise = 4, negNoise = 7
17-03-17 17:48:50.598 -07 000000448 INF: Z Motor: After move to -0.138059, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:50.598 -07 000000448 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:48:50.598 -07 000000448 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:50.648 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 17:48:50.648 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:50.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:50.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:50.648 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:50.648 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:50.648 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:50.648 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:50.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:50.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:50.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:50.658 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:50.668 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:48:50.668 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:48:50.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:50.718 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:50.918 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:50.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:50.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:50.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 17:48:50.948 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:50.958 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:50.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:48:51.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 17:48:51.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:51.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:48:51.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 17:48:51.058 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:51.058 -07 000000608 INF: Autofocus start
17-03-17 17:48:51.058 -07 000000608 INF: MeasureProfile start
17-03-17 17:48:51.058 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:51.068 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:51.068 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:51.068 -07 000000608 INF: MeasureProfile done
17-03-17 17:48:51.068 -07 000000608 INF: X=9  Z correction [um]=0.01934518
17-03-17 17:48:51.068 -07 000000608 INF: Autofocus finished
17-03-17 17:48:51.268 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:51.268 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:51.268 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.138067025946679. ----------
17-03-17 17:48:51.278 -07 000000610 INF: Cycle	5	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:51.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28676, sync = True, waitForSettling = True)
17-03-17 17:48:51.278 -07 000000610 INF: Z Motor: Moving to -0.131270 mm, started at -0.138067 mm, distance = 6.80 um
17-03-17 17:48:51.278 -07 000000610 INF: FPGA: Xmit ZDACW 28676\n [Z Motor]
17-03-17 17:48:51.278 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:48:51.288 -07 000000610 INF: FPGA: 'ZDACW 28676' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:51.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:51.288 -07 000000438 INF: FPGA: Recv ZDACR 28676
17-03-17 17:48:51.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:51.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29727
17-03-17 17:48:51.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:51.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29734
17-03-17 17:48:51.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.468 -07 000000438 INF: FPGA: Recv ZSGSRD 29718
17-03-17 17:48:51.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29720
17-03-17 17:48:51.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29727
17-03-17 17:48:51.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29724
17-03-17 17:48:51.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29715
17-03-17 17:48:51.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.518 -07 000000623 INF: FPGA: Recv ZSGSRD 29723
17-03-17 17:48:51.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:51.528 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:51.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.538 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.940374,
17-03-17 17:48:51.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29729
17-03-17 17:48:51.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:51.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:51.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29721
17-03-17 17:48:51.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:51.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:51.578 -07 000000551 INF: FPGA: Recv ZPIEZORD 25279
17-03-17 17:48:51.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:48:51.588 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.8 V.
17-03-17 17:48:51.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29724 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29724 (-130.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29734 (-130.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:48:51.588 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29724, posNoise = 10, negNoise = 9
17-03-17 17:48:51.588 -07 000000610 INF: Z Motor: After move to -0.131270, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:51.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 308 ms)
17-03-17 17:48:51.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:51.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:51.588 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:51.588 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:51.588 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:51.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:51.588 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:51.588 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:51.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:48:51.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:51.588 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:51.588 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:51.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:51.588 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:51.588 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:51.588 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:51.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:48:51.598 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:48:51.608 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:48:51.608 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:48:51.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28853 150\n [Camera]
17-03-17 17:48:51.808 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:52.198 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:52.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:52.198 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:52.198 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:52.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:48:52.198 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:52.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:52.198 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:52.198 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:52.198 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:48:52.388 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28853 775
17-03-17 17:48:52.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:52.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:48:52.568 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:48:52.568 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:52.578 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:48:52.578 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:48:52.578 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:52.578 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:52.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:48:52.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:48:52.588 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:48:52.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:52.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:52.728 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:52.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:52.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:52.858 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:52.858 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:52.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:48:52.868 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:52.868 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1068994152, 0x0, 418435064) start.
17-03-17 17:48:52.918 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:48:52.918 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:52.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28853 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:48:52.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:52.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.131276633712838. ------
17-03-17 17:48:52.928 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13755 mm
17-03-17 17:48:52.928 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:52.928 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:52.928 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:48:52.928 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:48:52.928 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:52.928 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30047, sync = True, waitForSettling = False)
17-03-17 17:48:52.928 -07 000000618 INF: Z Motor: Moving to -0.137546 mm, started at -0.131277 mm, distance = -6.27 um
17-03-17 17:48:52.938 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:52.938 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:52.938 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:48:52.948 -07 000000618 INF: FPGA: Xmit ZDACW 30047\n [Z Motor]
17-03-17 17:48:52.948 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:48:52.948 -07 000000438 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:52.948 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:52.948 -07 000000438 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:48:52.948 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:48:52.958 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:52.958 -07 000000618 INF: FPGA: 'ZDACW 30047' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:48:52.968 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:52.978 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:52.978 -07 000000569 INF: FPGA: Recv ZDACR 30047
17-03-17 17:48:52.988 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:48:52.988 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:48:53.158 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:53.158 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:48:53.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1068994152, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:48:53.238 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:48:53.238 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:53.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:48:53.238 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:48:53.238 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:53.238 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:53.248 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:53.248 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 17:48:53.248 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:48:53.338 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 17:48:53.338 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:48:53.378 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:53.378 -07 000000476 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:48:53.388 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:53.388 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:53.388 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:48:53.388 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.121 mm/sec
17-03-17 17:48:54.338 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:54.338 -07 000000618 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:48:54.348 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.348 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:54.358 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:54.358 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:54.358 -07 000000438 INF: Y Motor: Moved to 66.5396 after 1434 ms (table move)
17-03-17 17:48:54.368 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137546 mm (DAC = 30047)
17-03-17 17:48:54.368 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.368 -07 000000627 INF: FPGA: Recv ZSGSRD 30717
17-03-17 17:48:54.378 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:54.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.378 -07 000000438 INF: FPGA: Recv ZSGSRD 30698
17-03-17 17:48:54.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.388 -07 000000627 INF: FPGA: Recv ZSGSRD 30699
17-03-17 17:48:54.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.398 -07 000000551 INF: FPGA: Recv ZSGSRD 30706
17-03-17 17:48:54.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30703
17-03-17 17:48:54.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30705
17-03-17 17:48:54.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:54.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.428 -07 000000462 INF: FPGA: Recv ZSGSRD 30698
17-03-17 17:48:54.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.438 -07 000000618 INF: FPGA: Recv ZSGSRD 30698
17-03-17 17:48:54.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.448 -07 000000462 INF: FPGA: Recv ZSGSRD 30700
17-03-17 17:48:54.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:54.458 -07 000000382 INF: FPGA: Recv ZSGSRD 30698
17-03-17 17:48:54.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.468 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:54.468 -07 000000462 INF: FPGA: Recv ZPIEZORD 26531
17-03-17 17:48:54.478 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:54.478 -07 000000475 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.585 V. Piezo Error = -9.2 V.
17-03-17 17:48:54.478 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30702 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30700 (-136.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30698 (-136.7 uncal um), Max = 30717 (-136.9 uncal um), Pos Noise = 15 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:48:54.478 -07 000000475 INF: Z Motor: ADC noise = 15, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30702, posNoise = 15, negNoise = 4
17-03-17 17:48:54.478 -07 000000475 INF: Z Motor: After move to -0.137546, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:54.478 -07 000000475 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-17 17:48:54.478 -07 000000475 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:54.528 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:48:54.528 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:54.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:54.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:54.528 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:54.528 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:54.528 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:54.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:54.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:54.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:54.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:48:54.538 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:54.548 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:48:54.548 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:48:54.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:54.598 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:54.798 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:54.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:54.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:54.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) start.
17-03-17 17:48:54.838 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:54.838 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:54.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:48:54.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:48:54.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:54.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:54.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 17:48:54.938 -07 000000480 INF: Autofocus start
17-03-17 17:48:54.938 -07 000000480 INF: MeasureProfile start
17-03-17 17:48:54.938 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:54.938 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:54.948 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:54.948 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:54.948 -07 000000480 INF: MeasureProfile done
17-03-17 17:48:54.948 -07 000000480 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 17:48:54.948 -07 000000480 INF: Autofocus finished
17-03-17 17:48:55.148 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:55.148 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:55.148 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.13755951318748. ----------
17-03-17 17:48:55.148 -07 000000610 INF: Cycle	5	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:55.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28508, sync = True, waitForSettling = True)
17-03-17 17:48:55.158 -07 000000610 INF: Z Motor: Moving to -0.130501 mm, started at -0.137560 mm, distance = 7.06 um
17-03-17 17:48:55.158 -07 000000610 INF: FPGA: Xmit ZDACW 28508\n [Z Motor]
17-03-17 17:48:55.158 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:48:55.168 -07 000000610 INF: FPGA: 'ZDACW 28508' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:55.168 -07 000000569 INF: FPGA: Recv ZDACR 28508
17-03-17 17:48:55.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.328 -07 000000382 INF: FPGA: Recv ZSGSRD 29601
17-03-17 17:48:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.338 -07 000000448 INF: FPGA: Recv ZSGSRD 29602
17-03-17 17:48:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.348 -07 000000551 INF: FPGA: Recv ZSGSRD 29605
17-03-17 17:48:55.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.358 -07 000000448 INF: FPGA: Recv ZSGSRD 29606
17-03-17 17:48:55.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.368 -07 000000551 INF: FPGA: Recv ZSGSRD 29607
17-03-17 17:48:55.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.378 -07 000000382 INF: FPGA: Recv ZSGSRD 29602
17-03-17 17:48:55.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.388 -07 000000448 INF: FPGA: Recv ZSGSRD 29603
17-03-17 17:48:55.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.398 -07 000000448 INF: FPGA: Recv ZSGSRD 29607
17-03-17 17:48:55.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29607
17-03-17 17:48:55.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:55.418 -07 000000627 INF: FPGA: Recv ZSGSRD 29603
17-03-17 17:48:55.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:55.428 -07 000000382 INF: FPGA: Recv ZPIEZORD 25116
17-03-17 17:48:55.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:55.438 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.8 V.
17-03-17 17:48:55.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29601 (-129.7 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:48:55.438 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 3, negNoise = 3
17-03-17 17:48:55.438 -07 000000610 INF: Z Motor: After move to -0.130501, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:55.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:48:55.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:55.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:55.438 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:55.438 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:55.438 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:55.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:55.438 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:55.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:55.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:48:55.438 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:55.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:55.438 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:55.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:55.448 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:55.448 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:48:55.448 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:55.448 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:48:55.448 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:55.448 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:48:55.448 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:55.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28684 150\n [Camera]
17-03-17 17:48:55.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:48:56.048 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:48:56.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:48:56.048 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:56.048 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:56.048 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:48:56.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:48:56.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:48:56.048 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:56.168 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:56.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:48:56.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28684 775
17-03-17 17:48:56.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:48:56.428 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:48:56.428 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:48:56.428 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:56.428 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:56.428 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:48:56.528 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:48:56.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:48:56.538 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:48:56.538 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:48:56.538 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:56.538 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:48:56.548 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 17:48:56.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:48:56.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:48:56.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:48:56.578 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:48:56.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 17:48:56.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:48:56.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:48:56.578 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:48:56.578 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:48:56.578 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 17:48:56.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:48:56.768 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:48:56.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28684 150' command took 2 ms to send, 1306 ms to get response, and 1315 ms overall
17-03-17 17:48:56.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:48:56.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130505728255826. ------
17-03-17 17:48:56.778 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:56.778 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13734 mm
17-03-17 17:48:56.778 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:48:56.778 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:56.778 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:48:56.778 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:48:56.788 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:48:56.788 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:48:56.798 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:56.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:48:56.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:48:56.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:56.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:48:56.958 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:48:56.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:56.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:56.968 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:48:56.968 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:48:56.978 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:48:56.978 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30003, sync = True, waitForSettling = False)
17-03-17 17:48:56.978 -07 000000462 INF: Z Motor: Moving to -0.137345 mm, started at -0.130506 mm, distance = -6.84 um
17-03-17 17:48:56.978 -07 000000462 INF: FPGA: Xmit ZDACW 30003\n [Z Motor]
17-03-17 17:48:56.988 -07 000000627 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:48:56.988 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:48:56.988 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 180 ms to get response, and 202 ms overall
17-03-17 17:48:56.988 -07 000000480 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:56.988 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:48:56.988 -07 000000480 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:48:56.988 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.937621,
17-03-17 17:48:56.988 -07 000000462 INF: FPGA: 'ZDACW 30003' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:48:56.988 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:48:56.988 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 17:48:56.998 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:48:57.008 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:57.008 -07 000000382 INF: FPGA: Recv ZDACR 30003
17-03-17 17:48:57.018 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:48:57.018 -07 000000462 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 17:48:57.368 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:48:57.368 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:48:57.408 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:57.408 -07 000000462 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:48:57.418 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:57.418 -07 000000480 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:57.418 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:48:57.418 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.178 mm/sec
17-03-17 17:48:58.368 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:48:58.368 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:48:58.378 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:58.378 -07 000000480 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:48:58.398 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:48:58.398 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:48:58.398 -07 000000480 INF: Y Motor: Moved to 67.3726 after 1612 ms (table move)
17-03-17 17:48:58.398 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137345 mm (DAC = 30003)
17-03-17 17:48:58.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.398 -07 000000382 INF: FPGA: Recv ZSGSRD 30675
17-03-17 17:48:58.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:58.408 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.408 -07 000000547 INF: FPGA: Recv ZSGSRD 30665
17-03-17 17:48:58.418 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.418 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.418 -07 000000462 INF: FPGA: Recv ZSGSRD 30668
17-03-17 17:48:58.428 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.428 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.428 -07 000000608 INF: FPGA: Recv ZSGSRD 30668
17-03-17 17:48:58.438 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.438 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30674
17-03-17 17:48:58.448 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.448 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.448 -07 000000608 INF: FPGA: Recv ZSGSRD 30674
17-03-17 17:48:58.458 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.458 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.458 -07 000000462 INF: FPGA: Recv ZSGSRD 30673
17-03-17 17:48:58.468 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.468 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.468 -07 000000627 INF: FPGA: Recv ZSGSRD 30666
17-03-17 17:48:58.478 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.478 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.478 -07 000000462 INF: FPGA: Recv ZSGSRD 30663
17-03-17 17:48:58.488 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.488 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:58.488 -07 000000627 INF: FPGA: Recv ZSGSRD 30670
17-03-17 17:48:58.498 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.498 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:58.498 -07 000000608 INF: FPGA: Recv ZPIEZORD 26500
17-03-17 17:48:58.508 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:58.508 -07 000000569 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -9.2 V.
17-03-17 17:48:58.508 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30670 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30669 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30663 (-136.5 uncal um), Max = 30675 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:48:58.508 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30670, posNoise = 5, negNoise = 7
17-03-17 17:48:58.508 -07 000000569 INF: Z Motor: After move to -0.137345, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:58.508 -07 000000569 INF: Z Motor: Settle wait time = 1418 ms, measure time = 107 ms (allowed 150 ms), total time = 1525 ms
17-03-17 17:48:58.508 -07 000000569 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:48:58.558 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1777 ms
17-03-17 17:48:58.558 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:48:58.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:58.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:58.558 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:58.558 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:58.558 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:48:58.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:58.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:58.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:48:58.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:58.568 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:48:58.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:48:58.578 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:48:58.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:48:58.628 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:48:58.828 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:48:58.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:48:58.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:48:58.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) start.
17-03-17 17:48:58.868 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:48:58.868 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:48:58.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 17:48:58.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1104416416, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:48:58.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:48:58.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:48:58.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:48:58.968 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:48:58.968 -07 000000623 INF: Autofocus start
17-03-17 17:48:58.968 -07 000000623 INF: MeasureProfile start
17-03-17 17:48:58.968 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:48:58.978 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:48:58.978 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:48:58.988 -07 000000623 INF: MeasureProfile done
17-03-17 17:48:58.988 -07 000000623 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 17:48:58.988 -07 000000623 INF: Autofocus finished
17-03-17 17:48:59.178 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:48:59.178 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:48:59.178 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137353938398944. ----------
17-03-17 17:48:59.178 -07 000000610 INF: Cycle	5	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:48:59.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28464, sync = True, waitForSettling = True)
17-03-17 17:48:59.188 -07 000000610 INF: Z Motor: Moving to -0.130300 mm, started at -0.137354 mm, distance = 7.05 um
17-03-17 17:48:59.188 -07 000000610 INF: FPGA: Xmit ZDACW 28464\n [Z Motor]
17-03-17 17:48:59.188 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:48:59.198 -07 000000610 INF: FPGA: 'ZDACW 28464' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:48:59.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:48:59.198 -07 000000569 INF: FPGA: Recv ZDACR 28464
17-03-17 17:48:59.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:48:59.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.358 -07 000000541 INF: FPGA: Recv ZSGSRD 29575
17-03-17 17:48:59.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:48:59.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.368 -07 000000569 INF: FPGA: Recv ZSGSRD 29574
17-03-17 17:48:59.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.378 -07 000000623 INF: FPGA: Recv ZSGSRD 29575
17-03-17 17:48:59.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.388 -07 000000547 INF: FPGA: Recv ZSGSRD 29575
17-03-17 17:48:59.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.398 -07 000000608 INF: FPGA: Recv ZSGSRD 29574
17-03-17 17:48:59.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.408 -07 000000480 INF: FPGA: Recv ZSGSRD 29575
17-03-17 17:48:59.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.418 -07 000000382 INF: FPGA: Recv ZSGSRD 29572
17-03-17 17:48:59.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.428 -07 000000480 INF: FPGA: Recv ZSGSRD 29571
17-03-17 17:48:59.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29571
17-03-17 17:48:59.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:48:59.448 -07 000000541 INF: FPGA: Recv ZSGSRD 29573
17-03-17 17:48:59.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:48:59.458 -07 000000462 INF: FPGA: Recv ZPIEZORD 25106
17-03-17 17:48:59.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:48:59.468 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.8 V.
17-03-17 17:48:59.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29574 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29574 (-129.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29571 (-129.5 uncal um), Max = 29575 (-129.5 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:48:59.468 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29574, posNoise = 1, negNoise = 3
17-03-17 17:48:59.468 -07 000000610 INF: Z Motor: After move to -0.130300, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:48:59.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:48:59.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:48:59.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:48:59.468 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:48:59.468 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:48:59.468 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:48:59.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:48:59.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:48:59.468 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:48:59.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:48:59.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:48:59.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:48:59.468 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:48:59.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:48:59.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:48:59.478 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:48:59.478 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:48:59.488 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:48:59.488 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:48:59.488 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:48:59.488 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:48:59.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28640 150\n [Camera]
17-03-17 17:48:59.688 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 17:49:00.078 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:00.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:00.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:00.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:00.078 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:00.078 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:00.078 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:00.078 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 17:49:00.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:00.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1119092496, 0x0, 418435064) start.
17-03-17 17:49:00.268 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28640 775
17-03-17 17:49:00.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:00.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1119092496, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:49:00.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:49:00.458 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:00.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:49:00.458 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:49:00.458 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:00.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:00.468 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:00.468 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:49:00.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:49:00.608 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:00.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:00.608 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:00.608 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:00.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:49:00.608 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:00.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:00.608 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:00.608 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:00.608 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:49:00.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:00.798 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:00.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28640 150' command took 3 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:49:00.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:00.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130313001891574. ------
17-03-17 17:49:00.808 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13675 mm
17-03-17 17:49:00.808 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:00.808 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:00.808 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:49:00.808 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:49:00.808 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:00.808 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29874, sync = True, waitForSettling = False)
17-03-17 17:49:00.808 -07 000000480 INF: Z Motor: Moving to -0.136754 mm, started at -0.130313 mm, distance = -6.44 um
17-03-17 17:49:00.818 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:49:00.818 -07 000000480 INF: FPGA: Xmit ZDACW 29874\n [Z Motor]
17-03-17 17:49:00.818 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:49:00.828 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:00.828 -07 000000480 INF: FPGA: 'ZDACW 29874' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:49:00.828 -07 000000547 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:49:00.838 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:49:00.838 -07 000000541 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:00.838 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:00.838 -07 000000541 INF: Y Motor: Moving 1344 steps-21
17-03-17 17:49:00.838 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:00.848 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:00.848 -07 000000608 INF: FPGA: Recv ZDACR 29874
17-03-17 17:49:00.858 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:00.858 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:49:00.858 -07 000000480 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:49:00.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:49:00.988 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:49:00.988 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:00.988 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:49:00.988 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:49:00.988 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:00.998 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:00.998 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:49:00.998 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:49:00.998 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:49:01.038 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:01.038 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 17:49:01.228 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:49:01.228 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:49:01.268 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:01.268 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:49:01.278 -07 000000541 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:01.278 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:01.278 -07 000000541 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:49:01.278 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 17:49:01.528 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:01.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:02.228 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:02.228 -07 000000608 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:49:02.238 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:02.238 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:02.248 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:02.248 -07 000000541 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:02.248 -07 000000541 INF: Y Motor: Moved to 68.2056 after 1440 ms (table move)
17-03-17 17:49:02.258 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136754 mm (DAC = 29874)
17-03-17 17:49:02.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.258 -07 000000541 INF: FPGA: Recv ZSGSRD 30587
17-03-17 17:49:02.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:02.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.268 -07 000000462 INF: FPGA: Recv ZSGSRD 30577
17-03-17 17:49:02.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.278 -07 000000480 INF: FPGA: Recv ZSGSRD 30583
17-03-17 17:49:02.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.288 -07 000000462 INF: FPGA: Recv ZSGSRD 30571
17-03-17 17:49:02.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30577
17-03-17 17:49:02.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.308 -07 000000541 INF: FPGA: Recv ZSGSRD 30577
17-03-17 17:49:02.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.318 -07 000000480 INF: FPGA: Recv ZSGSRD 30577
17-03-17 17:49:02.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.328 -07 000000541 INF: FPGA: Recv ZSGSRD 30572
17-03-17 17:49:02.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.338 -07 000000608 INF: FPGA: Recv ZSGSRD 30571
17-03-17 17:49:02.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:02.348 -07 000000541 INF: FPGA: Recv ZSGSRD 30580
17-03-17 17:49:02.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:02.368 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:02.368 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.932187,
17-03-17 17:49:02.368 -07 000000608 INF: FPGA: Recv ZPIEZORD 26440
17-03-17 17:49:02.378 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:49:02.378 -07 000000382 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -9.1 V.
17-03-17 17:49:02.378 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30577 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30577 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30571 (-135.9 uncal um), Max = 30587 (-136.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:49:02.378 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30577, posNoise = 10, negNoise = 6
17-03-17 17:49:02.378 -07 000000382 INF: Z Motor: After move to -0.136754, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:02.378 -07 000000382 INF: Z Motor: Settle wait time = 1444 ms, measure time = 118 ms (allowed 150 ms), total time = 1562 ms
17-03-17 17:49:02.378 -07 000000382 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:02.418 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 17:49:02.418 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:02.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:02.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:02.418 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:02.418 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:02.418 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:02.418 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:02.418 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:02.418 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:02.428 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:02.428 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:02.438 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:49:02.438 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:49:02.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:02.488 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:02.688 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:02.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:02.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:02.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 17:49:02.728 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:02.728 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:02.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 17:49:02.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 17:49:02.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:02.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:02.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 17:49:02.828 -07 000000462 INF: Autofocus start
17-03-17 17:49:02.828 -07 000000462 INF: MeasureProfile start
17-03-17 17:49:02.828 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:02.828 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:02.838 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:02.838 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:02.838 -07 000000462 INF: MeasureProfile done
17-03-17 17:49:02.838 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:49:02.838 -07 000000462 INF: Autofocus finished
17-03-17 17:49:03.038 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:03.038 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:03.038 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.13675648666976. ----------
17-03-17 17:49:03.048 -07 000000610 INF: Cycle	5	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:03.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28369, sync = True, waitForSettling = True)
17-03-17 17:49:03.048 -07 000000610 INF: Z Motor: Moving to -0.129865 mm, started at -0.136756 mm, distance = 6.89 um
17-03-17 17:49:03.048 -07 000000610 INF: FPGA: Xmit ZDACW 28369\n [Z Motor]
17-03-17 17:49:03.048 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:49:03.058 -07 000000610 INF: FPGA: 'ZDACW 28369' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:03.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:03.058 -07 000000480 INF: FPGA: Recv ZDACR 28369
17-03-17 17:49:03.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.218 -07 000000438 INF: FPGA: Recv ZSGSRD 29509
17-03-17 17:49:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.228 -07 000000480 INF: FPGA: Recv ZSGSRD 29502
17-03-17 17:49:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.238 -07 000000382 INF: FPGA: Recv ZSGSRD 29505
17-03-17 17:49:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.248 -07 000000541 INF: FPGA: Recv ZSGSRD 29504
17-03-17 17:49:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29505
17-03-17 17:49:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.268 -07 000000608 INF: FPGA: Recv ZSGSRD 29511
17-03-17 17:49:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.278 -07 000000382 INF: FPGA: Recv ZSGSRD 29506
17-03-17 17:49:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.288 -07 000000438 INF: FPGA: Recv ZSGSRD 29502
17-03-17 17:49:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.298 -07 000000475 INF: FPGA: Recv ZSGSRD 29505
17-03-17 17:49:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:03.308 -07 000000438 INF: FPGA: Recv ZSGSRD 29504
17-03-17 17:49:03.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:03.318 -07 000000462 INF: FPGA: Recv ZPIEZORD 25023
17-03-17 17:49:03.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:03.328 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.8 V.
17-03-17 17:49:03.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29505 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29505 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29502 (-129.1 uncal um), Max = 29511 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:49:03.328 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29505, posNoise = 6, negNoise = 3
17-03-17 17:49:03.328 -07 000000610 INF: Z Motor: After move to -0.129865, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:03.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:49:03.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:03.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:03.328 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:03.328 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:03.328 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:03.328 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:03.328 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:03.328 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:03.328 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:03.328 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:03.328 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:03.328 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:03.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:49:03.338 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:03.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:03.338 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:03.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:49:03.348 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:03.348 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:49:03.348 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:49:03.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28545 150\n [Camera]
17-03-17 17:49:03.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:03.938 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:03.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:03.938 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:03.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:03.938 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:03.938 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:03.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:49:03.938 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:03.938 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:03.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:49:04.128 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28545 775
17-03-17 17:49:04.278 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:04.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:49:04.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:49:04.318 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:49:04.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:04.318 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:49:04.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:04.328 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:49:04.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:49:04.328 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:49:04.328 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:49:04.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:04.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:04.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:04.468 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:04.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:49:04.468 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:04.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:04.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:04.468 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:04.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:49:04.658 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:04.658 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:04.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28545 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:49:04.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:04.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129869731253792. ------
17-03-17 17:49:04.798 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13655 mm
17-03-17 17:49:04.798 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:04.798 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:04.798 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:04.798 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:49:04.798 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:49:04.798 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29830, sync = True, waitForSettling = False)
17-03-17 17:49:04.808 -07 000000608 INF: Z Motor: Moving to -0.136553 mm, started at -0.129870 mm, distance = -6.68 um
17-03-17 17:49:04.808 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:49:04.808 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:04.808 -07 000000551 INF: FPGA: Recv YRDPOS 139686
17-03-17 17:49:04.818 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:04.818 -07 000000382 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:04.818 -07 000000608 INF: FPGA: Xmit ZDACW 29830\n [Z Motor]
17-03-17 17:49:04.818 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:49:04.818 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:04.818 -07 000000382 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:49:04.828 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:04.828 -07 000000608 INF: FPGA: 'ZDACW 29830' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:49:04.838 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:04.848 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:04.848 -07 000000475 INF: FPGA: Recv ZDACR 29830
17-03-17 17:49:04.858 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:49:04.858 -07 000000608 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 17:49:04.858 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:49:04.858 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:49:04.858 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:04.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 17:49:04.868 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:49:04.868 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:04.868 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:04.868 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:49:04.868 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:49:04.878 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 17:49:05.028 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:05.028 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:49:05.208 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:49:05.208 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 17:49:05.248 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:05.248 -07 000000438 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:49:05.258 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:05.258 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:05.258 -07 000000382 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 17:49:05.258 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.837 mm, average velocity = 2.130 mm/sec
17-03-17 17:49:06.208 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:06.208 -07 000000480 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:49:06.218 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:06.218 -07 000000382 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:06.238 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:06.238 -07 000000382 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:06.238 -07 000000382 INF: Y Motor: Moved to 69.0278 after 1430 ms (table move)
17-03-17 17:49:06.238 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136553 mm (DAC = 29830)
17-03-17 17:49:06.238 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.238 -07 000000459 INF: FPGA: Recv ZSGSRD 30558
17-03-17 17:49:06.248 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:06.248 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.248 -07 000000382 INF: FPGA: Recv ZSGSRD 30550
17-03-17 17:49:06.258 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.258 -07 000000475 INF: FPGA: Recv ZSGSRD 30546
17-03-17 17:49:06.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.268 -07 000000541 INF: FPGA: Recv ZSGSRD 30542
17-03-17 17:49:06.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30551
17-03-17 17:49:06.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.288 -07 000000551 INF: FPGA: Recv ZSGSRD 30546
17-03-17 17:49:06.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.298 -07 000000382 INF: FPGA: Recv ZSGSRD 30549
17-03-17 17:49:06.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.308 -07 000000462 INF: FPGA: Recv ZSGSRD 30547
17-03-17 17:49:06.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.318 -07 000000382 INF: FPGA: Recv ZSGSRD 30545
17-03-17 17:49:06.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:06.328 -07 000000608 INF: FPGA: Recv ZSGSRD 30544
17-03-17 17:49:06.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.338 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:06.338 -07 000000541 INF: FPGA: Recv ZPIEZORD 26387
17-03-17 17:49:06.348 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:06.348 -07 000000618 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.1 V.
17-03-17 17:49:06.348 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30548 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30546 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30542 (-135.7 uncal um), Max = 30558 (-135.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:49:06.348 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30548, posNoise = 10, negNoise = 6
17-03-17 17:49:06.348 -07 000000618 INF: Z Motor: After move to -0.136553, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:06.348 -07 000000618 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:49:06.348 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:06.398 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:49:06.398 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:06.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:06.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:06.398 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:06.398 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:06.398 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:06.398 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:06.398 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:06.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:06.408 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:06.408 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:06.408 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:49:06.408 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:49:06.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:06.458 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:06.528 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:06.658 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:06.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:06.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:06.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:49:06.698 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:06.698 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:06.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:49:06.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 17:49:06.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:06.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:06.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 17:49:06.798 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:06.798 -07 000000618 INF: Autofocus start
17-03-17 17:49:06.798 -07 000000618 INF: MeasureProfile start
17-03-17 17:49:06.798 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:06.808 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:06.808 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:06.808 -07 000000618 INF: MeasureProfile done
17-03-17 17:49:06.808 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:49:06.808 -07 000000618 INF: Autofocus finished
17-03-17 17:49:07.008 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:07.008 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:07.008 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136570184517649. ----------
17-03-17 17:49:07.008 -07 000000610 INF: Cycle	5	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:07.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28337, sync = True, waitForSettling = True)
17-03-17 17:49:07.018 -07 000000610 INF: Z Motor: Moving to -0.129718 mm, started at -0.136570 mm, distance = 6.85 um
17-03-17 17:49:07.018 -07 000000610 INF: FPGA: Xmit ZDACW 28337\n [Z Motor]
17-03-17 17:49:07.018 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:49:07.028 -07 000000610 INF: FPGA: 'ZDACW 28337' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:07.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:07.028 -07 000000382 INF: FPGA: Recv ZDACR 28337
17-03-17 17:49:07.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:07.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29482
17-03-17 17:49:07.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:07.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29481
17-03-17 17:49:07.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.208 -07 000000618 INF: FPGA: Recv ZSGSRD 29484
17-03-17 17:49:07.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.218 -07 000000618 INF: FPGA: Recv ZSGSRD 29481
17-03-17 17:49:07.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.228 -07 000000541 INF: FPGA: Recv ZSGSRD 29482
17-03-17 17:49:07.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29482
17-03-17 17:49:07.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.248 -07 000000382 INF: FPGA: Recv ZSGSRD 29484
17-03-17 17:49:07.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29485
17-03-17 17:49:07.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.268 -07 000000480 INF: FPGA: Recv ZSGSRD 29482
17-03-17 17:49:07.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:07.278 -07 000000382 INF: FPGA: Recv ZSGSRD 29484
17-03-17 17:49:07.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:07.288 -07 000000618 INF: FPGA: Recv ZPIEZORD 25009
17-03-17 17:49:07.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:07.298 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.8 V.
17-03-17 17:49:07.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29483 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29482 (-128.9 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29481 (-128.9 uncal um), Max = 29485 (-129.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:49:07.298 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29483, posNoise = 2, negNoise = 2
17-03-17 17:49:07.298 -07 000000610 INF: Z Motor: After move to -0.129718, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:07.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:49:07.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:07.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:07.298 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:07.298 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:07.298 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:07.298 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:07.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:07.298 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:07.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:07.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:07.298 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:07.298 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:07.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:49:07.308 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:07.308 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:07.308 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:07.318 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:49:07.318 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:07.318 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:49:07.318 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:49:07.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28514 150\n [Camera]
17-03-17 17:49:07.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:07.738 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.934904,
17-03-17 17:49:07.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:07.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:07.908 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:07.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:07.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:07.908 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:07.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:07.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:49:07.918 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:07.918 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:49:08.098 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28514 775
17-03-17 17:49:08.248 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:08.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:49:08.288 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:49:08.288 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:08.288 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:08.288 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:49:08.298 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:49:08.298 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:49:08.298 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:08.308 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:49:08.308 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:49:08.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:08.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:08.438 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:08.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:08.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:08.448 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:08.448 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:08.448 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:49:08.568 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:08.568 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:49:08.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:08.628 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:08.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28514 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:49:08.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:08.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129728398586673. ------
17-03-17 17:49:08.638 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13603 mm
17-03-17 17:49:08.638 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:08.638 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:08.638 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29716, sync = True, waitForSettling = False)
17-03-17 17:49:08.638 -07 000000448 INF: Z Motor: Moving to -0.136031 mm, started at -0.129728 mm, distance = -6.30 um
17-03-17 17:49:08.638 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:49:08.638 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:49:08.638 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:08.648 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:49:08.648 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:08.648 -07 000000627 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:49:08.658 -07 000000448 INF: FPGA: Xmit ZDACW 29716\n [Z Motor]
17-03-17 17:49:08.658 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:49:08.658 -07 000000462 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:08.658 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:08.658 -07 000000462 INF: Y Motor: Moving 1352 steps-30
17-03-17 17:49:08.658 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:49:08.668 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:08.668 -07 000000448 INF: FPGA: 'ZDACW 29716' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:49:08.678 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:08.688 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:08.688 -07 000000569 INF: FPGA: Recv ZDACR 29716
17-03-17 17:49:08.698 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:49:08.698 -07 000000448 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:49:08.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 17:49:08.828 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:49:08.828 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:08.828 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:08.838 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:49:08.868 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:08.868 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:49:08.948 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:49:08.948 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:49:08.948 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:08.958 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:49:08.958 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 17:49:09.058 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:49:09.058 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 398 ms overall
17-03-17 17:49:09.088 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:09.088 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:49:09.098 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:09.098 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:09.098 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:49:09.098 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-17 17:49:10.048 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:10.048 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:49:10.058 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.058 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:10.068 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:10.068 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:10.068 -07 000000462 INF: Y Motor: Moved to 69.8638 after 1431 ms (table move)
17-03-17 17:49:10.078 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136031 mm (DAC = 29716)
17-03-17 17:49:10.078 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.078 -07 000000462 INF: FPGA: Recv ZSGSRD 30471
17-03-17 17:49:10.088 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:10.088 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.088 -07 000000462 INF: FPGA: Recv ZSGSRD 30475
17-03-17 17:49:10.098 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.098 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.098 -07 000000569 INF: FPGA: Recv ZSGSRD 30467
17-03-17 17:49:10.108 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.108 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.108 -07 000000569 INF: FPGA: Recv ZSGSRD 30462
17-03-17 17:49:10.118 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.118 -07 000000569 INF: FPGA: Recv ZSGSRD 30464
17-03-17 17:49:10.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.128 -07 000000569 INF: FPGA: Recv ZSGSRD 30459
17-03-17 17:49:10.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.138 -07 000000627 INF: FPGA: Recv ZSGSRD 30457
17-03-17 17:49:10.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.148 -07 000000478 INF: FPGA: Recv ZSGSRD 30464
17-03-17 17:49:10.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.158 -07 000000480 INF: FPGA: Recv ZSGSRD 30469
17-03-17 17:49:10.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:10.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:10.168 -07 000000480 INF: FPGA: Recv ZSGSRD 30472
17-03-17 17:49:10.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.178 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:10.178 -07 000000448 INF: FPGA: Recv ZPIEZORD 26278
17-03-17 17:49:10.188 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.188 -07 000000541 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.2 V.
17-03-17 17:49:10.188 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30466 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30457 (-135.2 uncal um), Max = 30475 (-135.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:49:10.188 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30466, posNoise = 9, negNoise = 9
17-03-17 17:49:10.188 -07 000000541 INF: Z Motor: After move to -0.136031, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:10.188 -07 000000541 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:49:10.188 -07 000000541 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:10.238 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:49:10.238 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:10.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:10.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:10.238 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:10.238 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:10.238 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:10.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:10.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:10.238 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:10.238 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:10.248 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:10.258 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:49:10.258 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:49:10.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:10.308 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:10.508 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:10.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:10.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:10.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:49:10.548 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:10.548 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:10.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 17:49:10.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:49:10.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:10.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:10.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:49:10.648 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:10.648 -07 000000476 INF: Autofocus start
17-03-17 17:49:10.648 -07 000000476 INF: MeasureProfile start
17-03-17 17:49:10.648 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:10.658 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:10.658 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:10.668 -07 000000476 INF: MeasureProfile done
17-03-17 17:49:10.668 -07 000000476 INF: X=48  Z correction [um]=0.2069503
17-03-17 17:49:10.668 -07 000000476 INF: Autofocus finished
17-03-17 17:49:10.858 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:10.858 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:10.858 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136043399122024. ----------
17-03-17 17:49:10.858 -07 000000610 INF: Cycle	5	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:10.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28274, sync = True, waitForSettling = True)
17-03-17 17:49:10.868 -07 000000610 INF: Z Motor: Moving to -0.129430 mm, started at -0.136043 mm, distance = 6.61 um
17-03-17 17:49:10.868 -07 000000610 INF: FPGA: Xmit ZDACW 28274\n [Z Motor]
17-03-17 17:49:10.868 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 17:49:10.878 -07 000000610 INF: FPGA: 'ZDACW 28274' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:10.878 -07 000000478 INF: FPGA: Recv ZDACR 28274
17-03-17 17:49:10.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:10.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:11.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.038 -07 000000478 INF: FPGA: Recv ZSGSRD 29434
17-03-17 17:49:11.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:11.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29441
17-03-17 17:49:11.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.058 -07 000000541 INF: FPGA: Recv ZSGSRD 29435
17-03-17 17:49:11.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29433
17-03-17 17:49:11.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:49:11.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.088 -07 000000448 INF: FPGA: Recv ZSGSRD 29438
17-03-17 17:49:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.098 -07 000000448 INF: FPGA: Recv ZSGSRD 29442
17-03-17 17:49:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.108 -07 000000476 INF: FPGA: Recv ZSGSRD 29436
17-03-17 17:49:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.118 -07 000000541 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:49:11.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:11.128 -07 000000448 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:49:11.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:11.138 -07 000000541 INF: FPGA: Recv ZPIEZORD 24963
17-03-17 17:49:11.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:11.148 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.8 V.
17-03-17 17:49:11.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29438 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29438 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29442 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:49:11.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29438, posNoise = 4, negNoise = 5
17-03-17 17:49:11.148 -07 000000610 INF: Z Motor: After move to -0.129430, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:11.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:49:11.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:11.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:11.148 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:11.148 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:11.148 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:11.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:11.148 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:11.148 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:11.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:49:11.148 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:11.148 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:11.148 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:11.148 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:11.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:49:11.158 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:11.158 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:11.168 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 17:49:11.168 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:49:11.168 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:49:11.168 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:49:11.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28451 150\n [Camera]
17-03-17 17:49:11.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 17:49:11.528 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:11.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:11.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:11.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:11.758 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:11.758 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:11.758 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) start.
17-03-17 17:49:11.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:11.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:11.758 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:11.758 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:11.758 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) start.
17-03-17 17:49:11.948 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28451 775
17-03-17 17:49:12.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:12.138 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1410451104, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:49:12.138 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:49:12.138 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:12.138 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1445873368, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:49:12.138 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:49:12.138 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:12.138 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:12.138 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:49:12.138 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:12.148 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:49:12.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:12.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:12.288 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:12.288 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:12.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) start.
17-03-17 17:49:12.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:12.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:12.298 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:12.298 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:12.298 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 17:49:12.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:12.478 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:12.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28451 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:49:12.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:12.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129439309040294. ------
17-03-17 17:49:12.488 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:12.488 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13583 mm
17-03-17 17:49:12.488 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:12.488 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:49:12.488 -07 000000448 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:49:12.488 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29672, sync = True, waitForSettling = False)
17-03-17 17:49:12.488 -07 000000438 INF: Z Motor: Moving to -0.135830 mm, started at -0.129439 mm, distance = -6.39 um
17-03-17 17:49:12.488 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:12.498 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:12.498 -07 000000438 INF: FPGA: Xmit ZDACW 29672\n [Z Motor]
17-03-17 17:49:12.498 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:49:12.508 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:12.508 -07 000000438 INF: FPGA: 'ZDACW 29672' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:49:12.508 -07 000000551 INF: FPGA: Recv YRDPOS 143082
17-03-17 17:49:12.518 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:12.518 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:49:12.518 -07 000000448 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:12.518 -07 000000448 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:12.518 -07 000000448 INF: Y Motor: Moving 1341 steps-18
17-03-17 17:49:12.528 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:12.528 -07 000000551 INF: FPGA: Recv ZDACR 29672
17-03-17 17:49:12.538 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:12.538 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:49:12.538 -07 000000438 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 17:49:12.668 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1481295632, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:49:12.668 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:49:12.668 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:12.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:49:12.678 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:49:12.678 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:12.678 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:12.678 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:49:12.678 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:49:12.688 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:49:12.718 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:12.718 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:49:12.908 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:49:12.908 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:49:12.948 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:12.948 -07 000000608 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:49:12.958 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:12.958 -07 000000448 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:12.958 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:49:12.958 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 17:49:13.098 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.900765,
17-03-17 17:49:13.908 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:13.908 -07 000000480 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:49:13.918 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:13.918 -07 000000448 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:13.938 -07 000000448 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:13.938 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:13.938 -07 000000448 INF: Y Motor: Moved to 70.6890 after 1448 ms (table move)
17-03-17 17:49:13.938 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135830 mm (DAC = 29672)
17-03-17 17:49:13.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:13.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30430
17-03-17 17:49:13.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:49:13.978 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:13.978 -07 000000608 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:49:13.988 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:49:13.998 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:13.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30436
17-03-17 17:49:14.008 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:49:14.008 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.008 -07 000000480 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:49:14.018 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.018 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.018 -07 000000480 INF: FPGA: Recv ZSGSRD 30429
17-03-17 17:49:14.028 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.028 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30434
17-03-17 17:49:14.038 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.038 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.038 -07 000000541 INF: FPGA: Recv ZSGSRD 30435
17-03-17 17:49:14.048 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.048 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.048 -07 000000480 INF: FPGA: Recv ZSGSRD 30434
17-03-17 17:49:14.058 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.058 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.058 -07 000000480 INF: FPGA: Recv ZSGSRD 30435
17-03-17 17:49:14.068 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.068 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.068 -07 000000459 INF: FPGA: Recv ZSGSRD 30431
17-03-17 17:49:14.078 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.078 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:14.078 -07 000000438 INF: FPGA: Recv ZPIEZORD 26260
17-03-17 17:49:14.088 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.088 -07 000000476 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.2 V.
17-03-17 17:49:14.088 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30434 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30434 (-135.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30429 (-135.0 uncal um), Max = 30438 (-135.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:49:14.088 -07 000000476 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30434, posNoise = 4, negNoise = 5
17-03-17 17:49:14.088 -07 000000476 INF: Z Motor: After move to -0.135830, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:14.088 -07 000000476 INF: Z Motor: Settle wait time = 1453 ms, measure time = 142 ms (allowed 150 ms), total time = 1595 ms
17-03-17 17:49:14.088 -07 000000476 INF: Z Motor: Waiting extra 8 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:14.098 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 17:49:14.098 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:14.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:14.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:14.098 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:14.098 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:14.098 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:14.098 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:14.098 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:14.098 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:14.108 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:14.108 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:14.118 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:49:14.118 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:49:14.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:14.168 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 17:49:14.368 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 17:49:14.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 17:49:14.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:14.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-17 17:49:14.408 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:14.408 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:14.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 17:49:14.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:49:14.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:14.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:49:14.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:49:14.608 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:14.608 -07 000000459 INF: Autofocus start
17-03-17 17:49:14.608 -07 000000459 INF: MeasureProfile start
17-03-17 17:49:14.608 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:14.618 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:49:14.618 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:14.618 -07 000000459 INF: MeasureProfile done
17-03-17 17:49:14.618 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:49:14.618 -07 000000459 INF: Autofocus finished
17-03-17 17:49:14.818 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:14.818 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:14.818 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.135837824333488. ----------
17-03-17 17:49:14.818 -07 000000610 INF: Cycle	5	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:14.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28167, sync = True, waitForSettling = True)
17-03-17 17:49:14.828 -07 000000610 INF: Z Motor: Moving to -0.128940 mm, started at -0.135838 mm, distance = 6.90 um
17-03-17 17:49:14.828 -07 000000610 INF: FPGA: Xmit ZDACW 28167\n [Z Motor]
17-03-17 17:49:14.828 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:49:14.838 -07 000000610 INF: FPGA: 'ZDACW 28167' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:14.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:14.838 -07 000000476 INF: FPGA: Recv ZDACR 28167
17-03-17 17:49:14.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:14.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:14.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:14.998 -07 000000618 INF: FPGA: Recv ZSGSRD 29361
17-03-17 17:49:15.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:15.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.008 -07 000000476 INF: FPGA: Recv ZSGSRD 29364
17-03-17 17:49:15.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.018 -07 000000618 INF: FPGA: Recv ZSGSRD 29360
17-03-17 17:49:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.028 -07 000000480 INF: FPGA: Recv ZSGSRD 29361
17-03-17 17:49:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.038 -07 000000618 INF: FPGA: Recv ZSGSRD 29366
17-03-17 17:49:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.048 -07 000000541 INF: FPGA: Recv ZSGSRD 29359
17-03-17 17:49:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.058 -07 000000438 INF: FPGA: Recv ZSGSRD 29363
17-03-17 17:49:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.068 -07 000000438 INF: FPGA: Recv ZSGSRD 29362
17-03-17 17:49:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29360
17-03-17 17:49:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:15.088 -07 000000541 INF: FPGA: Recv ZSGSRD 29365
17-03-17 17:49:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:15.098 -07 000000618 INF: FPGA: Recv ZPIEZORD 24883
17-03-17 17:49:15.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:15.108 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -9.8 V.
17-03-17 17:49:15.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29362 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29362 (-128.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29359 (-128.2 uncal um), Max = 29366 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:49:15.108 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29362, posNoise = 4, negNoise = 3
17-03-17 17:49:15.108 -07 000000610 INF: Z Motor: After move to -0.128940, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:15.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:49:15.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:15.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:15.108 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:15.108 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:15.108 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:15.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:15.108 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:15.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:15.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:15.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:15.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:15.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:15.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:15.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:15.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:49:15.118 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:15.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:49:15.118 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:49:15.128 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:49:15.128 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:49:15.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28344 150\n [Camera]
17-03-17 17:49:15.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:15.718 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:15.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:15.718 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:15.718 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:15.718 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:49:15.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:15.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:15.718 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:15.718 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:15.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:49:15.908 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28344 775
17-03-17 17:49:16.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:16.098 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:49:16.098 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:49:16.098 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:16.098 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:49:16.098 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:49:16.098 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:16.108 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:16.108 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:16.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:49:16.108 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:49:16.248 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:16.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:16.248 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:16.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:16.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:16.358 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:16.358 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:16.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) start.
17-03-17 17:49:16.368 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:16.368 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start.
17-03-17 17:49:16.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:49:16.438 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:16.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28344 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:49:16.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:16.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.12895106891752. ------
17-03-17 17:49:16.448 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:16.448 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13564 mm
17-03-17 17:49:16.448 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:16.748 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:49:16.748 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:49:16.748 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:16.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:49:16.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:49:16.748 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:16.748 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:16.748 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 17:49:16.748 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:16.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:49:16.758 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:49:16.758 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:49:16.758 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:16.768 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:16.768 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:16.768 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 313 ms to get response, and 323 ms overall
17-03-17 17:49:16.768 -07 000000480 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:49:16.768 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 17:49:16.768 -07 000000541 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:16.768 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:16.768 -07 000000541 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:49:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:16.768 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29632, sync = True, waitForSettling = False)
17-03-17 17:49:16.768 -07 000000480 INF: Z Motor: Moving to -0.135647 mm, started at -0.128951 mm, distance = -6.70 um
17-03-17 17:49:16.768 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:16.778 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:16.788 -07 000000480 INF: FPGA: Xmit ZDACW 29632\n [Z Motor]
17-03-17 17:49:17.758 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:49:17.758 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:17.758 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:49:17.758 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 980 ms to get response, and 986 ms overall
17-03-17 17:49:17.758 -07 000000480 INF: FPGA: 'ZDACW 29632' command took 0 ms to send, 960 ms to get response, and 985 ms overall
17-03-17 17:49:17.758 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:17.758 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 970 ms to get response, and 985 ms overall
17-03-17 17:49:17.758 -07 000000618 INF: FPGA: Recv ZDACR 29632
17-03-17 17:49:17.768 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:17.768 -07 000000480 INF: Z Motor: MoveAbsStepped took 994 ms (did NOT wait for settling yet))
17-03-17 17:49:17.788 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:17.788 -07 000000618 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:49:17.798 -07 000000541 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:17.798 -07 000000541 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:17.798 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:49:17.798 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 987 ms, distance = 0.844 mm, average velocity = 0.855 mm/sec
17-03-17 17:49:18.458 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.955391,
17-03-17 17:49:18.748 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:18.748 -07 000000480 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:49:18.758 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:18.758 -07 000000541 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:18.778 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:18.778 -07 000000541 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:18.778 -07 000000541 INF: Y Motor: Moved to 71.5195 after 2013 ms (table move)
17-03-17 17:49:18.778 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135647 mm (DAC = 29632)
17-03-17 17:49:18.778 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.778 -07 000000382 INF: FPGA: Recv ZSGSRD 30404
17-03-17 17:49:18.788 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:18.788 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.788 -07 000000462 INF: FPGA: Recv ZSGSRD 30408
17-03-17 17:49:18.798 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.798 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.798 -07 000000627 INF: FPGA: Recv ZSGSRD 30401
17-03-17 17:49:18.808 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.808 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.808 -07 000000623 INF: FPGA: Recv ZSGSRD 30409
17-03-17 17:49:18.818 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.818 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.818 -07 000000627 INF: FPGA: Recv ZSGSRD 30402
17-03-17 17:49:18.828 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.828 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.828 -07 000000618 INF: FPGA: Recv ZSGSRD 30404
17-03-17 17:49:18.838 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.838 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.838 -07 000000623 INF: FPGA: Recv ZSGSRD 30404
17-03-17 17:49:18.848 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.848 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.848 -07 000000618 INF: FPGA: Recv ZSGSRD 30405
17-03-17 17:49:18.858 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.858 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.858 -07 000000480 INF: FPGA: Recv ZSGSRD 30407
17-03-17 17:49:18.868 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.868 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:18.868 -07 000000541 INF: FPGA: Recv ZSGSRD 30407
17-03-17 17:49:18.878 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.878 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:18.878 -07 000000480 INF: FPGA: Recv ZPIEZORD 26297
17-03-17 17:49:18.888 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:18.888 -07 000000438 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.522 V. Piezo Error = -9.0 V.
17-03-17 17:49:18.888 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30405 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30404 (-134.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30401 (-134.8 uncal um), Max = 30409 (-134.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:49:18.888 -07 000000438 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30405, posNoise = 4, negNoise = 4
17-03-17 17:49:18.888 -07 000000438 INF: Z Motor: After move to -0.135647, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:18.888 -07 000000438 INF: Z Motor: Settle wait time = 2008 ms, measure time = 107 ms (allowed 150 ms), total time = 2115 ms
17-03-17 17:49:18.888 -07 000000438 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:18.938 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2489 ms
17-03-17 17:49:18.938 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:18.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:18.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:18.938 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:18.938 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:18.938 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:18.938 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:18.938 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:49:18.938 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:18.948 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:18.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:18.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:49:18.948 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:49:18.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:19.008 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:19.198 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:19.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:19.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:19.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start.
17-03-17 17:49:19.238 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:19.238 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:19.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:49:19.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:49:19.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:19.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:19.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:49:19.338 -07 000000623 INF: Autofocus start
17-03-17 17:49:19.338 -07 000000623 INF: MeasureProfile start
17-03-17 17:49:19.348 -07 000000623 INF: MeasureProfile done
17-03-17 17:49:19.348 -07 000000623 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:49:19.348 -07 000000623 INF: Autofocus finished
17-03-17 17:49:19.358 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:19.358 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:19.368 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:49:19.368 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:19.568 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:19.568 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 17:49:19.568 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135651522181377. ----------
17-03-17 17:49:19.578 -07 000000610 INF: Cycle	5	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:19.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28156, sync = True, waitForSettling = True)
17-03-17 17:49:19.578 -07 000000610 INF: Z Motor: Moving to -0.128890 mm, started at -0.135652 mm, distance = 6.76 um
17-03-17 17:49:19.578 -07 000000610 INF: FPGA: Xmit ZDACW 28156\n [Z Motor]
17-03-17 17:49:19.578 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:49:19.588 -07 000000610 INF: FPGA: 'ZDACW 28156' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:49:19.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:19.588 -07 000000382 INF: FPGA: Recv ZDACR 28156
17-03-17 17:49:19.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29356
17-03-17 17:49:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.758 -07 000000480 INF: FPGA: Recv ZSGSRD 29354
17-03-17 17:49:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.768 -07 000000618 INF: FPGA: Recv ZSGSRD 29354
17-03-17 17:49:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29354
17-03-17 17:49:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29353
17-03-17 17:49:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.798 -07 000000382 INF: FPGA: Recv ZSGSRD 29359
17-03-17 17:49:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.808 -07 000000462 INF: FPGA: Recv ZSGSRD 29356
17-03-17 17:49:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.818 -07 000000569 INF: FPGA: Recv ZSGSRD 29355
17-03-17 17:49:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.828 -07 000000541 INF: FPGA: Recv ZSGSRD 29350
17-03-17 17:49:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:19.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29350
17-03-17 17:49:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:19.848 -07 000000627 INF: FPGA: Recv ZPIEZORD 24904
17-03-17 17:49:19.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:19.858 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.8 V.
17-03-17 17:49:19.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29354 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29354 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29350 (-128.1 uncal um), Max = 29359 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:49:19.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29354, posNoise = 5, negNoise = 4
17-03-17 17:49:19.858 -07 000000610 INF: Z Motor: After move to -0.128890, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:19.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:49:19.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:19.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:19.858 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:19.858 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:19.858 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:19.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:19.858 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:19.858 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:19.858 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:49:19.858 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:19.858 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:19.858 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:19.868 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:49:19.868 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:19.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:49:19.868 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:19.878 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:49:19.878 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:19.878 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:49:19.878 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:19.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28332 150\n [Camera]
17-03-17 17:49:20.078 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:20.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:20.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:20.468 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:20.468 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:20.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:20.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:20.478 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:20.478 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1477424512, 0x0, 391868352) start.
17-03-17 17:49:20.478 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:20.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:49:20.658 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28332 775
17-03-17 17:49:20.808 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:20.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1477424512, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 17:49:20.868 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:49:20.868 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:20.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:49:20.868 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:49:20.868 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:20.868 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:20.868 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:49:20.868 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:20.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 17:49:20.998 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:20.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:20.998 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:20.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:20.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:20.998 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:20.998 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:20.998 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:49:21.008 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:21.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 17:49:21.188 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:21.188 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:21.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28332 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:49:21.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:21.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.128899675220386. ------
17-03-17 17:49:21.198 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:21.198 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13486 mm
17-03-17 17:49:21.198 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:21.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:49:21.408 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:49:21.408 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:21.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 17:49:21.408 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 17:49:21.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:21.408 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:21.408 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:49:21.408 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:21.418 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 17:49:21.448 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:49:21.448 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:49:21.448 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:21.458 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:21.458 -07 000000480 INF: FPGA: Recv YRDPOS 146473
17-03-17 17:49:21.458 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 8 ms to get response, and 13 ms overall
17-03-17 17:49:21.458 -07 000000569 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:21.458 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 258 ms to get response, and 266 ms overall
17-03-17 17:49:21.458 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29461, sync = True, waitForSettling = False)
17-03-17 17:49:21.468 -07 000000480 INF: Z Motor: Moving to -0.134864 mm, started at -0.128900 mm, distance = -5.96 um
17-03-17 17:49:21.468 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:21.468 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:21.468 -07 000000569 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:49:21.478 -07 000000480 INF: FPGA: Xmit ZDACW 29461\n [Z Motor]
17-03-17 17:49:21.488 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:22.258 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:49:22.258 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:22.258 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:22.258 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:49:22.258 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 760 ms to get response, and 788 ms overall
17-03-17 17:49:22.258 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:22.258 -07 000000480 INF: FPGA: 'ZDACW 29461' command took 0 ms to send, 770 ms to get response, and 790 ms overall
17-03-17 17:49:22.258 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 781 ms to get response, and 790 ms overall
17-03-17 17:49:22.258 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:22.258 -07 000000623 INF: FPGA: Recv ZDACR 29461
17-03-17 17:49:22.268 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:22.268 -07 000000480 INF: Z Motor: MoveAbsStepped took 800 ms (did NOT wait for settling yet))
17-03-17 17:49:22.288 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:22.288 -07 000000480 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:49:22.298 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:49:22.298 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:22.298 -07 000000569 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:49:22.298 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 789 ms, distance = 0.843 mm, average velocity = 1.069 mm/sec
17-03-17 17:49:23.248 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:23.248 -07 000000608 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:49:23.258 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:23.258 -07 000000569 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:23.278 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:23.278 -07 000000569 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:23.278 -07 000000569 INF: Y Motor: Moved to 72.3501 after 1826 ms (table move)
17-03-17 17:49:23.278 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134864 mm (DAC = 29461)
17-03-17 17:49:23.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.278 -07 000000608 INF: FPGA: Recv ZSGSRD 30287
17-03-17 17:49:23.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:49:23.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.288 -07 000000623 INF: FPGA: Recv ZSGSRD 30284
17-03-17 17:49:23.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30287
17-03-17 17:49:23.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.308 -07 000000608 INF: FPGA: Recv ZSGSRD 30279
17-03-17 17:49:23.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.318 -07 000000480 INF: FPGA: Recv ZSGSRD 30284
17-03-17 17:49:23.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.338 -07 000000608 INF: FPGA: Recv ZSGSRD 30285
17-03-17 17:49:23.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:49:23.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.338 -07 000000569 INF: FPGA: Recv ZSGSRD 30288
17-03-17 17:49:23.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:23.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30284
17-03-17 17:49:23.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.358 -07 000000547 INF: FPGA: Recv ZSGSRD 30276
17-03-17 17:49:23.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:23.368 -07 000000623 INF: FPGA: Recv ZSGSRD 30277
17-03-17 17:49:23.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.378 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:23.378 -07 000000547 INF: FPGA: Recv ZPIEZORD 26144
17-03-17 17:49:23.388 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:23.388 -07 000000382 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -9.1 V.
17-03-17 17:49:23.388 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30283 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30284 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30276 (-134.0 uncal um), Max = 30288 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:49:23.388 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30283, posNoise = 5, negNoise = 7
17-03-17 17:49:23.388 -07 000000382 INF: Z Motor: After move to -0.134864, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:23.388 -07 000000382 INF: Z Motor: Settle wait time = 1816 ms, measure time = 104 ms (allowed 150 ms), total time = 1920 ms
17-03-17 17:49:23.388 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:23.438 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2237 ms
17-03-17 17:49:23.438 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:23.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:23.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:23.438 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:23.438 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:23.438 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:23.438 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:23.448 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:23.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:23.448 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:23.448 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:23.448 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:49:23.448 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:49:23.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:23.508 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:23.698 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:23.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:23.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:23.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start.
17-03-17 17:49:23.738 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:23.738 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:23.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:49:23.818 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.988112,
17-03-17 17:49:23.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:49:23.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:23.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:23.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:49:23.838 -07 000000480 INF: Autofocus start
17-03-17 17:49:23.838 -07 000000480 INF: MeasureProfile start
17-03-17 17:49:23.848 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:23.848 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:23.858 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:49:23.858 -07 000000480 INF: MeasureProfile done
17-03-17 17:49:23.858 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:49:23.858 -07 000000480 INF: Autofocus finished
17-03-17 17:49:23.868 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:24.068 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:24.068 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 216 ms overall
17-03-17 17:49:24.078 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134867768300082. ----------
17-03-17 17:49:24.078 -07 000000610 INF: Cycle	5	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:24.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27985, sync = True, waitForSettling = True)
17-03-17 17:49:24.078 -07 000000610 INF: Z Motor: Moving to -0.128107 mm, started at -0.134868 mm, distance = 6.76 um
17-03-17 17:49:24.078 -07 000000610 INF: FPGA: Xmit ZDACW 27985\n [Z Motor]
17-03-17 17:49:24.078 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:49:24.088 -07 000000610 INF: FPGA: 'ZDACW 27985' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:49:24.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:24.088 -07 000000438 INF: FPGA: Recv ZDACR 27985
17-03-17 17:49:24.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:24.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.248 -07 000000547 INF: FPGA: Recv ZSGSRD 29236
17-03-17 17:49:24.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:24.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.258 -07 000000438 INF: FPGA: Recv ZSGSRD 29235
17-03-17 17:49:24.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.268 -07 000000623 INF: FPGA: Recv ZSGSRD 29233
17-03-17 17:49:24.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29230
17-03-17 17:49:24.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.288 -07 000000438 INF: FPGA: Recv ZSGSRD 29232
17-03-17 17:49:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.298 -07 000000478 INF: FPGA: Recv ZSGSRD 29233
17-03-17 17:49:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29236
17-03-17 17:49:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.318 -07 000000547 INF: FPGA: Recv ZSGSRD 29228
17-03-17 17:49:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.328 -07 000000478 INF: FPGA: Recv ZSGSRD 29233
17-03-17 17:49:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:24.338 -07 000000547 INF: FPGA: Recv ZSGSRD 29234
17-03-17 17:49:24.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:24.348 -07 000000478 INF: FPGA: Recv ZPIEZORD 24755
17-03-17 17:49:24.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:24.358 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.8 V.
17-03-17 17:49:24.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29233 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29233 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29228 (-127.3 uncal um), Max = 29236 (-127.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:49:24.358 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29233, posNoise = 3, negNoise = 5
17-03-17 17:49:24.358 -07 000000610 INF: Z Motor: After move to -0.128107, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:24.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:49:24.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:24.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:24.358 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:24.358 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:24.358 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:24.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:24.358 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:24.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:24.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:24.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:24.358 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:24.358 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:24.368 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:24.368 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:24.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:49:24.368 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:24.378 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:49:24.378 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:24.378 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:49:24.378 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:49:24.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28162 150\n [Camera]
17-03-17 17:49:24.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:24.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:24.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:24.968 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:24.968 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:24.968 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1473019208, 0x0, 391868352) start.
17-03-17 17:49:24.978 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:24.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:24.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:24.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:24.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) start.
17-03-17 17:49:25.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28162 775
17-03-17 17:49:25.308 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:25.358 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1473019208, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 17:49:25.358 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:49:25.358 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:25.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1052119088, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 17:49:25.368 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:49:25.368 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:25.368 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:49:25.368 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:49:25.368 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:25.378 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:49:25.498 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:25.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:25.498 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:25.618 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:25.618 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:49:25.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:25.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:25.618 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:25.618 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:25.618 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:49:25.688 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:25.688 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:25.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28162 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:49:25.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:25.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128122345551233. ------
17-03-17 17:49:25.698 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:25.698 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13469 mm
17-03-17 17:49:25.698 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:25.698 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:49:25.698 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:49:25.708 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:26.018 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 17:49:26.018 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 17:49:26.018 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:26.018 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 17:49:26.018 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 17:49:26.018 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:26.028 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:26.028 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:49:26.028 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 17:49:26.028 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 17:49:26.038 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:26.038 -07 000000459 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:49:26.038 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 338 ms to get response, and 345 ms overall
17-03-17 17:49:26.038 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 328 ms to get response, and 342 ms overall
17-03-17 17:49:26.038 -07 000000438 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:26.038 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:26.038 -07 000000438 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:49:26.048 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:26.048 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29424, sync = True, waitForSettling = False)
17-03-17 17:49:26.048 -07 000000459 INF: Z Motor: Moving to -0.134694 mm, started at -0.128122 mm, distance = -6.57 um
17-03-17 17:49:26.058 -07 000000459 INF: FPGA: Xmit ZDACW 29424\n [Z Motor]
17-03-17 17:49:26.058 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:49:26.068 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:26.068 -07 000000459 INF: FPGA: 'ZDACW 29424' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:49:26.078 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:26.078 -07 000000608 INF: FPGA: Recv ZDACR 29424
17-03-17 17:49:26.088 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:49:26.088 -07 000000459 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:49:26.248 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:26.248 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 17:49:26.438 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:49:26.438 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 17:49:26.468 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:26.478 -07 000000459 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:49:26.488 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:26.488 -07 000000438 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:26.488 -07 000000438 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:49:26.488 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 17:49:26.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:27.438 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:27.438 -07 000000608 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:49:27.448 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:27.448 -07 000000438 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:27.458 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:27.458 -07 000000438 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:27.468 -07 000000438 INF: Y Motor: Moved to 73.1763 after 1763 ms (table move)
17-03-17 17:49:27.468 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134694 mm (DAC = 29424)
17-03-17 17:49:27.468 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.468 -07 000000459 INF: FPGA: Recv ZSGSRD 30245
17-03-17 17:49:27.478 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:27.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.478 -07 000000438 INF: FPGA: Recv ZSGSRD 30246
17-03-17 17:49:27.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.488 -07 000000608 INF: FPGA: Recv ZSGSRD 30255
17-03-17 17:49:27.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.498 -07 000000476 INF: FPGA: Recv ZSGSRD 30255
17-03-17 17:49:27.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.508 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.508 -07 000000608 INF: FPGA: Recv ZSGSRD 30255
17-03-17 17:49:27.518 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.518 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.518 -07 000000608 INF: FPGA: Recv ZSGSRD 30260
17-03-17 17:49:27.528 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:27.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.528 -07 000000476 INF: FPGA: Recv ZSGSRD 30263
17-03-17 17:49:27.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.538 -07 000000541 INF: FPGA: Recv ZSGSRD 30254
17-03-17 17:49:27.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.548 -07 000000608 INF: FPGA: Recv ZSGSRD 30251
17-03-17 17:49:27.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:27.558 -07 000000476 INF: FPGA: Recv ZSGSRD 30253
17-03-17 17:49:27.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.568 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:27.568 -07 000000462 INF: FPGA: Recv ZPIEZORD 26136
17-03-17 17:49:27.578 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:27.578 -07 000000448 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.1 V.
17-03-17 17:49:27.578 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30254 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30254 (-133.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30245 (-133.8 uncal um), Max = 30263 (-133.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:49:27.578 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30254, posNoise = 9, negNoise = 9
17-03-17 17:49:27.578 -07 000000448 INF: Z Motor: After move to -0.134694, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:27.578 -07 000000448 INF: Z Motor: Settle wait time = 1422 ms, measure time = 107 ms (allowed 150 ms), total time = 1529 ms
17-03-17 17:49:27.578 -07 000000448 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:27.628 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1926 ms
17-03-17 17:49:27.628 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:27.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:27.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:27.628 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:27.628 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:27.628 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:27.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:27.628 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:27.628 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:27.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:27.638 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:27.638 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:49:27.638 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:49:27.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:27.688 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:27.888 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:27.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:27.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:27.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 17:49:27.928 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:27.928 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:27.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:49:28.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 17:49:28.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:28.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:28.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:49:28.028 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:28.028 -07 000000476 INF: Autofocus start
17-03-17 17:49:28.028 -07 000000476 INF: MeasureProfile start
17-03-17 17:49:28.028 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:28.038 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:28.038 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:28.038 -07 000000476 INF: MeasureProfile done
17-03-17 17:49:28.038 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:49:28.038 -07 000000476 INF: Autofocus finished
17-03-17 17:49:28.238 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:28.238 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:28.238 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134681466147971. ----------
17-03-17 17:49:28.238 -07 000000610 INF: Cycle	5	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:28.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27931, sync = True, waitForSettling = True)
17-03-17 17:49:28.248 -07 000000610 INF: Z Motor: Moving to -0.127860 mm, started at -0.134681 mm, distance = 6.82 um
17-03-17 17:49:28.248 -07 000000610 INF: FPGA: Xmit ZDACW 27931\n [Z Motor]
17-03-17 17:49:28.248 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:49:28.258 -07 000000610 INF: FPGA: 'ZDACW 27931' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:28.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:28.258 -07 000000448 INF: FPGA: Recv ZDACR 27931
17-03-17 17:49:28.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:28.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.418 -07 000000541 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:49:28.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.428 -07 000000462 INF: FPGA: Recv ZSGSRD 29193
17-03-17 17:49:28.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:49:28.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.448 -07 000000448 INF: FPGA: Recv ZSGSRD 29191
17-03-17 17:49:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29195
17-03-17 17:49:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29195
17-03-17 17:49:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29197
17-03-17 17:49:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.488 -07 000000448 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:49:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29192
17-03-17 17:49:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:28.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29194
17-03-17 17:49:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:28.518 -07 000000618 INF: FPGA: Recv ZPIEZORD 24726
17-03-17 17:49:28.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:28.528 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.8 V.
17-03-17 17:49:28.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29194 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29194 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29191 (-127.1 uncal um), Max = 29197 (-127.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:49:28.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29194, posNoise = 3, negNoise = 3
17-03-17 17:49:28.528 -07 000000610 INF: Z Motor: After move to -0.127860, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:28.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:49:28.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:28.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:28.528 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:28.528 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:28.528 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:28.528 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:28.528 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:28.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:28.528 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:28.528 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:28.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 17:49:28.528 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:28.538 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:49:28.538 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:28.538 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:49:28.538 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:28.538 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:49:28.538 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:49:28.548 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:49:28.548 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:49:28.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28108 150\n [Camera]
17-03-17 17:49:28.748 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:29.138 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:29.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:29.138 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:29.138 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:29.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 17:49:29.138 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:29.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:29.138 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:29.138 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:29.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 17:49:29.188 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.98264,
17-03-17 17:49:29.328 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28108 775
17-03-17 17:49:29.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:29.538 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:49:29.538 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:49:29.538 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:29.538 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:49:29.538 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:49:29.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:29.538 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:29.538 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 17:49:29.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:29.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 17:49:29.668 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:29.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:29.668 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:29.668 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:29.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:49:29.668 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:29.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:29.668 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:29.668 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:29.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 17:49:29.858 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:49:29.858 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:29.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28108 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 17:49:29.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:29.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127871801277704. ------
17-03-17 17:49:29.868 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:29.868 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13417 mm
17-03-17 17:49:29.868 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:29.868 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:49:29.868 -07 000000627 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:49:29.868 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:29.868 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29310, sync = True, waitForSettling = False)
17-03-17 17:49:29.868 -07 000000438 INF: Z Motor: Moving to -0.134173 mm, started at -0.127872 mm, distance = -6.30 um
17-03-17 17:49:29.878 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:29.878 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:29.888 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:29.898 -07 000000438 INF: FPGA: Xmit ZDACW 29310\n [Z Motor]
17-03-17 17:49:30.068 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:49:30.068 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:49:30.068 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:30.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 17:49:30.078 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:49:30.078 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:30.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:30.078 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:49:30.078 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 17:49:30.088 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 17:49:30.098 -07 000000551 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:49:30.098 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:49:30.098 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 201 ms to get response, and 226 ms overall
17-03-17 17:49:30.098 -07 000000438 INF: FPGA: 'ZDACW 29310' command took 0 ms to send, 191 ms to get response, and 225 ms overall
17-03-17 17:49:30.098 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:30.098 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 212 ms to get response, and 221 ms overall
17-03-17 17:49:30.098 -07 000000627 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:30.098 -07 000000627 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:30.098 -07 000000627 INF: Y Motor: Moving 1353 steps-33
17-03-17 17:49:30.108 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:30.108 -07 000000551 INF: FPGA: Recv ZDACR 29310
17-03-17 17:49:30.118 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:30.118 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:49:30.118 -07 000000438 INF: Z Motor: MoveAbsStepped took 244 ms (did NOT wait for settling yet))
17-03-17 17:49:30.488 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:49:30.488 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:49:30.518 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:30.518 -07 000000551 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:49:30.528 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:49:30.528 -07 000000627 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:30.528 -07 000000627 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:49:30.528 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.159 mm/sec
17-03-17 17:49:31.478 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:31.478 -07 000000438 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:49:31.488 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.488 -07 000000627 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:31.498 -07 000000627 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:31.498 -07 000000627 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:31.498 -07 000000627 INF: Y Motor: Moved to 74.0088 after 1629 ms (table move)
17-03-17 17:49:31.498 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134173 mm (DAC = 29310)
17-03-17 17:49:31.498 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.508 -07 000000438 INF: FPGA: Recv ZSGSRD 30178
17-03-17 17:49:31.508 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:49:31.508 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30181
17-03-17 17:49:31.518 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:31.518 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.518 -07 000000627 INF: FPGA: Recv ZSGSRD 30170
17-03-17 17:49:31.528 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.528 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.528 -07 000000551 INF: FPGA: Recv ZSGSRD 30167
17-03-17 17:49:31.538 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:31.538 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:31.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30174
17-03-17 17:49:31.548 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.548 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.548 -07 000000627 INF: FPGA: Recv ZSGSRD 30177
17-03-17 17:49:31.558 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.558 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.558 -07 000000618 INF: FPGA: Recv ZSGSRD 30179
17-03-17 17:49:31.568 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.568 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.568 -07 000000627 INF: FPGA: Recv ZSGSRD 30179
17-03-17 17:49:31.578 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.578 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.578 -07 000000438 INF: FPGA: Recv ZSGSRD 30176
17-03-17 17:49:31.588 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.588 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:31.588 -07 000000627 INF: FPGA: Recv ZSGSRD 30174
17-03-17 17:49:31.598 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.598 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:31.598 -07 000000438 INF: FPGA: Recv ZPIEZORD 26018
17-03-17 17:49:31.608 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:31.608 -07 000000476 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.472 V. Piezo Error = -9.1 V.
17-03-17 17:49:31.608 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30176 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30176 (-133.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30167 (-133.3 uncal um), Max = 30181 (-133.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:49:31.608 -07 000000476 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30176, posNoise = 5, negNoise = 9
17-03-17 17:49:31.608 -07 000000476 INF: Z Motor: After move to -0.134173, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:31.608 -07 000000476 INF: Z Motor: Settle wait time = 1632 ms, measure time = 102 ms (allowed 150 ms), total time = 1734 ms
17-03-17 17:49:31.608 -07 000000476 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:31.658 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1788 ms
17-03-17 17:49:31.658 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:31.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:31.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:31.658 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:31.658 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:31.658 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:31.658 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:31.658 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:31.658 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:31.668 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:31.668 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:31.668 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:49:31.668 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:49:31.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:31.718 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:31.918 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:31.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:31.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:31.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:49:31.958 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:31.958 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:31.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:49:32.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:49:32.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:32.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:32.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:49:32.058 -07 000000623 INF: Autofocus start
17-03-17 17:49:32.058 -07 000000623 INF: MeasureProfile start
17-03-17 17:49:32.058 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:32.058 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:32.068 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:49:32.068 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:32.068 -07 000000623 INF: MeasureProfile done
17-03-17 17:49:32.068 -07 000000623 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:49:32.068 -07 000000623 INF: Autofocus finished
17-03-17 17:49:32.268 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:32.268 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:32.268 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134180377600914. ----------
17-03-17 17:49:32.268 -07 000000610 INF: Cycle	5	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:32.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27835, sync = True, waitForSettling = True)
17-03-17 17:49:32.278 -07 000000610 INF: Z Motor: Moving to -0.127420 mm, started at -0.134180 mm, distance = 6.76 um
17-03-17 17:49:32.278 -07 000000610 INF: FPGA: Xmit ZDACW 27835\n [Z Motor]
17-03-17 17:49:32.278 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:49:32.288 -07 000000610 INF: FPGA: 'ZDACW 27835' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:32.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:32.288 -07 000000551 INF: FPGA: Recv ZDACR 27835
17-03-17 17:49:32.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:32.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.448 -07 000000476 INF: FPGA: Recv ZSGSRD 29120
17-03-17 17:49:32.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:32.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.458 -07 000000480 INF: FPGA: Recv ZSGSRD 29126
17-03-17 17:49:32.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.468 -07 000000476 INF: FPGA: Recv ZSGSRD 29127
17-03-17 17:49:32.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.478 -07 000000547 INF: FPGA: Recv ZSGSRD 29125
17-03-17 17:49:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29121
17-03-17 17:49:32.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29128
17-03-17 17:49:32.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29125
17-03-17 17:49:32.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.518 -07 000000569 INF: FPGA: Recv ZSGSRD 29126
17-03-17 17:49:32.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.528 -07 000000627 INF: FPGA: Recv ZSGSRD 29123
17-03-17 17:49:32.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:32.538 -07 000000569 INF: FPGA: Recv ZSGSRD 29127
17-03-17 17:49:32.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:32.548 -07 000000627 INF: FPGA: Recv ZPIEZORD 24669
17-03-17 17:49:32.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:32.558 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.247 V. Piezo Error = -9.8 V.
17-03-17 17:49:32.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29125 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29126 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29120 (-126.6 uncal um), Max = 29128 (-126.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:49:32.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29125, posNoise = 3, negNoise = 5
17-03-17 17:49:32.558 -07 000000610 INF: Z Motor: After move to -0.127420, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:32.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:49:32.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:32.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:32.558 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:32.558 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:32.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:32.558 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:32.558 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:32.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:32.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:32.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:32.558 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:32.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:32.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:32.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:32.568 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:49:32.568 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:32.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:49:32.578 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:32.578 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:49:32.578 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:49:32.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28011 150\n [Camera]
17-03-17 17:49:32.778 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:33.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:33.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:33.168 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:33.168 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:33.168 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 17:49:33.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:33.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:33.168 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:33.168 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:33.168 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 17:49:33.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28011 775
17-03-17 17:49:33.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:33.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:49:33.548 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:49:33.548 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:33.548 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:49:33.548 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:49:33.548 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:33.548 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:33.548 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:49:33.558 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:33.558 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:49:33.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:49:33.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:49:33.698 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:33.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:49:33.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:49:33.698 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:33.708 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:33.708 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:49:33.708 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:33.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start.
17-03-17 17:49:33.888 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:49:33.888 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:33.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28011 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:49:33.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:49:33.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127428530639923. ------
17-03-17 17:49:33.898 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:33.898 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13373 mm
17-03-17 17:49:33.898 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:49:33.898 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:33.898 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29214, sync = True, waitForSettling = False)
17-03-17 17:49:33.898 -07 000000438 INF: Z Motor: Moving to -0.133733 mm, started at -0.127429 mm, distance = -6.30 um
17-03-17 17:49:33.898 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:49:33.898 -07 000000551 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:49:33.908 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:33.908 -07 000000438 INF: FPGA: Xmit ZDACW 29214\n [Z Motor]
17-03-17 17:49:33.908 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:49:33.918 -07 000000438 INF: FPGA: 'ZDACW 29214' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:49:33.918 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:33.918 -07 000000480 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:49:33.928 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:49:33.928 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:49:33.928 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:33.928 -07 000000551 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:49:33.928 -07 000000551 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:49:33.938 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:33.938 -07 000000623 INF: FPGA: Recv ZDACR 29214
17-03-17 17:49:33.948 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:49:33.948 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:49:33.948 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:49:34.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:49:34.098 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:49:34.098 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:34.108 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:49:34.108 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:49:34.108 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:34.108 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:34.108 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:49:34.108 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 17:49:34.108 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:49:34.128 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:49:34.128 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:49:34.318 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:49:34.318 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:49:34.338 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:34.348 -07 000000547 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:49:34.348 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:49:34.348 -07 000000551 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:34.348 -07 000000551 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:49:34.348 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 17:49:34.548 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.974486,
17-03-17 17:49:35.298 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:35.298 -07 000000547 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:49:35.308 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:35.308 -07 000000551 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:35.318 -07 000000551 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:35.318 -07 000000551 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:49:35.318 -07 000000551 INF: Y Motor: Moved to 74.8325 after 1418 ms (table move)
17-03-17 17:49:35.318 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133733 mm (DAC = 29214)
17-03-17 17:49:35.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.328 -07 000000551 INF: FPGA: Recv ZSGSRD 30106
17-03-17 17:49:35.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:49:35.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30115
17-03-17 17:49:35.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:35.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.338 -07 000000623 INF: FPGA: Recv ZSGSRD 30110
17-03-17 17:49:35.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.348 -07 000000623 INF: FPGA: Recv ZSGSRD 30108
17-03-17 17:49:35.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:49:35.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.358 -07 000000551 INF: FPGA: Recv ZSGSRD 30103
17-03-17 17:49:35.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.368 -07 000000623 INF: FPGA: Recv ZSGSRD 30106
17-03-17 17:49:35.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.378 -07 000000623 INF: FPGA: Recv ZSGSRD 30108
17-03-17 17:49:35.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.388 -07 000000623 INF: FPGA: Recv ZSGSRD 30108
17-03-17 17:49:35.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.398 -07 000000547 INF: FPGA: Recv ZSGSRD 30101
17-03-17 17:49:35.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:35.408 -07 000000623 INF: FPGA: Recv ZSGSRD 30115
17-03-17 17:49:35.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.418 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:35.418 -07 000000547 INF: FPGA: Recv ZPIEZORD 25934
17-03-17 17:49:35.428 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:35.428 -07 000000608 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.458 V. Piezo Error = -9.2 V.
17-03-17 17:49:35.428 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30108 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30108 (-133.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30101 (-132.9 uncal um), Max = 30115 (-133.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:49:35.428 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30108, posNoise = 7, negNoise = 7
17-03-17 17:49:35.428 -07 000000608 INF: Z Motor: After move to -0.133733, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:35.428 -07 000000608 INF: Z Motor: Settle wait time = 1422 ms, measure time = 102 ms (allowed 150 ms), total time = 1524 ms
17-03-17 17:49:35.428 -07 000000608 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:49:35.478 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 17:49:35.478 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:49:35.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:35.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:35.478 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:35.478 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:35.478 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:49:35.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:35.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:49:35.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:49:35.488 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:35.488 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:49:35.498 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:49:35.498 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:49:35.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:49:35.558 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:49:35.758 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:49:35.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:49:35.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:49:35.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:49:35.798 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:49:35.798 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:49:35.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 275 ms to get response, and 299 ms overall
17-03-17 17:49:35.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:49:35.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:35.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:49:35.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:49:35.998 -07 000000623 INF: Autofocus start
17-03-17 17:49:35.998 -07 000000623 INF: MeasureProfile start
17-03-17 17:49:35.998 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:49:35.998 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:49:36.008 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:49:36.008 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:49:36.008 -07 000000623 INF: MeasureProfile done
17-03-17 17:49:36.018 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:49:36.018 -07 000000623 INF: Autofocus finished
17-03-17 17:49:36.208 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:49:36.208 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:49:36.208 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.133743531175274. ----------
17-03-17 17:49:36.208 -07 000000610 INF: Cycle	5	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:49:36.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27721, sync = True, waitForSettling = True)
17-03-17 17:49:36.218 -07 000000610 INF: Z Motor: Moving to -0.126899 mm, started at -0.133744 mm, distance = 6.84 um
17-03-17 17:49:36.218 -07 000000610 INF: FPGA: Xmit ZDACW 27721\n [Z Motor]
17-03-17 17:49:36.218 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:49:36.228 -07 000000610 INF: FPGA: 'ZDACW 27721' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:36.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:49:36.228 -07 000000478 INF: FPGA: Recv ZDACR 27721
17-03-17 17:49:36.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:49:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.388 -07 000000547 INF: FPGA: Recv ZSGSRD 29044
17-03-17 17:49:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.398 -07 000000478 INF: FPGA: Recv ZSGSRD 29042
17-03-17 17:49:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.408 -07 000000547 INF: FPGA: Recv ZSGSRD 29038
17-03-17 17:49:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.418 -07 000000478 INF: FPGA: Recv ZSGSRD 29044
17-03-17 17:49:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.428 -07 000000448 INF: FPGA: Recv ZSGSRD 29043
17-03-17 17:49:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.438 -07 000000623 INF: FPGA: Recv ZSGSRD 29045
17-03-17 17:49:36.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.448 -07 000000547 INF: FPGA: Recv ZSGSRD 29042
17-03-17 17:49:36.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.458 -07 000000478 INF: FPGA: Recv ZSGSRD 29042
17-03-17 17:49:36.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29045
17-03-17 17:49:36.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:49:36.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29043
17-03-17 17:49:36.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:49:36.488 -07 000000448 INF: FPGA: Recv ZPIEZORD 24572
17-03-17 17:49:36.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:49:36.498 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.230 V. Piezo Error = -9.8 V.
17-03-17 17:49:36.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29043 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29043 (-126.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29038 (-126.1 uncal um), Max = 29045 (-126.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:49:36.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29043, posNoise = 2, negNoise = 5
17-03-17 17:49:36.498 -07 000000610 INF: Z Motor: After move to -0.126899, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:49:36.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:49:36.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:49:36.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:49:36.498 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:49:36.498 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:49:36.498 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:49:36.498 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:49:36.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:49:36.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:49:36.498 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:49:36.498 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:49:36.498 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:49:36.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:49:36.508 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:49:36.508 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:49:36.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:49:36.508 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:49:36.518 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:49:36.518 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:49:36.518 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:49:36.518 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:49:36.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27898 150\n [Camera]
17-03-17 17:49:36.538 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:36.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 4. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:36.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:49:37.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:49:37.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:49:37.108 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:37.108 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:37.108 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) start.
17-03-17 17:49:37.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:49:37.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:49:37.108 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:37.108 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:37.108 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) start.
17-03-17 17:49:37.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27898 775
17-03-17 17:49:37.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:49:37.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1052119088, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:49:37.488 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:49:37.488 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:37.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1087541352, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:49:37.488 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:49:37.488 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:37.488 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:37.488 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:49:37.488 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:49:37.498 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:49:37.638 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:49:37.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:49:37.638 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:49:37.638 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:49:37.638 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) start.
17-03-17 17:49:37.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:49:37.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:49:37.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:49:37.638 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:49:37.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:49:37.828 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:49:37.828 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:49:37.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27898 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:49:38.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:49:38.018 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:49:38.018 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:38.018 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1122963616, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:49:38.018 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:49:38.018 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:49:38.028 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:49:38.028 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:49:38.028 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:49:38.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:49:38.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:49:38.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 17:49:38.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:49:38.108 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:49:38.138 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 17:49:38.138 -07 000000610 INF: Imaging Cycle 5: ScanTilesCommand Cycle 5 time end. Duration was 166140 ms.
17-03-17 17:49:38.138 -07 000000610 INF: =================== Cycle #5 ===================
17-03-17 17:49:38.138 -07 000000610 INF: ===================  ===================
17-03-17 17:49:38.138 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:49:38.138 -07 000000608 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 17:49:38.138 -07 000000610 WRN: Offset file 'D:\Illumina\MiSeqFGxTemp\170317_M03814_0172_000000000-B2K79\Data\Intensities\Offsets\offsets.txt' does not exist.
17-03-17 17:49:38.138 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-17 17:49:38.148 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:49:38.148 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 17:49:38.148 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 5, FrontChillerTemperature: 3.974486, FrontChillerHeatSinkTemperature: 0.102766, AmbientTemperature: 18.7044, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.44261, GreenLEDSensorTemperature: 26.11874, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049